Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455730 | XP_003600393.1 | 97.494 | 399 | 10 | 0 | 1 | 399 | 1 | 399 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455730 | sp|P52432|RPAC1_MOUSE | 42.473 | 372 | 161 | 6 | 42 | 398 | 7 | 340 | 8.11e-88 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455730 | G7IXS2 | 97.494 | 399 | 10 | 0 | 1 | 399 | 1 | 399 | 0.0 | 801 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0411420 | Msa0455730 | 0.851909 | 6.527247e-61 | -8.615850e-47 |
| Msa0363820 | Msa0455730 | 0.824277 | 8.807143e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455730 | MtrunA17_Chr3g0102701 | 97.494 | 399 | 10 | 0 | 1 | 399 | 1 | 399 | 0.0 | 801 |
| Msa0455730 | MtrunA17_Chr4g0043761 | 31.861 | 317 | 175 | 9 | 87 | 394 | 11 | 295 | 4.04e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0455730 | AT1G60620.1 | 65.067 | 375 | 116 | 5 | 28 | 399 | 23 | 385 | 1.06e-173 | 490 |
| Msa0455730 | AT1G60850.2 | 60.916 | 371 | 128 | 6 | 28 | 394 | 15 | 372 | 7.45e-156 | 444 |
| Msa0455730 | AT1G60850.4 | 60.916 | 371 | 128 | 6 | 28 | 394 | 15 | 372 | 7.45e-156 | 444 |
| Msa0455730 | AT1G60850.1 | 60.916 | 371 | 128 | 6 | 28 | 394 | 15 | 372 | 7.45e-156 | 444 |
| Msa0455730 | AT1G60620.2 | 66.566 | 332 | 96 | 5 | 71 | 399 | 1 | 320 | 1.80e-155 | 441 |
| Msa0455730 | AT1G60850.3 | 63.498 | 263 | 89 | 5 | 28 | 286 | 15 | 274 | 4.25e-111 | 328 |
| Msa0455730 | AT2G15430.1 | 33.642 | 324 | 170 | 11 | 83 | 394 | 6 | 296 | 3.67e-40 | 145 |
| Msa0455730 | AT2G15400.1 | 33.333 | 324 | 171 | 10 | 83 | 394 | 6 | 296 | 3.20e-37 | 137 |
| Msa0455730 | AT2G15430.2 | 34.553 | 246 | 126 | 9 | 83 | 316 | 6 | 228 | 2.52e-32 | 122 |
| Msa0455730 | AT2G15430.3 | 34.553 | 246 | 126 | 9 | 83 | 316 | 6 | 228 | 3.63e-32 | 122 |
| Msa0455730 | AT2G15400.2 | 34.836 | 244 | 124 | 8 | 83 | 314 | 6 | 226 | 1.24e-29 | 115 |
Find 95 sgRNAs with CRISPR-Local
Find 285 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTAGGGTTTAGGGTTTA+TGG | 0.109871 | 3_3:-48764205 | None:intergenic |
| CGGAGGAGAGGGAGAATTTA+GGG | 0.146173 | 3_3:-48764219 | None:intergenic |
| ACGGAGGAGAGGGAGAATTT+AGG | 0.187159 | 3_3:-48764220 | None:intergenic |
| GAGGGAGAATTTAGGGTTTA+GGG | 0.195872 | 3_3:-48764212 | None:intergenic |
| TATGTTAAGCACCTAAAATT+TGG | 0.212100 | 3_3:-48768810 | None:intergenic |
| AGATCCAGCCCCTTGTAATT+TGG | 0.213911 | 3_3:+48767031 | Msa0455730:CDS |
| ATTACAAGGGGCTGGATCTT+TGG | 0.276108 | 3_3:-48767027 | None:intergenic |
| GCTGGATCTTTGGAGAATTT+AGG | 0.296518 | 3_3:-48767017 | None:intergenic |
| AGAGGGAGAATTTAGGGTTT+AGG | 0.304919 | 3_3:-48764213 | None:intergenic |
| TACTGAAGCTGTGAAGATTC+TGG | 0.327730 | 3_3:+48768574 | Msa0455730:CDS |
| TAGGAATGAGACCCAGTCTA+TGG | 0.328096 | 3_3:-48766490 | None:intergenic |
| TTCTAAGTTCATGATGTAAT+CGG | 0.329327 | 3_3:-48764359 | None:intergenic |
| CACTGAAGTGGTTGCCTAAC+GGG | 0.329435 | 3_3:+48766913 | Msa0455730:CDS |
| TCTGGTGCTTATGCAGCATT+AGG | 0.369089 | 3_3:+48765462 | Msa0455730:CDS |
| AAGGGTCAACCTCGTCTTAC+CGG | 0.370642 | 3_3:+48766775 | Msa0455730:CDS |
| TCTCTCTTTGTGGTTTGGTT+TGG | 0.375543 | 3_3:-48764253 | None:intergenic |
| GCTTCAGTAAACAGCACATC+AGG | 0.387361 | 3_3:-48768560 | None:intergenic |
| TAAAACCTGGATATTCAAAT+TGG | 0.389141 | 3_3:-48766529 | None:intergenic |
| ACAGATACCATACAATATTC+TGG | 0.390797 | 3_3:+48765444 | Msa0455730:CDS |
| AATTCTGTACATGATCAGTT+TGG | 0.392164 | 3_3:+48768675 | Msa0455730:three_prime_UTR |
| CGAAGTTCTTGCCCATAGAC+TGG | 0.394435 | 3_3:+48766478 | Msa0455730:CDS |
| TATGAAAGTTCACTCATTGT+TGG | 0.404231 | 3_3:+48768738 | Msa0455730:three_prime_UTR |
| CTAGTTACTATTGAATCAAC+TGG | 0.412801 | 3_3:+48768527 | Msa0455730:intron |
| CCCGACCAATTTGAATATCC+AGG | 0.417328 | 3_3:+48766524 | Msa0455730:CDS |
| AGCTAAACTTGGACCTGGTC+AGG | 0.418480 | 3_3:+48767064 | Msa0455730:CDS |
| CGAAAAGCATTGGCAACTGC+TGG | 0.428330 | 3_3:-48765588 | None:intergenic |
| CAACATGTTCGTTGTGAAAA+GGG | 0.429767 | 3_3:+48766757 | Msa0455730:CDS |
| GAAGCGGAAGAAGGCGAAGA+AGG | 0.431432 | 3_3:+48768117 | Msa0455730:CDS |
| ACAACATGTTCGTTGTGAAA+AGG | 0.437375 | 3_3:+48766756 | Msa0455730:CDS |
| TTGGTTTGGTAGCAGAAATA+CGG | 0.443710 | 3_3:-48764239 | None:intergenic |
| TAACTTCTATCAAAATTTCA+AGG | 0.446196 | 3_3:+48765509 | Msa0455730:CDS |
| ATGAAAGTTCACTCATTGTT+GGG | 0.447554 | 3_3:+48768739 | Msa0455730:three_prime_UTR |
| AGATGAGTGGGAAGCGTTGA+AGG | 0.453951 | 3_3:-48764388 | None:intergenic |
| CAAGAACAGAATGGAGGAAG+AGG | 0.471453 | 3_3:+48764331 | Msa0455730:CDS |
| TTGTCCTAAAATGAATGAAA+AGG | 0.482111 | 3_3:+48768649 | Msa0455730:three_prime_UTR |
| ACATCCAAATTACAAGGGGC+TGG | 0.484273 | 3_3:-48767035 | None:intergenic |
| GATATAGAAGATATTGGAAG+AGG | 0.486692 | 3_3:+48767843 | Msa0455730:CDS |
| TGTACTCACGAAAGATGTTA+AGG | 0.487182 | 3_3:+48767773 | Msa0455730:CDS |
| GACATGGAGTTTGACATGAT+TGG | 0.487643 | 3_3:+48765558 | Msa0455730:CDS |
| CGATACCAAGCAGTAGCAAC+CGG | 0.487717 | 3_3:-48767638 | None:intergenic |
| CCTGGATATTCAAATTGGTC+GGG | 0.488273 | 3_3:-48766524 | None:intergenic |
| ACCTGGATATTCAAATTGGT+CGG | 0.492745 | 3_3:-48766525 | None:intergenic |
| TTGGTAAGACACATGCGAAA+TGG | 0.496915 | 3_3:+48767612 | Msa0455730:CDS |
| GAGAATTCTTCGAAAAGCAT+TGG | 0.497782 | 3_3:-48765598 | None:intergenic |
| AGCGGAAGAAGGCGAAGAAG+GGG | 0.502241 | 3_3:+48768119 | Msa0455730:CDS |
| GATGTTATAGTAGCTAAACT+TGG | 0.502751 | 3_3:+48767053 | Msa0455730:CDS |
| AAGCGGAAGAAGGCGAAGAA+GGG | 0.510724 | 3_3:+48768118 | Msa0455730:CDS |
| TCTAAGTTCATGATGTAATC+GGG | 0.512453 | 3_3:-48764358 | None:intergenic |
| TGAATGCATTGAATGACATC+CGG | 0.513709 | 3_3:+48768855 | Msa0455730:three_prime_UTR |
| CTTGAAGCTCACGCTGTCAA+AGG | 0.522198 | 3_3:+48767587 | Msa0455730:CDS |
| GCGAGCATGCACTCTGTGTA+GGG | 0.524881 | 3_3:+48768083 | Msa0455730:CDS |
| AGAGAGAATGTCGTCGTCTG+AGG | 0.528081 | 3_3:+48764279 | Msa0455730:exon |
| GGTCTCCGGTTGCTACTGCT+TGG | 0.528704 | 3_3:+48767633 | Msa0455730:CDS |
| GAAAGATGTTAAGGATGAGT+TGG | 0.528798 | 3_3:+48767782 | Msa0455730:CDS |
| GACACATGCGAAATGGTCTC+CGG | 0.531525 | 3_3:+48767619 | Msa0455730:CDS |
| GCTATAAGCTCACTCCCGTT+AGG | 0.534224 | 3_3:-48766927 | None:intergenic |
| ACTCTTTCAATAGCCATGGT+TGG | 0.537705 | 3_3:-48766422 | None:intergenic |
| ATATACTCTTTCAATAGCCA+TGG | 0.546326 | 3_3:-48766426 | None:intergenic |
| TAGCAGAAATACGGAGGAGA+GGG | 0.550008 | 3_3:-48764230 | None:intergenic |
| ATAAGCACCAGAATATTGTA+TGG | 0.550616 | 3_3:-48765451 | None:intergenic |
| TGCATAAGAGAAGCGGAAGA+AGG | 0.551993 | 3_3:+48768108 | Msa0455730:CDS |
| AGTTGATAACAGTGTACGGT+TGG | 0.555301 | 3_3:+48765485 | Msa0455730:CDS |
| ACTATAACATCCAAATTACA+AGG | 0.560647 | 3_3:-48767041 | None:intergenic |
| CGCGAGCATGCACTCTGTGT+AGG | 0.560878 | 3_3:+48768082 | Msa0455730:CDS |
| ATTGATGAACAAGAACAGAA+TGG | 0.562671 | 3_3:+48764322 | Msa0455730:CDS |
| GCTCACGCTGTCAAAGGCAT+TGG | 0.566987 | 3_3:+48767593 | Msa0455730:CDS |
| AGGAATGAGACCCAGTCTAT+GGG | 0.569217 | 3_3:-48766489 | None:intergenic |
| TCGAAGAATTCTCATAGCAG+AGG | 0.583840 | 3_3:+48765608 | Msa0455730:CDS |
| GAAGTTCTTGCCCATAGACT+GGG | 0.586008 | 3_3:+48766479 | Msa0455730:CDS |
| AGATAGATAGTTACATGTTG+AGG | 0.587384 | 3_3:-48764451 | None:intergenic |
| CTTCAGTAAACAGCACATCA+GGG | 0.587393 | 3_3:-48768559 | None:intergenic |
| AAAGAAGAATCAAGAAAGCT+CGG | 0.588115 | 3_3:-48768621 | None:intergenic |
| TAGGAGTTGATAACAGTGTA+CGG | 0.591277 | 3_3:+48765481 | Msa0455730:CDS |
| TGGTCGGGATCAGCAGCGAT+AGG | 0.593736 | 3_3:-48766509 | None:intergenic |
| GTCGTCTGAGGATGAATCGA+TGG | 0.596600 | 3_3:+48764291 | Msa0455730:CDS |
| ACGCATCACGGATGAAGACA+TGG | 0.597126 | 3_3:+48765542 | Msa0455730:CDS |
| TGAGGATGAATCGATGGCAT+CGG | 0.599176 | 3_3:+48764297 | Msa0455730:CDS |
| ACACTGAAGTGGTTGCCTAA+CGG | 0.604989 | 3_3:+48766912 | Msa0455730:CDS |
| TTAAGCACCTAAAATTTGGA+CGG | 0.605733 | 3_3:-48768806 | None:intergenic |
| GCGGAAGAAGGCGAAGAAGG+GGG | 0.606959 | 3_3:+48768120 | Msa0455730:CDS |
| CTATAACATCCAAATTACAA+GGG | 0.623245 | 3_3:-48767040 | None:intergenic |
| TGAAATCAGATACACTGAAG+TGG | 0.623846 | 3_3:+48766901 | Msa0455730:CDS |
| GTAGCAGAAATACGGAGGAG+AGG | 0.626431 | 3_3:-48764231 | None:intergenic |
| TTCAGTAAACAGCACATCAG+GGG | 0.627383 | 3_3:-48768558 | None:intergenic |
| TATAACATCCAAATTACAAG+GGG | 0.629035 | 3_3:-48767039 | None:intergenic |
| GGGAGTGAGCTTATAGCTGA+AGG | 0.635380 | 3_3:+48766933 | Msa0455730:CDS |
| TAGGGAATGCATAAGAGAAG+CGG | 0.637709 | 3_3:+48768101 | Msa0455730:CDS |
| GATGAACAAGAACAGAATGG+AGG | 0.659810 | 3_3:+48764325 | Msa0455730:CDS |
| GTTTGGTAGCAGAAATACGG+AGG | 0.660304 | 3_3:-48764236 | None:intergenic |
| ATAGTAGCTAAACTTGGACC+TGG | 0.667892 | 3_3:+48767059 | Msa0455730:CDS |
| GGTTGAAGTGAAACGCATCA+CGG | 0.668140 | 3_3:+48765530 | Msa0455730:CDS |
| AGTCATTTACCGGTAAGACG+AGG | 0.670733 | 3_3:-48766784 | None:intergenic |
| TCAGTAAACAGCACATCAGG+GGG | 0.672614 | 3_3:-48768557 | None:intergenic |
| TTATAAATAGATGGTGCCGG+AGG | 0.682634 | 3_3:+48766700 | Msa0455730:intron |
| TTGGTATCGAATGCTTCCCG+AGG | 0.698025 | 3_3:+48767652 | Msa0455730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTGATTTTGAATATAT+CGG | + | chr3_3:48765676-48765695 | Msa0455730:intron | 10.0% |
| !!! | TTAATATTCATAATTTTTTG+TGG | + | chr3_3:48765889-48765908 | Msa0455730:intron | 10.0% |
| !! | TAAAATTATAAAAACGATAA+AGG | - | chr3_3:48766398-48766417 | None:intergenic | 10.0% |
| !!! | TTTATCGTTTTTATAATTTT+AGG | + | chr3_3:48766397-48766416 | Msa0455730:intron | 10.0% |
| !!! | ATAATTGATTTTATGAAAAA+AGG | + | chr3_3:48768830-48768849 | Msa0455730:three_prime_UTR | 10.0% |
| !! | GAATAAGAAAAATAATGAAA+AGG | - | chr3_3:48764492-48764511 | None:intergenic | 15.0% |
| !!! | ATTTAACATTATTCATGTTT+TGG | + | chr3_3:48765412-48765431 | Msa0455730:intron | 15.0% |
| !! | TGATTCATATAAGAATAAAA+AGG | + | chr3_3:48765789-48765808 | Msa0455730:intron | 15.0% |
| !! | GATTCATATAAGAATAAAAA+GGG | + | chr3_3:48765790-48765809 | Msa0455730:intron | 15.0% |
| !! | CATCTATTTATAAAAAAGAA+AGG | - | chr3_3:48766693-48766712 | None:intergenic | 15.0% |
| !!! | CTTTCTTTTTTATAAATAGA+TGG | + | chr3_3:48766691-48766710 | Msa0455730:intron | 15.0% |
| !! | AATACTGGTAAAAATATATT+AGG | - | chr3_3:48768389-48768408 | None:intergenic | 15.0% |
| !! | TTAGTTAATATACTTCTGTT+TGG | + | chr3_3:48764735-48764754 | Msa0455730:intron | 20.0% |
| !! | TATAGAAATAGCTTATACAT+AGG | - | chr3_3:48764812-48764831 | None:intergenic | 20.0% |
| !!! | TTGTTTGAATTTGCTTATTT+GGG | - | chr3_3:48765138-48765157 | None:intergenic | 20.0% |
| !!! | GTTTGATATTTTTGTTTGTT+CGG | + | chr3_3:48765380-48765399 | Msa0455730:intron | 20.0% |
| !! | TAACTTCTATCAAAATTTCA+AGG | + | chr3_3:48765509-48765528 | Msa0455730:CDS | 20.0% |
| !!! | TATATCGGTCAATTTTATTA+AGG | + | chr3_3:48765691-48765710 | Msa0455730:intron | 20.0% |
| !!! | TTATTTAGAACACTAACATT+AGG | + | chr3_3:48765825-48765844 | Msa0455730:intron | 20.0% |
| !!! | TTATGCAATTCTTTTGTTAT+AGG | + | chr3_3:48765953-48765972 | Msa0455730:intron | 20.0% |
| !! | ATAAACAAGAGAAATTAACT+TGG | - | chr3_3:48766001-48766020 | None:intergenic | 20.0% |
| !!! | AATTTTCTTCTTGTTAAAAG+TGG | - | chr3_3:48766079-48766098 | None:intergenic | 20.0% |
| !! | TTGTGTGATAAATAGAAAAT+TGG | + | chr3_3:48766604-48766623 | Msa0455730:intron | 20.0% |
| !!! | TTAAAAGTCGTAAATGTTTT+TGG | - | chr3_3:48766984-48767003 | None:intergenic | 20.0% |
| !!! | GTTTTTGATATAGAAGATAT+TGG | + | chr3_3:48767837-48767856 | Msa0455730:CDS | 20.0% |
| !! | AGATATAAAAATCTAACACT+AGG | - | chr3_3:48767893-48767912 | None:intergenic | 20.0% |
| !! | GGCATATTAAATTAAATTCA+TGG | + | chr3_3:48768215-48768234 | Msa0455730:intron | 20.0% |
| !! | CGTTAAAAAAAATACTTCAT+TGG | - | chr3_3:48768286-48768305 | None:intergenic | 20.0% |
| !! | TACATATCTTAAACTAATAC+TGG | - | chr3_3:48768404-48768423 | None:intergenic | 20.0% |
| !!! | TTTTCCTTTTCATTCATTTT+AGG | - | chr3_3:48768656-48768675 | None:intergenic | 20.0% |
| ! | TTCTAAGTTCATGATGTAAT+CGG | - | chr3_3:48764362-48764381 | None:intergenic | 25.0% |
| !!! | GTTAGAAACTTTTCTGAAAT+GGG | - | chr3_3:48764588-48764607 | None:intergenic | 25.0% |
| !!! | AGTTAGAAACTTTTCTGAAA+TGG | - | chr3_3:48764589-48764608 | None:intergenic | 25.0% |
| ! | AAAGTTTCTAACTTCATAAC+TGG | + | chr3_3:48764596-48764615 | Msa0455730:intron | 25.0% |
| ! | AAGTTTCTAACTTCATAACT+GGG | + | chr3_3:48764597-48764616 | Msa0455730:intron | 25.0% |
| !! | ACTTTGGAAGGATAAAAATT+AGG | + | chr3_3:48764621-48764640 | Msa0455730:intron | 25.0% |
| !! | ACTATGTTTTGTATCTTAGA+AGG | + | chr3_3:48764656-48764675 | Msa0455730:intron | 25.0% |
| ! | GAGAATAAAATGAAGTCAAA+CGG | + | chr3_3:48764835-48764854 | Msa0455730:intron | 25.0% |
| ! | AGCTTACAAAAATAGCTTAT+AGG | - | chr3_3:48764878-48764897 | None:intergenic | 25.0% |
| ! | AAGCTATACTATACAACTTA+TGG | + | chr3_3:48764893-48764912 | Msa0455730:intron | 25.0% |
| ! | ACTATACAACTTATGGATAT+AGG | + | chr3_3:48764900-48764919 | Msa0455730:intron | 25.0% |
| !! | GTTGTTTGAATTTGCTTATT+TGG | - | chr3_3:48765139-48765158 | None:intergenic | 25.0% |
| ! | ACAATTTGTGAAAAAACTTG+TGG | - | chr3_3:48765192-48765211 | None:intergenic | 25.0% |
| ! | ACCAGAAGATAAAATCAAAT+AGG | + | chr3_3:48765227-48765246 | Msa0455730:intron | 25.0% |
| ! | ATCATCACAGAAAACAAAAT+GGG | - | chr3_3:48765653-48765672 | None:intergenic | 25.0% |
| ! | AATCATCACAGAAAACAAAA+TGG | - | chr3_3:48765654-48765673 | None:intergenic | 25.0% |
| !! | TGTTCTAAATAATCAGTTGA+AGG | - | chr3_3:48765817-48765836 | None:intergenic | 25.0% |
| ! | TAATACCATGTTAGTATGTT+CGG | + | chr3_3:48765917-48765936 | Msa0455730:intron | 25.0% |
| ! | TTATAGGATGTATTGTTTCA+TGG | + | chr3_3:48765969-48765988 | Msa0455730:intron | 25.0% |
| !! | GTTTATCGACTATTATTTCA+TGG | + | chr3_3:48766015-48766034 | Msa0455730:intron | 25.0% |
| ! | TTAAATTTGTAATAAGCCAG+AGG | + | chr3_3:48766128-48766147 | Msa0455730:intron | 25.0% |
| ! | TAAAACCTGGATATTCAAAT+TGG | - | chr3_3:48766532-48766551 | None:intergenic | 25.0% |
| ! | GAAATAATATGCATGTTGTT+TGG | + | chr3_3:48766626-48766645 | Msa0455730:intron | 25.0% |
| !! | ATATTCAACCTTGTTATACA+AGG | - | chr3_3:48766660-48766679 | None:intergenic | 25.0% |
| !! | TTTTTATAAATAGATGGTGC+CGG | + | chr3_3:48766697-48766716 | Msa0455730:intron | 25.0% |
| ! | TATAACATCCAAATTACAAG+GGG | - | chr3_3:48767042-48767061 | None:intergenic | 25.0% |
| ! | CTATAACATCCAAATTACAA+GGG | - | chr3_3:48767043-48767062 | None:intergenic | 25.0% |
| ! | ACTATAACATCCAAATTACA+AGG | - | chr3_3:48767044-48767063 | None:intergenic | 25.0% |
| ! | TAGAAAATAAACAGAGAGAA+GGG | - | chr3_3:48767097-48767116 | None:intergenic | 25.0% |
| ! | ATAGAAAATAAACAGAGAGA+AGG | - | chr3_3:48767098-48767117 | None:intergenic | 25.0% |
| !!! | TTATGAAATTGGTTTGGTAT+AGG | + | chr3_3:48767285-48767304 | Msa0455730:intron | 25.0% |
| !! | CAATTTCCTATAAAAGTATG+TGG | - | chr3_3:48767565-48767584 | None:intergenic | 25.0% |
| ! | TCTATATCAAAAACTTTAGC+TGG | - | chr3_3:48767831-48767850 | None:intergenic | 25.0% |
| ! | TTTCATTTGTAAGTATTACG+TGG | + | chr3_3:48768194-48768213 | Msa0455730:intron | 25.0% |
| ! | ACTAAAATTCTTCTATGTTC+AGG | - | chr3_3:48768260-48768279 | None:intergenic | 25.0% |
| ! | AGATCAAGATGATAAATAAC+CGG | + | chr3_3:48768314-48768333 | Msa0455730:intron | 25.0% |
| ! | TTTGAATTTGTCAAAATCAC+CGG | - | chr3_3:48768336-48768355 | None:intergenic | 25.0% |
| ! | AACTAAAAATTGTGCGAATT+TGG | + | chr3_3:48768429-48768448 | Msa0455730:intron | 25.0% |
| ! | TTGTCCTAAAATGAATGAAA+AGG | + | chr3_3:48768649-48768668 | Msa0455730:three_prime_UTR | 25.0% |
| ! | TATGTTAAGCACCTAAAATT+TGG | - | chr3_3:48768813-48768832 | None:intergenic | 25.0% |
| ATTGATGAACAAGAACAGAA+TGG | + | chr3_3:48764322-48764341 | Msa0455730:CDS | 30.0% | |
| TCTAAGTTCATGATGTAATC+GGG | - | chr3_3:48764361-48764380 | None:intergenic | 30.0% | |
| !!! | TTTTGAAGTTCAAGATGAGT+GGG | - | chr3_3:48764403-48764422 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTTCAAGATGAG+TGG | - | chr3_3:48764404-48764423 | None:intergenic | 30.0% |
| AGATAGATAGTTACATGTTG+AGG | - | chr3_3:48764454-48764473 | None:intergenic | 30.0% | |
| TTGTGTTTGTAAGCTTACAA+TGG | + | chr3_3:48764686-48764705 | Msa0455730:intron | 30.0% | |
| GCATAAATACCTATCATGAT+AGG | + | chr3_3:48764942-48764961 | Msa0455730:intron | 30.0% | |
| !! | GCTATTTTCATAAGCTATCT+TGG | + | chr3_3:48765010-48765029 | Msa0455730:intron | 30.0% |
| !! | GCCTATTTGATTTTATCTTC+TGG | - | chr3_3:48765231-48765250 | None:intergenic | 30.0% |
| AATACAAATGCGGCTTAATT+GGG | + | chr3_3:48765252-48765271 | Msa0455730:intron | 30.0% | |
| CATGTACAAATTCGTTCTAT+TGG | + | chr3_3:48765342-48765361 | Msa0455730:intron | 30.0% | |
| TACAAATTCGTTCTATTGGT+GGG | + | chr3_3:48765346-48765365 | Msa0455730:intron | 30.0% | |
| ACAGATACCATACAATATTC+TGG | + | chr3_3:48765444-48765463 | Msa0455730:CDS | 30.0% | |
| ATAAGCACCAGAATATTGTA+TGG | - | chr3_3:48765454-48765473 | None:intergenic | 30.0% | |
| TCATCACAGAAAACAAAATG+GGG | - | chr3_3:48765652-48765671 | None:intergenic | 30.0% | |
| AATAAAAGGCAAAAGTTCAC+TGG | - | chr3_3:48765855-48765874 | None:intergenic | 30.0% | |
| ! | ACTTTTGCCTTTTATTGAGA+TGG | + | chr3_3:48765859-48765878 | Msa0455730:intron | 30.0% |
| ACTACTTCCATCTCAATAAA+AGG | - | chr3_3:48765869-48765888 | None:intergenic | 30.0% | |
| CAAGAAGAAAATTTGCAACA+AGG | + | chr3_3:48766086-48766105 | Msa0455730:intron | 30.0% | |
| AAAATCTGATTACCGCTATT+AGG | - | chr3_3:48766364-48766383 | None:intergenic | 30.0% | |
| !!! | ATAATTTTAGGTTCCAACCA+TGG | + | chr3_3:48766409-48766428 | Msa0455730:intron | 30.0% |
| ATATACTCTTTCAATAGCCA+TGG | - | chr3_3:48766429-48766448 | None:intergenic | 30.0% | |
| GTTAGTGTAGATATAAAACC+TGG | - | chr3_3:48766545-48766564 | None:intergenic | 30.0% | |
| ACAAGAAAGTCAGATAATCA+AGG | - | chr3_3:48766588-48766607 | None:intergenic | 30.0% | |
| ! | ATAATATGCATGTTGTTTGG+TGG | + | chr3_3:48766629-48766648 | Msa0455730:intron | 30.0% |
| ! | AAGAGTTTCAAGTCATTTAC+CGG | - | chr3_3:48766797-48766816 | None:intergenic | 30.0% |
| TATTGTAATATCACCAGACA+AGG | - | chr3_3:48766869-48766888 | None:intergenic | 30.0% | |
| !!! | GTCGTAAATGTTTTTGGTTT+TGG | - | chr3_3:48766978-48766997 | None:intergenic | 30.0% |
| GATGTTATAGTAGCTAAACT+TGG | + | chr3_3:48767053-48767072 | Msa0455730:CDS | 30.0% | |
| AGAAAATAAACAGAGAGAAG+GGG | - | chr3_3:48767096-48767115 | None:intergenic | 30.0% | |
| AATGTAGATCTAATGAACTC+AGG | + | chr3_3:48767141-48767160 | Msa0455730:intron | 30.0% | |
| !! | ATAGCAAACTTGCTAAGATA+GGG | - | chr3_3:48767186-48767205 | None:intergenic | 30.0% |
| !! | AATAGCAAACTTGCTAAGAT+AGG | - | chr3_3:48767187-48767206 | None:intergenic | 30.0% |
| !! | AAGTTTGCTATTAATCCAAC+AGG | + | chr3_3:48767195-48767214 | Msa0455730:intron | 30.0% |
| TGATTCAAATTCTGTTGAGT+TGG | + | chr3_3:48767231-48767250 | Msa0455730:intron | 30.0% | |
| GTTCTGGTATGTTATGAAAT+TGG | + | chr3_3:48767274-48767293 | Msa0455730:intron | 30.0% | |
| GGTATGTTATGAAATTGGTT+TGG | + | chr3_3:48767279-48767298 | Msa0455730:intron | 30.0% | |
| TTATGTTATGTACTCCCTAA+CGG | + | chr3_3:48767377-48767396 | Msa0455730:intron | 30.0% | |
| ! | TACAACTTCCAGTTTTCTAT+AGG | - | chr3_3:48767515-48767534 | None:intergenic | 30.0% |
| ! | TGCTAACCACATACTTTTAT+AGG | + | chr3_3:48767556-48767575 | Msa0455730:intron | 30.0% |
| !! | ATGCTTTGCTTTTATTCTCT+AGG | + | chr3_3:48767749-48767768 | Msa0455730:intron | 30.0% |
| GATATAGAAGATATTGGAAG+AGG | + | chr3_3:48767843-48767862 | Msa0455730:CDS | 30.0% | |
| !! | AAATTGTGCGAATTTGGTTT+TGG | + | chr3_3:48768435-48768454 | Msa0455730:intron | 30.0% |
| CAGTAATCCGTATAAAAACT+CGG | - | chr3_3:48768461-48768480 | None:intergenic | 30.0% | |
| CACACATGTAAGATATTTCA+GGG | - | chr3_3:48768492-48768511 | None:intergenic | 30.0% | |
| ACACACATGTAAGATATTTC+AGG | - | chr3_3:48768493-48768512 | None:intergenic | 30.0% | |
| CTAGTTACTATTGAATCAAC+TGG | + | chr3_3:48768527-48768546 | Msa0455730:intron | 30.0% | |
| AAAGAAGAATCAAGAAAGCT+CGG | - | chr3_3:48768624-48768643 | None:intergenic | 30.0% | |
| AATTCTGTACATGATCAGTT+TGG | + | chr3_3:48768675-48768694 | Msa0455730:three_prime_UTR | 30.0% | |
| TATGAAAGTTCACTCATTGT+TGG | + | chr3_3:48768738-48768757 | Msa0455730:three_prime_UTR | 30.0% | |
| ATGAAAGTTCACTCATTGTT+GGG | + | chr3_3:48768739-48768758 | Msa0455730:three_prime_UTR | 30.0% | |
| TTAAGCACCTAAAATTTGGA+CGG | - | chr3_3:48768809-48768828 | None:intergenic | 30.0% | |
| !! | TTGGTTTGGTAGCAGAAATA+CGG | - | chr3_3:48764242-48764261 | None:intergenic | 35.0% |
| AACTTCATAACTGGGTACTT+TGG | + | chr3_3:48764605-48764624 | Msa0455730:intron | 35.0% | |
| ACATAAGTGCCTATCATGAT+AGG | - | chr3_3:48764954-48764973 | None:intergenic | 35.0% | |
| GCAAATTCAAACAACCACAT+AGG | + | chr3_3:48765144-48765163 | Msa0455730:intron | 35.0% | |
| ! | GAAACTGTTTTCAACCTATG+TGG | - | chr3_3:48765161-48765180 | None:intergenic | 35.0% |
| CAAATAGGCCAATACAAATG+CGG | + | chr3_3:48765242-48765261 | Msa0455730:intron | 35.0% | |
| CAATTAAGCCGCATTTGTAT+TGG | - | chr3_3:48765253-48765272 | None:intergenic | 35.0% | |
| CAATACAAATGCGGCTTAAT+TGG | + | chr3_3:48765251-48765270 | Msa0455730:intron | 35.0% | |
| GTACAAATTCGTTCTATTGG+TGG | + | chr3_3:48765345-48765364 | Msa0455730:intron | 35.0% | |
| !! | TAGGAGTTGATAACAGTGTA+CGG | + | chr3_3:48765481-48765500 | Msa0455730:CDS | 35.0% |
| ! | GAGAATTCTTCGAAAAGCAT+TGG | - | chr3_3:48765601-48765620 | None:intergenic | 35.0% |
| ATCACAGAAAACAAAATGGG+GGG | - | chr3_3:48765650-48765669 | None:intergenic | 35.0% | |
| CATCACAGAAAACAAAATGG+GGG | - | chr3_3:48765651-48765670 | None:intergenic | 35.0% | |
| CATTTCCGAACATACTAACA+TGG | - | chr3_3:48765925-48765944 | None:intergenic | 35.0% | |
| CATGTTAGTATGTTCGGAAA+TGG | + | chr3_3:48765923-48765942 | Msa0455730:intron | 35.0% | |
| TGTAACATGTAATGCATAGC+AGG | - | chr3_3:48766211-48766230 | None:intergenic | 35.0% | |
| GTGTAGTTTAAGCCTAATAG+CGG | + | chr3_3:48766349-48766368 | Msa0455730:intron | 35.0% | |
| ACCTGGATATTCAAATTGGT+CGG | - | chr3_3:48766528-48766547 | None:intergenic | 35.0% | |
| ! | CTTTTCATTGTTTTCACCTC+CGG | - | chr3_3:48766719-48766738 | None:intergenic | 35.0% |
| ACAACATGTTCGTTGTGAAA+AGG | + | chr3_3:48766756-48766775 | Msa0455730:CDS | 35.0% | |
| CAACATGTTCGTTGTGAAAA+GGG | + | chr3_3:48766757-48766776 | Msa0455730:CDS | 35.0% | |
| TGAAATCAGATACACTGAAG+TGG | + | chr3_3:48766901-48766920 | Msa0455730:CDS | 35.0% | |
| AAAATAAACAGAGAGAAGGG+GGG | - | chr3_3:48767094-48767113 | None:intergenic | 35.0% | |
| GAAAATAAACAGAGAGAAGG+GGG | - | chr3_3:48767095-48767114 | None:intergenic | 35.0% | |
| TTCTATTAACACCCACACTA+AGG | + | chr3_3:48767112-48767131 | Msa0455730:intron | 35.0% | |
| ! | ACATTTGACTTCCTTAGTGT+GGG | - | chr3_3:48767126-48767145 | None:intergenic | 35.0% |
| ! | TACATTTGACTTCCTTAGTG+TGG | - | chr3_3:48767127-48767146 | None:intergenic | 35.0% |
| GAACTCAGGAACTATAAAAC+AGG | + | chr3_3:48767155-48767174 | Msa0455730:intron | 35.0% | |
| ! | CATTAAACTTGATAGCCTGT+TGG | - | chr3_3:48767213-48767232 | None:intergenic | 35.0% |
| !! | TGAAATTGGTTTGGTATAGG+TGG | + | chr3_3:48767288-48767307 | Msa0455730:intron | 35.0% |
| AAGTCAAAACACTCGTATCA+AGG | - | chr3_3:48767464-48767483 | None:intergenic | 35.0% | |
| ! | AACTTCCAGTTTTCTATAGG+AGG | - | chr3_3:48767512-48767531 | None:intergenic | 35.0% |
| ATATATGATGTTCCCTACCT+CGG | - | chr3_3:48767672-48767691 | None:intergenic | 35.0% | |
| AGCAAAGCATACAAATGTCA+GGG | - | chr3_3:48767739-48767758 | None:intergenic | 35.0% | |
| AAGCAAAGCATACAAATGTC+AGG | - | chr3_3:48767740-48767759 | None:intergenic | 35.0% | |
| TGTACTCACGAAAGATGTTA+AGG | + | chr3_3:48767773-48767792 | Msa0455730:CDS | 35.0% | |
| GAAAGATGTTAAGGATGAGT+TGG | + | chr3_3:48767782-48767801 | Msa0455730:CDS | 35.0% | |
| ACGATGACGCAAAATCAATT+TGG | - | chr3_3:48767951-48767970 | None:intergenic | 35.0% | |
| ATAAGAGAAAGCCAAAGAGA+TGG | - | chr3_3:48768006-48768025 | None:intergenic | 35.0% | |
| AGTGTCTTGATTGTTTGTCT+CGG | + | chr3_3:48768363-48768382 | Msa0455730:intron | 35.0% | |
| !! | GTTTTGGCCGAGTTTTTATA+CGG | + | chr3_3:48768451-48768470 | Msa0455730:intron | 35.0% |
| TGTAAGATATTTCAGGGACT+TGG | - | chr3_3:48768486-48768505 | None:intergenic | 35.0% | |
| ! | GTTTGTACCGTCCAAATTTT+AGG | + | chr3_3:48768799-48768818 | Msa0455730:three_prime_UTR | 35.0% |
| ! | GAGGGAGAATTTAGGGTTTA+GGG | - | chr3_3:48764215-48764234 | None:intergenic | 40.0% |
| ! | AGAGGGAGAATTTAGGGTTT+AGG | - | chr3_3:48764216-48764235 | None:intergenic | 40.0% |
| !! | TCTCTCTTTGTGGTTTGGTT+TGG | - | chr3_3:48764256-48764275 | None:intergenic | 40.0% |
| GATGAACAAGAACAGAATGG+AGG | + | chr3_3:48764325-48764344 | Msa0455730:CDS | 40.0% | |
| TCATAACTGGGTACTTTGGA+AGG | + | chr3_3:48764609-48764628 | Msa0455730:intron | 40.0% | |
| ATGCTATCAGCTGCAAAACA+GGG | - | chr3_3:48764926-48764945 | None:intergenic | 40.0% | |
| TATGCTATCAGCTGCAAAAC+AGG | - | chr3_3:48764927-48764946 | None:intergenic | 40.0% | |
| AACCAGATACAGAGAGAAGA+CGG | - | chr3_3:48765295-48765314 | None:intergenic | 40.0% | |
| ! | CTATTGGTGGGTATTGTTTC+TGG | + | chr3_3:48765358-48765377 | Msa0455730:intron | 40.0% |
| !! | AGTTGATAACAGTGTACGGT+TGG | + | chr3_3:48765485-48765504 | Msa0455730:CDS | 40.0% |
| GACATGGAGTTTGACATGAT+TGG | + | chr3_3:48765558-48765577 | Msa0455730:CDS | 40.0% | |
| TCGAAGAATTCTCATAGCAG+AGG | + | chr3_3:48765608-48765627 | Msa0455730:CDS | 40.0% | |
| TCACAGAAAACAAAATGGGG+GGG | - | chr3_3:48765649-48765668 | None:intergenic | 40.0% | |
| ACTCTTTCAATAGCCATGGT+TGG | - | chr3_3:48766425-48766444 | None:intergenic | 40.0% | |
| CCTGGATATTCAAATTGGTC+GGG | - | chr3_3:48766527-48766546 | None:intergenic | 40.0% | |
| TGGACACTCCTTGTATAACA+AGG | + | chr3_3:48766649-48766668 | Msa0455730:intron | 40.0% | |
| ! | TTATAAATAGATGGTGCCGG+AGG | + | chr3_3:48766700-48766719 | Msa0455730:intron | 40.0% |
| ! | GCTGGATCTTTGGAGAATTT+AGG | - | chr3_3:48767020-48767039 | None:intergenic | 40.0% |
| ATAGTAGCTAAACTTGGACC+TGG | + | chr3_3:48767059-48767078 | Msa0455730:CDS | 40.0% | |
| AAATAAACAGAGAGAAGGGG+GGG | - | chr3_3:48767093-48767112 | None:intergenic | 40.0% | |
| GTGATGCTATGTATGTGTTC+TGG | + | chr3_3:48767258-48767277 | Msa0455730:intron | 40.0% | |
| !! | ATTGGTTTGGTATAGGTGGA+CGG | + | chr3_3:48767292-48767311 | Msa0455730:intron | 40.0% |
| GCCTTACCAGTTGAGTTTAT+GGG | + | chr3_3:48767399-48767418 | Msa0455730:intron | 40.0% | |
| TCCCATAAACTCAACTGGTA+AGG | - | chr3_3:48767403-48767422 | None:intergenic | 40.0% | |
| CATGTCCTCCTATAGAAAAC+TGG | + | chr3_3:48767504-48767523 | Msa0455730:intron | 40.0% | |
| TTGGTAAGACACATGCGAAA+TGG | + | chr3_3:48767612-48767631 | Msa0455730:CDS | 40.0% | |
| TATATGATGTTCCCTACCTC+GGG | - | chr3_3:48767671-48767690 | None:intergenic | 40.0% | |
| ! | CTTTCTGTTCTGAACCATGA+TGG | + | chr3_3:48767911-48767930 | Msa0455730:intron | 40.0% |
| CCAATAATACCTCACCATCA+TGG | - | chr3_3:48767928-48767947 | None:intergenic | 40.0% | |
| ! | CCATGATGGTGAGGTATTAT+TGG | + | chr3_3:48767925-48767944 | Msa0455730:intron | 40.0% |
| ATCTCAAGCTTCCATCTCTT+TGG | + | chr3_3:48767992-48768011 | Msa0455730:intron | 40.0% | |
| GATTTGATTGTTGTGTGCAC+AGG | + | chr3_3:48768033-48768052 | Msa0455730:intron | 40.0% | |
| TGTGTGCACAGGTAGAAAAA+AGG | + | chr3_3:48768044-48768063 | Msa0455730:intron | 40.0% | |
| TAGGGAATGCATAAGAGAAG+CGG | + | chr3_3:48768101-48768120 | Msa0455730:CDS | 40.0% | |
| TTCAGTAAACAGCACATCAG+GGG | - | chr3_3:48768561-48768580 | None:intergenic | 40.0% | |
| CTTCAGTAAACAGCACATCA+GGG | - | chr3_3:48768562-48768581 | None:intergenic | 40.0% | |
| TACTGAAGCTGTGAAGATTC+TGG | + | chr3_3:48768574-48768593 | Msa0455730:CDS | 40.0% | |
| TAGCAGAAATACGGAGGAGA+GGG | - | chr3_3:48764233-48764252 | None:intergenic | 45.0% | |
| ! | GTTTGGTAGCAGAAATACGG+AGG | - | chr3_3:48764239-48764258 | None:intergenic | 45.0% |
| CTCTCTCTCTCTTTGTGGTT+TGG | - | chr3_3:48764261-48764280 | None:intergenic | 45.0% | |
| TCTCTCTCTCTCTCTCTTTG+TGG | - | chr3_3:48764266-48764285 | None:intergenic | 45.0% | |
| TGAGGATGAATCGATGGCAT+CGG | + | chr3_3:48764297-48764316 | Msa0455730:CDS | 45.0% | |
| CAAGAACAGAATGGAGGAAG+AGG | + | chr3_3:48764331-48764350 | Msa0455730:CDS | 45.0% | |
| TAGCATAAGCACCTGTGAGA+CGG | - | chr3_3:48765106-48765125 | None:intergenic | 45.0% | |
| CAGAGAGAAGACGGGAATAA+AGG | - | chr3_3:48765286-48765305 | None:intergenic | 45.0% | |
| ACCAGATACAGAGAGAAGAC+GGG | - | chr3_3:48765294-48765313 | None:intergenic | 45.0% | |
| TCTGGTGCTTATGCAGCATT+AGG | + | chr3_3:48765462-48765481 | Msa0455730:CDS | 45.0% | |
| GGTTGAAGTGAAACGCATCA+CGG | + | chr3_3:48765530-48765549 | Msa0455730:CDS | 45.0% | |
| GAAGTTCTTGCCCATAGACT+GGG | + | chr3_3:48766479-48766498 | Msa0455730:CDS | 45.0% | |
| AGGAATGAGACCCAGTCTAT+GGG | - | chr3_3:48766492-48766511 | None:intergenic | 45.0% | |
| TAGGAATGAGACCCAGTCTA+TGG | - | chr3_3:48766493-48766512 | None:intergenic | 45.0% | |
| CCCGACCAATTTGAATATCC+AGG | + | chr3_3:48766524-48766543 | Msa0455730:CDS | 45.0% | |
| AGTCATTTACCGGTAAGACG+AGG | - | chr3_3:48766787-48766806 | None:intergenic | 45.0% | |
| CAGCTATTTGACTCCTTGTC+TGG | + | chr3_3:48766853-48766872 | Msa0455730:intron | 45.0% | |
| ACACTGAAGTGGTTGCCTAA+CGG | + | chr3_3:48766912-48766931 | Msa0455730:CDS | 45.0% | |
| ! | TTTTGGATCAGCAGCTGACT+TGG | - | chr3_3:48766961-48766980 | None:intergenic | 45.0% |
| ATTACAAGGGGCTGGATCTT+TGG | - | chr3_3:48767030-48767049 | None:intergenic | 45.0% | |
| AGATCCAGCCCCTTGTAATT+TGG | + | chr3_3:48767031-48767050 | Msa0455730:CDS | 45.0% | |
| ACATCCAAATTACAAGGGGC+TGG | - | chr3_3:48767038-48767057 | None:intergenic | 45.0% | |
| GGCCTTACCAGTTGAGTTTA+TGG | + | chr3_3:48767398-48767417 | Msa0455730:intron | 45.0% | |
| TGGCATCCCATAAACTCAAC+TGG | - | chr3_3:48767408-48767427 | None:intergenic | 45.0% | |
| ! | TGTTCTGAACCATGATGGTG+AGG | + | chr3_3:48767916-48767935 | Msa0455730:intron | 45.0% |
| CACAGGTAGAAAAAAGGCTG+TGG | + | chr3_3:48768050-48768069 | Msa0455730:intron | 45.0% | |
| TGCATAAGAGAAGCGGAAGA+AGG | + | chr3_3:48768108-48768127 | Msa0455730:CDS | 45.0% | |
| TCAGTAAACAGCACATCAGG+GGG | - | chr3_3:48768560-48768579 | None:intergenic | 45.0% | |
| GCTTCAGTAAACAGCACATC+AGG | - | chr3_3:48768563-48768582 | None:intergenic | 45.0% | |
| CGGAGGAGAGGGAGAATTTA+GGG | - | chr3_3:48764222-48764241 | None:intergenic | 50.0% | |
| ACGGAGGAGAGGGAGAATTT+AGG | - | chr3_3:48764223-48764242 | None:intergenic | 50.0% | |
| GTAGCAGAAATACGGAGGAG+AGG | - | chr3_3:48764234-48764253 | None:intergenic | 50.0% | |
| AGAGAGAATGTCGTCGTCTG+AGG | + | chr3_3:48764279-48764298 | Msa0455730:exon | 50.0% | |
| GTCGTCTGAGGATGAATCGA+TGG | + | chr3_3:48764291-48764310 | Msa0455730:CDS | 50.0% | |
| !! | AGATGAGTGGGAAGCGTTGA+AGG | - | chr3_3:48764391-48764410 | None:intergenic | 50.0% |
| ! | GTTTTCCCAAACCGTCTCAC+AGG | + | chr3_3:48765092-48765111 | Msa0455730:intron | 50.0% |
| AAGCACCTGTGAGACGGTTT+GGG | - | chr3_3:48765100-48765119 | None:intergenic | 50.0% | |
| TAAGCACCTGTGAGACGGTT+TGG | - | chr3_3:48765101-48765120 | None:intergenic | 50.0% | |
| TCCCGTCTTCTCTCTGTATC+TGG | + | chr3_3:48765290-48765309 | Msa0455730:intron | 50.0% | |
| ACGCATCACGGATGAAGACA+TGG | + | chr3_3:48765542-48765561 | Msa0455730:CDS | 50.0% | |
| !! | CGAAAAGCATTGGCAACTGC+TGG | - | chr3_3:48765591-48765610 | None:intergenic | 50.0% |
| CAGAAAACAAAATGGGGGGG+TGG | - | chr3_3:48765646-48765665 | None:intergenic | 50.0% | |
| AGGAGTCCAGTCCTATTGCA+TGG | + | chr3_3:48766148-48766167 | Msa0455730:intron | 50.0% | |
| AGTCCAGTCCTATTGCATGG+AGG | + | chr3_3:48766151-48766170 | Msa0455730:intron | 50.0% | |
| GTCCAGTCCTATTGCATGGA+GGG | + | chr3_3:48766152-48766171 | Msa0455730:intron | 50.0% | |
| AGTCCTATTGCATGGAGGGA+GGG | + | chr3_3:48766156-48766175 | Msa0455730:intron | 50.0% | |
| TATCCCTCCCTCCATGCAAT+AGG | - | chr3_3:48766162-48766181 | None:intergenic | 50.0% | |
| CGAAGTTCTTGCCCATAGAC+TGG | + | chr3_3:48766478-48766497 | Msa0455730:CDS | 50.0% | |
| AAGGGTCAACCTCGTCTTAC+CGG | + | chr3_3:48766775-48766794 | Msa0455730:CDS | 50.0% | |
| CACTGAAGTGGTTGCCTAAC+GGG | + | chr3_3:48766913-48766932 | Msa0455730:CDS | 50.0% | |
| GCTATAAGCTCACTCCCGTT+AGG | - | chr3_3:48766930-48766949 | None:intergenic | 50.0% | |
| GGGAGTGAGCTTATAGCTGA+AGG | + | chr3_3:48766933-48766952 | Msa0455730:CDS | 50.0% | |
| AGCTAAACTTGGACCTGGTC+AGG | + | chr3_3:48767064-48767083 | Msa0455730:CDS | 50.0% | |
| CTCAACTGGTAAGGCCGTTA+GGG | - | chr3_3:48767394-48767413 | None:intergenic | 50.0% | |
| ACTCAACTGGTAAGGCCGTT+AGG | - | chr3_3:48767395-48767414 | None:intergenic | 50.0% | |
| TGGGATGCCATGAGTCTATG+CGG | + | chr3_3:48767418-48767437 | Msa0455730:intron | 50.0% | |
| CTTGAAGCTCACGCTGTCAA+AGG | + | chr3_3:48767587-48767606 | Msa0455730:CDS | 50.0% | |
| GACACATGCGAAATGGTCTC+CGG | + | chr3_3:48767619-48767638 | Msa0455730:CDS | 50.0% | |
| CGATACCAAGCAGTAGCAAC+CGG | - | chr3_3:48767641-48767660 | None:intergenic | 50.0% | |
| ! | TTGGTATCGAATGCTTCCCG+AGG | + | chr3_3:48767652-48767671 | Msa0455730:CDS | 50.0% |
| TATCGAATGCTTCCCGAGGT+AGG | + | chr3_3:48767656-48767675 | Msa0455730:intron | 50.0% | |
| ATCGAATGCTTCCCGAGGTA+GGG | + | chr3_3:48767657-48767676 | Msa0455730:intron | 50.0% | |
| AAGCGGAAGAAGGCGAAGAA+GGG | + | chr3_3:48768118-48768137 | Msa0455730:CDS | 50.0% | |
| AAGGGGGAGAAGGGGAAAAA+TGG | + | chr3_3:48768136-48768155 | Msa0455730:CDS | 50.0% | |
| GCAATAGGACTGGACTCCTC+TGG | - | chr3_3:48766147-48766166 | None:intergenic | 55.0% | |
| CTCCCTCCATGCAATAGGAC+TGG | - | chr3_3:48766157-48766176 | None:intergenic | 55.0% | |
| CAGTCCTATTGCATGGAGGG+AGG | + | chr3_3:48766155-48766174 | Msa0455730:intron | 55.0% | |
| GGGATGCCATGAGTCTATGC+GGG | + | chr3_3:48767419-48767438 | Msa0455730:intron | 55.0% | |
| GGATGCCATGAGTCTATGCG+GGG | + | chr3_3:48767420-48767439 | Msa0455730:intron | 55.0% | |
| GATGCCATGAGTCTATGCGG+GGG | + | chr3_3:48767421-48767440 | Msa0455730:intron | 55.0% | |
| TACACCCCCGCATAGACTCA+TGG | - | chr3_3:48767428-48767447 | None:intergenic | 55.0% | |
| ! | GCTCACGCTGTCAAAGGCAT+TGG | + | chr3_3:48767593-48767612 | Msa0455730:CDS | 55.0% |
| GCGAGCATGCACTCTGTGTA+GGG | + | chr3_3:48768083-48768102 | Msa0455730:CDS | 55.0% | |
| GAAGCGGAAGAAGGCGAAGA+AGG | + | chr3_3:48768117-48768136 | Msa0455730:CDS | 55.0% | |
| AGCGGAAGAAGGCGAAGAAG+GGG | + | chr3_3:48768119-48768138 | Msa0455730:CDS | 55.0% | |
| AAGGCGAAGAAGGGGGAGAA+GGG | + | chr3_3:48768127-48768146 | Msa0455730:CDS | 55.0% | |
| TGGTCGGGATCAGCAGCGAT+AGG | - | chr3_3:48766512-48766531 | None:intergenic | 60.0% | |
| GGTCTCCGGTTGCTACTGCT+TGG | + | chr3_3:48767633-48767652 | Msa0455730:CDS | 60.0% | |
| CGCGAGCATGCACTCTGTGT+AGG | + | chr3_3:48768082-48768101 | Msa0455730:CDS | 60.0% | |
| GCGGAAGAAGGCGAAGAAGG+GGG | + | chr3_3:48768120-48768139 | Msa0455730:CDS | 60.0% | |
| GAAGGCGAAGAAGGGGGAGA+AGG | + | chr3_3:48768126-48768145 | Msa0455730:CDS | 60.0% | |
| AGGCGAAGAAGGGGGAGAAG+GGG | + | chr3_3:48768128-48768147 | Msa0455730:CDS | 60.0% | |
| GAAGGGGGGGTTACCTGACC+AGG | - | chr3_3:48767080-48767099 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 48764206 | 48768877 | 48764206 | ID=Msa0455730;Name=Msa0455730 |
| chr3_3 | mRNA | 48764206 | 48768877 | 48764206 | ID=Msa0455730-mRNA-1;Parent=Msa0455730;Name=Msa0455730-mRNA-1;_AED=0.06;_eAED=0.06;_QI=80|1|1|1|1|1|9|243|399 |
| chr3_3 | exon | 48764206 | 48764459 | 48764206 | ID=Msa0455730-mRNA-1:exon:9106;Parent=Msa0455730-mRNA-1 |
| chr3_3 | exon | 48765444 | 48765629 | 48765444 | ID=Msa0455730-mRNA-1:exon:9107;Parent=Msa0455730-mRNA-1 |
| chr3_3 | exon | 48766419 | 48766545 | 48766419 | ID=Msa0455730-mRNA-1:exon:9108;Parent=Msa0455730-mRNA-1 |
| chr3_3 | exon | 48766710 | 48766796 | 48766710 | ID=Msa0455730-mRNA-1:exon:9109;Parent=Msa0455730-mRNA-1 |
| chr3_3 | exon | 48766901 | 48767085 | 48766901 | ID=Msa0455730-mRNA-1:exon:9110;Parent=Msa0455730-mRNA-1 |
| chr3_3 | exon | 48767578 | 48767673 | 48767578 | ID=Msa0455730-mRNA-1:exon:9111;Parent=Msa0455730-mRNA-1 |
| chr3_3 | exon | 48767771 | 48767864 | 48767771 | ID=Msa0455730-mRNA-1:exon:9112;Parent=Msa0455730-mRNA-1 |
| chr3_3 | exon | 48768055 | 48768201 | 48768055 | ID=Msa0455730-mRNA-1:exon:9113;Parent=Msa0455730-mRNA-1 |
| chr3_3 | exon | 48768531 | 48768877 | 48768531 | ID=Msa0455730-mRNA-1:exon:9114;Parent=Msa0455730-mRNA-1 |
| chr3_3 | five_prime_UTR | 48764206 | 48764285 | 48764206 | ID=Msa0455730-mRNA-1:five_prime_utr;Parent=Msa0455730-mRNA-1 |
| chr3_3 | CDS | 48764286 | 48764459 | 48764286 | ID=Msa0455730-mRNA-1:cds;Parent=Msa0455730-mRNA-1 |
| chr3_3 | CDS | 48765444 | 48765629 | 48765444 | ID=Msa0455730-mRNA-1:cds;Parent=Msa0455730-mRNA-1 |
| chr3_3 | CDS | 48766419 | 48766545 | 48766419 | ID=Msa0455730-mRNA-1:cds;Parent=Msa0455730-mRNA-1 |
| chr3_3 | CDS | 48766710 | 48766796 | 48766710 | ID=Msa0455730-mRNA-1:cds;Parent=Msa0455730-mRNA-1 |
| chr3_3 | CDS | 48766901 | 48767085 | 48766901 | ID=Msa0455730-mRNA-1:cds;Parent=Msa0455730-mRNA-1 |
| chr3_3 | CDS | 48767578 | 48767673 | 48767578 | ID=Msa0455730-mRNA-1:cds;Parent=Msa0455730-mRNA-1 |
| chr3_3 | CDS | 48767771 | 48767864 | 48767771 | ID=Msa0455730-mRNA-1:cds;Parent=Msa0455730-mRNA-1 |
| chr3_3 | CDS | 48768055 | 48768201 | 48768055 | ID=Msa0455730-mRNA-1:cds;Parent=Msa0455730-mRNA-1 |
| chr3_3 | CDS | 48768531 | 48768634 | 48768531 | ID=Msa0455730-mRNA-1:cds;Parent=Msa0455730-mRNA-1 |
| chr3_3 | three_prime_UTR | 48768635 | 48768877 | 48768635 | ID=Msa0455730-mRNA-1:three_prime_utr;Parent=Msa0455730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
