Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411420 | XP_003600393.1 | 96.992 | 399 | 12 | 0 | 1 | 399 | 1 | 399 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411420 | sp|P52432|RPAC1_MOUSE | 42.473 | 372 | 161 | 6 | 42 | 398 | 7 | 340 | 1.04e-87 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411420 | G7IXS2 | 96.992 | 399 | 12 | 0 | 1 | 399 | 1 | 399 | 0.0 | 798 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0164770 | Msa0411420 | 0.809482 | 1.851701e-50 | -8.615850e-47 |
| Msa0375310 | Msa0411420 | 0.818216 | 2.201087e-52 | -8.615850e-47 |
| Msa0411420 | Msa0421500 | 0.823952 | 1.049908e-53 | -8.615850e-47 |
| Msa0411420 | Msa0428060 | 0.804610 | 1.988553e-49 | -8.615850e-47 |
| Msa0411420 | Msa0455730 | 0.851909 | 6.527247e-61 | -8.615850e-47 |
| Msa0411420 | Msa0556250 | 0.803496 | 3.390176e-49 | -8.615850e-47 |
| Msa0411420 | Msa0704980 | 0.809518 | 1.818970e-50 | -8.615850e-47 |
| Msa0411420 | Msa0713070 | 0.803970 | 2.703105e-49 | -8.615850e-47 |
| Msa0411420 | Msa1384880 | 0.808085 | 3.683610e-50 | -8.615850e-47 |
| Msa0363820 | Msa0411420 | 0.859852 | 3.105509e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411420 | MtrunA17_Chr3g0102701 | 96.992 | 399 | 12 | 0 | 1 | 399 | 1 | 399 | 0.0 | 798 |
| Msa0411420 | MtrunA17_Chr4g0043761 | 31.861 | 317 | 175 | 9 | 87 | 394 | 11 | 295 | 3.84e-37 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0411420 | AT1G60620.1 | 65.067 | 375 | 116 | 5 | 28 | 399 | 23 | 385 | 1.13e-173 | 490 |
| Msa0411420 | AT1G60850.2 | 60.916 | 371 | 128 | 6 | 28 | 394 | 15 | 372 | 4.76e-156 | 445 |
| Msa0411420 | AT1G60850.4 | 60.916 | 371 | 128 | 6 | 28 | 394 | 15 | 372 | 4.76e-156 | 445 |
| Msa0411420 | AT1G60850.1 | 60.916 | 371 | 128 | 6 | 28 | 394 | 15 | 372 | 4.76e-156 | 445 |
| Msa0411420 | AT1G60620.2 | 66.566 | 332 | 96 | 5 | 71 | 399 | 1 | 320 | 1.58e-155 | 441 |
| Msa0411420 | AT1G60850.3 | 63.498 | 263 | 89 | 5 | 28 | 286 | 15 | 274 | 3.94e-111 | 328 |
| Msa0411420 | AT2G15430.1 | 33.642 | 324 | 170 | 11 | 83 | 394 | 6 | 296 | 4.34e-40 | 145 |
| Msa0411420 | AT2G15400.1 | 33.333 | 324 | 171 | 10 | 83 | 394 | 6 | 296 | 3.26e-37 | 137 |
| Msa0411420 | AT2G15430.2 | 34.553 | 246 | 126 | 9 | 83 | 316 | 6 | 228 | 2.68e-32 | 122 |
| Msa0411420 | AT2G15430.3 | 34.553 | 246 | 126 | 9 | 83 | 316 | 6 | 228 | 3.87e-32 | 122 |
| Msa0411420 | AT2G15400.2 | 34.836 | 244 | 124 | 8 | 83 | 314 | 6 | 226 | 1.35e-29 | 115 |
Find 92 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAGAGAGTTTAGGGTTTA+GGG | 0.139509 | 3_2:+53678235 | None:intergenic |
| AGAGAGAGAGTTTAGGGTTT+AGG | 0.157565 | 3_2:+53678234 | None:intergenic |
| AGATCCAGCCCCTTGTAATT+TGG | 0.213911 | 3_2:-53675425 | Msa0411420:CDS |
| GTTTGTACCGTCCAAATCTT+AGG | 0.214896 | 3_2:-53673670 | Msa0411420:three_prime_UTR |
| ATTACAAGGGGCTGGATCTT+TGG | 0.276108 | 3_2:+53675429 | None:intergenic |
| GCTGGATCTTTGGAGAATTT+AGG | 0.296518 | 3_2:+53675439 | None:intergenic |
| TATGTTAAGCCCCTAAGATT+TGG | 0.308432 | 3_2:+53673659 | None:intergenic |
| CATTCTCTCTCTTCGTTGTT+TGG | 0.322503 | 3_2:+53678190 | None:intergenic |
| GTTGTTTGGTAGCAGAAATA+TGG | 0.324071 | 3_2:+53678204 | None:intergenic |
| TACTGAAGCTGTGAAGATTC+TGG | 0.327730 | 3_2:-53673895 | Msa0411420:CDS |
| TAGGAATGAGACCCAGTCTA+TGG | 0.328096 | 3_2:+53675966 | None:intergenic |
| TTCTAAGTTCATGATGTAAT+CGG | 0.329327 | 3_2:+53678097 | None:intergenic |
| CACTGAAGTGGTTGCCTAAC+GGG | 0.329435 | 3_2:-53675543 | Msa0411420:CDS |
| TCTGGTGCTTATGCAGCATT+AGG | 0.369089 | 3_2:-53676994 | Msa0411420:CDS |
| AAGGGTCAACCTCGTCTTAC+CGG | 0.370642 | 3_2:-53675681 | Msa0411420:intron |
| GCTTCAGTAAACAGCACATC+AGG | 0.387361 | 3_2:+53673909 | None:intergenic |
| TAAAACCTGGATATTCAAAT+TGG | 0.389141 | 3_2:+53675927 | None:intergenic |
| ACAGATACCATACAATATTC+TGG | 0.390797 | 3_2:-53677012 | Msa0411420:CDS |
| AATTCTGTACATGATCAGTT+TGG | 0.392164 | 3_2:-53673794 | Msa0411420:three_prime_UTR |
| CGAAGTTCTTGCCCATAGAC+TGG | 0.394435 | 3_2:-53675978 | Msa0411420:CDS |
| CTAGTTACTATTGAATCAAC+TGG | 0.412801 | 3_2:-53673942 | Msa0411420:intron |
| CCCGACCAATTTGAATATCC+AGG | 0.417328 | 3_2:-53675932 | Msa0411420:intron |
| AGCTAAACTTGGACCTGGTC+AGG | 0.418480 | 3_2:-53675392 | Msa0411420:intron |
| TTTGTACCGTCCAAATCTTA+GGG | 0.422528 | 3_2:-53673669 | Msa0411420:three_prime_UTR |
| CGAAAAGCATTGGCAACTGC+TGG | 0.428330 | 3_2:+53676868 | None:intergenic |
| CAACATGTTCGTTGTGAAAA+GGG | 0.429767 | 3_2:-53675699 | Msa0411420:CDS |
| GAAGCGGAAGAAGGCGAAGA+AGG | 0.431432 | 3_2:-53674352 | Msa0411420:CDS |
| ACAACATGTTCGTTGTGAAA+AGG | 0.437375 | 3_2:-53675700 | Msa0411420:CDS |
| TAACTTCTATCAAAATTTCA+AGG | 0.446196 | 3_2:-53676947 | Msa0411420:CDS |
| AGATGAGTGGGAAGCGTTGA+AGG | 0.453951 | 3_2:+53678068 | None:intergenic |
| TTGTCCTAAAATGAATGAAA+AGG | 0.482111 | 3_2:-53673820 | Msa0411420:three_prime_UTR |
| ATGAAAGTTCACTCACTGTT+GGG | 0.483884 | 3_2:-53673730 | Msa0411420:three_prime_UTR |
| ACATCCAAATTACAAGGGGC+TGG | 0.484273 | 3_2:+53675421 | None:intergenic |
| GATATAGAAGATATTGGAAG+AGG | 0.486692 | 3_2:-53674626 | Msa0411420:intron |
| TGTACTCACGAAAGATGTTA+AGG | 0.487182 | 3_2:-53674696 | Msa0411420:CDS |
| GACATGGAGTTTGACATGAT+TGG | 0.487643 | 3_2:-53676898 | Msa0411420:CDS |
| CGATACCAAGCAGTAGCAAC+CGG | 0.487717 | 3_2:+53674818 | None:intergenic |
| CCTGGATATTCAAATTGGTC+GGG | 0.488273 | 3_2:+53675932 | None:intergenic |
| ACCTGGATATTCAAATTGGT+CGG | 0.492745 | 3_2:+53675931 | None:intergenic |
| TTGGTAAGACACATGCGAAA+TGG | 0.496915 | 3_2:-53674844 | Msa0411420:CDS |
| GAGAATTCTTCGAAAAGCAT+TGG | 0.497782 | 3_2:+53676858 | None:intergenic |
| CAAGAACAGAATGGAGGAAG+AGG | 0.498384 | 3_2:-53678125 | Msa0411420:CDS |
| AGCGGAAGAAGGCGAAGAAG+GGG | 0.502241 | 3_2:-53674350 | Msa0411420:CDS |
| GATGTTATAGTAGCTAAACT+TGG | 0.502751 | 3_2:-53675403 | Msa0411420:CDS |
| TATGAAAGTTCACTCACTGT+TGG | 0.507098 | 3_2:-53673731 | Msa0411420:three_prime_UTR |
| AAGCGGAAGAAGGCGAAGAA+GGG | 0.510724 | 3_2:-53674351 | Msa0411420:CDS |
| TCTAAGTTCATGATGTAATC+GGG | 0.512453 | 3_2:+53678098 | None:intergenic |
| GCGAGCATGCACTCTGTGTA+GGG | 0.524881 | 3_2:-53674386 | Msa0411420:CDS |
| GGTCTCCGGTTGCTACTGCT+TGG | 0.528704 | 3_2:-53674823 | Msa0411420:CDS |
| GAAAGATGTTAAGGATGAGT+TGG | 0.528798 | 3_2:-53674687 | Msa0411420:CDS |
| CTTGAAGCTCACGCTGTCAA+AGG | 0.530488 | 3_2:-53674869 | Msa0411420:CDS |
| GACACATGCGAAATGGTCTC+CGG | 0.531525 | 3_2:-53674837 | Msa0411420:CDS |
| GCTATAAGCTCACTCCCGTT+AGG | 0.534224 | 3_2:+53675529 | None:intergenic |
| ACTCTTTCAATAGCCATGGT+TGG | 0.537705 | 3_2:+53676034 | None:intergenic |
| ATATACTCTTTCAATAGCCA+TGG | 0.546326 | 3_2:+53676030 | None:intergenic |
| ATAAGCACCAGAATATTGTA+TGG | 0.550616 | 3_2:+53677005 | None:intergenic |
| TGCATAAGAGAAGCGGAAGA+AGG | 0.551993 | 3_2:-53674361 | Msa0411420:CDS |
| AGTTGATAACAGTGTACGGT+TGG | 0.555301 | 3_2:-53676971 | Msa0411420:CDS |
| ACTATAACATCCAAATTACA+AGG | 0.560647 | 3_2:+53675415 | None:intergenic |
| CGCGAGCATGCACTCTGTGT+AGG | 0.560878 | 3_2:-53674387 | Msa0411420:CDS |
| ATTGATGAACAAGAACAGAA+TGG | 0.562671 | 3_2:-53678134 | Msa0411420:CDS |
| GCTCACGCTGTCAAAGGCAT+TGG | 0.566987 | 3_2:-53674863 | Msa0411420:CDS |
| AGGAATGAGACCCAGTCTAT+GGG | 0.569217 | 3_2:+53675967 | None:intergenic |
| TCGAAGAATTCTCATAGCAG+AGG | 0.583840 | 3_2:-53676848 | Msa0411420:intron |
| TGAAGATGAATCGATGGCAT+CGG | 0.585846 | 3_2:-53678159 | Msa0411420:CDS |
| GAAGTTCTTGCCCATAGACT+GGG | 0.586008 | 3_2:-53675977 | Msa0411420:CDS |
| AGATAGATAGTTACATGTTG+AGG | 0.587384 | 3_2:+53678005 | None:intergenic |
| CTTCAGTAAACAGCACATCA+GGG | 0.587393 | 3_2:+53673910 | None:intergenic |
| AAAGAAGAATCAAGAAAGCT+CGG | 0.588115 | 3_2:+53673848 | None:intergenic |
| TAGGAGTTGATAACAGTGTA+CGG | 0.591277 | 3_2:-53676975 | Msa0411420:CDS |
| TGGTCGGGATCAGCAGCGAT+AGG | 0.593736 | 3_2:+53675947 | None:intergenic |
| ACGCATCACGGATGAAGACA+TGG | 0.597126 | 3_2:-53676914 | Msa0411420:CDS |
| ACACTGAAGTGGTTGCCTAA+CGG | 0.604989 | 3_2:-53675544 | Msa0411420:CDS |
| GCGGAAGAAGGCGAAGAAGG+GGG | 0.606959 | 3_2:-53674349 | Msa0411420:CDS |
| TTGTACCGTCCAAATCTTAG+GGG | 0.621870 | 3_2:-53673668 | Msa0411420:three_prime_UTR |
| CTATAACATCCAAATTACAA+GGG | 0.623245 | 3_2:+53675416 | None:intergenic |
| TGAATGCATTGAATGACACC+CGG | 0.623785 | 3_2:-53673615 | Msa0411420:three_prime_UTR |
| TGAAATCAGATACACTGAAG+TGG | 0.623846 | 3_2:-53675555 | Msa0411420:CDS |
| TTCAGTAAACAGCACATCAG+GGG | 0.627383 | 3_2:+53673911 | None:intergenic |
| TATAACATCCAAATTACAAG+GGG | 0.629035 | 3_2:+53675417 | None:intergenic |
| GGGAGTGAGCTTATAGCTGA+AGG | 0.635380 | 3_2:-53675523 | Msa0411420:CDS |
| GTTTGGTAGCAGAAATATGG+AGG | 0.637352 | 3_2:+53678207 | None:intergenic |
| TAGGGAATGCATAAGAGAAG+CGG | 0.637709 | 3_2:-53674368 | Msa0411420:CDS |
| TTAAGCCCCTAAGATTTGGA+CGG | 0.649469 | 3_2:+53673663 | None:intergenic |
| GATGAACAAGAACAGAATGG+AGG | 0.659810 | 3_2:-53678131 | Msa0411420:CDS |
| ATAGTAGCTAAACTTGGACC+TGG | 0.667892 | 3_2:-53675397 | Msa0411420:CDS |
| GGTTGAAGTGAAACGCATCA+CGG | 0.668140 | 3_2:-53676926 | Msa0411420:CDS |
| AGTCATTTACCGGTAAGACG+AGG | 0.670733 | 3_2:+53675672 | None:intergenic |
| TCAGTAAACAGCACATCAGG+GGG | 0.672614 | 3_2:+53673912 | None:intergenic |
| TTATAAATAGATGGTGCCGG+AGG | 0.682634 | 3_2:-53675756 | Msa0411420:intron |
| GTTGTCTGAAGATGAATCGA+TGG | 0.691983 | 3_2:-53678165 | Msa0411420:CDS |
| TTGGTATCGAATGCTTCCCG+AGG | 0.698025 | 3_2:-53674804 | Msa0411420:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTGATTTTGAATATAT+CGG | - | chr3_2:53675069-53675088 | Msa0411420:intron | 10.0% |
| !!! | TTAATATTCATAATTTTTTG+TGG | - | chr3_2:53675282-53675301 | Msa0411420:intron | 10.0% |
| !! | TAAAATTATAAAAACGATAA+AGG | + | chr3_2:53675791-53675810 | None:intergenic | 10.0% |
| !!! | TTTATCGTTTTTATAATTTT+AGG | - | chr3_2:53675790-53675809 | Msa0411420:intron | 10.0% |
| !! | GAATAAGAAAAATAATGAAA+AGG | + | chr3_2:53673885-53673904 | None:intergenic | 15.0% |
| !!! | ATTTAACATTATTCATGTTT+TGG | - | chr3_2:53674805-53674824 | Msa0411420:CDS | 15.0% |
| !! | TGATTCATATAAGAATAAAA+AGG | - | chr3_2:53675182-53675201 | Msa0411420:intron | 15.0% |
| !! | GATTCATATAAGAATAAAAA+GGG | - | chr3_2:53675183-53675202 | Msa0411420:intron | 15.0% |
| !! | CATCTATTTATAAAAAAGAA+AGG | + | chr3_2:53676086-53676105 | None:intergenic | 15.0% |
| !!! | CTTTCTTTTTTATAAATAGA+TGG | - | chr3_2:53676084-53676103 | Msa0411420:intron | 15.0% |
| !! | AATACTGGTAAAAATATATT+AGG | + | chr3_2:53677769-53677788 | None:intergenic | 15.0% |
| !!! | CATAATTGATTTTATGAAAA+AGG | - | chr3_2:53678209-53678228 | Msa0411420:five_prime_UTR | 15.0% |
| !! | TTAGTTAATATACTTCTGTT+TGG | - | chr3_2:53674128-53674147 | Msa0411420:intron | 20.0% |
| !! | TATAGAAATAGCTTATACAT+AGG | + | chr3_2:53674205-53674224 | None:intergenic | 20.0% |
| !!! | TTGTTTGAATTTGCTTATTT+GGG | + | chr3_2:53674531-53674550 | None:intergenic | 20.0% |
| !!! | GTTTGATATTTTTGTTTGTT+CGG | - | chr3_2:53674773-53674792 | Msa0411420:intron | 20.0% |
| !! | TAACTTCTATCAAAATTTCA+AGG | - | chr3_2:53674902-53674921 | Msa0411420:intron | 20.0% |
| !!! | TATATCGGTCAATTTTATTA+AGG | - | chr3_2:53675084-53675103 | Msa0411420:intron | 20.0% |
| !!! | TTATTTAGAACACTAACATT+AGG | - | chr3_2:53675218-53675237 | Msa0411420:intron | 20.0% |
| !!! | TTATGCAATTCTTTTGTTAT+AGG | - | chr3_2:53675346-53675365 | Msa0411420:intron | 20.0% |
| !! | ATAAACAAGAGAAATTAACT+TGG | + | chr3_2:53675394-53675413 | None:intergenic | 20.0% |
| !!! | AATTTTCTTCTTGTTAAAAG+TGG | + | chr3_2:53675472-53675491 | None:intergenic | 20.0% |
| !! | TTGTGTGATAAATAGAAAAT+TGG | - | chr3_2:53675997-53676016 | Msa0411420:CDS | 20.0% |
| !!! | TTAAAAGTCGTAAATGTTTT+TGG | + | chr3_2:53676377-53676396 | None:intergenic | 20.0% |
| !!! | GTTTTTGATATAGAAGATAT+TGG | - | chr3_2:53677217-53677236 | Msa0411420:intron | 20.0% |
| !! | AGATATAAAAATCTAACACT+AGG | + | chr3_2:53677273-53677292 | None:intergenic | 20.0% |
| !! | GGCATATTAAATTAAATTCA+TGG | - | chr3_2:53677595-53677614 | Msa0411420:intron | 20.0% |
| !! | CGTTAAAAAAAATACTTCAT+TGG | + | chr3_2:53677666-53677685 | None:intergenic | 20.0% |
| !! | TACATATCTTAAACTAATAC+TGG | + | chr3_2:53677784-53677803 | None:intergenic | 20.0% |
| !!! | TTTTCCTTTTCATTCATTTT+AGG | + | chr3_2:53678036-53678055 | None:intergenic | 20.0% |
| ! | TTCTAAGTTCATGATGTAAT+CGG | + | chr3_2:53673755-53673774 | None:intergenic | 25.0% |
| !!! | GTTAGAAACTTTTCTGAAAT+GGG | + | chr3_2:53673981-53674000 | None:intergenic | 25.0% |
| !!! | AGTTAGAAACTTTTCTGAAA+TGG | + | chr3_2:53673982-53674001 | None:intergenic | 25.0% |
| ! | AAAGTTTCTAACTTCATAAC+TGG | - | chr3_2:53673989-53674008 | Msa0411420:intron | 25.0% |
| ! | AAGTTTCTAACTTCATAACT+GGG | - | chr3_2:53673990-53674009 | Msa0411420:intron | 25.0% |
| !! | ACTTTGGAAGGATAAAAATT+AGG | - | chr3_2:53674014-53674033 | Msa0411420:intron | 25.0% |
| ! | TTGTGTTTGTAAGCTTATAA+TGG | - | chr3_2:53674079-53674098 | Msa0411420:intron | 25.0% |
| ! | GAGAATAAAATGAAGTCAAA+CGG | - | chr3_2:53674228-53674247 | Msa0411420:intron | 25.0% |
| ! | AGCTTACAAAAATAGCTTAT+AGG | + | chr3_2:53674271-53674290 | None:intergenic | 25.0% |
| ! | AAGCTATACTATACAACTTA+TGG | - | chr3_2:53674286-53674305 | Msa0411420:intron | 25.0% |
| ! | ACTATACAACTTATGGATAT+AGG | - | chr3_2:53674293-53674312 | Msa0411420:CDS | 25.0% |
| !! | GTTGTTTGAATTTGCTTATT+TGG | + | chr3_2:53674532-53674551 | None:intergenic | 25.0% |
| ! | ACAATTTGTGAAAAAACTTG+TGG | + | chr3_2:53674585-53674604 | None:intergenic | 25.0% |
| ! | ACCAGAAGATAAAATCAATT+AGG | - | chr3_2:53674620-53674639 | Msa0411420:intron | 25.0% |
| ! | ATCATCACAGAAAACAAAAT+GGG | + | chr3_2:53675046-53675065 | None:intergenic | 25.0% |
| ! | AATCATCACAGAAAACAAAA+TGG | + | chr3_2:53675047-53675066 | None:intergenic | 25.0% |
| !! | TGTTCTAAATAATCAGTTGA+AGG | + | chr3_2:53675210-53675229 | None:intergenic | 25.0% |
| ! | TAATACCATGTTAGTATGTT+CGG | - | chr3_2:53675310-53675329 | Msa0411420:intron | 25.0% |
| ! | TTATAGGATGTATTGTTTCA+TGG | - | chr3_2:53675362-53675381 | Msa0411420:intron | 25.0% |
| !! | GTTTATCGACTATTATTTCA+TGG | - | chr3_2:53675408-53675427 | Msa0411420:CDS | 25.0% |
| ! | TTAAATTTGTAATAAGCCAG+AGG | - | chr3_2:53675521-53675540 | Msa0411420:CDS | 25.0% |
| ! | TAAAACCTGGATATTCAAAT+TGG | + | chr3_2:53675925-53675944 | None:intergenic | 25.0% |
| ! | GAAATAATATGCATGTTGTT+TGG | - | chr3_2:53676019-53676038 | Msa0411420:CDS | 25.0% |
| !! | ATATTCAACCTTGTTATACA+AGG | + | chr3_2:53676053-53676072 | None:intergenic | 25.0% |
| !! | TTTTTATAAATAGATGGTGC+CGG | - | chr3_2:53676090-53676109 | Msa0411420:intron | 25.0% |
| ! | TATAACATCCAAATTACAAG+GGG | + | chr3_2:53676435-53676454 | None:intergenic | 25.0% |
| ! | CTATAACATCCAAATTACAA+GGG | + | chr3_2:53676436-53676455 | None:intergenic | 25.0% |
| ! | ACTATAACATCCAAATTACA+AGG | + | chr3_2:53676437-53676456 | None:intergenic | 25.0% |
| ! | TAGAAAATAAACAGAGAGAA+GGG | + | chr3_2:53676490-53676509 | None:intergenic | 25.0% |
| ! | ATAGAAAATAAACAGAGAGA+AGG | + | chr3_2:53676491-53676510 | None:intergenic | 25.0% |
| !!! | TTATGAAATTGGTTTGGTAT+AGG | - | chr3_2:53676678-53676697 | Msa0411420:intron | 25.0% |
| ! | TCTATATCAAAAACTTTAGC+TGG | + | chr3_2:53677211-53677230 | None:intergenic | 25.0% |
| ! | TTTCATTTGTAAGTATTACG+TGG | - | chr3_2:53677574-53677593 | Msa0411420:intron | 25.0% |
| ! | ACTAAAATTCTTCTATGTTC+AGG | + | chr3_2:53677640-53677659 | None:intergenic | 25.0% |
| ! | AGATCAAGATGATAAATAAC+CGG | - | chr3_2:53677694-53677713 | Msa0411420:intron | 25.0% |
| ! | TTTGAATTTGTCAAAATCAC+CGG | + | chr3_2:53677716-53677735 | None:intergenic | 25.0% |
| ! | AACTAAAAATTGTGCGAATT+TGG | - | chr3_2:53677809-53677828 | Msa0411420:intron | 25.0% |
| ! | TTGTCCTAAAATGAATGAAA+AGG | - | chr3_2:53678029-53678048 | Msa0411420:CDS | 25.0% |
| ATTGATGAACAAGAACAGAA+TGG | - | chr3_2:53673715-53673734 | Msa0411420:three_prime_UTR | 30.0% | |
| TCTAAGTTCATGATGTAATC+GGG | + | chr3_2:53673754-53673773 | None:intergenic | 30.0% | |
| !!! | TTTTGAAGTTCAAGATGAGT+GGG | + | chr3_2:53673796-53673815 | None:intergenic | 30.0% |
| !!! | TTTTTGAAGTTCAAGATGAG+TGG | + | chr3_2:53673797-53673816 | None:intergenic | 30.0% |
| AGATAGATAGTTACATGTTG+AGG | + | chr3_2:53673847-53673866 | None:intergenic | 30.0% | |
| ! | ACTCTGTTTTGTATCTTTGA+AGG | - | chr3_2:53674049-53674068 | Msa0411420:intron | 30.0% |
| GCATAAATACCTATCATGAT+AGG | - | chr3_2:53674335-53674354 | Msa0411420:CDS | 30.0% | |
| !! | GCTATTTTCATAAGCTATCT+TGG | - | chr3_2:53674403-53674422 | Msa0411420:CDS | 30.0% |
| !! | GCCTAATTGATTTTATCTTC+TGG | + | chr3_2:53674624-53674643 | None:intergenic | 30.0% |
| AATACAAATGCGGCTTAATT+GGG | - | chr3_2:53674645-53674664 | Msa0411420:CDS | 30.0% | |
| CATGTACAAATTCGTTCTAT+TGG | - | chr3_2:53674735-53674754 | Msa0411420:intron | 30.0% | |
| TACAAATTCGTTCTATTGGT+GGG | - | chr3_2:53674739-53674758 | Msa0411420:intron | 30.0% | |
| ACAGATACCATACAATATTC+TGG | - | chr3_2:53674837-53674856 | Msa0411420:CDS | 30.0% | |
| ATAAGCACCAGAATATTGTA+TGG | + | chr3_2:53674847-53674866 | None:intergenic | 30.0% | |
| TCATCACAGAAAACAAAATG+GGG | + | chr3_2:53675045-53675064 | None:intergenic | 30.0% | |
| AATAAAAGGCAAAAGTTCAC+TGG | + | chr3_2:53675248-53675267 | None:intergenic | 30.0% | |
| ! | ACTTTTGCCTTTTATTGAGA+TGG | - | chr3_2:53675252-53675271 | Msa0411420:intron | 30.0% |
| ACTACTTCCATCTCAATAAA+AGG | + | chr3_2:53675262-53675281 | None:intergenic | 30.0% | |
| CAAGAAGAAAATTTGCAACA+AGG | - | chr3_2:53675479-53675498 | Msa0411420:CDS | 30.0% | |
| AAAATCTGATTACCGCTATT+AGG | + | chr3_2:53675757-53675776 | None:intergenic | 30.0% | |
| !!! | ATAATTTTAGGTTCCAACCA+TGG | - | chr3_2:53675802-53675821 | Msa0411420:intron | 30.0% |
| ATATACTCTTTCAATAGCCA+TGG | + | chr3_2:53675822-53675841 | None:intergenic | 30.0% | |
| GTTAGTGTAGATATAAAACC+TGG | + | chr3_2:53675938-53675957 | None:intergenic | 30.0% | |
| ACAAGAAAGTCAGATAATCA+AGG | + | chr3_2:53675981-53676000 | None:intergenic | 30.0% | |
| ! | ATAATATGCATGTTGTTTGG+TGG | - | chr3_2:53676022-53676041 | Msa0411420:CDS | 30.0% |
| ! | AAGAGTTTCAAGTCATTTAC+CGG | + | chr3_2:53676190-53676209 | None:intergenic | 30.0% |
| TATTGTAATATCACCAGACA+AGG | + | chr3_2:53676262-53676281 | None:intergenic | 30.0% | |
| !!! | GTCGTAAATGTTTTTGGTTT+TGG | + | chr3_2:53676371-53676390 | None:intergenic | 30.0% |
| GATGTTATAGTAGCTAAACT+TGG | - | chr3_2:53676446-53676465 | Msa0411420:intron | 30.0% | |
| AGAAAATAAACAGAGAGAAG+GGG | + | chr3_2:53676489-53676508 | None:intergenic | 30.0% | |
| AATGTAGATCTAATGAACTC+AGG | - | chr3_2:53676534-53676553 | Msa0411420:intron | 30.0% | |
| !! | ATAGCAAACTTGCTAAGATA+GGG | + | chr3_2:53676579-53676598 | None:intergenic | 30.0% |
| !! | AATAGCAAACTTGCTAAGAT+AGG | + | chr3_2:53676580-53676599 | None:intergenic | 30.0% |
| !! | AAGTTTGCTATTAATCCAAC+AGG | - | chr3_2:53676588-53676607 | Msa0411420:intron | 30.0% |
| TGATTCAAATTCTGTTGAGT+TGG | - | chr3_2:53676624-53676643 | Msa0411420:intron | 30.0% | |
| GTTCTGGTATGTTATGAAAT+TGG | - | chr3_2:53676667-53676686 | Msa0411420:intron | 30.0% | |
| GGTATGTTATGAAATTGGTT+TGG | - | chr3_2:53676672-53676691 | Msa0411420:intron | 30.0% | |
| TTATGTTATGTACTCCCTAA+CGG | - | chr3_2:53676770-53676789 | Msa0411420:intron | 30.0% | |
| ! | TACAACTTCCAGTTTTCTAT+AGG | + | chr3_2:53676908-53676927 | None:intergenic | 30.0% |
| ! | TGCTAACCACATACTTTTAT+AGG | - | chr3_2:53676949-53676968 | Msa0411420:CDS | 30.0% |
| ! | CGATTTCCTATAAAAGTATG+TGG | + | chr3_2:53676958-53676977 | None:intergenic | 30.0% |
| !! | ATGCTTTGCTTTTATTCTCT+AGG | - | chr3_2:53677129-53677148 | Msa0411420:intron | 30.0% |
| GATATAGAAGATATTGGAAG+AGG | - | chr3_2:53677223-53677242 | Msa0411420:intron | 30.0% | |
| !! | AAATTGTGCGAATTTGGTTT+TGG | - | chr3_2:53677815-53677834 | Msa0411420:intron | 30.0% |
| CAGTAATCCGTATAAAAACT+CGG | + | chr3_2:53677841-53677860 | None:intergenic | 30.0% | |
| CACACATGTAAGATATTTCA+GGG | + | chr3_2:53677872-53677891 | None:intergenic | 30.0% | |
| ACACACATGTAAGATATTTC+AGG | + | chr3_2:53677873-53677892 | None:intergenic | 30.0% | |
| CTAGTTACTATTGAATCAAC+TGG | - | chr3_2:53677907-53677926 | Msa0411420:intron | 30.0% | |
| AAAGAAGAATCAAGAAAGCT+CGG | + | chr3_2:53678004-53678023 | None:intergenic | 30.0% | |
| AATTCTGTACATGATCAGTT+TGG | - | chr3_2:53678055-53678074 | Msa0411420:CDS | 30.0% | |
| ! | GTTGTTTGGTAGCAGAAATA+TGG | + | chr3_2:53673648-53673667 | None:intergenic | 35.0% |
| AACTTCATAACTGGGTACTT+TGG | - | chr3_2:53673998-53674017 | Msa0411420:intron | 35.0% | |
| ACATAAGTGCCTATCATGAT+AGG | + | chr3_2:53674347-53674366 | None:intergenic | 35.0% | |
| GCAAATTCAAACAACCACAT+AGG | - | chr3_2:53674537-53674556 | Msa0411420:intron | 35.0% | |
| ! | GAAACTGTTTTCAACCTATG+TGG | + | chr3_2:53674554-53674573 | None:intergenic | 35.0% |
| CAATTAGGCCAATACAAATG+CGG | - | chr3_2:53674635-53674654 | Msa0411420:CDS | 35.0% | |
| CAATTAAGCCGCATTTGTAT+TGG | + | chr3_2:53674646-53674665 | None:intergenic | 35.0% | |
| CAATACAAATGCGGCTTAAT+TGG | - | chr3_2:53674644-53674663 | Msa0411420:CDS | 35.0% | |
| GTACAAATTCGTTCTATTGG+TGG | - | chr3_2:53674738-53674757 | Msa0411420:intron | 35.0% | |
| !! | TAGGAGTTGATAACAGTGTA+CGG | - | chr3_2:53674874-53674893 | Msa0411420:CDS | 35.0% |
| ! | GAGAATTCTTCGAAAAGCAT+TGG | + | chr3_2:53674994-53675013 | None:intergenic | 35.0% |
| ATCACAGAAAACAAAATGGG+GGG | + | chr3_2:53675043-53675062 | None:intergenic | 35.0% | |
| CATCACAGAAAACAAAATGG+GGG | + | chr3_2:53675044-53675063 | None:intergenic | 35.0% | |
| CATTTCCGAACATACTAACA+TGG | + | chr3_2:53675318-53675337 | None:intergenic | 35.0% | |
| CATGTTAGTATGTTCGGAAA+TGG | - | chr3_2:53675316-53675335 | Msa0411420:intron | 35.0% | |
| TGTAACATGTAATGCATAGC+AGG | + | chr3_2:53675604-53675623 | None:intergenic | 35.0% | |
| GTGTAGTTTAAGCCTAATAG+CGG | - | chr3_2:53675742-53675761 | Msa0411420:CDS | 35.0% | |
| ACCTGGATATTCAAATTGGT+CGG | + | chr3_2:53675921-53675940 | None:intergenic | 35.0% | |
| ! | CTTTTCATTGTTTTCACCTC+CGG | + | chr3_2:53676112-53676131 | None:intergenic | 35.0% |
| ACAACATGTTCGTTGTGAAA+AGG | - | chr3_2:53676149-53676168 | Msa0411420:intron | 35.0% | |
| CAACATGTTCGTTGTGAAAA+GGG | - | chr3_2:53676150-53676169 | Msa0411420:intron | 35.0% | |
| TGAAATCAGATACACTGAAG+TGG | - | chr3_2:53676294-53676313 | Msa0411420:intron | 35.0% | |
| AAAATAAACAGAGAGAAGGG+GGG | + | chr3_2:53676487-53676506 | None:intergenic | 35.0% | |
| GAAAATAAACAGAGAGAAGG+GGG | + | chr3_2:53676488-53676507 | None:intergenic | 35.0% | |
| TTCTATTAACACCCACACTA+AGG | - | chr3_2:53676505-53676524 | Msa0411420:intron | 35.0% | |
| ! | ACATTTGACTTCCTTAGTGT+GGG | + | chr3_2:53676519-53676538 | None:intergenic | 35.0% |
| ! | TACATTTGACTTCCTTAGTG+TGG | + | chr3_2:53676520-53676539 | None:intergenic | 35.0% |
| GAACTCAGGAACTATAAAAC+AGG | - | chr3_2:53676548-53676567 | Msa0411420:intron | 35.0% | |
| ! | CATTAAACTTGATAGCCTGT+TGG | + | chr3_2:53676606-53676625 | None:intergenic | 35.0% |
| !! | TGAAATTGGTTTGGTATAGG+TGG | - | chr3_2:53676681-53676700 | Msa0411420:intron | 35.0% |
| AAGTCAAAACACTCGTATCA+AGG | + | chr3_2:53676857-53676876 | None:intergenic | 35.0% | |
| ! | AACTTCCAGTTTTCTATAGG+AGG | + | chr3_2:53676905-53676924 | None:intergenic | 35.0% |
| ATATATGATGTTCCCTACCT+CGG | + | chr3_2:53677065-53677084 | None:intergenic | 35.0% | |
| AGCAAAGCATACAAATGTCA+GGG | + | chr3_2:53677119-53677138 | None:intergenic | 35.0% | |
| AAGCAAAGCATACAAATGTC+AGG | + | chr3_2:53677120-53677139 | None:intergenic | 35.0% | |
| TGTACTCACGAAAGATGTTA+AGG | - | chr3_2:53677153-53677172 | Msa0411420:intron | 35.0% | |
| GAAAGATGTTAAGGATGAGT+TGG | - | chr3_2:53677162-53677181 | Msa0411420:intron | 35.0% | |
| ACGATGACGCAAAATCAATT+TGG | + | chr3_2:53677331-53677350 | None:intergenic | 35.0% | |
| ATAAGAGAAAGCCAAAGAGA+TGG | + | chr3_2:53677386-53677405 | None:intergenic | 35.0% | |
| AGTGTCTTGATTGTTTGTCT+CGG | - | chr3_2:53677743-53677762 | Msa0411420:intron | 35.0% | |
| !! | GTTTTGGCCGAGTTTTTATA+CGG | - | chr3_2:53677831-53677850 | Msa0411420:intron | 35.0% |
| TGTAAGATATTTCAGGGACT+TGG | + | chr3_2:53677866-53677885 | None:intergenic | 35.0% | |
| TATGAAAGTTCACTCACTGT+TGG | - | chr3_2:53678118-53678137 | Msa0411420:CDS | 35.0% | |
| ATGAAAGTTCACTCACTGTT+GGG | - | chr3_2:53678119-53678138 | Msa0411420:CDS | 35.0% | |
| TTTGTACCGTCCAAATCTTA+GGG | - | chr3_2:53678180-53678199 | Msa0411420:exon | 35.0% | |
| TATGTTAAGCCCCTAAGATT+TGG | + | chr3_2:53678193-53678212 | None:intergenic | 35.0% | |
| ! | AGAGAGAGAGTTTAGGGTTT+AGG | + | chr3_2:53673618-53673637 | None:intergenic | 40.0% |
| ! | GTTTGGTAGCAGAAATATGG+AGG | + | chr3_2:53673645-53673664 | None:intergenic | 40.0% |
| CATTCTCTCTCTTCGTTGTT+TGG | + | chr3_2:53673662-53673681 | None:intergenic | 40.0% | |
| GTTGTCTGAAGATGAATCGA+TGG | - | chr3_2:53673684-53673703 | Msa0411420:three_prime_UTR | 40.0% | |
| TGAAGATGAATCGATGGCAT+CGG | - | chr3_2:53673690-53673709 | Msa0411420:three_prime_UTR | 40.0% | |
| GATGAACAAGAACAGAATGG+AGG | - | chr3_2:53673718-53673737 | Msa0411420:three_prime_UTR | 40.0% | |
| TCATAACTGGGTACTTTGGA+AGG | - | chr3_2:53674002-53674021 | Msa0411420:intron | 40.0% | |
| ATGCTATCAGCTGCAAAACA+GGG | + | chr3_2:53674319-53674338 | None:intergenic | 40.0% | |
| TATGCTATCAGCTGCAAAAC+AGG | + | chr3_2:53674320-53674339 | None:intergenic | 40.0% | |
| AACCAGATACAGAGAGAAGA+CGG | + | chr3_2:53674688-53674707 | None:intergenic | 40.0% | |
| ! | CTATTGGTGGGTATTGTTTC+TGG | - | chr3_2:53674751-53674770 | Msa0411420:intron | 40.0% |
| !! | AGTTGATAACAGTGTACGGT+TGG | - | chr3_2:53674878-53674897 | Msa0411420:CDS | 40.0% |
| GACATGGAGTTTGACATGAT+TGG | - | chr3_2:53674951-53674970 | Msa0411420:intron | 40.0% | |
| TCGAAGAATTCTCATAGCAG+AGG | - | chr3_2:53675001-53675020 | Msa0411420:intron | 40.0% | |
| TCACAGAAAACAAAATGGGG+GGG | + | chr3_2:53675042-53675061 | None:intergenic | 40.0% | |
| ACTCTTTCAATAGCCATGGT+TGG | + | chr3_2:53675818-53675837 | None:intergenic | 40.0% | |
| CCTGGATATTCAAATTGGTC+GGG | + | chr3_2:53675920-53675939 | None:intergenic | 40.0% | |
| TGGACACTCCTTGTATAACA+AGG | - | chr3_2:53676042-53676061 | Msa0411420:intron | 40.0% | |
| ! | TTATAAATAGATGGTGCCGG+AGG | - | chr3_2:53676093-53676112 | Msa0411420:intron | 40.0% |
| ! | GCTGGATCTTTGGAGAATTT+AGG | + | chr3_2:53676413-53676432 | None:intergenic | 40.0% |
| ATAGTAGCTAAACTTGGACC+TGG | - | chr3_2:53676452-53676471 | Msa0411420:intron | 40.0% | |
| AAATAAACAGAGAGAAGGGG+GGG | + | chr3_2:53676486-53676505 | None:intergenic | 40.0% | |
| GTGATGCTATGTATGTGTTC+TGG | - | chr3_2:53676651-53676670 | Msa0411420:intron | 40.0% | |
| !! | ATTGGTTTGGTATAGGTGGA+CGG | - | chr3_2:53676685-53676704 | Msa0411420:intron | 40.0% |
| GCCTTACCAGTTGAGTTTAT+GGG | - | chr3_2:53676792-53676811 | Msa0411420:intron | 40.0% | |
| TCCCATAAACTCAACTGGTA+AGG | + | chr3_2:53676796-53676815 | None:intergenic | 40.0% | |
| CATGTCCTCCTATAGAAAAC+TGG | - | chr3_2:53676897-53676916 | Msa0411420:CDS | 40.0% | |
| TTGGTAAGACACATGCGAAA+TGG | - | chr3_2:53677005-53677024 | Msa0411420:CDS | 40.0% | |
| TATATGATGTTCCCTACCTC+GGG | + | chr3_2:53677064-53677083 | None:intergenic | 40.0% | |
| ! | CTTTCTGTTCTGAACCATGA+TGG | - | chr3_2:53677291-53677310 | Msa0411420:intron | 40.0% |
| CCAATAATACCTCACCATCA+TGG | + | chr3_2:53677308-53677327 | None:intergenic | 40.0% | |
| ! | CCATGATGGTGAGGTATTAT+TGG | - | chr3_2:53677305-53677324 | Msa0411420:intron | 40.0% |
| ATCTCAAGCTTCCATCTCTT+TGG | - | chr3_2:53677372-53677391 | Msa0411420:intron | 40.0% | |
| GATTTGATTGTTGTGTGCAC+AGG | - | chr3_2:53677413-53677432 | Msa0411420:intron | 40.0% | |
| TGTGTGCACAGGTAGAAAAA+AGG | - | chr3_2:53677424-53677443 | Msa0411420:intron | 40.0% | |
| TAGGGAATGCATAAGAGAAG+CGG | - | chr3_2:53677481-53677500 | Msa0411420:intron | 40.0% | |
| TTCAGTAAACAGCACATCAG+GGG | + | chr3_2:53677941-53677960 | None:intergenic | 40.0% | |
| CTTCAGTAAACAGCACATCA+GGG | + | chr3_2:53677942-53677961 | None:intergenic | 40.0% | |
| TACTGAAGCTGTGAAGATTC+TGG | - | chr3_2:53677954-53677973 | Msa0411420:intron | 40.0% | |
| GTTTGTACCGTCCAAATCTT+AGG | - | chr3_2:53678179-53678198 | Msa0411420:exon | 40.0% | |
| TTGTACCGTCCAAATCTTAG+GGG | - | chr3_2:53678181-53678200 | Msa0411420:exon | 40.0% | |
| TTAAGCCCCTAAGATTTGGA+CGG | + | chr3_2:53678189-53678208 | None:intergenic | 40.0% | |
| GGAGAGAGAGAGAGAGTTTA+GGG | + | chr3_2:53673624-53673643 | None:intergenic | 45.0% | |
| AGGAGAGAGAGAGAGAGTTT+AGG | + | chr3_2:53673625-53673644 | None:intergenic | 45.0% | |
| CAAGAACAGAATGGAGGAAG+AGG | - | chr3_2:53673724-53673743 | Msa0411420:three_prime_UTR | 45.0% | |
| TAGCATAAGCACCTGTGAGA+CGG | + | chr3_2:53674499-53674518 | None:intergenic | 45.0% | |
| CTCACAGGTGCTTATGCTAA+TGG | - | chr3_2:53674500-53674519 | Msa0411420:intron | 45.0% | |
| CAGAGAGAAGACGGGAATAA+AGG | + | chr3_2:53674679-53674698 | None:intergenic | 45.0% | |
| ACCAGATACAGAGAGAAGAC+GGG | + | chr3_2:53674687-53674706 | None:intergenic | 45.0% | |
| TCTGGTGCTTATGCAGCATT+AGG | - | chr3_2:53674855-53674874 | Msa0411420:CDS | 45.0% | |
| GGTTGAAGTGAAACGCATCA+CGG | - | chr3_2:53674923-53674942 | Msa0411420:intron | 45.0% | |
| GAAGTTCTTGCCCATAGACT+GGG | - | chr3_2:53675872-53675891 | Msa0411420:intron | 45.0% | |
| AGGAATGAGACCCAGTCTAT+GGG | + | chr3_2:53675885-53675904 | None:intergenic | 45.0% | |
| TAGGAATGAGACCCAGTCTA+TGG | + | chr3_2:53675886-53675905 | None:intergenic | 45.0% | |
| CCCGACCAATTTGAATATCC+AGG | - | chr3_2:53675917-53675936 | Msa0411420:intron | 45.0% | |
| AGTCATTTACCGGTAAGACG+AGG | + | chr3_2:53676180-53676199 | None:intergenic | 45.0% | |
| CAGCTATTTGACTCCTTGTC+TGG | - | chr3_2:53676246-53676265 | Msa0411420:intron | 45.0% | |
| ACACTGAAGTGGTTGCCTAA+CGG | - | chr3_2:53676305-53676324 | Msa0411420:intron | 45.0% | |
| ! | TTTTGGATCAGCAGCTGACT+TGG | + | chr3_2:53676354-53676373 | None:intergenic | 45.0% |
| ATTACAAGGGGCTGGATCTT+TGG | + | chr3_2:53676423-53676442 | None:intergenic | 45.0% | |
| AGATCCAGCCCCTTGTAATT+TGG | - | chr3_2:53676424-53676443 | Msa0411420:intron | 45.0% | |
| ACATCCAAATTACAAGGGGC+TGG | + | chr3_2:53676431-53676450 | None:intergenic | 45.0% | |
| GGCCTTACCAGTTGAGTTTA+TGG | - | chr3_2:53676791-53676810 | Msa0411420:intron | 45.0% | |
| TGGCATCCCATAAACTCAAC+TGG | + | chr3_2:53676801-53676820 | None:intergenic | 45.0% | |
| ! | TGTTCTGAACCATGATGGTG+AGG | - | chr3_2:53677296-53677315 | Msa0411420:intron | 45.0% |
| CACAGGTAGAAAAAAGGCTG+TGG | - | chr3_2:53677430-53677449 | Msa0411420:intron | 45.0% | |
| TGCATAAGAGAAGCGGAAGA+AGG | - | chr3_2:53677488-53677507 | Msa0411420:intron | 45.0% | |
| TCAGTAAACAGCACATCAGG+GGG | + | chr3_2:53677940-53677959 | None:intergenic | 45.0% | |
| GCTTCAGTAAACAGCACATC+AGG | + | chr3_2:53677943-53677962 | None:intergenic | 45.0% | |
| !! | AGATGAGTGGGAAGCGTTGA+AGG | + | chr3_2:53673784-53673803 | None:intergenic | 50.0% |
| ! | GTTTTCCCAAACCGTCTCAC+AGG | - | chr3_2:53674485-53674504 | Msa0411420:intron | 50.0% |
| AAGCACCTGTGAGACGGTTT+GGG | + | chr3_2:53674493-53674512 | None:intergenic | 50.0% | |
| TAAGCACCTGTGAGACGGTT+TGG | + | chr3_2:53674494-53674513 | None:intergenic | 50.0% | |
| TCCCGTCTTCTCTCTGTATC+TGG | - | chr3_2:53674683-53674702 | Msa0411420:CDS | 50.0% | |
| ACGCATCACGGATGAAGACA+TGG | - | chr3_2:53674935-53674954 | Msa0411420:intron | 50.0% | |
| !! | CGAAAAGCATTGGCAACTGC+TGG | + | chr3_2:53674984-53675003 | None:intergenic | 50.0% |
| CAGAAAACAAAATGGGGGGG+TGG | + | chr3_2:53675039-53675058 | None:intergenic | 50.0% | |
| AGGAGTCCAGTCCTATTGCA+TGG | - | chr3_2:53675541-53675560 | Msa0411420:CDS | 50.0% | |
| AGTCCAGTCCTATTGCATGG+AGG | - | chr3_2:53675544-53675563 | Msa0411420:CDS | 50.0% | |
| GTCCAGTCCTATTGCATGGA+GGG | - | chr3_2:53675545-53675564 | Msa0411420:CDS | 50.0% | |
| AGTCCTATTGCATGGAGGGA+GGG | - | chr3_2:53675549-53675568 | Msa0411420:CDS | 50.0% | |
| TATCCCTCCCTCCATGCAAT+AGG | + | chr3_2:53675555-53675574 | None:intergenic | 50.0% | |
| CGAAGTTCTTGCCCATAGAC+TGG | - | chr3_2:53675871-53675890 | Msa0411420:intron | 50.0% | |
| AAGGGTCAACCTCGTCTTAC+CGG | - | chr3_2:53676168-53676187 | Msa0411420:intron | 50.0% | |
| CACTGAAGTGGTTGCCTAAC+GGG | - | chr3_2:53676306-53676325 | Msa0411420:intron | 50.0% | |
| GCTATAAGCTCACTCCCGTT+AGG | + | chr3_2:53676323-53676342 | None:intergenic | 50.0% | |
| GGGAGTGAGCTTATAGCTGA+AGG | - | chr3_2:53676326-53676345 | Msa0411420:intron | 50.0% | |
| AGCTAAACTTGGACCTGGTC+AGG | - | chr3_2:53676457-53676476 | Msa0411420:intron | 50.0% | |
| CTCAACTGGTAAGGCCGTTA+GGG | + | chr3_2:53676787-53676806 | None:intergenic | 50.0% | |
| ACTCAACTGGTAAGGCCGTT+AGG | + | chr3_2:53676788-53676807 | None:intergenic | 50.0% | |
| TGGGATGCCATGAGTCTATG+CGG | - | chr3_2:53676811-53676830 | Msa0411420:intron | 50.0% | |
| CTTGAAGCTCACGCTGTCAA+AGG | - | chr3_2:53676980-53676999 | Msa0411420:CDS | 50.0% | |
| GACACATGCGAAATGGTCTC+CGG | - | chr3_2:53677012-53677031 | Msa0411420:CDS | 50.0% | |
| CGATACCAAGCAGTAGCAAC+CGG | + | chr3_2:53677034-53677053 | None:intergenic | 50.0% | |
| ! | TTGGTATCGAATGCTTCCCG+AGG | - | chr3_2:53677045-53677064 | Msa0411420:intron | 50.0% |
| TATCGAATGCTTCCCGAGGT+AGG | - | chr3_2:53677049-53677068 | Msa0411420:intron | 50.0% | |
| ATCGAATGCTTCCCGAGGTA+GGG | - | chr3_2:53677050-53677069 | Msa0411420:intron | 50.0% | |
| AAGCGGAAGAAGGCGAAGAA+GGG | - | chr3_2:53677498-53677517 | Msa0411420:intron | 50.0% | |
| AAGGGGGAGAAGGGGAAAAA+TGG | - | chr3_2:53677516-53677535 | Msa0411420:intron | 50.0% | |
| GCAATAGGACTGGACTCCTC+TGG | + | chr3_2:53675540-53675559 | None:intergenic | 55.0% | |
| CTCCCTCCATGCAATAGGAC+TGG | + | chr3_2:53675550-53675569 | None:intergenic | 55.0% | |
| CAGTCCTATTGCATGGAGGG+AGG | - | chr3_2:53675548-53675567 | Msa0411420:CDS | 55.0% | |
| GGGATGCCATGAGTCTATGC+GGG | - | chr3_2:53676812-53676831 | Msa0411420:intron | 55.0% | |
| GGATGCCATGAGTCTATGCG+GGG | - | chr3_2:53676813-53676832 | Msa0411420:intron | 55.0% | |
| GATGCCATGAGTCTATGCGG+GGG | - | chr3_2:53676814-53676833 | Msa0411420:intron | 55.0% | |
| TACACCCCCGCATAGACTCA+TGG | + | chr3_2:53676821-53676840 | None:intergenic | 55.0% | |
| ! | GCTCACGCTGTCAAAGGCAT+TGG | - | chr3_2:53676986-53677005 | Msa0411420:CDS | 55.0% |
| GCGAGCATGCACTCTGTGTA+GGG | - | chr3_2:53677463-53677482 | Msa0411420:intron | 55.0% | |
| GAAGCGGAAGAAGGCGAAGA+AGG | - | chr3_2:53677497-53677516 | Msa0411420:intron | 55.0% | |
| AGCGGAAGAAGGCGAAGAAG+GGG | - | chr3_2:53677499-53677518 | Msa0411420:intron | 55.0% | |
| AAGGCGAAGAAGGGGGAGAA+GGG | - | chr3_2:53677507-53677526 | Msa0411420:intron | 55.0% | |
| TGGTCGGGATCAGCAGCGAT+AGG | + | chr3_2:53675905-53675924 | None:intergenic | 60.0% | |
| GGTCTCCGGTTGCTACTGCT+TGG | - | chr3_2:53677026-53677045 | Msa0411420:intron | 60.0% | |
| CGCGAGCATGCACTCTGTGT+AGG | - | chr3_2:53677462-53677481 | Msa0411420:intron | 60.0% | |
| GCGGAAGAAGGCGAAGAAGG+GGG | - | chr3_2:53677500-53677519 | Msa0411420:intron | 60.0% | |
| GAAGGCGAAGAAGGGGGAGA+AGG | - | chr3_2:53677506-53677525 | Msa0411420:intron | 60.0% | |
| AGGCGAAGAAGGGGGAGAAG+GGG | - | chr3_2:53677508-53677527 | Msa0411420:intron | 60.0% | |
| GAAGGGGGGGTTACCTGACC+AGG | + | chr3_2:53676473-53676492 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 53673615 | 53678256 | 53673615 | ID=Msa0411420;Name=Msa0411420 |
| chr3_2 | mRNA | 53673615 | 53678256 | 53673615 | ID=Msa0411420-mRNA-1;Parent=Msa0411420;Name=Msa0411420-mRNA-1;_AED=0.08;_eAED=0.08;_QI=64|1|1|1|1|1|9|242|399 |
| chr3_2 | exon | 53673615 | 53673960 | 53673615 | ID=Msa0411420-mRNA-1:exon:10746;Parent=Msa0411420-mRNA-1 |
| chr3_2 | exon | 53674290 | 53674436 | 53674290 | ID=Msa0411420-mRNA-1:exon:10745;Parent=Msa0411420-mRNA-1 |
| chr3_2 | exon | 53674627 | 53674720 | 53674627 | ID=Msa0411420-mRNA-1:exon:10744;Parent=Msa0411420-mRNA-1 |
| chr3_2 | exon | 53674805 | 53674900 | 53674805 | ID=Msa0411420-mRNA-1:exon:10743;Parent=Msa0411420-mRNA-1 |
| chr3_2 | exon | 53675393 | 53675577 | 53675393 | ID=Msa0411420-mRNA-1:exon:10742;Parent=Msa0411420-mRNA-1 |
| chr3_2 | exon | 53675682 | 53675768 | 53675682 | ID=Msa0411420-mRNA-1:exon:10741;Parent=Msa0411420-mRNA-1 |
| chr3_2 | exon | 53675933 | 53676059 | 53675933 | ID=Msa0411420-mRNA-1:exon:10740;Parent=Msa0411420-mRNA-1 |
| chr3_2 | exon | 53676849 | 53677034 | 53676849 | ID=Msa0411420-mRNA-1:exon:10739;Parent=Msa0411420-mRNA-1 |
| chr3_2 | exon | 53678019 | 53678256 | 53678019 | ID=Msa0411420-mRNA-1:exon:10738;Parent=Msa0411420-mRNA-1 |
| chr3_2 | five_prime_UTR | 53678193 | 53678256 | 53678193 | ID=Msa0411420-mRNA-1:five_prime_utr;Parent=Msa0411420-mRNA-1 |
| chr3_2 | CDS | 53678019 | 53678192 | 53678019 | ID=Msa0411420-mRNA-1:cds;Parent=Msa0411420-mRNA-1 |
| chr3_2 | CDS | 53676849 | 53677034 | 53676849 | ID=Msa0411420-mRNA-1:cds;Parent=Msa0411420-mRNA-1 |
| chr3_2 | CDS | 53675933 | 53676059 | 53675933 | ID=Msa0411420-mRNA-1:cds;Parent=Msa0411420-mRNA-1 |
| chr3_2 | CDS | 53675682 | 53675768 | 53675682 | ID=Msa0411420-mRNA-1:cds;Parent=Msa0411420-mRNA-1 |
| chr3_2 | CDS | 53675393 | 53675577 | 53675393 | ID=Msa0411420-mRNA-1:cds;Parent=Msa0411420-mRNA-1 |
| chr3_2 | CDS | 53674805 | 53674900 | 53674805 | ID=Msa0411420-mRNA-1:cds;Parent=Msa0411420-mRNA-1 |
| chr3_2 | CDS | 53674627 | 53674720 | 53674627 | ID=Msa0411420-mRNA-1:cds;Parent=Msa0411420-mRNA-1 |
| chr3_2 | CDS | 53674290 | 53674436 | 53674290 | ID=Msa0411420-mRNA-1:cds;Parent=Msa0411420-mRNA-1 |
| chr3_2 | CDS | 53673857 | 53673960 | 53673857 | ID=Msa0411420-mRNA-1:cds;Parent=Msa0411420-mRNA-1 |
| chr3_2 | three_prime_UTR | 53673615 | 53673856 | 53673615 | ID=Msa0411420-mRNA-1:three_prime_utr;Parent=Msa0411420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
