Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363820 | XP_003600393.1 | 97.494 | 399 | 10 | 0 | 1 | 399 | 1 | 399 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363820 | sp|P52432|RPAC1_MOUSE | 42.473 | 372 | 161 | 6 | 42 | 398 | 7 | 340 | 8.11e-88 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363820 | G7IXS2 | 97.494 | 399 | 10 | 0 | 1 | 399 | 1 | 399 | 0.0 | 801 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0363820 | Msa0411420 | 0.859852 | 3.105509e-63 | -8.615850e-47 |
| Msa0363820 | Msa0455730 | 0.824277 | 8.807143e-54 | -8.615850e-47 |
| Msa0363820 | Msa0704980 | 0.802610 | 5.171128e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363820 | MtrunA17_Chr3g0102701 | 97.494 | 399 | 10 | 0 | 1 | 399 | 1 | 399 | 0.0 | 801 |
| Msa0363820 | MtrunA17_Chr4g0043761 | 31.861 | 317 | 175 | 9 | 87 | 394 | 11 | 295 | 4.04e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0363820 | AT1G60620.1 | 65.067 | 375 | 116 | 5 | 28 | 399 | 23 | 385 | 1.06e-173 | 490 |
| Msa0363820 | AT1G60850.2 | 60.916 | 371 | 128 | 6 | 28 | 394 | 15 | 372 | 7.45e-156 | 444 |
| Msa0363820 | AT1G60850.4 | 60.916 | 371 | 128 | 6 | 28 | 394 | 15 | 372 | 7.45e-156 | 444 |
| Msa0363820 | AT1G60850.1 | 60.916 | 371 | 128 | 6 | 28 | 394 | 15 | 372 | 7.45e-156 | 444 |
| Msa0363820 | AT1G60620.2 | 66.566 | 332 | 96 | 5 | 71 | 399 | 1 | 320 | 1.80e-155 | 441 |
| Msa0363820 | AT1G60850.3 | 63.498 | 263 | 89 | 5 | 28 | 286 | 15 | 274 | 4.25e-111 | 328 |
| Msa0363820 | AT2G15430.1 | 33.642 | 324 | 170 | 11 | 83 | 394 | 6 | 296 | 3.67e-40 | 145 |
| Msa0363820 | AT2G15400.1 | 33.333 | 324 | 171 | 10 | 83 | 394 | 6 | 296 | 3.20e-37 | 137 |
| Msa0363820 | AT2G15430.2 | 34.553 | 246 | 126 | 9 | 83 | 316 | 6 | 228 | 2.52e-32 | 122 |
| Msa0363820 | AT2G15430.3 | 34.553 | 246 | 126 | 9 | 83 | 316 | 6 | 228 | 3.63e-32 | 122 |
| Msa0363820 | AT2G15400.2 | 34.836 | 244 | 124 | 8 | 83 | 314 | 6 | 226 | 1.24e-29 | 115 |
Find 91 sgRNAs with CRISPR-Local
Find 277 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAGAGATATTAGGGTTT+AGG | 0.174493 | 3_1:+56456821 | None:intergenic |
| GAGAGAGATATTAGGGTTTA+GGG | 0.207199 | 3_1:+56456822 | None:intergenic |
| AGATCCAGCCCCTTGTAATT+TGG | 0.213911 | 3_1:-56453984 | Msa0363820:CDS |
| ACGGAGTAGAGAGAGATATT+AGG | 0.260530 | 3_1:+56456814 | None:intergenic |
| ATTACAAGGGGCTGGATCTT+TGG | 0.276108 | 3_1:+56453988 | None:intergenic |
| TATGTTAAGCACCTAAGATT+TGG | 0.294217 | 3_1:+56452205 | None:intergenic |
| CGGAGTAGAGAGAGATATTA+GGG | 0.294604 | 3_1:+56456815 | None:intergenic |
| GCTGGATCTTTGGAGAATTT+AGG | 0.296518 | 3_1:+56453998 | None:intergenic |
| GTTTGTACCGTCCAAATCTT+AGG | 0.305610 | 3_1:-56452216 | Msa0363820:three_prime_UTR |
| TACTGAAGCTGTGAAGATTC+TGG | 0.327730 | 3_1:-56452441 | Msa0363820:CDS |
| TAGGAATGAGACCCAGTCTA+TGG | 0.328096 | 3_1:+56454525 | None:intergenic |
| TTCTAAGTTCATGATGTAAT+CGG | 0.329327 | 3_1:+56456656 | None:intergenic |
| CACTGAAGTGGTTGCCTAAC+GGG | 0.329435 | 3_1:-56454102 | Msa0363820:CDS |
| GAAGGCGAAGAAGGAGGAGA+AGG | 0.359424 | 3_1:-56452889 | Msa0363820:CDS |
| TCTGGTGCTTATGCAGCATT+AGG | 0.369089 | 3_1:-56455553 | Msa0363820:CDS |
| AAGGGTCAACCTCGTCTTAC+CGG | 0.370642 | 3_1:-56454240 | Msa0363820:intron |
| GCTTCAGTAAACAGCACATC+AGG | 0.387361 | 3_1:+56452455 | None:intergenic |
| TAAAACCTGGATATTCAAAT+TGG | 0.389141 | 3_1:+56454486 | None:intergenic |
| ACAGATACCATACAATATTC+TGG | 0.390797 | 3_1:-56455571 | Msa0363820:CDS |
| AATTCTGTACATGATCAGTT+TGG | 0.392164 | 3_1:-56452340 | Msa0363820:three_prime_UTR |
| CGAAGTTCTTGCCCATAGAC+TGG | 0.394435 | 3_1:-56454537 | Msa0363820:CDS |
| TATGAAAGTTCACTCATTGT+TGG | 0.404231 | 3_1:-56452277 | Msa0363820:three_prime_UTR |
| CTAGTTACTATTGAATCAAC+TGG | 0.412801 | 3_1:-56452488 | Msa0363820:intron |
| CCCGACCAATTTGAATATCC+AGG | 0.417328 | 3_1:-56454491 | Msa0363820:intron |
| AGCTAAACTTGGACCTGGTC+AGG | 0.418480 | 3_1:-56453951 | Msa0363820:intron |
| AAGGCGAAGAAGGAGGAGAA+GGG | 0.427546 | 3_1:-56452888 | Msa0363820:CDS |
| CGAAAAGCATTGGCAACTGC+TGG | 0.428330 | 3_1:+56455427 | None:intergenic |
| CAACATGTTCGTTGTGAAAA+GGG | 0.429767 | 3_1:-56454258 | Msa0363820:CDS |
| ACAACATGTTCGTTGTGAAA+AGG | 0.437375 | 3_1:-56454259 | Msa0363820:CDS |
| TAACTTCTATCAAAATTTCA+AGG | 0.446196 | 3_1:-56455506 | Msa0363820:CDS |
| ATGAAAGTTCACTCATTGTT+GGG | 0.447554 | 3_1:-56452276 | Msa0363820:three_prime_UTR |
| AGATGAGTGGGAAGCGTTGA+AGG | 0.453951 | 3_1:+56456627 | None:intergenic |
| GAAGCGGAAGAAGGCGAAGA+AGG | 0.464921 | 3_1:-56452898 | Msa0363820:CDS |
| CAAGAACAGAATGGAGGAAG+AGG | 0.471453 | 3_1:-56456684 | Msa0363820:CDS |
| AGGCGAAGAAGGAGGAGAAG+GGG | 0.473102 | 3_1:-56452887 | Msa0363820:CDS |
| TTGTCCTAAAATGAATGAAA+AGG | 0.482111 | 3_1:-56452366 | Msa0363820:three_prime_UTR |
| GTGGTTTGGTAGCAGAAATA+CGG | 0.483182 | 3_1:+56456795 | None:intergenic |
| ACATCCAAATTACAAGGGGC+TGG | 0.484273 | 3_1:+56453980 | None:intergenic |
| GATATAGAAGATATTGGAAG+AGG | 0.486692 | 3_1:-56453172 | Msa0363820:intron |
| TGTACTCACGAAAGATGTTA+AGG | 0.487182 | 3_1:-56453242 | Msa0363820:CDS |
| GACATGGAGTTTGACATGAT+TGG | 0.487643 | 3_1:-56455457 | Msa0363820:CDS |
| CGATACCAAGCAGTAGCAAC+CGG | 0.487717 | 3_1:+56453377 | None:intergenic |
| CCTGGATATTCAAATTGGTC+GGG | 0.488273 | 3_1:+56454491 | None:intergenic |
| ACCTGGATATTCAAATTGGT+CGG | 0.492745 | 3_1:+56454490 | None:intergenic |
| TTGGTAAGACACATGCGAAA+TGG | 0.496915 | 3_1:-56453403 | Msa0363820:CDS |
| GAGAATTCTTCGAAAAGCAT+TGG | 0.497782 | 3_1:+56455417 | None:intergenic |
| GATGTTATAGTAGCTAAACT+TGG | 0.502751 | 3_1:-56453962 | Msa0363820:CDS |
| TCTAAGTTCATGATGTAATC+GGG | 0.512453 | 3_1:+56456657 | None:intergenic |
| TGAATGCATTGAATGACATC+CGG | 0.513709 | 3_1:-56452160 | Msa0363820:three_prime_UTR |
| GGTCTCCGGTTGCTACTGCT+TGG | 0.528704 | 3_1:-56453382 | Msa0363820:CDS |
| GAAAGATGTTAAGGATGAGT+TGG | 0.528798 | 3_1:-56453233 | Msa0363820:CDS |
| CTTGAAGCTCACGCTGTCAA+AGG | 0.530488 | 3_1:-56453428 | Msa0363820:CDS |
| GACACATGCGAAATGGTCTC+CGG | 0.531525 | 3_1:-56453396 | Msa0363820:CDS |
| GCTATAAGCTCACTCCCGTT+AGG | 0.534224 | 3_1:+56454088 | None:intergenic |
| ACTCTTTCAATAGCCATGGT+TGG | 0.537705 | 3_1:+56454593 | None:intergenic |
| ATATACTCTTTCAATAGCCA+TGG | 0.546326 | 3_1:+56454589 | None:intergenic |
| GCGAGCATGCACTTTGTGTA+GGG | 0.547116 | 3_1:-56452932 | Msa0363820:CDS |
| ATAAGCACCAGAATATTGTA+TGG | 0.550616 | 3_1:+56455564 | None:intergenic |
| TGCATAAGAGAAGCGGAAGA+AGG | 0.551993 | 3_1:-56452907 | Msa0363820:CDS |
| CGCGAGCATGCACTTTGTGT+AGG | 0.554669 | 3_1:-56452933 | Msa0363820:CDS |
| AGTTGATAACAGTGTACGGT+TGG | 0.555301 | 3_1:-56455530 | Msa0363820:CDS |
| ACTATAACATCCAAATTACA+AGG | 0.560647 | 3_1:+56453974 | None:intergenic |
| ATTGATGAACAAGAACAGAA+TGG | 0.562671 | 3_1:-56456693 | Msa0363820:CDS |
| GCTCACGCTGTCAAAGGCAT+TGG | 0.566987 | 3_1:-56453422 | Msa0363820:CDS |
| AGGAATGAGACCCAGTCTAT+GGG | 0.569217 | 3_1:+56454526 | None:intergenic |
| TCGAAGAATTCTCATAGCAG+AGG | 0.583840 | 3_1:-56455407 | Msa0363820:intron |
| GCGGAAGAAGGCGAAGAAGG+AGG | 0.584435 | 3_1:-56452895 | Msa0363820:CDS |
| GAAGTTCTTGCCCATAGACT+GGG | 0.586008 | 3_1:-56454536 | Msa0363820:CDS |
| AGATAGATAGTTACATGTTG+AGG | 0.587384 | 3_1:+56456564 | None:intergenic |
| CTTCAGTAAACAGCACATCA+GGG | 0.587393 | 3_1:+56452456 | None:intergenic |
| AAAGAAGAATCAAGAAAGCT+CGG | 0.588115 | 3_1:+56452394 | None:intergenic |
| TAGGAGTTGATAACAGTGTA+CGG | 0.591277 | 3_1:-56455534 | Msa0363820:CDS |
| TGGTCGGGATCAGCAGCGAT+AGG | 0.593736 | 3_1:+56454506 | None:intergenic |
| ACGCATCACGGATGAAGACA+TGG | 0.597126 | 3_1:-56455473 | Msa0363820:CDS |
| TGAAGATGAATCGATGGCAT+CGG | 0.599176 | 3_1:-56456718 | Msa0363820:CDS |
| ACACTGAAGTGGTTGCCTAA+CGG | 0.604989 | 3_1:-56454103 | Msa0363820:CDS |
| GTCGTCTGAAGATGAATCGA+TGG | 0.614778 | 3_1:-56456724 | Msa0363820:CDS |
| CTATAACATCCAAATTACAA+GGG | 0.623245 | 3_1:+56453975 | None:intergenic |
| TGAAATCAGATACACTGAAG+TGG | 0.623846 | 3_1:-56454114 | Msa0363820:CDS |
| TTCAGTAAACAGCACATCAG+GGG | 0.627383 | 3_1:+56452457 | None:intergenic |
| TTAAGCACCTAAGATTTGGA+CGG | 0.628272 | 3_1:+56452209 | None:intergenic |
| TATAACATCCAAATTACAAG+GGG | 0.629035 | 3_1:+56453976 | None:intergenic |
| GGGAGTGAGCTTATAGCTGA+AGG | 0.635380 | 3_1:-56454082 | Msa0363820:CDS |
| TAGGGAATGCATAAGAGAAG+CGG | 0.637709 | 3_1:-56452914 | Msa0363820:CDS |
| GATGAACAAGAACAGAATGG+AGG | 0.659810 | 3_1:-56456690 | Msa0363820:CDS |
| ATAGTAGCTAAACTTGGACC+TGG | 0.667892 | 3_1:-56453956 | Msa0363820:CDS |
| GGTTGAAGTGAAACGCATCA+CGG | 0.668140 | 3_1:-56455485 | Msa0363820:CDS |
| AGTCATTTACCGGTAAGACG+AGG | 0.670733 | 3_1:+56454231 | None:intergenic |
| TCAGTAAACAGCACATCAGG+GGG | 0.672614 | 3_1:+56452458 | None:intergenic |
| TTATAAATAGATGGTGCCGG+AGG | 0.682634 | 3_1:-56454315 | Msa0363820:intron |
| TTGGTATCGAATGCTTCCCG+AGG | 0.698025 | 3_1:-56453363 | Msa0363820:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTGATTTTGAATATAT+CGG | - | chr3_1:56453642-56453661 | Msa0363820:intron | 10.0% |
| !!! | TTAATATTCATAATTTTTTG+TGG | - | chr3_1:56453855-56453874 | Msa0363820:intron | 10.0% |
| !! | TAAAATTATAAAAACGATAA+AGG | + | chr3_1:56454364-56454383 | None:intergenic | 10.0% |
| !!! | TTTATCGTTTTTATAATTTT+AGG | - | chr3_1:56454363-56454382 | Msa0363820:intron | 10.0% |
| !!! | ATAATTGATTTTATGAAAAA+AGG | - | chr3_1:56456796-56456815 | Msa0363820:five_prime_UTR | 10.0% |
| !! | GAATAAGAAAAATAATGAAA+AGG | + | chr3_1:56452458-56452477 | None:intergenic | 15.0% |
| !!! | ATTTAACATTATTCATGTTT+TGG | - | chr3_1:56453378-56453397 | Msa0363820:CDS | 15.0% |
| !! | TGATTCATATAAGAATAAAA+AGG | - | chr3_1:56453755-56453774 | Msa0363820:intron | 15.0% |
| !! | GATTCATATAAGAATAAAAA+GGG | - | chr3_1:56453756-56453775 | Msa0363820:intron | 15.0% |
| !! | CATCTATTTATAAAAAAGAA+AGG | + | chr3_1:56454659-56454678 | None:intergenic | 15.0% |
| !!! | CTTTCTTTTTTATAAATAGA+TGG | - | chr3_1:56454657-56454676 | Msa0363820:intron | 15.0% |
| !! | AATACTGGTAAAAATATATT+AGG | + | chr3_1:56456355-56456374 | None:intergenic | 15.0% |
| !! | TTAGTTAATATACTTCTGTT+TGG | - | chr3_1:56452701-56452720 | Msa0363820:intron | 20.0% |
| !! | TATAGAAATAGCTTATACAT+AGG | + | chr3_1:56452778-56452797 | None:intergenic | 20.0% |
| !!! | TTGTTTGAATTTGCTTATTT+GGG | + | chr3_1:56453104-56453123 | None:intergenic | 20.0% |
| !!! | GTTTGATATTTTTGTTTGTT+CGG | - | chr3_1:56453346-56453365 | Msa0363820:intron | 20.0% |
| !! | TAACTTCTATCAAAATTTCA+AGG | - | chr3_1:56453475-56453494 | Msa0363820:intron | 20.0% |
| !!! | TATATCGGTCAATTTTATTA+AGG | - | chr3_1:56453657-56453676 | Msa0363820:intron | 20.0% |
| !!! | TTATTTAGAACACTAACATT+AGG | - | chr3_1:56453791-56453810 | Msa0363820:intron | 20.0% |
| !!! | TTATGCAATTCTTTTGTTAT+AGG | - | chr3_1:56453919-56453938 | Msa0363820:intron | 20.0% |
| !! | ATAAACAAGAGAAATTAACT+TGG | + | chr3_1:56453967-56453986 | None:intergenic | 20.0% |
| !!! | AATTTTCTTCTTGTTAAAAG+TGG | + | chr3_1:56454045-56454064 | None:intergenic | 20.0% |
| !! | TTGTGTGATAAATAGAAAAT+TGG | - | chr3_1:56454570-56454589 | Msa0363820:CDS | 20.0% |
| !!! | TTAAAAGTCGTAAATGTTTT+TGG | + | chr3_1:56454950-56454969 | None:intergenic | 20.0% |
| !!! | GTTTTTGATATAGAAGATAT+TGG | - | chr3_1:56455803-56455822 | Msa0363820:intron | 20.0% |
| !! | AGATATAAAAATCTAACACT+AGG | + | chr3_1:56455859-56455878 | None:intergenic | 20.0% |
| !! | GGCATATTAAATTAAATTCA+TGG | - | chr3_1:56456181-56456200 | Msa0363820:intron | 20.0% |
| !! | CGTTAAAAAAAATACTTCAT+TGG | + | chr3_1:56456252-56456271 | None:intergenic | 20.0% |
| !! | TACATATCTTAAACTAATAC+TGG | + | chr3_1:56456370-56456389 | None:intergenic | 20.0% |
| !!! | TTTTCCTTTTCATTCATTTT+AGG | + | chr3_1:56456622-56456641 | None:intergenic | 20.0% |
| ! | TTCTAAGTTCATGATGTAAT+CGG | + | chr3_1:56452328-56452347 | None:intergenic | 25.0% |
| !!! | GTTAGAAACTTTTCTGAAAT+GGG | + | chr3_1:56452554-56452573 | None:intergenic | 25.0% |
| !!! | AGTTAGAAACTTTTCTGAAA+TGG | + | chr3_1:56452555-56452574 | None:intergenic | 25.0% |
| ! | AAAGTTTCTAACTTCATAAC+TGG | - | chr3_1:56452562-56452581 | Msa0363820:intron | 25.0% |
| ! | AAGTTTCTAACTTCATAACT+GGG | - | chr3_1:56452563-56452582 | Msa0363820:intron | 25.0% |
| !! | ACTTTGGAAGGATAAAAATT+AGG | - | chr3_1:56452587-56452606 | Msa0363820:intron | 25.0% |
| ! | TTGTGTTTGTAAGCTTATAA+TGG | - | chr3_1:56452652-56452671 | Msa0363820:intron | 25.0% |
| ! | GACAATAAAATGAAGTCAAA+CGG | - | chr3_1:56452801-56452820 | Msa0363820:intron | 25.0% |
| ! | AGCTTACAAAAATAGCTTAT+AGG | + | chr3_1:56452844-56452863 | None:intergenic | 25.0% |
| ! | AAGCTATACTATACAACTTA+TGG | - | chr3_1:56452859-56452878 | Msa0363820:CDS | 25.0% |
| ! | ACTATACAACTTATGGATAT+AGG | - | chr3_1:56452866-56452885 | Msa0363820:CDS | 25.0% |
| !! | GTTGTTTGAATTTGCTTATT+TGG | + | chr3_1:56453105-56453124 | None:intergenic | 25.0% |
| ! | ACAATTTGTGAAAAAACTTG+TGG | + | chr3_1:56453158-56453177 | None:intergenic | 25.0% |
| ! | ACCAGAAGATAAAATCAATT+AGG | - | chr3_1:56453193-56453212 | Msa0363820:CDS | 25.0% |
| ! | ATCATCACAGAAAACAAAAT+GGG | + | chr3_1:56453619-56453638 | None:intergenic | 25.0% |
| ! | AATCATCACAGAAAACAAAA+TGG | + | chr3_1:56453620-56453639 | None:intergenic | 25.0% |
| !! | TGTTCTAAATAATCAGTTGA+AGG | + | chr3_1:56453783-56453802 | None:intergenic | 25.0% |
| ! | TAATACCATGTTAGTATGTT+CGG | - | chr3_1:56453883-56453902 | Msa0363820:intron | 25.0% |
| ! | TTATAGGATGTATTGTTTCA+TGG | - | chr3_1:56453935-56453954 | Msa0363820:intron | 25.0% |
| !! | GTTTATCGACTATTATTTCA+TGG | - | chr3_1:56453981-56454000 | Msa0363820:CDS | 25.0% |
| ! | TTAAATTTGTAATAAGCCAG+AGG | - | chr3_1:56454094-56454113 | Msa0363820:CDS | 25.0% |
| ! | TAAAACCTGGATATTCAAAT+TGG | + | chr3_1:56454498-56454517 | None:intergenic | 25.0% |
| ! | GAAATAATATGCATGTTGTT+TGG | - | chr3_1:56454592-56454611 | Msa0363820:CDS | 25.0% |
| !! | ATATTCAACCTTGTTATACA+AGG | + | chr3_1:56454626-56454645 | None:intergenic | 25.0% |
| !! | TTTTTATAAATAGATGGTGC+CGG | - | chr3_1:56454663-56454682 | Msa0363820:intron | 25.0% |
| ! | TATAACATCCAAATTACAAG+GGG | + | chr3_1:56455008-56455027 | None:intergenic | 25.0% |
| ! | CTATAACATCCAAATTACAA+GGG | + | chr3_1:56455009-56455028 | None:intergenic | 25.0% |
| ! | ACTATAACATCCAAATTACA+AGG | + | chr3_1:56455010-56455029 | None:intergenic | 25.0% |
| ! | TAGAAAATAAACAGAGAGAA+GGG | + | chr3_1:56455063-56455082 | None:intergenic | 25.0% |
| ! | ATAGAAAATAAACAGAGAGA+AGG | + | chr3_1:56455064-56455083 | None:intergenic | 25.0% |
| !!! | TTATGAAATTGGTTTGGTAT+AGG | - | chr3_1:56455251-56455270 | Msa0363820:intron | 25.0% |
| ! | TCTATATCAAAAACTTTAGC+TGG | + | chr3_1:56455797-56455816 | None:intergenic | 25.0% |
| ! | TTTCATTTGTAAGTATTACG+TGG | - | chr3_1:56456160-56456179 | Msa0363820:intron | 25.0% |
| ! | ACTAAAATTCTTCTATGTTC+AGG | + | chr3_1:56456226-56456245 | None:intergenic | 25.0% |
| ! | AGATCAAGATGATAAATAAC+CGG | - | chr3_1:56456280-56456299 | Msa0363820:intron | 25.0% |
| ! | TTTGAATTTGTCAAAATCAC+CGG | + | chr3_1:56456302-56456321 | None:intergenic | 25.0% |
| ! | AACTAAAAATTGTGCGAATT+TGG | - | chr3_1:56456395-56456414 | Msa0363820:intron | 25.0% |
| ! | TTGTCCTAAAATGAATGAAA+AGG | - | chr3_1:56456615-56456634 | Msa0363820:CDS | 25.0% |
| ATTGATGAACAAGAACAGAA+TGG | - | chr3_1:56452288-56452307 | Msa0363820:three_prime_UTR | 30.0% | |
| TCTAAGTTCATGATGTAATC+GGG | + | chr3_1:56452327-56452346 | None:intergenic | 30.0% | |
| !!! | TTTTGAAGTTCAAGATGAGT+GGG | + | chr3_1:56452369-56452388 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTTCAAGATGAG+TGG | + | chr3_1:56452370-56452389 | None:intergenic | 30.0% |
| AGATAGATAGTTACATGTTG+AGG | + | chr3_1:56452420-56452439 | None:intergenic | 30.0% | |
| ! | ACTCTGTTTTGTATCTTTGA+AGG | - | chr3_1:56452622-56452641 | Msa0363820:intron | 30.0% |
| GCATAAATACCTATCATGAT+AGG | - | chr3_1:56452908-56452927 | Msa0363820:CDS | 30.0% | |
| !! | GCCTAATTGATTTTATCTTC+TGG | + | chr3_1:56453197-56453216 | None:intergenic | 30.0% |
| AATACAAATGCGGCTTAATT+GGG | - | chr3_1:56453218-56453237 | Msa0363820:CDS | 30.0% | |
| CATGTACAAATTCGTTCTAT+TGG | - | chr3_1:56453308-56453327 | Msa0363820:intron | 30.0% | |
| TACAAATTCGTTCTATTGGT+GGG | - | chr3_1:56453312-56453331 | Msa0363820:intron | 30.0% | |
| ACAGATACCATACAATATTC+TGG | - | chr3_1:56453410-56453429 | Msa0363820:CDS | 30.0% | |
| ATAAGCACCAGAATATTGTA+TGG | + | chr3_1:56453420-56453439 | None:intergenic | 30.0% | |
| TCATCACAGAAAACAAAATG+GGG | + | chr3_1:56453618-56453637 | None:intergenic | 30.0% | |
| AATAAAAGGCAAAAGTTCAC+TGG | + | chr3_1:56453821-56453840 | None:intergenic | 30.0% | |
| ! | ACTTTTGCCTTTTATTGAGA+TGG | - | chr3_1:56453825-56453844 | Msa0363820:intron | 30.0% |
| ACTACTTCCATCTCAATAAA+AGG | + | chr3_1:56453835-56453854 | None:intergenic | 30.0% | |
| CAAGAAGAAAATTTGCAACA+AGG | - | chr3_1:56454052-56454071 | Msa0363820:CDS | 30.0% | |
| AAAATCTGATTACCGCTATT+AGG | + | chr3_1:56454330-56454349 | None:intergenic | 30.0% | |
| !!! | ATAATTTTAGGTTCCAACCA+TGG | - | chr3_1:56454375-56454394 | Msa0363820:intron | 30.0% |
| ATATACTCTTTCAATAGCCA+TGG | + | chr3_1:56454395-56454414 | None:intergenic | 30.0% | |
| GTTAGTGTAGATATAAAACC+TGG | + | chr3_1:56454511-56454530 | None:intergenic | 30.0% | |
| ACAAGAAAGTCAGATAATCA+AGG | + | chr3_1:56454554-56454573 | None:intergenic | 30.0% | |
| ! | ATAATATGCATGTTGTTTGG+TGG | - | chr3_1:56454595-56454614 | Msa0363820:CDS | 30.0% |
| ! | AAGAGTTTCAAGTCATTTAC+CGG | + | chr3_1:56454763-56454782 | None:intergenic | 30.0% |
| TATTGTAATATCACCAGACA+AGG | + | chr3_1:56454835-56454854 | None:intergenic | 30.0% | |
| !!! | GTCGTAAATGTTTTTGGTTT+TGG | + | chr3_1:56454944-56454963 | None:intergenic | 30.0% |
| GATGTTATAGTAGCTAAACT+TGG | - | chr3_1:56455019-56455038 | Msa0363820:intron | 30.0% | |
| AGAAAATAAACAGAGAGAAG+GGG | + | chr3_1:56455062-56455081 | None:intergenic | 30.0% | |
| AATGTAGATCTAATGAACTC+AGG | - | chr3_1:56455107-56455126 | Msa0363820:intron | 30.0% | |
| !! | ATAGCAAACTTGCTAAGATA+GGG | + | chr3_1:56455152-56455171 | None:intergenic | 30.0% |
| !! | AATAGCAAACTTGCTAAGAT+AGG | + | chr3_1:56455153-56455172 | None:intergenic | 30.0% |
| !! | AAGTTTGCTATTAATCCAAC+AGG | - | chr3_1:56455161-56455180 | Msa0363820:intron | 30.0% |
| TGATTCAAATTCTGTTGAGT+TGG | - | chr3_1:56455197-56455216 | Msa0363820:intron | 30.0% | |
| GTTCTGGTATGTTATGAAAT+TGG | - | chr3_1:56455240-56455259 | Msa0363820:intron | 30.0% | |
| GGTATGTTATGAAATTGGTT+TGG | - | chr3_1:56455245-56455264 | Msa0363820:intron | 30.0% | |
| TTATGTTATGTACTCCCTAA+CGG | - | chr3_1:56455343-56455362 | Msa0363820:intron | 30.0% | |
| ! | TACAACTTCCAGTTTTCTAT+AGG | + | chr3_1:56455481-56455500 | None:intergenic | 30.0% |
| ! | TGCTAACCACATACTTTTAT+AGG | - | chr3_1:56455522-56455541 | Msa0363820:CDS | 30.0% |
| ! | CGATTTCCTATAAAAGTATG+TGG | + | chr3_1:56455531-56455550 | None:intergenic | 30.0% |
| !! | ATGCTTTGCTTTTATTCTCT+AGG | - | chr3_1:56455715-56455734 | Msa0363820:intron | 30.0% |
| GATATAGAAGATATTGGAAG+AGG | - | chr3_1:56455809-56455828 | Msa0363820:intron | 30.0% | |
| !! | AAATTGTGCGAATTTGGTTT+TGG | - | chr3_1:56456401-56456420 | Msa0363820:intron | 30.0% |
| CAGTAATCCGTATAAAAACT+CGG | + | chr3_1:56456427-56456446 | None:intergenic | 30.0% | |
| CACACATGTAAGATATTTCA+GGG | + | chr3_1:56456458-56456477 | None:intergenic | 30.0% | |
| ACACACATGTAAGATATTTC+AGG | + | chr3_1:56456459-56456478 | None:intergenic | 30.0% | |
| CTAGTTACTATTGAATCAAC+TGG | - | chr3_1:56456493-56456512 | Msa0363820:intron | 30.0% | |
| AAAGAAGAATCAAGAAAGCT+CGG | + | chr3_1:56456590-56456609 | None:intergenic | 30.0% | |
| AATTCTGTACATGATCAGTT+TGG | - | chr3_1:56456641-56456660 | Msa0363820:CDS | 30.0% | |
| TATGAAAGTTCACTCATTGT+TGG | - | chr3_1:56456704-56456723 | Msa0363820:CDS | 30.0% | |
| ATGAAAGTTCACTCATTGTT+GGG | - | chr3_1:56456705-56456724 | Msa0363820:CDS | 30.0% | |
| TATGTTAAGCACCTAAGATT+TGG | + | chr3_1:56456779-56456798 | None:intergenic | 30.0% | |
| AGAGAGAGATATTAGGGTTT+AGG | + | chr3_1:56452163-56452182 | None:intergenic | 35.0% | |
| AACTTCATAACTGGGTACTT+TGG | - | chr3_1:56452571-56452590 | Msa0363820:intron | 35.0% | |
| ACATAAGTGCCTATCATGAT+AGG | + | chr3_1:56452920-56452939 | None:intergenic | 35.0% | |
| !! | GCTATTTTCACAAGCTATCT+TGG | - | chr3_1:56452976-56452995 | Msa0363820:intron | 35.0% |
| GCAAATTCAAACAACCACAT+AGG | - | chr3_1:56453110-56453129 | Msa0363820:intron | 35.0% | |
| ! | GAAACTGTTTTCAACCTATG+TGG | + | chr3_1:56453127-56453146 | None:intergenic | 35.0% |
| CAATTAGGCCAATACAAATG+CGG | - | chr3_1:56453208-56453227 | Msa0363820:CDS | 35.0% | |
| CAATTAAGCCGCATTTGTAT+TGG | + | chr3_1:56453219-56453238 | None:intergenic | 35.0% | |
| CAATACAAATGCGGCTTAAT+TGG | - | chr3_1:56453217-56453236 | Msa0363820:CDS | 35.0% | |
| GTACAAATTCGTTCTATTGG+TGG | - | chr3_1:56453311-56453330 | Msa0363820:intron | 35.0% | |
| !! | TAGGAGTTGATAACAGTGTA+CGG | - | chr3_1:56453447-56453466 | Msa0363820:intron | 35.0% |
| ! | GAGAATTCTTCGAAAAGCAT+TGG | + | chr3_1:56453567-56453586 | None:intergenic | 35.0% |
| ATCACAGAAAACAAAATGGG+GGG | + | chr3_1:56453616-56453635 | None:intergenic | 35.0% | |
| CATCACAGAAAACAAAATGG+GGG | + | chr3_1:56453617-56453636 | None:intergenic | 35.0% | |
| CATTTCCGAACATACTAACA+TGG | + | chr3_1:56453891-56453910 | None:intergenic | 35.0% | |
| CATGTTAGTATGTTCGGAAA+TGG | - | chr3_1:56453889-56453908 | Msa0363820:intron | 35.0% | |
| TGTAACATGTAATGCATAGC+AGG | + | chr3_1:56454177-56454196 | None:intergenic | 35.0% | |
| GTGTAGTTTAAGCCTAATAG+CGG | - | chr3_1:56454315-56454334 | Msa0363820:intron | 35.0% | |
| ACCTGGATATTCAAATTGGT+CGG | + | chr3_1:56454494-56454513 | None:intergenic | 35.0% | |
| ! | CTTTTCATTGTTTTCACCTC+CGG | + | chr3_1:56454685-56454704 | None:intergenic | 35.0% |
| ACAACATGTTCGTTGTGAAA+AGG | - | chr3_1:56454722-56454741 | Msa0363820:intron | 35.0% | |
| CAACATGTTCGTTGTGAAAA+GGG | - | chr3_1:56454723-56454742 | Msa0363820:intron | 35.0% | |
| TGAAATCAGATACACTGAAG+TGG | - | chr3_1:56454867-56454886 | Msa0363820:intron | 35.0% | |
| AAAATAAACAGAGAGAAGGG+GGG | + | chr3_1:56455060-56455079 | None:intergenic | 35.0% | |
| GAAAATAAACAGAGAGAAGG+GGG | + | chr3_1:56455061-56455080 | None:intergenic | 35.0% | |
| TTCTATTAACACCCACACTA+AGG | - | chr3_1:56455078-56455097 | Msa0363820:intron | 35.0% | |
| ! | ACATTTGACTTCCTTAGTGT+GGG | + | chr3_1:56455092-56455111 | None:intergenic | 35.0% |
| ! | TACATTTGACTTCCTTAGTG+TGG | + | chr3_1:56455093-56455112 | None:intergenic | 35.0% |
| GAACTCAGGAACTATAAAAC+AGG | - | chr3_1:56455121-56455140 | Msa0363820:intron | 35.0% | |
| ! | CATTAAACTTGATAGCCTGT+TGG | + | chr3_1:56455179-56455198 | None:intergenic | 35.0% |
| !! | TGAAATTGGTTTGGTATAGG+TGG | - | chr3_1:56455254-56455273 | Msa0363820:intron | 35.0% |
| AAGTCAAAACACTCGTATCA+AGG | + | chr3_1:56455430-56455449 | None:intergenic | 35.0% | |
| ! | AACTTCCAGTTTTCTATAGG+AGG | + | chr3_1:56455478-56455497 | None:intergenic | 35.0% |
| ATATATGATGTTCCCTACCT+CGG | + | chr3_1:56455638-56455657 | None:intergenic | 35.0% | |
| AGCAAAGCATACAAATGTCA+GGG | + | chr3_1:56455705-56455724 | None:intergenic | 35.0% | |
| AAGCAAAGCATACAAATGTC+AGG | + | chr3_1:56455706-56455725 | None:intergenic | 35.0% | |
| TGTACTCACGAAAGATGTTA+AGG | - | chr3_1:56455739-56455758 | Msa0363820:intron | 35.0% | |
| GAAAGATGTTAAGGATGAGT+TGG | - | chr3_1:56455748-56455767 | Msa0363820:intron | 35.0% | |
| ACGATGACGCAAAATCAATT+TGG | + | chr3_1:56455917-56455936 | None:intergenic | 35.0% | |
| ATAAGAGAAAGCCAAAGAGA+TGG | + | chr3_1:56455972-56455991 | None:intergenic | 35.0% | |
| AGTGTCTTGATTGTTTGTCT+CGG | - | chr3_1:56456329-56456348 | Msa0363820:intron | 35.0% | |
| !! | GTTTTGGCCGAGTTTTTATA+CGG | - | chr3_1:56456417-56456436 | Msa0363820:intron | 35.0% |
| TGTAAGATATTTCAGGGACT+TGG | + | chr3_1:56456452-56456471 | None:intergenic | 35.0% | |
| TTAAGCACCTAAGATTTGGA+CGG | + | chr3_1:56456775-56456794 | None:intergenic | 35.0% | |
| CGGAGTAGAGAGAGATATTA+GGG | + | chr3_1:56452169-56452188 | None:intergenic | 40.0% | |
| ACGGAGTAGAGAGAGATATT+AGG | + | chr3_1:56452170-56452189 | None:intergenic | 40.0% | |
| !! | GTGGTTTGGTAGCAGAAATA+CGG | + | chr3_1:56452189-56452208 | None:intergenic | 40.0% |
| TGAAGATGAATCGATGGCAT+CGG | - | chr3_1:56452263-56452282 | Msa0363820:three_prime_UTR | 40.0% | |
| GATGAACAAGAACAGAATGG+AGG | - | chr3_1:56452291-56452310 | Msa0363820:three_prime_UTR | 40.0% | |
| TCATAACTGGGTACTTTGGA+AGG | - | chr3_1:56452575-56452594 | Msa0363820:intron | 40.0% | |
| ATGCTATCAGCTGCAAAACA+GGG | + | chr3_1:56452892-56452911 | None:intergenic | 40.0% | |
| TATGCTATCAGCTGCAAAAC+AGG | + | chr3_1:56452893-56452912 | None:intergenic | 40.0% | |
| AACCAGATACAGAGAGAAGA+CGG | + | chr3_1:56453261-56453280 | None:intergenic | 40.0% | |
| ! | CTATTGGTGGGTATTGTTTC+TGG | - | chr3_1:56453324-56453343 | Msa0363820:intron | 40.0% |
| !! | AGTTGATAACAGTGTACGGT+TGG | - | chr3_1:56453451-56453470 | Msa0363820:intron | 40.0% |
| GACATGGAGTTTGACATGAT+TGG | - | chr3_1:56453524-56453543 | Msa0363820:intron | 40.0% | |
| TCGAAGAATTCTCATAGCAG+AGG | - | chr3_1:56453574-56453593 | Msa0363820:intron | 40.0% | |
| TCACAGAAAACAAAATGGGG+GGG | + | chr3_1:56453615-56453634 | None:intergenic | 40.0% | |
| ACTCTTTCAATAGCCATGGT+TGG | + | chr3_1:56454391-56454410 | None:intergenic | 40.0% | |
| CCTGGATATTCAAATTGGTC+GGG | + | chr3_1:56454493-56454512 | None:intergenic | 40.0% | |
| TGGACACTCCTTGTATAACA+AGG | - | chr3_1:56454615-56454634 | Msa0363820:intron | 40.0% | |
| ! | TTATAAATAGATGGTGCCGG+AGG | - | chr3_1:56454666-56454685 | Msa0363820:intron | 40.0% |
| CAGCTATTTGATTCCTTGTC+TGG | - | chr3_1:56454819-56454838 | Msa0363820:intron | 40.0% | |
| ! | GCTGGATCTTTGGAGAATTT+AGG | + | chr3_1:56454986-56455005 | None:intergenic | 40.0% |
| ATAGTAGCTAAACTTGGACC+TGG | - | chr3_1:56455025-56455044 | Msa0363820:intron | 40.0% | |
| AAATAAACAGAGAGAAGGGG+GGG | + | chr3_1:56455059-56455078 | None:intergenic | 40.0% | |
| GTGATGCTATGTATGTGTTC+TGG | - | chr3_1:56455224-56455243 | Msa0363820:intron | 40.0% | |
| !! | ATTGGTTTGGTATAGGTGGA+CGG | - | chr3_1:56455258-56455277 | Msa0363820:intron | 40.0% |
| GCCTTACCAGTTGAGTTTAT+GGG | - | chr3_1:56455365-56455384 | Msa0363820:intron | 40.0% | |
| TCCCATAAACTCAACTGGTA+AGG | + | chr3_1:56455369-56455388 | None:intergenic | 40.0% | |
| CATGTCCTCCTATAGAAAAC+TGG | - | chr3_1:56455470-56455489 | Msa0363820:CDS | 40.0% | |
| TTGGTAAGACACATGCGAAA+TGG | - | chr3_1:56455578-56455597 | Msa0363820:intron | 40.0% | |
| TATATGATGTTCCCTACCTC+GGG | + | chr3_1:56455637-56455656 | None:intergenic | 40.0% | |
| ! | CTTTCTGTTCTGAACCATGA+TGG | - | chr3_1:56455877-56455896 | Msa0363820:intron | 40.0% |
| CCAATAATACCTCACCATCA+TGG | + | chr3_1:56455894-56455913 | None:intergenic | 40.0% | |
| ! | CCATGATGGTGAGGTATTAT+TGG | - | chr3_1:56455891-56455910 | Msa0363820:intron | 40.0% |
| ATCTCAAGCTTCCATCTCTT+TGG | - | chr3_1:56455958-56455977 | Msa0363820:intron | 40.0% | |
| GATTTGATTGTTGTGTGCAC+AGG | - | chr3_1:56455999-56456018 | Msa0363820:intron | 40.0% | |
| TGTGTGCACAGGTAGAAAAA+AGG | - | chr3_1:56456010-56456029 | Msa0363820:intron | 40.0% | |
| TAGGGAATGCATAAGAGAAG+CGG | - | chr3_1:56456067-56456086 | Msa0363820:intron | 40.0% | |
| TTCAGTAAACAGCACATCAG+GGG | + | chr3_1:56456527-56456546 | None:intergenic | 40.0% | |
| CTTCAGTAAACAGCACATCA+GGG | + | chr3_1:56456528-56456547 | None:intergenic | 40.0% | |
| TACTGAAGCTGTGAAGATTC+TGG | - | chr3_1:56456540-56456559 | Msa0363820:intron | 40.0% | |
| GTTTGTACCGTCCAAATCTT+AGG | - | chr3_1:56456765-56456784 | Msa0363820:intron | 40.0% | |
| GTCGTCTGAAGATGAATCGA+TGG | - | chr3_1:56452257-56452276 | Msa0363820:three_prime_UTR | 45.0% | |
| CAAGAACAGAATGGAGGAAG+AGG | - | chr3_1:56452297-56452316 | Msa0363820:three_prime_UTR | 45.0% | |
| TAGCATAAGCACCTGTGAGA+CGG | + | chr3_1:56453072-56453091 | None:intergenic | 45.0% | |
| CAGAGAGAAGACGGGAATAA+AGG | + | chr3_1:56453252-56453271 | None:intergenic | 45.0% | |
| ACCAGATACAGAGAGAAGAC+GGG | + | chr3_1:56453260-56453279 | None:intergenic | 45.0% | |
| TCTGGTGCTTATGCAGCATT+AGG | - | chr3_1:56453428-56453447 | Msa0363820:CDS | 45.0% | |
| GGTTGAAGTGAAACGCATCA+CGG | - | chr3_1:56453496-56453515 | Msa0363820:intron | 45.0% | |
| GAAGTTCTTGCCCATAGACT+GGG | - | chr3_1:56454445-56454464 | Msa0363820:intron | 45.0% | |
| AGGAATGAGACCCAGTCTAT+GGG | + | chr3_1:56454458-56454477 | None:intergenic | 45.0% | |
| TAGGAATGAGACCCAGTCTA+TGG | + | chr3_1:56454459-56454478 | None:intergenic | 45.0% | |
| CCCGACCAATTTGAATATCC+AGG | - | chr3_1:56454490-56454509 | Msa0363820:intron | 45.0% | |
| AGTCATTTACCGGTAAGACG+AGG | + | chr3_1:56454753-56454772 | None:intergenic | 45.0% | |
| ACACTGAAGTGGTTGCCTAA+CGG | - | chr3_1:56454878-56454897 | Msa0363820:intron | 45.0% | |
| ! | TTTTGGATCAGCAGCTGACT+TGG | + | chr3_1:56454927-56454946 | None:intergenic | 45.0% |
| ATTACAAGGGGCTGGATCTT+TGG | + | chr3_1:56454996-56455015 | None:intergenic | 45.0% | |
| AGATCCAGCCCCTTGTAATT+TGG | - | chr3_1:56454997-56455016 | Msa0363820:intron | 45.0% | |
| ACATCCAAATTACAAGGGGC+TGG | + | chr3_1:56455004-56455023 | None:intergenic | 45.0% | |
| GGCCTTACCAGTTGAGTTTA+TGG | - | chr3_1:56455364-56455383 | Msa0363820:intron | 45.0% | |
| TGGCATCCCATAAACTCAAC+TGG | + | chr3_1:56455374-56455393 | None:intergenic | 45.0% | |
| ! | TGTTCTGAACCATGATGGTG+AGG | - | chr3_1:56455882-56455901 | Msa0363820:intron | 45.0% |
| CACAGGTAGAAAAAAGGCTG+TGG | - | chr3_1:56456016-56456035 | Msa0363820:intron | 45.0% | |
| TGCATAAGAGAAGCGGAAGA+AGG | - | chr3_1:56456074-56456093 | Msa0363820:intron | 45.0% | |
| AAGGAGGAGAAGGGGAAAAA+TGG | - | chr3_1:56456102-56456121 | Msa0363820:intron | 45.0% | |
| TCAGTAAACAGCACATCAGG+GGG | + | chr3_1:56456526-56456545 | None:intergenic | 45.0% | |
| GCTTCAGTAAACAGCACATC+AGG | + | chr3_1:56456529-56456548 | None:intergenic | 45.0% | |
| CTCTCTCTCTCTTCGTGGTT+TGG | + | chr3_1:56452203-56452222 | None:intergenic | 50.0% | |
| TCTCTCTCTCTCTCTCTTCG+TGG | + | chr3_1:56452208-56452227 | None:intergenic | 50.0% | |
| !! | AGATGAGTGGGAAGCGTTGA+AGG | + | chr3_1:56452357-56452376 | None:intergenic | 50.0% |
| ! | GTTTTCCCAAACCGTCTCAC+AGG | - | chr3_1:56453058-56453077 | Msa0363820:intron | 50.0% |
| AAGCACCTGTGAGACGGTTT+GGG | + | chr3_1:56453066-56453085 | None:intergenic | 50.0% | |
| TAAGCACCTGTGAGACGGTT+TGG | + | chr3_1:56453067-56453086 | None:intergenic | 50.0% | |
| TCCCGTCTTCTCTCTGTATC+TGG | - | chr3_1:56453256-56453275 | Msa0363820:intron | 50.0% | |
| ACGCATCACGGATGAAGACA+TGG | - | chr3_1:56453508-56453527 | Msa0363820:intron | 50.0% | |
| !! | CGAAAAGCATTGGCAACTGC+TGG | + | chr3_1:56453557-56453576 | None:intergenic | 50.0% |
| CAGAAAACAAAATGGGGGGG+TGG | + | chr3_1:56453612-56453631 | None:intergenic | 50.0% | |
| AGGAGTCCAGTCCTATTGCA+TGG | - | chr3_1:56454114-56454133 | Msa0363820:CDS | 50.0% | |
| AGTCCAGTCCTATTGCATGG+AGG | - | chr3_1:56454117-56454136 | Msa0363820:CDS | 50.0% | |
| GTCCAGTCCTATTGCATGGA+GGG | - | chr3_1:56454118-56454137 | Msa0363820:intron | 50.0% | |
| AGTCCTATTGCATGGAGGGA+GGG | - | chr3_1:56454122-56454141 | Msa0363820:intron | 50.0% | |
| TATCCCTCCCTCCATGCAAT+AGG | + | chr3_1:56454128-56454147 | None:intergenic | 50.0% | |
| CGAAGTTCTTGCCCATAGAC+TGG | - | chr3_1:56454444-56454463 | Msa0363820:intron | 50.0% | |
| AAGGGTCAACCTCGTCTTAC+CGG | - | chr3_1:56454741-56454760 | Msa0363820:intron | 50.0% | |
| CACTGAAGTGGTTGCCTAAC+GGG | - | chr3_1:56454879-56454898 | Msa0363820:intron | 50.0% | |
| GCTATAAGCTCACTCCCGTT+AGG | + | chr3_1:56454896-56454915 | None:intergenic | 50.0% | |
| GGGAGTGAGCTTATAGCTGA+AGG | - | chr3_1:56454899-56454918 | Msa0363820:intron | 50.0% | |
| AGCTAAACTTGGACCTGGTC+AGG | - | chr3_1:56455030-56455049 | Msa0363820:intron | 50.0% | |
| CTCAACTGGTAAGGCCGTTA+GGG | + | chr3_1:56455360-56455379 | None:intergenic | 50.0% | |
| ACTCAACTGGTAAGGCCGTT+AGG | + | chr3_1:56455361-56455380 | None:intergenic | 50.0% | |
| TGGGATGCCATGAGTCTATG+CGG | - | chr3_1:56455384-56455403 | Msa0363820:intron | 50.0% | |
| CTTGAAGCTCACGCTGTCAA+AGG | - | chr3_1:56455553-56455572 | Msa0363820:CDS | 50.0% | |
| GACACATGCGAAATGGTCTC+CGG | - | chr3_1:56455585-56455604 | Msa0363820:intron | 50.0% | |
| CGATACCAAGCAGTAGCAAC+CGG | + | chr3_1:56455607-56455626 | None:intergenic | 50.0% | |
| ! | TTGGTATCGAATGCTTCCCG+AGG | - | chr3_1:56455618-56455637 | Msa0363820:intron | 50.0% |
| TATCGAATGCTTCCCGAGGT+AGG | - | chr3_1:56455622-56455641 | Msa0363820:intron | 50.0% | |
| ATCGAATGCTTCCCGAGGTA+GGG | - | chr3_1:56455623-56455642 | Msa0363820:intron | 50.0% | |
| GCGAGCATGCACTTTGTGTA+GGG | - | chr3_1:56456049-56456068 | Msa0363820:intron | 50.0% | |
| AAGGCGAAGAAGGAGGAGAA+GGG | - | chr3_1:56456093-56456112 | Msa0363820:intron | 50.0% | |
| GCAATAGGACTGGACTCCTC+TGG | + | chr3_1:56454113-56454132 | None:intergenic | 55.0% | |
| CTCCCTCCATGCAATAGGAC+TGG | + | chr3_1:56454123-56454142 | None:intergenic | 55.0% | |
| CAGTCCTATTGCATGGAGGG+AGG | - | chr3_1:56454121-56454140 | Msa0363820:intron | 55.0% | |
| GGGATGCCATGAGTCTATGC+GGG | - | chr3_1:56455385-56455404 | Msa0363820:intron | 55.0% | |
| GGATGCCATGAGTCTATGCG+GGG | - | chr3_1:56455386-56455405 | Msa0363820:intron | 55.0% | |
| GATGCCATGAGTCTATGCGG+GGG | - | chr3_1:56455387-56455406 | Msa0363820:intron | 55.0% | |
| TACACCCCCGCATAGACTCA+TGG | + | chr3_1:56455394-56455413 | None:intergenic | 55.0% | |
| ! | GCTCACGCTGTCAAAGGCAT+TGG | - | chr3_1:56455559-56455578 | Msa0363820:CDS | 55.0% |
| CGCGAGCATGCACTTTGTGT+AGG | - | chr3_1:56456048-56456067 | Msa0363820:intron | 55.0% | |
| GAAGCGGAAGAAGGCGAAGA+AGG | - | chr3_1:56456083-56456102 | Msa0363820:intron | 55.0% | |
| GAAGGCGAAGAAGGAGGAGA+AGG | - | chr3_1:56456092-56456111 | Msa0363820:intron | 55.0% | |
| AGGCGAAGAAGGAGGAGAAG+GGG | - | chr3_1:56456094-56456113 | Msa0363820:intron | 55.0% | |
| TGGTCGGGATCAGCAGCGAT+AGG | + | chr3_1:56454478-56454497 | None:intergenic | 60.0% | |
| GGTCTCCGGTTGCTACTGCT+TGG | - | chr3_1:56455599-56455618 | Msa0363820:intron | 60.0% | |
| GCGGAAGAAGGCGAAGAAGG+AGG | - | chr3_1:56456086-56456105 | Msa0363820:intron | 60.0% | |
| GAAGGGGGGGTTACCTGACC+AGG | + | chr3_1:56455046-56455065 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 56452160 | 56456843 | 56452160 | ID=Msa0363820;Name=Msa0363820 |
| chr3_1 | mRNA | 56452160 | 56456843 | 56452160 | ID=Msa0363820-mRNA-1;Parent=Msa0363820;Name=Msa0363820-mRNA-1;_AED=0.06;_eAED=0.06;_QI=69|1|1|1|0.88|0.8|10|243|399 |
| chr3_1 | exon | 56452160 | 56452506 | 56452160 | ID=Msa0363820-mRNA-1:exon:10423;Parent=Msa0363820-mRNA-1 |
| chr3_1 | exon | 56452836 | 56452982 | 56452836 | ID=Msa0363820-mRNA-1:exon:10422;Parent=Msa0363820-mRNA-1 |
| chr3_1 | exon | 56453173 | 56453266 | 56453173 | ID=Msa0363820-mRNA-1:exon:10421;Parent=Msa0363820-mRNA-1 |
| chr3_1 | exon | 56453364 | 56453459 | 56453364 | ID=Msa0363820-mRNA-1:exon:10420;Parent=Msa0363820-mRNA-1 |
| chr3_1 | exon | 56453952 | 56454136 | 56453952 | ID=Msa0363820-mRNA-1:exon:10419;Parent=Msa0363820-mRNA-1 |
| chr3_1 | exon | 56454241 | 56454327 | 56454241 | ID=Msa0363820-mRNA-1:exon:10418;Parent=Msa0363820-mRNA-1 |
| chr3_1 | exon | 56454492 | 56454618 | 56454492 | ID=Msa0363820-mRNA-1:exon:10417;Parent=Msa0363820-mRNA-1 |
| chr3_1 | exon | 56455408 | 56455593 | 56455408 | ID=Msa0363820-mRNA-1:exon:10416;Parent=Msa0363820-mRNA-1 |
| chr3_1 | exon | 56456578 | 56456768 | 56456578 | ID=Msa0363820-mRNA-1:exon:10415;Parent=Msa0363820-mRNA-1 |
| chr3_1 | exon | 56456792 | 56456843 | 56456792 | ID=Msa0363820-mRNA-1:exon:10414;Parent=Msa0363820-mRNA-1 |
| chr3_1 | five_prime_UTR | 56456792 | 56456843 | 56456792 | ID=Msa0363820-mRNA-1:five_prime_utr;Parent=Msa0363820-mRNA-1 |
| chr3_1 | five_prime_UTR | 56456752 | 56456768 | 56456752 | ID=Msa0363820-mRNA-1:five_prime_utr;Parent=Msa0363820-mRNA-1 |
| chr3_1 | CDS | 56456578 | 56456751 | 56456578 | ID=Msa0363820-mRNA-1:cds;Parent=Msa0363820-mRNA-1 |
| chr3_1 | CDS | 56455408 | 56455593 | 56455408 | ID=Msa0363820-mRNA-1:cds;Parent=Msa0363820-mRNA-1 |
| chr3_1 | CDS | 56454492 | 56454618 | 56454492 | ID=Msa0363820-mRNA-1:cds;Parent=Msa0363820-mRNA-1 |
| chr3_1 | CDS | 56454241 | 56454327 | 56454241 | ID=Msa0363820-mRNA-1:cds;Parent=Msa0363820-mRNA-1 |
| chr3_1 | CDS | 56453952 | 56454136 | 56453952 | ID=Msa0363820-mRNA-1:cds;Parent=Msa0363820-mRNA-1 |
| chr3_1 | CDS | 56453364 | 56453459 | 56453364 | ID=Msa0363820-mRNA-1:cds;Parent=Msa0363820-mRNA-1 |
| chr3_1 | CDS | 56453173 | 56453266 | 56453173 | ID=Msa0363820-mRNA-1:cds;Parent=Msa0363820-mRNA-1 |
| chr3_1 | CDS | 56452836 | 56452982 | 56452836 | ID=Msa0363820-mRNA-1:cds;Parent=Msa0363820-mRNA-1 |
| chr3_1 | CDS | 56452403 | 56452506 | 56452403 | ID=Msa0363820-mRNA-1:cds;Parent=Msa0363820-mRNA-1 |
| chr3_1 | three_prime_UTR | 56452160 | 56452402 | 56452160 | ID=Msa0363820-mRNA-1:three_prime_utr;Parent=Msa0363820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
