Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364050 | XP_003600465.1 | 99.176 | 364 | 3 | 0 | 1 | 364 | 1 | 364 | 0.0 | 745 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364050 | G7IYA2 | 99.176 | 364 | 3 | 0 | 1 | 364 | 1 | 364 | 0.0 | 745 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0364050 | Msa0436820 | 0.974788 | 8.899627e-139 | -8.615850e-47 |
| Msa0364050 | Msa0456430 | 0.835357 | 1.758475e-56 | -8.615850e-47 |
| Msa0364050 | Msa0503640 | 0.949495 | 1.134893e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364050 | MtrunA17_Chr3g0103381 | 99.176 | 364 | 3 | 0 | 1 | 364 | 1 | 364 | 0.0 | 745 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364050 | AT3G20920.1 | 69.553 | 358 | 97 | 5 | 1 | 349 | 1 | 355 | 0.0 | 511 |
| Msa0364050 | AT3G20920.2 | 69.274 | 358 | 97 | 6 | 1 | 349 | 1 | 354 | 2.71e-180 | 504 |
Find 85 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTATAGTAGTAATATTAT+TGG | 0.192915 | 3_1:+56738857 | None:intergenic |
| CTTTCCTCTTCATCTTTCTT+TGG | 0.213188 | 3_1:+56735432 | None:intergenic |
| TGCGAGAGTTGTTCAGATTT+TGG | 0.213419 | 3_1:-56735455 | Msa0364050:CDS |
| TCTCCTAGTTTAGCCTTGTC+TGG | 0.298819 | 3_1:-56735088 | Msa0364050:CDS |
| GTAGAGAGAGGATGAGAAAA+AGG | 0.303368 | 3_1:+56736919 | None:intergenic |
| GTAGTAAGAGGTACAATATT+TGG | 0.306952 | 3_1:-56735546 | Msa0364050:intron |
| GCTTCCTCCGCAAGGATGTT+AGG | 0.307824 | 3_1:+56735483 | None:intergenic |
| ATGATAAACAGTATGATTAA+TGG | 0.322992 | 3_1:-56734892 | Msa0364050:exon |
| ATCTCGAAACCAACTCCTTA+TGG | 0.329067 | 3_1:+56737974 | None:intergenic |
| AAAATCCTTGTCGTCCATTT+CGG | 0.335549 | 3_1:+56735408 | None:intergenic |
| TCCGGAGGTTAAAGACATTC+TGG | 0.339148 | 3_1:-56737881 | Msa0364050:CDS |
| CTTGCCCTTGCAGCTTCATC+AGG | 0.350247 | 3_1:+56735336 | None:intergenic |
| TCCTTATCGTTTCGGCTGTC+AGG | 0.374966 | 3_1:-56734733 | Msa0364050:three_prime_UTR |
| TTTAGCCTTGTCTGGGATGA+TGG | 0.378491 | 3_1:-56735080 | Msa0364050:CDS |
| GGCGTTCTATATATTCTTGT+TGG | 0.381574 | 3_1:-56735525 | Msa0364050:CDS |
| TGATAAACAGTATGATTAAT+GGG | 0.387342 | 3_1:-56734891 | Msa0364050:exon |
| GCCTCACAAGGCAGCACAAC+AGG | 0.389832 | 3_1:-56735016 | Msa0364050:CDS |
| CCTCCTCCGACGTCCCTCCT+AGG | 0.389932 | 3_1:-56738683 | Msa0364050:CDS |
| TTAATACTTTACTCGTGCGC+TGG | 0.415375 | 3_1:-56736945 | Msa0364050:CDS |
| TTCTTGTTGGAAAGCGGATC+TGG | 0.418629 | 3_1:-56735512 | Msa0364050:CDS |
| CTCCTAGTTTAGCCTTGTCT+GGG | 0.426101 | 3_1:-56735087 | Msa0364050:CDS |
| GGGACGTCGGAGGAGGGATC+TGG | 0.432011 | 3_1:+56738690 | None:intergenic |
| TGTGAAGAAGGATGTGTATC+AGG | 0.438572 | 3_1:-56738019 | Msa0364050:CDS |
| ATGAAGAGGAAAGGCCGAAA+TGG | 0.448763 | 3_1:-56735422 | Msa0364050:CDS |
| TGAAATAATAACAGTAAAAG+TGG | 0.457976 | 3_1:-56734793 | Msa0364050:three_prime_UTR |
| GCCTGACAGCCGAAACGATA+AGG | 0.459581 | 3_1:+56734732 | None:intergenic |
| CTTCCTCCGCAAGGATGTTA+GGG | 0.465501 | 3_1:+56735484 | None:intergenic |
| TCAGAAACAAGCTGTGAAGA+AGG | 0.469702 | 3_1:-56738031 | Msa0364050:intron |
| CCTAGGAGGGACGTCGGAGG+AGG | 0.470461 | 3_1:+56738683 | None:intergenic |
| TCCAGAATGTCTTTAACCTC+CGG | 0.479317 | 3_1:+56737880 | None:intergenic |
| TGAGAAAGTGAGAGACCATA+AGG | 0.479734 | 3_1:-56737989 | Msa0364050:CDS |
| TTTCTGGCCTGTGTTAACAT+TGG | 0.480409 | 3_1:-56737009 | Msa0364050:CDS |
| ATTAAGAGCTTGCAGCTATG+AGG | 0.484553 | 3_1:+56736963 | None:intergenic |
| TAAGGAGTTGGTTTCGAGAT+GGG | 0.487533 | 3_1:-56737971 | Msa0364050:CDS |
| GGGAAAATTTCTAAATGAGC+AGG | 0.489313 | 3_1:+56737736 | None:intergenic |
| GGTTAAAGACATTCTGGAAT+CGG | 0.497490 | 3_1:-56737875 | Msa0364050:CDS |
| GCCTTGTGAGGCAGCATCAG+TGG | 0.498248 | 3_1:+56735027 | None:intergenic |
| ACAAGGCAGCACAACAGGAC+CGG | 0.505921 | 3_1:-56735011 | Msa0364050:CDS |
| CTCCTCCGACGTCCCTCCTA+GGG | 0.510314 | 3_1:-56738682 | Msa0364050:intron |
| TCCTGTTGTGCTGCCTTGTG+AGG | 0.527738 | 3_1:+56735015 | None:intergenic |
| TACTGTTCATATTACTGTTG+AGG | 0.529799 | 3_1:-56735368 | Msa0364050:CDS |
| TAATACTTTACTCGTGCGCT+GGG | 0.530058 | 3_1:-56736944 | Msa0364050:CDS |
| TCGGTTGGAGCTTCATGCTC+CGG | 0.530823 | 3_1:+56734992 | None:intergenic |
| TCATTGATGATGTTCTTGAA+TGG | 0.531192 | 3_1:-56735111 | Msa0364050:CDS |
| AGTGAGAGACCATAAGGAGT+TGG | 0.536744 | 3_1:-56737983 | Msa0364050:CDS |
| TCCACTGATGCTGCCTCACA+AGG | 0.554001 | 3_1:-56735028 | Msa0364050:CDS |
| CTGATGAAGCTGCAAGGGCA+AGG | 0.555464 | 3_1:-56735335 | Msa0364050:intron |
| TATATATTCTTGTTGGAAAG+CGG | 0.556470 | 3_1:-56735518 | Msa0364050:CDS |
| TTGTAAAACGACATCCACTT+TGG | 0.558359 | 3_1:-56737049 | Msa0364050:CDS |
| TTAAGAGCTTGCAGCTATGA+GGG | 0.560242 | 3_1:+56736964 | None:intergenic |
| ATTGAAAACATAGAGGATGT+AGG | 0.560982 | 3_1:-56734920 | Msa0364050:CDS |
| AAGACATTCTGGAATCGGAC+AGG | 0.563072 | 3_1:-56737870 | Msa0364050:CDS |
| CTTGCAGCTATGAGGGTACA+CGG | 0.568526 | 3_1:+56736971 | None:intergenic |
| GATAGGAGTGTCTGCCAAAG+TGG | 0.568616 | 3_1:+56737035 | None:intergenic |
| ATCCCAGACAAGGCTAAACT+AGG | 0.569530 | 3_1:+56735085 | None:intergenic |
| AGAGAGAGAAAACATAACAT+AGG | 0.569919 | 3_1:-56738781 | Msa0364050:five_prime_UTR |
| CTAGGAGGGACGTCGGAGGA+GGG | 0.570443 | 3_1:+56738684 | None:intergenic |
| TTGGCCAAAGAAAGATGAAG+AGG | 0.571861 | 3_1:-56735436 | Msa0364050:CDS |
| ATAAGGAGTTGGTTTCGAGA+TGG | 0.575545 | 3_1:-56737972 | Msa0364050:CDS |
| TGCACCTGATGAAGCTGCAA+GGG | 0.580240 | 3_1:-56735340 | Msa0364050:CDS |
| CAGAATGTGACTAATGCCAC+AGG | 0.580423 | 3_1:-56735052 | Msa0364050:CDS |
| TTTAGTTCGCTGTGATCGTG+TGG | 0.588939 | 3_1:-56737800 | Msa0364050:CDS |
| GCAGTGTTGCTTCCTCCGCA+AGG | 0.589718 | 3_1:+56735475 | None:intergenic |
| ATGCACCTGATGAAGCTGCA+AGG | 0.597119 | 3_1:-56735341 | Msa0364050:CDS |
| GATCTGGTGCGGAGGAGCGT+CGG | 0.599719 | 3_1:+56738706 | None:intergenic |
| AGAAACCCTAGGAGGGACGT+CGG | 0.603935 | 3_1:+56738677 | None:intergenic |
| AGAAGTCATTGAAAACATAG+AGG | 0.607410 | 3_1:-56734927 | Msa0364050:CDS |
| GGAGGAGGGATCTGGTGCGG+AGG | 0.612395 | 3_1:+56738698 | None:intergenic |
| GTCGGAGGAGGGATCTGGTG+CGG | 0.613470 | 3_1:+56738695 | None:intergenic |
| GAAGAAATCATCGGGAGGCG+CGG | 0.613727 | 3_1:-56738745 | Msa0364050:CDS |
| CAAAGAAAGATGAAGAGGAA+AGG | 0.627979 | 3_1:-56735431 | Msa0364050:CDS |
| GAAGCTCCAACCGATAGTAA+TGG | 0.629679 | 3_1:-56734983 | Msa0364050:CDS |
| AACCCTAGGAGGGACGTCGG+AGG | 0.635303 | 3_1:+56738680 | None:intergenic |
| CAAATAGCCAATGTTAACAC+AGG | 0.636543 | 3_1:+56737002 | None:intergenic |
| TTTGTCCATCATCCCAGACA+AGG | 0.641989 | 3_1:+56735075 | None:intergenic |
| GAGAGAGAGAAACCCTAGGA+GGG | 0.654726 | 3_1:+56738670 | None:intergenic |
| GGCAGCATCAGTGGACCCTG+TGG | 0.656336 | 3_1:+56735036 | None:intergenic |
| ACTTACTCAACAGTAGAGAG+AGG | 0.660007 | 3_1:+56736907 | None:intergenic |
| AAAGGCCGAAATGGACGACA+AGG | 0.665317 | 3_1:-56735413 | Msa0364050:CDS |
| TTGCAGCTATGAGGGTACAC+GGG | 0.668997 | 3_1:+56736972 | None:intergenic |
| TTTCCCTAACATCCTTGCGG+AGG | 0.670145 | 3_1:-56735487 | Msa0364050:CDS |
| AGAGAGAGAGAAACCCTAGG+AGG | 0.684963 | 3_1:+56738669 | None:intergenic |
| GGACAGGAGTTTAGAAACAG+AGG | 0.691778 | 3_1:-56737854 | Msa0364050:CDS |
| AAAATGAAGAAATCATCGGG+AGG | 0.704093 | 3_1:-56738750 | Msa0364050:CDS |
| AGAATGTGACTAATGCCACA+GGG | 0.741132 | 3_1:-56735051 | Msa0364050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTATAGTAGTAATATTAT+TGG | + | chr3_1:56734727-56734746 | None:intergenic | 10.0% |
| !! | TATATAAATATATATCCTTA+TGG | - | chr3_1:56736747-56736766 | Msa0364050:intron | 10.0% |
| !! | ATATAAATATATATCCTTAT+GGG | - | chr3_1:56736748-56736767 | Msa0364050:intron | 10.0% |
| !!! | TCTGAATTTGTTTATTTTTA+TGG | - | chr3_1:56735448-56735467 | Msa0364050:CDS | 15.0% |
| !!! | CTGAATTTGTTTATTTTTAT+GGG | - | chr3_1:56735449-56735468 | Msa0364050:CDS | 15.0% |
| !! | TTGAATTCAAATTGATTATT+CGG | - | chr3_1:56736230-56736249 | Msa0364050:intron | 15.0% |
| !! | CAACACAAATATTAATATTT+AGG | + | chr3_1:56737345-56737364 | None:intergenic | 15.0% |
| !! | CTAAATATTAATATTTGTGT+TGG | - | chr3_1:56737343-56737362 | Msa0364050:intron | 15.0% |
| !!! | TGATTTTTTCTCAATAATAA+CGG | - | chr3_1:56737413-56737432 | Msa0364050:intron | 15.0% |
| !! | ACAACTAATATTTAAATACT+TGG | + | chr3_1:56737947-56737966 | None:intergenic | 15.0% |
| !! | ATGTTAAAAAAATATTCATG+AGG | + | chr3_1:56738014-56738033 | None:intergenic | 15.0% |
| !! | TAAATTCATTCATAAAGTTT+AGG | + | chr3_1:56738277-56738296 | None:intergenic | 15.0% |
| !! | AACTTTATGAATGAATTTAT+AGG | - | chr3_1:56738278-56738297 | Msa0364050:intron | 15.0% |
| !!! | TTTTAAGCTGCTTTTTTAAT+TGG | - | chr3_1:56735247-56735266 | Msa0364050:intron | 20.0% |
| !!! | TTTAAGCTGCTTTTTTAATT+GGG | - | chr3_1:56735248-56735267 | Msa0364050:intron | 20.0% |
| !! | AAAGGTTAAGCAAATTAAAA+TGG | - | chr3_1:56736004-56736023 | Msa0364050:intron | 20.0% |
| !!! | TTTTCTATGTTCGAAATTTA+TGG | - | chr3_1:56736031-56736050 | Msa0364050:intron | 20.0% |
| !! | ATAAAACCAAAAGAATAAGA+CGG | + | chr3_1:56736173-56736192 | None:intergenic | 20.0% |
| !!! | CAATTTTCTCATATACAATA+TGG | + | chr3_1:56736291-56736310 | None:intergenic | 20.0% |
| !!! | TCTTTTCTATATTGTTTGAT+TGG | - | chr3_1:56736700-56736719 | Msa0364050:intron | 20.0% |
| !! | TGAATATATGTAGTTATGAA+TGG | - | chr3_1:56736844-56736863 | Msa0364050:intron | 20.0% |
| !!! | CTTACACTGTTATTTTTAAT+AGG | - | chr3_1:56736956-56736975 | Msa0364050:CDS | 20.0% |
| !! | AAAATAAAAGACACATGTTA+TGG | + | chr3_1:56737579-56737598 | None:intergenic | 20.0% |
| !! | ATCTTCAATAAACATCTAAT+TGG | + | chr3_1:56737660-56737679 | None:intergenic | 20.0% |
| !! | TAATGTAAATACATACTACA+AGG | + | chr3_1:56737753-56737772 | None:intergenic | 20.0% |
| !! | AAAATTATAGAACAAGGTAA+AGG | + | chr3_1:56737831-56737850 | None:intergenic | 20.0% |
| !! | CAAGTTAAAATTATAGAACA+AGG | + | chr3_1:56737837-56737856 | None:intergenic | 20.0% |
| !!! | TTTTTTAACATTGTAGTAAG+AGG | - | chr3_1:56738023-56738042 | Msa0364050:CDS | 20.0% |
| !! | ATGATAAACAGTATGATTAA+TGG | - | chr3_1:56738689-56738708 | Msa0364050:CDS | 20.0% |
| !! | TGATAAACAGTATGATTAAT+GGG | - | chr3_1:56738690-56738709 | Msa0364050:CDS | 20.0% |
| !!! | ACTTTTACACTCAAATAAAA+AGG | + | chr3_1:56738760-56738779 | None:intergenic | 20.0% |
| !! | TGAAATAATAACAGTAAAAG+TGG | - | chr3_1:56738788-56738807 | Msa0364050:five_prime_UTR | 20.0% |
| !!! | GGAAAACATTTTTCTTAATA+AGG | + | chr3_1:56738831-56738850 | None:intergenic | 20.0% |
| ! | CAGAAAAATGAAGAAATCAT+CGG | - | chr3_1:56734827-56734846 | Msa0364050:three_prime_UTR | 25.0% |
| ! | AGAAAAATGAAGAAATCATC+GGG | - | chr3_1:56734828-56734847 | Msa0364050:three_prime_UTR | 25.0% |
| ! | ATGGAAAATTGGAAAAGAAT+TGG | + | chr3_1:56734969-56734988 | None:intergenic | 25.0% |
| ! | TCTAAGAATTTGAGAAGAAA+AGG | + | chr3_1:56735013-56735032 | None:intergenic | 25.0% |
| ! | TTAATTGGGTAACTTGAAAT+TGG | - | chr3_1:56735262-56735281 | Msa0364050:intron | 25.0% |
| !!! | TGTTGTTGTTATGATGTTTT+TGG | - | chr3_1:56735524-56735543 | Msa0364050:CDS | 25.0% |
| ! | AGCAAGAAAAATTACTTACA+GGG | + | chr3_1:56735868-56735887 | None:intergenic | 25.0% |
| !! | ACAATCTGATTATCTTTTTC+AGG | - | chr3_1:56736467-56736486 | Msa0364050:intron | 25.0% |
| !!! | TGCAAAAAAAGCATCATTTT+CGG | + | chr3_1:56736505-56736524 | None:intergenic | 25.0% |
| !!! | AAAATGATGCTTTTTTTGCA+TGG | - | chr3_1:56736505-56736524 | Msa0364050:intron | 25.0% |
| ! | TATACATAAGTGAAGAAACT+AGG | + | chr3_1:56736731-56736750 | None:intergenic | 25.0% |
| ! | TTCATCAGATAATGAATACA+TGG | + | chr3_1:56736828-56736847 | None:intergenic | 25.0% |
| ! | ATATATGTAGTTATGAATGG+AGG | - | chr3_1:56736847-56736866 | Msa0364050:intron | 25.0% |
| ! | TGATAATATACATGGTAGAT+TGG | + | chr3_1:56736906-56736925 | None:intergenic | 25.0% |
| ! | GATATGGATGATAATATACA+TGG | + | chr3_1:56736914-56736933 | None:intergenic | 25.0% |
| !! | AATTCAATGCTGTTTAATAG+GGG | + | chr3_1:56737028-56737047 | None:intergenic | 25.0% |
| !! | CAATTCAATGCTGTTTAATA+GGG | + | chr3_1:56737029-56737048 | None:intergenic | 25.0% |
| !! | TCAATTCAATGCTGTTTAAT+AGG | + | chr3_1:56737030-56737049 | None:intergenic | 25.0% |
| ! | CTTCAAAATCTATGGAAAAA+TGG | + | chr3_1:56737057-56737076 | None:intergenic | 25.0% |
| !! | CATTTTTCCATAGATTTTGA+AGG | - | chr3_1:56737055-56737074 | Msa0364050:CDS | 25.0% |
| !!! | GAATTTTAGTTTGATCTGTA+TGG | - | chr3_1:56737135-56737154 | Msa0364050:intron | 25.0% |
| ! | TGTTTAATTGTTTATCCATG+TGG | - | chr3_1:56737158-56737177 | Msa0364050:intron | 25.0% |
| ! | GTTTAATTGTTTATCCATGT+GGG | - | chr3_1:56737159-56737178 | Msa0364050:intron | 25.0% |
| ! | ACACAAATCAGAATAATCTA+GGG | + | chr3_1:56737222-56737241 | None:intergenic | 25.0% |
| ! | ATTAATATTTGTGTTGGAAG+AGG | - | chr3_1:56737349-56737368 | Msa0364050:intron | 25.0% |
| ! | TTAATATTTGTGTTGGAAGA+GGG | - | chr3_1:56737350-56737369 | Msa0364050:intron | 25.0% |
| ! | GTAATCCAAATAATTCAAGA+AGG | + | chr3_1:56737522-56737541 | None:intergenic | 25.0% |
| !! | ATGGATACTGTGTATTTTAT+AGG | + | chr3_1:56737560-56737579 | None:intergenic | 25.0% |
| !!! | TCTTTTATTTTGTGTGCTTT+TGG | - | chr3_1:56737588-56737607 | Msa0364050:intron | 25.0% |
| !!! | CTTTTATTTTGTGTGCTTTT+GGG | - | chr3_1:56737589-56737608 | Msa0364050:intron | 25.0% |
| !! | CATTATTTCCGTATCTATTT+TGG | - | chr3_1:56737768-56737787 | Msa0364050:CDS | 25.0% |
| !!! | AGTCCAAAAGTATCATATAT+GGG | + | chr3_1:56737808-56737827 | None:intergenic | 25.0% |
| ! | ATGAAATTAACATTCCAGAA+GGG | + | chr3_1:56737863-56737882 | None:intergenic | 25.0% |
| ! | TATGAAATTAACATTCCAGA+AGG | + | chr3_1:56737864-56737883 | None:intergenic | 25.0% |
| !! | TATTTAAATACTTGGTAGCT+AGG | + | chr3_1:56737939-56737958 | None:intergenic | 25.0% |
| ! | TATATATTCTTGTTGGAAAG+CGG | - | chr3_1:56738063-56738082 | Msa0364050:intron | 25.0% |
| ! | TCAGAGCTTAAATTCTTATT+TGG | - | chr3_1:56738338-56738357 | Msa0364050:intron | 25.0% |
| !! | AGCTTAAATTCTTATTTGGT+TGG | - | chr3_1:56738342-56738361 | Msa0364050:intron | 25.0% |
| !!! | AGTTTTTTCACCATTACTAT+CGG | + | chr3_1:56738611-56738630 | None:intergenic | 25.0% |
| ! | TAATGGTGAAAAAACTTTCT+CGG | - | chr3_1:56738615-56738634 | Msa0364050:intron | 25.0% |
| !! | AAATGTTTTCCTTATCGTTT+CGG | - | chr3_1:56738840-56738859 | Msa0364050:five_prime_UTR | 25.0% |
| AGAGAGAGAAAACATAACAT+AGG | - | chr3_1:56734800-56734819 | Msa0364050:three_prime_UTR | 30.0% | |
| !! | AGAAATTGGTGATGGAAAAT+TGG | + | chr3_1:56734980-56734999 | None:intergenic | 30.0% |
| !! | ATTTGAGAAGAAAAGGCATT+GGG | + | chr3_1:56735006-56735025 | None:intergenic | 30.0% |
| ! | AATTTGAGAAGAAAAGGCAT+TGG | + | chr3_1:56735007-56735026 | None:intergenic | 30.0% |
| ! | TCTTTCAGTATTTTGCTGAT+TGG | - | chr3_1:56735079-56735098 | Msa0364050:CDS | 30.0% |
| !!! | ATCCTTTTGCTATTCTAGAT+TGG | - | chr3_1:56735203-56735222 | Msa0364050:intron | 30.0% |
| ! | ATCCAATCTAGAATAGCAAA+AGG | + | chr3_1:56735208-56735227 | None:intergenic | 30.0% |
| TTTGACATGCAAAAGTTGTT+TGG | - | chr3_1:56735486-56735505 | Msa0364050:CDS | 30.0% | |
| TTGACATGCAAAAGTTGTTT+GGG | - | chr3_1:56735487-56735506 | Msa0364050:CDS | 30.0% | |
| CAGCAAGAAAAATTACTTAC+AGG | + | chr3_1:56735869-56735888 | None:intergenic | 30.0% | |
| AACATATATGTGTTTGCATG+TGG | - | chr3_1:56735929-56735948 | Msa0364050:intron | 30.0% | |
| AAATTTATGGTCACTACCAT+TGG | - | chr3_1:56736044-56736063 | Msa0364050:intron | 30.0% | |
| GATCCAATGAACAACATTAT+TGG | - | chr3_1:56736129-56736148 | Msa0364050:intron | 30.0% | |
| !!! | CTTTTGGTTTTATCTTGTGT+AGG | - | chr3_1:56736180-56736199 | Msa0364050:intron | 30.0% |
| CACATAGATATCACAAAAGT+AGG | + | chr3_1:56736259-56736278 | None:intergenic | 30.0% | |
| !! | GTTTCAGTGATTAGTTTGTT+TGG | - | chr3_1:56736437-56736456 | Msa0364050:intron | 30.0% |
| !!! | AAAAGCATCATTTTCGGAAA+AGG | + | chr3_1:56736499-56736518 | None:intergenic | 30.0% |
| !! | GCCAATTTTGTTATATGTTG+CGG | - | chr3_1:56736795-56736814 | Msa0364050:intron | 30.0% |
| ACCGCAACATATAACAAAAT+TGG | + | chr3_1:56736799-56736818 | None:intergenic | 30.0% | |
| TTCAAAATCTCCTAATGTAC+AGG | + | chr3_1:56736882-56736901 | None:intergenic | 30.0% | |
| TCCATATCAGTTATAACAGA+TGG | - | chr3_1:56736926-56736945 | Msa0364050:CDS | 30.0% | |
| CCATATCAGTTATAACAGAT+GGG | - | chr3_1:56736927-56736946 | Msa0364050:CDS | 30.0% | |
| AGTAAACCAATAGACAGTTT+GGG | + | chr3_1:56736983-56737002 | None:intergenic | 30.0% | |
| AAGTAAACCAATAGACAGTT+TGG | + | chr3_1:56736984-56737003 | None:intergenic | 30.0% | |
| ! | TTAATAGGGGTTTAGAATAC+AGG | + | chr3_1:56737015-56737034 | None:intergenic | 30.0% |
| CAAAATCTATGGAAAAATGG+TGG | + | chr3_1:56737054-56737073 | None:intergenic | 30.0% | |
| TAGATTGCCTTCAAAATCTA+TGG | + | chr3_1:56737065-56737084 | None:intergenic | 30.0% | |
| ! | AGAAATTTTGCACTTAGATG+AGG | - | chr3_1:56737101-56737120 | Msa0364050:intron | 30.0% |
| CACAAATCAGAATAATCTAG+GGG | + | chr3_1:56737221-56737240 | None:intergenic | 30.0% | |
| GACACAAATCAGAATAATCT+AGG | + | chr3_1:56737223-56737242 | None:intergenic | 30.0% | |
| TTTGAAAATGCAAGGTTGTT+TGG | - | chr3_1:56737310-56737329 | Msa0364050:intron | 30.0% | |
| !! | GCATGCATTTTTCAGTAAAA+GGG | + | chr3_1:56737500-56737519 | None:intergenic | 30.0% |
| TAGTCCAATATGTGTGAAAA+AGG | - | chr3_1:56737701-56737720 | Msa0364050:intron | 30.0% | |
| !!! | ATTTCCGTATCTATTTTGGT+AGG | - | chr3_1:56737772-56737791 | Msa0364050:CDS | 30.0% |
| CTAACCTACCAAAATAGATA+CGG | + | chr3_1:56737779-56737798 | None:intergenic | 30.0% | |
| ! | TAGCCCATATATGATACTTT+TGG | - | chr3_1:56737802-56737821 | Msa0364050:CDS | 30.0% |
| !! | GAGTCCAAAAGTATCATATA+TGG | + | chr3_1:56737809-56737828 | None:intergenic | 30.0% |
| !!! | ATTTTAACTTGTATCCCTTC+TGG | - | chr3_1:56737846-56737865 | Msa0364050:CDS | 30.0% |
| TTTCATAACATTTCCCCTAA+AGG | - | chr3_1:56737877-56737896 | Msa0364050:CDS | 30.0% | |
| TTCATAACATTTCCCCTAAA+GGG | - | chr3_1:56737878-56737897 | Msa0364050:CDS | 30.0% | |
| ! | GTAGTAAGAGGTACAATATT+TGG | - | chr3_1:56738035-56738054 | Msa0364050:intron | 30.0% |
| TACTGTTCATATTACTGTTG+AGG | - | chr3_1:56738213-56738232 | Msa0364050:intron | 30.0% | |
| ACCAAAGCAACAAGTTATAA+CGG | + | chr3_1:56738417-56738436 | None:intergenic | 30.0% | |
| !! | TCATTGATGATGTTCTTGAA+TGG | - | chr3_1:56738470-56738489 | Msa0364050:intron | 30.0% |
| AGAAGTCATTGAAAACATAG+AGG | - | chr3_1:56738654-56738673 | Msa0364050:intron | 30.0% | |
| ATTGAAAACATAGAGGATGT+AGG | - | chr3_1:56738661-56738680 | Msa0364050:intron | 30.0% | |
| ! | CTAGTCACTAGATGTATTTT+AGG | + | chr3_1:56738726-56738745 | None:intergenic | 30.0% |
| AAAATGAAGAAATCATCGGG+AGG | - | chr3_1:56734831-56734850 | Msa0364050:three_prime_UTR | 35.0% | |
| CAAAATGATCATGTGCAAAG+GGG | + | chr3_1:56735408-56735427 | None:intergenic | 35.0% | |
| CCAAAATGATCATGTGCAAA+GGG | + | chr3_1:56735409-56735428 | None:intergenic | 35.0% | |
| ! | CCTTTGCACATGATCATTTT+GGG | - | chr3_1:56735407-56735426 | Msa0364050:CDS | 35.0% |
| GAGCTTCTTGAAAAATCATC+CGG | - | chr3_1:56735682-56735701 | Msa0364050:intron | 35.0% | |
| !! | GGTTAAAGACATTCTGGAAT+CGG | - | chr3_1:56735706-56735725 | Msa0364050:intron | 35.0% |
| GGGAAAATTTCTAAATGAGC+AGG | + | chr3_1:56735848-56735867 | None:intergenic | 35.0% | |
| GTAGTTATTCCTCTGTTCAA+AGG | - | chr3_1:56735986-56736005 | Msa0364050:intron | 35.0% | |
| TTTGCTTAACCTTTGAACAG+AGG | + | chr3_1:56735998-56736017 | None:intergenic | 35.0% | |
| GGAATAACATCAAAGACCAA+TGG | + | chr3_1:56736063-56736082 | None:intergenic | 35.0% | |
| ATGTTGTTCATTGGATCAAC+AGG | + | chr3_1:56736126-56736145 | None:intergenic | 35.0% | |
| TGGCCAATAATGTTGTTCAT+TGG | + | chr3_1:56736135-56736154 | None:intergenic | 35.0% | |
| TTGTAAAACGACATCCACTT+TGG | - | chr3_1:56736532-56736551 | Msa0364050:intron | 35.0% | |
| !!! | AGACACTCCTATCTTTTTTC+TGG | - | chr3_1:56736556-56736575 | Msa0364050:intron | 35.0% |
| CAAATAGCCAATGTTAACAC+AGG | + | chr3_1:56736582-56736601 | None:intergenic | 35.0% | |
| AACATTTGTAACAGCCCATA+AGG | + | chr3_1:56736765-56736784 | None:intergenic | 35.0% | |
| GAGAAAAAAGCCTGTACATT+AGG | - | chr3_1:56736869-56736888 | Msa0364050:intron | 35.0% | |
| CCCATCTGTTATAACTGATA+TGG | + | chr3_1:56736930-56736949 | None:intergenic | 35.0% | |
| TATTAGTATACTCTCCCACA+TGG | + | chr3_1:56737176-56737195 | None:intergenic | 35.0% | |
| !!! | GTGTTTCTGGTAGTTTTCTA+GGG | - | chr3_1:56737276-56737295 | Msa0364050:intron | 35.0% |
| !!! | TGTTTCTGGTAGTTTTCTAG+GGG | - | chr3_1:56737277-56737296 | Msa0364050:intron | 35.0% |
| !!! | TGCATGGTTTTGAAAATGCA+AGG | - | chr3_1:56737302-56737321 | Msa0364050:intron | 35.0% |
| !! | GGCATGCATTTTTCAGTAAA+AGG | + | chr3_1:56737501-56737520 | None:intergenic | 35.0% |
| GCATGCCTTCTTGAATTATT+TGG | - | chr3_1:56737514-56737533 | Msa0364050:intron | 35.0% | |
| TTGGGTTTATTCATGCTTGA+TGG | - | chr3_1:56737607-56737626 | Msa0364050:intron | 35.0% | |
| !! | AGAGCCTTTTTCACACATAT+TGG | + | chr3_1:56737708-56737727 | None:intergenic | 35.0% |
| TTTATTCCTTGAGCCCTTTA+GGG | + | chr3_1:56737894-56737913 | None:intergenic | 35.0% | |
| ! | TTTTATTCCTTGAGCCCTTT+AGG | + | chr3_1:56737895-56737914 | None:intergenic | 35.0% |
| ! | GATAAATGCACCCTTTTCTT+AGG | - | chr3_1:56737988-56738007 | Msa0364050:CDS | 35.0% |
| ATTCATGAGGCCTAAGAAAA+GGG | + | chr3_1:56738001-56738020 | None:intergenic | 35.0% | |
| TATTCATGAGGCCTAAGAAA+AGG | + | chr3_1:56738002-56738021 | None:intergenic | 35.0% | |
| GGCGTTCTATATATTCTTGT+TGG | - | chr3_1:56738056-56738075 | Msa0364050:intron | 35.0% | |
| CTTTCCTCTTCATCTTTCTT+TGG | + | chr3_1:56738152-56738171 | None:intergenic | 35.0% | |
| CAAAGAAAGATGAAGAGGAA+AGG | - | chr3_1:56738150-56738169 | Msa0364050:intron | 35.0% | |
| AAAATCCTTGTCGTCCATTT+CGG | + | chr3_1:56738176-56738195 | None:intergenic | 35.0% | |
| ! | CAAATTGTTTTCCCTTCATG+GGG | + | chr3_1:56738378-56738397 | None:intergenic | 35.0% |
| ! | GCAAATTGTTTTCCCTTCAT+GGG | + | chr3_1:56738379-56738398 | None:intergenic | 35.0% |
| ! | TGCAAATTGTTTTCCCTTCA+TGG | + | chr3_1:56738380-56738399 | None:intergenic | 35.0% |
| ! | TTTTCACCATTACTATCGGT+TGG | + | chr3_1:56738607-56738626 | None:intergenic | 35.0% |
| TTGGGTGTAGAAATTGGTGA+TGG | + | chr3_1:56734988-56735007 | None:intergenic | 40.0% | |
| !! | AAGGCATTGGGTGTAGAAAT+TGG | + | chr3_1:56734994-56735013 | None:intergenic | 40.0% |
| CATGTGCAAAGGGGATATAA+AGG | + | chr3_1:56735399-56735418 | None:intergenic | 40.0% | |
| ! | CCCTTTGCACATGATCATTT+TGG | - | chr3_1:56735406-56735425 | Msa0364050:CDS | 40.0% |
| CCCAAAATGATCATGTGCAA+AGG | + | chr3_1:56735410-56735429 | None:intergenic | 40.0% | |
| TCAGAAACAAGCTGTGAAGA+AGG | - | chr3_1:56735550-56735569 | Msa0364050:intron | 40.0% | |
| TGTGAAGAAGGATGTGTATC+AGG | - | chr3_1:56735562-56735581 | Msa0364050:intron | 40.0% | |
| TGAGAAAGTGAGAGACCATA+AGG | - | chr3_1:56735592-56735611 | Msa0364050:intron | 40.0% | |
| ATCTCGAAACCAACTCCTTA+TGG | + | chr3_1:56735610-56735629 | None:intergenic | 40.0% | |
| ! | ATAAGGAGTTGGTTTCGAGA+TGG | - | chr3_1:56735609-56735628 | Msa0364050:intron | 40.0% |
| ! | TAAGGAGTTGGTTTCGAGAT+GGG | - | chr3_1:56735610-56735629 | Msa0364050:intron | 40.0% |
| !! | ACACGTGTCGAGTATTTTAG+AGG | - | chr3_1:56735647-56735666 | Msa0364050:intron | 40.0% |
| !! | CACGTGTCGAGTATTTTAGA+GGG | - | chr3_1:56735648-56735667 | Msa0364050:intron | 40.0% |
| !! | TGTCGAGTATTTTAGAGGGA+AGG | - | chr3_1:56735652-56735671 | Msa0364050:intron | 40.0% |
| CTTCTTGAAAAATCATCCGG+AGG | - | chr3_1:56735685-56735704 | Msa0364050:intron | 40.0% | |
| TCCAGAATGTCTTTAACCTC+CGG | + | chr3_1:56735704-56735723 | None:intergenic | 40.0% | |
| TGGTAAAAACTCTTCGTCCT+GGG | - | chr3_1:56735801-56735820 | Msa0364050:intron | 40.0% | |
| GGAAGAAAAAGCTGTCTACT+TGG | - | chr3_1:56735822-56735841 | Msa0364050:intron | 40.0% | |
| ACACAGGCCAGAAAAAAGAT+AGG | + | chr3_1:56736566-56736585 | None:intergenic | 40.0% | |
| ! | TTTCTGGCCTGTGTTAACAT+TGG | - | chr3_1:56736572-56736591 | Msa0364050:intron | 40.0% |
| TTAAGAGCTTGCAGCTATGA+GGG | + | chr3_1:56736620-56736639 | None:intergenic | 40.0% | |
| ATTAAGAGCTTGCAGCTATG+AGG | + | chr3_1:56736621-56736640 | None:intergenic | 40.0% | |
| TTAATACTTTACTCGTGCGC+TGG | - | chr3_1:56736636-56736655 | Msa0364050:intron | 40.0% | |
| TAATACTTTACTCGTGCGCT+GGG | - | chr3_1:56736637-56736656 | Msa0364050:intron | 40.0% | |
| GTAGAGAGAGGATGAGAAAA+AGG | + | chr3_1:56736665-56736684 | None:intergenic | 40.0% | |
| ACTTACTCAACAGTAGAGAG+AGG | + | chr3_1:56736677-56736696 | None:intergenic | 40.0% | |
| ATAGGACCCAAACTGTCTAT+TGG | - | chr3_1:56736974-56736993 | Msa0364050:CDS | 40.0% | |
| TTTGCACTTAGATGAGGAAG+AGG | - | chr3_1:56737107-56737126 | Msa0364050:intron | 40.0% | |
| !!! | GGTGTTTCTGGTAGTTTTCT+AGG | - | chr3_1:56737275-56737294 | Msa0364050:intron | 40.0% |
| !! | TAGTTTTCTAGGGGTTTGCA+TGG | - | chr3_1:56737286-56737305 | Msa0364050:intron | 40.0% |
| TTATTCCTTGAGCCCTTTAG+GGG | + | chr3_1:56737893-56737912 | None:intergenic | 40.0% | |
| ! | GTTTTTCCCTAACATCCTTG+CGG | - | chr3_1:56738091-56738110 | Msa0364050:intron | 40.0% |
| ! | TGCGAGAGTTGTTCAGATTT+TGG | - | chr3_1:56738126-56738145 | Msa0364050:intron | 40.0% |
| TTGGCCAAAGAAAGATGAAG+AGG | - | chr3_1:56738145-56738164 | Msa0364050:intron | 40.0% | |
| ! | GACAAGGATTTTCTATGCTG+TGG | - | chr3_1:56738184-56738203 | Msa0364050:intron | 40.0% |
| ! | AAGGATTTTCTATGCTGTGG+TGG | - | chr3_1:56738187-56738206 | Msa0364050:intron | 40.0% |
| !! | GCCGTTATAACTTGTTGCTT+TGG | - | chr3_1:56738413-56738432 | Msa0364050:intron | 40.0% |
| AGAATGTGACTAATGCCACA+GGG | - | chr3_1:56738530-56738549 | Msa0364050:intron | 40.0% | |
| AAACCCTAGAGAGAGAGAGA+GGG | + | chr3_1:56734946-56734965 | None:intergenic | 45.0% | |
| AGTGAGAGACCATAAGGAGT+TGG | - | chr3_1:56735598-56735617 | Msa0364050:intron | 45.0% | |
| !!! | TTCGAGATGGGCTGTTTTAC+AGG | - | chr3_1:56735622-56735641 | Msa0364050:intron | 45.0% |
| TCCGGAGGTTAAAGACATTC+TGG | - | chr3_1:56735700-56735719 | Msa0364050:intron | 45.0% | |
| !! | AAGACATTCTGGAATCGGAC+AGG | - | chr3_1:56735711-56735730 | Msa0364050:intron | 45.0% |
| GGACAGGAGTTTAGAAACAG+AGG | - | chr3_1:56735727-56735746 | Msa0364050:intron | 45.0% | |
| ! | TTTAGTTCGCTGTGATCGTG+TGG | - | chr3_1:56735781-56735800 | Msa0364050:intron | 45.0% |
| GTGGTAAAAACTCTTCGTCC+TGG | - | chr3_1:56735800-56735819 | Msa0364050:intron | 45.0% | |
| !! | GTAGACAGCTTTTTCTTCCC+AGG | + | chr3_1:56735821-56735840 | None:intergenic | 45.0% |
| TGTTATTCCTCTGCCTGACA+TGG | - | chr3_1:56736074-56736093 | Msa0364050:intron | 45.0% | |
| GTTATTCCTCTGCCTGACAT+GGG | - | chr3_1:56736075-56736094 | Msa0364050:intron | 45.0% | |
| ! | ATTGGCCACCTTTTTGTGTG+TGG | - | chr3_1:56736147-56736166 | Msa0364050:intron | 45.0% |
| TAAGACGGCCACACACAAAA+AGG | + | chr3_1:56736158-56736177 | None:intergenic | 45.0% | |
| !! | GTGTGGCCGTCTTATTCTTT+TGG | - | chr3_1:56736164-56736183 | Msa0364050:intron | 45.0% |
| ! | AGGGGTTTAGAATACAGGTG+TGG | + | chr3_1:56737010-56737029 | None:intergenic | 45.0% |
| TCTAGGGGAATCATGAAGAC+AGG | + | chr3_1:56737206-56737225 | None:intergenic | 45.0% | |
| TGTCAGACCTTTCCATGAAC+TGG | - | chr3_1:56737239-56737258 | Msa0364050:intron | 45.0% | |
| ACCTTTCCATGAACTGGAGA+TGG | - | chr3_1:56737245-56737264 | Msa0364050:intron | 45.0% | |
| ACCATCTCCAGTTCATGGAA+AGG | + | chr3_1:56737249-56737268 | None:intergenic | 45.0% | |
| GCATAACCATCTCCAGTTCA+TGG | + | chr3_1:56737254-56737273 | None:intergenic | 45.0% | |
| TGAACTGGAGATGGTTATGC+TGG | - | chr3_1:56737254-56737273 | Msa0364050:intron | 45.0% | |
| GATGGTTATGCTGGTGTTTC+TGG | - | chr3_1:56737263-56737282 | Msa0364050:intron | 45.0% | |
| TTCTTGTTGGAAAGCGGATC+TGG | - | chr3_1:56738069-56738088 | Msa0364050:intron | 45.0% | |
| ATGAAGAGGAAAGGCCGAAA+TGG | - | chr3_1:56738159-56738178 | Msa0364050:intron | 45.0% | |
| !! | TGTTGCTTTGGTCTTTGTGC+AGG | - | chr3_1:56738425-56738444 | Msa0364050:intron | 45.0% |
| !! | TCTCCTAGTTTAGCCTTGTC+TGG | - | chr3_1:56738493-56738512 | Msa0364050:intron | 45.0% |
| !! | CTCCTAGTTTAGCCTTGTCT+GGG | - | chr3_1:56738494-56738513 | Msa0364050:intron | 45.0% |
| ATCCCAGACAAGGCTAAACT+AGG | + | chr3_1:56738499-56738518 | None:intergenic | 45.0% | |
| !! | TTTAGCCTTGTCTGGGATGA+TGG | - | chr3_1:56738501-56738520 | Msa0364050:intron | 45.0% |
| TTTGTCCATCATCCCAGACA+AGG | + | chr3_1:56738509-56738528 | None:intergenic | 45.0% | |
| CAGAATGTGACTAATGCCAC+AGG | - | chr3_1:56738529-56738548 | Msa0364050:intron | 45.0% | |
| GAAGCTCCAACCGATAGTAA+TGG | - | chr3_1:56738598-56738617 | Msa0364050:intron | 45.0% | |
| GAGAGAGAGAAACCCTAGGA+GGG | + | chr3_1:56734914-56734933 | None:intergenic | 50.0% | |
| AGAGAGAGAGAAACCCTAGG+AGG | + | chr3_1:56734915-56734934 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAAACCCT+AGG | + | chr3_1:56734918-56734937 | None:intergenic | 50.0% | |
| TCTCCCTCTCTCTCTCTCTA+GGG | - | chr3_1:56734940-56734959 | Msa0364050:CDS | 50.0% | |
| GAAACCCTAGAGAGAGAGAG+AGG | + | chr3_1:56734947-56734966 | None:intergenic | 50.0% | |
| CAGGTCATTCTTTCTCACCG+TGG | + | chr3_1:56736107-56736126 | None:intergenic | 50.0% | |
| !! | GATAGGAGTGTCTGCCAAAG+TGG | + | chr3_1:56736549-56736568 | None:intergenic | 50.0% |
| ! | TTGCAGCTATGAGGGTACAC+GGG | + | chr3_1:56736612-56736631 | None:intergenic | 50.0% |
| ! | CTTGCAGCTATGAGGGTACA+CGG | + | chr3_1:56736613-56736632 | None:intergenic | 50.0% |
| CATTTCCCCTAAAGGGCTCA+AGG | - | chr3_1:56737885-56737904 | Msa0364050:CDS | 50.0% | |
| TTTCCCTAACATCCTTGCGG+AGG | - | chr3_1:56738094-56738113 | Msa0364050:intron | 50.0% | |
| CTTCCTCCGCAAGGATGTTA+GGG | + | chr3_1:56738100-56738119 | None:intergenic | 50.0% | |
| AAAGGCCGAAATGGACGACA+AGG | - | chr3_1:56738168-56738187 | Msa0364050:intron | 50.0% | |
| ATGCACCTGATGAAGCTGCA+AGG | - | chr3_1:56738240-56738259 | Msa0364050:intron | 50.0% | |
| TGCACCTGATGAAGCTGCAA+GGG | - | chr3_1:56738241-56738260 | Msa0364050:intron | 50.0% | |
| GATCTACGACACCCCATGAA+GGG | - | chr3_1:56738364-56738383 | Msa0364050:intron | 50.0% | |
| TCCTTATCGTTTCGGCTGTC+AGG | - | chr3_1:56738848-56738867 | Msa0364050:five_prime_UTR | 50.0% | |
| GAAGAAATCATCGGGAGGCG+CGG | - | chr3_1:56734836-56734855 | Msa0364050:three_prime_UTR | 55.0% | |
| AGAAACCCTAGGAGGGACGT+CGG | + | chr3_1:56734907-56734926 | None:intergenic | 55.0% | |
| CTCTCCCTCTCTCTCTCTCT+AGG | - | chr3_1:56734939-56734958 | Msa0364050:CDS | 55.0% | |
| GACGGCCACACACAAAAAGG+TGG | + | chr3_1:56736155-56736174 | None:intergenic | 55.0% | |
| GCTTCCTCCGCAAGGATGTT+AGG | + | chr3_1:56738101-56738120 | None:intergenic | 55.0% | |
| CTTGCCCTTGCAGCTTCATC+AGG | + | chr3_1:56738248-56738267 | None:intergenic | 55.0% | |
| CTGATGAAGCTGCAAGGGCA+AGG | - | chr3_1:56738246-56738265 | Msa0364050:intron | 55.0% | |
| GGATCTACGACACCCCATGA+AGG | - | chr3_1:56738363-56738382 | Msa0364050:intron | 55.0% | |
| TCCACTGATGCTGCCTCACA+AGG | - | chr3_1:56738553-56738572 | Msa0364050:intron | 55.0% | |
| TCCTGTTGTGCTGCCTTGTG+AGG | + | chr3_1:56738569-56738588 | None:intergenic | 55.0% | |
| ACAAGGCAGCACAACAGGAC+CGG | - | chr3_1:56738570-56738589 | Msa0364050:intron | 55.0% | |
| TCGGTTGGAGCTTCATGCTC+CGG | + | chr3_1:56738592-56738611 | None:intergenic | 55.0% | |
| GCCTGACAGCCGAAACGATA+AGG | + | chr3_1:56738852-56738871 | None:intergenic | 55.0% | |
| CACACACCCATGTCAGGCAG+AGG | + | chr3_1:56736084-56736103 | None:intergenic | 60.0% | |
| CCTGACATGGGTGTGTGCCA+CGG | - | chr3_1:56736087-56736106 | Msa0364050:intron | 60.0% | |
| !! | GCAGTGTTGCTTCCTCCGCA+AGG | + | chr3_1:56738109-56738128 | None:intergenic | 60.0% |
| GCCTTGTGAGGCAGCATCAG+TGG | + | chr3_1:56738557-56738576 | None:intergenic | 60.0% | |
| GCCTCACAAGGCAGCACAAC+AGG | - | chr3_1:56738565-56738584 | Msa0364050:intron | 60.0% | |
| ! | GATCTGGTGCGGAGGAGCGT+CGG | + | chr3_1:56734878-56734897 | None:intergenic | 65.0% |
| GTCGGAGGAGGGATCTGGTG+CGG | + | chr3_1:56734889-56734908 | None:intergenic | 65.0% | |
| CTAGGAGGGACGTCGGAGGA+GGG | + | chr3_1:56734900-56734919 | None:intergenic | 65.0% | |
| CTCCTCCGACGTCCCTCCTA+GGG | - | chr3_1:56734899-56734918 | Msa0364050:CDS | 65.0% | |
| AACCCTAGGAGGGACGTCGG+AGG | + | chr3_1:56734904-56734923 | None:intergenic | 65.0% | |
| CCGTGGCACACACCCATGTC+AGG | + | chr3_1:56736090-56736109 | None:intergenic | 65.0% | |
| GGCAGCATCAGTGGACCCTG+TGG | + | chr3_1:56738548-56738567 | None:intergenic | 65.0% | |
| GGAGGAGGGATCTGGTGCGG+AGG | + | chr3_1:56734886-56734905 | None:intergenic | 70.0% | |
| GGGACGTCGGAGGAGGGATC+TGG | + | chr3_1:56734894-56734913 | None:intergenic | 70.0% | |
| CCTAGGAGGGACGTCGGAGG+AGG | + | chr3_1:56734901-56734920 | None:intergenic | 70.0% | |
| CCTCCTCCGACGTCCCTCCT+AGG | - | chr3_1:56734898-56734917 | Msa0364050:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 56734723 | 56738880 | 56734723 | ID=Msa0364050;Name=Msa0364050 |
| chr3_1 | mRNA | 56734723 | 56738880 | 56734723 | ID=Msa0364050-mRNA-1;Parent=Msa0364050;Name=Msa0364050-mRNA-1;_AED=0.01;_eAED=0.01;_QI=111|1|1|1|1|1|5|172|364 |
| chr3_1 | exon | 56734723 | 56735156 | 56734723 | ID=Msa0364050-mRNA-1:exon:10600;Parent=Msa0364050-mRNA-1 |
| chr3_1 | exon | 56735336 | 56735564 | 56735336 | ID=Msa0364050-mRNA-1:exon:10599;Parent=Msa0364050-mRNA-1 |
| chr3_1 | exon | 56736913 | 56737114 | 56736913 | ID=Msa0364050-mRNA-1:exon:10598;Parent=Msa0364050-mRNA-1 |
| chr3_1 | exon | 56737735 | 56738049 | 56737735 | ID=Msa0364050-mRNA-1:exon:10597;Parent=Msa0364050-mRNA-1 |
| chr3_1 | exon | 56738683 | 56738880 | 56738683 | ID=Msa0364050-mRNA-1:exon:10596;Parent=Msa0364050-mRNA-1 |
| chr3_1 | five_prime_UTR | 56738770 | 56738880 | 56738770 | ID=Msa0364050-mRNA-1:five_prime_utr;Parent=Msa0364050-mRNA-1 |
| chr3_1 | CDS | 56738683 | 56738769 | 56738683 | ID=Msa0364050-mRNA-1:cds;Parent=Msa0364050-mRNA-1 |
| chr3_1 | CDS | 56737735 | 56738049 | 56737735 | ID=Msa0364050-mRNA-1:cds;Parent=Msa0364050-mRNA-1 |
| chr3_1 | CDS | 56736913 | 56737114 | 56736913 | ID=Msa0364050-mRNA-1:cds;Parent=Msa0364050-mRNA-1 |
| chr3_1 | CDS | 56735336 | 56735564 | 56735336 | ID=Msa0364050-mRNA-1:cds;Parent=Msa0364050-mRNA-1 |
| chr3_1 | CDS | 56734895 | 56735156 | 56734895 | ID=Msa0364050-mRNA-1:cds;Parent=Msa0364050-mRNA-1 |
| chr3_1 | three_prime_UTR | 56734723 | 56734894 | 56734723 | ID=Msa0364050-mRNA-1:three_prime_utr;Parent=Msa0364050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
