Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436820 | XP_003600465.1 | 99.176 | 364 | 3 | 0 | 1 | 364 | 1 | 364 | 0.0 | 745 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436820 | G7IYA2 | 99.176 | 364 | 3 | 0 | 1 | 364 | 1 | 364 | 0.0 | 745 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011920 | Msa0436820 | -0.803207 | 3.891317e-49 | -8.615850e-47 |
| Msa0364050 | Msa0436820 | 0.974788 | 8.899627e-139 | -8.615850e-47 |
| Msa0436820 | Msa0474570 | 0.807500 | 4.904859e-50 | -8.615850e-47 |
| Msa0436820 | Msa0503640 | 0.951314 | 2.649486e-109 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436820 | MtrunA17_Chr3g0103381 | 99.176 | 364 | 3 | 0 | 1 | 364 | 1 | 364 | 0.0 | 745 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0436820 | AT3G20920.1 | 69.553 | 358 | 97 | 5 | 1 | 349 | 1 | 355 | 0.0 | 511 |
| Msa0436820 | AT3G20920.2 | 69.274 | 358 | 97 | 6 | 1 | 349 | 1 | 354 | 2.71e-180 | 504 |
Find 86 sgRNAs with CRISPR-Local
Find 280 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATATTAATTTAATATATTAT+TGG | 0.198740 | 3_2:-90658065 | None:intergenic |
| CTTTCCTCTTCATCTTTCTT+TGG | 0.213188 | 3_2:-90661481 | None:intergenic |
| TGCGAGAGTTGTTCAGATTT+TGG | 0.213419 | 3_2:+90661458 | Msa0436820:CDS |
| TATATTATTGGACTATTATT+AGG | 0.228700 | 3_2:-90658053 | None:intergenic |
| TCTCCTAGTTTAGCCTTGTC+TGG | 0.298819 | 3_2:+90661825 | Msa0436820:CDS |
| GTAGAGAGAGGATGAGAAAA+AGG | 0.303368 | 3_2:-90659989 | None:intergenic |
| GTAGTAAGAGGTACAATATT+TGG | 0.306952 | 3_2:+90661367 | Msa0436820:intron |
| GCTTCCTCCGCAAGGATGTT+AGG | 0.307824 | 3_2:-90661430 | None:intergenic |
| ATGATAAACAGTATGATTAA+TGG | 0.322992 | 3_2:+90662021 | Msa0436820:CDS |
| ATCTCGAAACCAACTCCTTA+TGG | 0.329067 | 3_2:-90658936 | None:intergenic |
| AAAATCCTTGTCGTCCATTT+CGG | 0.335549 | 3_2:-90661505 | None:intergenic |
| TCCGGAGGTTAAAGACATTC+TGG | 0.339148 | 3_2:+90659029 | Msa0436820:CDS |
| CTTGCCCTTGCAGCTTCATC+AGG | 0.350247 | 3_2:-90661577 | None:intergenic |
| TCCTTATCGTTTCGGCTGTC+AGG | 0.374966 | 3_2:+90662180 | Msa0436820:three_prime_UTR |
| TTTAGCCTTGTCTGGGATGA+TGG | 0.378491 | 3_2:+90661833 | Msa0436820:CDS |
| GGCGTTCTATATATTCTTGT+TGG | 0.381574 | 3_2:+90661388 | Msa0436820:CDS |
| TGATAAACAGTATGATTAAT+GGG | 0.387342 | 3_2:+90662022 | Msa0436820:exon |
| GCCTCACAAGGCAGCACAAC+AGG | 0.389832 | 3_2:+90661897 | Msa0436820:CDS |
| CCTCCTCCGACGTCCCTCCT+AGG | 0.389932 | 3_2:+90658229 | Msa0436820:CDS |
| TTAATACTTTACTCGTGCGC+TGG | 0.415375 | 3_2:+90659963 | Msa0436820:CDS |
| TTCTTGTTGGAAAGCGGATC+TGG | 0.418629 | 3_2:+90661401 | Msa0436820:CDS |
| CTCCTAGTTTAGCCTTGTCT+GGG | 0.426101 | 3_2:+90661826 | Msa0436820:CDS |
| GGGACGTCGGAGGAGGGATC+TGG | 0.432011 | 3_2:-90658222 | None:intergenic |
| TGTGAAGAAGGATGTGTATC+AGG | 0.438572 | 3_2:+90658891 | Msa0436820:CDS |
| ATGAAGAGGAAAGGCCGAAA+TGG | 0.448763 | 3_2:+90661491 | Msa0436820:CDS |
| TGAAATAATAACAGTAAAAG+TGG | 0.457976 | 3_2:+90662120 | Msa0436820:three_prime_UTR |
| GCCTGACAGCCGAAACGATA+AGG | 0.459581 | 3_2:-90662181 | None:intergenic |
| CTTCCTCCGCAAGGATGTTA+GGG | 0.465501 | 3_2:-90661429 | None:intergenic |
| TCAGAAACAAGCTGTGAAGA+AGG | 0.469702 | 3_2:+90658879 | Msa0436820:intron |
| CCTAGGAGGGACGTCGGAGG+AGG | 0.470461 | 3_2:-90658229 | None:intergenic |
| TCCAGAATGTCTTTAACCTC+CGG | 0.479317 | 3_2:-90659030 | None:intergenic |
| TGAGAAAGTGAGAGACCATA+AGG | 0.479734 | 3_2:+90658921 | Msa0436820:CDS |
| TTTCTGGCCTGTGTTAACAT+TGG | 0.480409 | 3_2:+90659899 | Msa0436820:CDS |
| ATTAAGAGCTTGCAGCTATG+AGG | 0.484553 | 3_2:-90659945 | None:intergenic |
| TAAGGAGTTGGTTTCGAGAT+GGG | 0.487533 | 3_2:+90658939 | Msa0436820:CDS |
| GGGAAAATTTCTAAATGAGC+AGG | 0.489313 | 3_2:-90659174 | None:intergenic |
| GGTTAAAGACATTCTGGAAT+CGG | 0.497490 | 3_2:+90659035 | Msa0436820:CDS |
| GCCTTGTGAGGCAGCATCAG+TGG | 0.498248 | 3_2:-90661886 | None:intergenic |
| ACAAGGCAGCACAACAGGAC+CGG | 0.505921 | 3_2:+90661902 | Msa0436820:CDS |
| CTCCTCCGACGTCCCTCCTA+GGG | 0.510314 | 3_2:+90658230 | Msa0436820:CDS |
| TCCTGTTGTGCTGCCTTGTG+AGG | 0.527738 | 3_2:-90661898 | None:intergenic |
| TACTGTTCATATTACTGTTG+AGG | 0.529799 | 3_2:+90661545 | Msa0436820:CDS |
| TAATACTTTACTCGTGCGCT+GGG | 0.530058 | 3_2:+90659964 | Msa0436820:CDS |
| TCGGTTGGAGCTTCATGCTC+CGG | 0.530823 | 3_2:-90661921 | None:intergenic |
| TCATTGATGATGTTCTTGAA+TGG | 0.531192 | 3_2:+90661802 | Msa0436820:CDS |
| AGTGAGAGACCATAAGGAGT+TGG | 0.536744 | 3_2:+90658927 | Msa0436820:CDS |
| TCCACTGATGCTGCCTCACA+AGG | 0.554001 | 3_2:+90661885 | Msa0436820:CDS |
| CTGATGAAGCTGCAAGGGCA+AGG | 0.555464 | 3_2:+90661578 | Msa0436820:CDS |
| TATATATTCTTGTTGGAAAG+CGG | 0.556470 | 3_2:+90661395 | Msa0436820:CDS |
| TTGTAAAACGACATCCACTT+TGG | 0.558359 | 3_2:+90659859 | Msa0436820:CDS |
| TTAAGAGCTTGCAGCTATGA+GGG | 0.560242 | 3_2:-90659944 | None:intergenic |
| ATTGAAAACATAGAGGATGT+AGG | 0.560982 | 3_2:+90661993 | Msa0436820:CDS |
| AAGACATTCTGGAATCGGAC+AGG | 0.563072 | 3_2:+90659040 | Msa0436820:CDS |
| CTTGCAGCTATGAGGGTACA+CGG | 0.568526 | 3_2:-90659937 | None:intergenic |
| GATAGGAGTGTCTGCCAAAG+TGG | 0.568616 | 3_2:-90659873 | None:intergenic |
| ATCCCAGACAAGGCTAAACT+AGG | 0.569530 | 3_2:-90661828 | None:intergenic |
| AGAGAGAGAAAACATAACAT+AGG | 0.569919 | 3_2:+90658129 | Msa0436820:five_prime_UTR |
| CTAGGAGGGACGTCGGAGGA+GGG | 0.570443 | 3_2:-90658228 | None:intergenic |
| TTGGCCAAAGAAAGATGAAG+AGG | 0.571861 | 3_2:+90661477 | Msa0436820:CDS |
| ATAAGGAGTTGGTTTCGAGA+TGG | 0.575545 | 3_2:+90658938 | Msa0436820:CDS |
| TGCACCTGATGAAGCTGCAA+GGG | 0.580240 | 3_2:+90661573 | Msa0436820:CDS |
| CAGAATGTGACTAATGCCAC+AGG | 0.580423 | 3_2:+90661861 | Msa0436820:CDS |
| TTTAGTTCGCTGTGATCGTG+TGG | 0.588939 | 3_2:+90659110 | Msa0436820:CDS |
| GCAGTGTTGCTTCCTCCGCA+AGG | 0.589718 | 3_2:-90661438 | None:intergenic |
| ATGCACCTGATGAAGCTGCA+AGG | 0.597119 | 3_2:+90661572 | Msa0436820:CDS |
| GATCTGGTGCGGAGGAGCGT+CGG | 0.599719 | 3_2:-90658206 | None:intergenic |
| AGAAACCCTAGGAGGGACGT+CGG | 0.603935 | 3_2:-90658235 | None:intergenic |
| AGAAGTCATTGAAAACATAG+AGG | 0.607410 | 3_2:+90661986 | Msa0436820:CDS |
| GGAGGAGGGATCTGGTGCGG+AGG | 0.612395 | 3_2:-90658214 | None:intergenic |
| GTCGGAGGAGGGATCTGGTG+CGG | 0.613470 | 3_2:-90658217 | None:intergenic |
| GAAGAAATCATCGGGAGGCG+CGG | 0.613727 | 3_2:+90658167 | Msa0436820:CDS |
| CAAAGAAAGATGAAGAGGAA+AGG | 0.627979 | 3_2:+90661482 | Msa0436820:CDS |
| GAAGCTCCAACCGATAGTAA+TGG | 0.629679 | 3_2:+90661930 | Msa0436820:CDS |
| AACCCTAGGAGGGACGTCGG+AGG | 0.635303 | 3_2:-90658232 | None:intergenic |
| CAAATAGCCAATGTTAACAC+AGG | 0.636543 | 3_2:-90659906 | None:intergenic |
| TTTGTCCATCATCCCAGACA+AGG | 0.641989 | 3_2:-90661838 | None:intergenic |
| GAGAGAGAGAAACCCTAGGA+GGG | 0.654726 | 3_2:-90658242 | None:intergenic |
| GGCAGCATCAGTGGACCCTG+TGG | 0.656336 | 3_2:-90661877 | None:intergenic |
| ACTTACTCAACAGTAGAGAG+AGG | 0.660007 | 3_2:-90660001 | None:intergenic |
| AAAGGCCGAAATGGACGACA+AGG | 0.665317 | 3_2:+90661500 | Msa0436820:CDS |
| TTGCAGCTATGAGGGTACAC+GGG | 0.668997 | 3_2:-90659936 | None:intergenic |
| TTTCCCTAACATCCTTGCGG+AGG | 0.670145 | 3_2:+90661426 | Msa0436820:CDS |
| GGAGAGAGAGAAACCCTAGG+AGG | 0.684963 | 3_2:-90658243 | None:intergenic |
| GGACAGGAGTTTAGAAACAG+AGG | 0.691778 | 3_2:+90659056 | Msa0436820:CDS |
| AAAATGAAGAAATCATCGGG+AGG | 0.704093 | 3_2:+90658162 | Msa0436820:exon |
| AGAATGTGACTAATGCCACA+GGG | 0.741132 | 3_2:+90661862 | Msa0436820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTAATTTAATATATTAT+TGG | - | chr3_2:90658068-90658087 | None:intergenic | 0.0% |
| !! | TGTAAAATTGTAAATTATTT+AGG | + | chr3_2:90658674-90658693 | Msa0436820:intron | 10.0% |
| !! | TATATAAATATATATCCTTA+TGG | + | chr3_2:90660074-90660093 | Msa0436820:intron | 10.0% |
| !! | TATATTATTGGACTATTATT+AGG | - | chr3_2:90658056-90658075 | None:intergenic | 15.0% |
| !!! | TCTGAATTTGTTTATTTTTA+TGG | + | chr3_2:90658777-90658796 | Msa0436820:intron | 15.0% |
| !!! | CTGAATTTGTTTATTTTTAT+GGG | + | chr3_2:90658778-90658797 | Msa0436820:intron | 15.0% |
| !! | TTGAATTCAAATTGATTATT+CGG | + | chr3_2:90659557-90659576 | Msa0436820:intron | 15.0% |
| !!! | AATTTCTAAAATTATTGTCA+TGG | - | chr3_2:90660415-90660434 | None:intergenic | 15.0% |
| !! | CAACACAAATATTAATATTT+AGG | - | chr3_2:90660671-90660690 | None:intergenic | 15.0% |
| !! | CTAAATATTAATATTTGTGT+TGG | + | chr3_2:90660669-90660688 | Msa0436820:intron | 15.0% |
| !!! | TGATTTTTTCTCAATAATAA+CGG | + | chr3_2:90660739-90660758 | Msa0436820:intron | 15.0% |
| !! | ACAACTAATATTTAAATACT+TGG | - | chr3_2:90661279-90661298 | None:intergenic | 15.0% |
| !! | ATGTTAAAAAAATATTCATG+AGG | - | chr3_2:90661346-90661365 | None:intergenic | 15.0% |
| !! | TAAATTCATTCATAAAGTTT+AGG | - | chr3_2:90661609-90661628 | None:intergenic | 15.0% |
| !! | AACTTTATGAATGAATTTAT+AGG | + | chr3_2:90661610-90661629 | Msa0436820:intron | 15.0% |
| !!! | ACTATTATTAGGTAGATTTT+AGG | - | chr3_2:90658045-90658064 | None:intergenic | 20.0% |
| !! | GAAAAAAATGAAGAAATCAT+CGG | + | chr3_2:90658158-90658177 | Msa0436820:exon | 20.0% |
| !! | AAAAAAATGAAGAAATCATC+GGG | + | chr3_2:90658159-90658178 | Msa0436820:exon | 20.0% |
| !!! | TTTTAAGCTGCTTTTTTAAT+TGG | + | chr3_2:90658571-90658590 | Msa0436820:intron | 20.0% |
| !!! | TTTAAGCTGCTTTTTTAATT+GGG | + | chr3_2:90658572-90658591 | Msa0436820:intron | 20.0% |
| !! | AAAGGTTAAGCAAATTAAAA+TGG | + | chr3_2:90659333-90659352 | Msa0436820:intron | 20.0% |
| !!! | TTTTCTATGTTCGAAATTTA+TGG | + | chr3_2:90659360-90659379 | Msa0436820:intron | 20.0% |
| !! | ATAAAACCAAAAGAATAACA+CGG | - | chr3_2:90659500-90659519 | None:intergenic | 20.0% |
| !!! | CAATTTTCTCATATACAATA+TGG | - | chr3_2:90659618-90659637 | None:intergenic | 20.0% |
| !!! | TCTTTTCTATATTGTTTGAT+TGG | + | chr3_2:90660027-90660046 | Msa0436820:intron | 20.0% |
| !! | TGAATATATGTAGTTATGAA+TGG | + | chr3_2:90660171-90660190 | Msa0436820:intron | 20.0% |
| !!! | CTTACACTGTTATTTTTAAT+AGG | + | chr3_2:90660283-90660302 | Msa0436820:intron | 20.0% |
| !! | ATCTTCAATAAACATCTAAT+TGG | - | chr3_2:90660992-90661011 | None:intergenic | 20.0% |
| !! | TAATGAAAATACATACTACA+AGG | - | chr3_2:90661085-90661104 | None:intergenic | 20.0% |
| !! | AAAATTATAGAACAAGGTAA+AGG | - | chr3_2:90661163-90661182 | None:intergenic | 20.0% |
| !! | CAAGTTAAAATTATAGAACA+AGG | - | chr3_2:90661169-90661188 | None:intergenic | 20.0% |
| !!! | TTTTTTAACATTGTAGTAAG+AGG | + | chr3_2:90661355-90661374 | Msa0436820:intron | 20.0% |
| !! | ATGATAAACAGTATGATTAA+TGG | + | chr3_2:90662021-90662040 | Msa0436820:CDS | 20.0% |
| !! | TGATAAACAGTATGATTAAT+GGG | + | chr3_2:90662022-90662041 | Msa0436820:exon | 20.0% |
| !!! | ACTTTTACACTCAAATAAAA+AGG | - | chr3_2:90662092-90662111 | None:intergenic | 20.0% |
| !! | TGAAATAATAACAGTAAAAG+TGG | + | chr3_2:90662120-90662139 | Msa0436820:three_prime_UTR | 20.0% |
| !!! | GGAAAACATTTTTCTTAATA+AGG | - | chr3_2:90662163-90662182 | None:intergenic | 20.0% |
| ! | ATGGAAAATTGGAAAAGAAT+TGG | - | chr3_2:90658294-90658313 | None:intergenic | 25.0% |
| ! | TCTAAGAATTTGAGAAGAAA+AGG | - | chr3_2:90658338-90658357 | None:intergenic | 25.0% |
| ! | TTAATTGGGTAACTTGAAAT+TGG | + | chr3_2:90658586-90658605 | Msa0436820:intron | 25.0% |
| !!! | TGTTGTTGTTATGATGTTTT+TGG | + | chr3_2:90658853-90658872 | Msa0436820:intron | 25.0% |
| ! | AGCAAGAAAAATTACTTACA+GGG | - | chr3_2:90659197-90659216 | None:intergenic | 25.0% |
| !! | ACAATCTGATTATCTTTTTC+AGG | + | chr3_2:90659794-90659813 | Msa0436820:intron | 25.0% |
| !!! | TGCAAAAAAAGCATCATTTT+CGG | - | chr3_2:90659832-90659851 | None:intergenic | 25.0% |
| !!! | AAAATGATGCTTTTTTTGCA+TGG | + | chr3_2:90659832-90659851 | Msa0436820:CDS | 25.0% |
| ! | TATACATAAGTGAAGAAACT+AGG | - | chr3_2:90660058-90660077 | None:intergenic | 25.0% |
| ! | TTCATCAGATAATGAATACA+TGG | - | chr3_2:90660155-90660174 | None:intergenic | 25.0% |
| ! | ATATATGTAGTTATGAATGG+AGG | + | chr3_2:90660174-90660193 | Msa0436820:intron | 25.0% |
| ! | TGATAATATACATGGTAGAT+TGG | - | chr3_2:90660233-90660252 | None:intergenic | 25.0% |
| ! | GATATGGATGATAATATACA+TGG | - | chr3_2:90660241-90660260 | None:intergenic | 25.0% |
| !! | AATTCAATGCTGTTTAATAG+GGG | - | chr3_2:90660355-90660374 | None:intergenic | 25.0% |
| !! | CAATTCAATGCTGTTTAATA+GGG | - | chr3_2:90660356-90660375 | None:intergenic | 25.0% |
| !! | TCAATTCAATGCTGTTTAAT+AGG | - | chr3_2:90660357-90660376 | None:intergenic | 25.0% |
| ! | CTTCAAAATCTATGGAAAAA+TGG | - | chr3_2:90660384-90660403 | None:intergenic | 25.0% |
| !! | CATTTTTCCATAGATTTTGA+AGG | + | chr3_2:90660382-90660401 | Msa0436820:intron | 25.0% |
| !! | GAATATTAGTTTGATCTGTA+TGG | + | chr3_2:90660462-90660481 | Msa0436820:intron | 25.0% |
| ! | TGTTTAATTGTTTATCCATG+TGG | + | chr3_2:90660485-90660504 | Msa0436820:intron | 25.0% |
| ! | GTTTAATTGTTTATCCATGT+GGG | + | chr3_2:90660486-90660505 | Msa0436820:intron | 25.0% |
| ! | ACACAAATCAGAATAATCTA+GGG | - | chr3_2:90660549-90660568 | None:intergenic | 25.0% |
| ! | ATTAATATTTGTGTTGGAAG+AGG | + | chr3_2:90660675-90660694 | Msa0436820:intron | 25.0% |
| ! | TTAATATTTGTGTTGGAAGA+GGG | + | chr3_2:90660676-90660695 | Msa0436820:intron | 25.0% |
| ! | GTAATCCAAATAATTCAAGA+AGG | - | chr3_2:90660848-90660867 | None:intergenic | 25.0% |
| !! | ATGGATACTGTGTATTTTAT+AGG | - | chr3_2:90660886-90660905 | None:intergenic | 25.0% |
| ! | CAAAATAAAGACACATGTTA+TGG | - | chr3_2:90660912-90660931 | None:intergenic | 25.0% |
| !!! | TCTTTATTTTGTGTGCTTTT+GGG | + | chr3_2:90660921-90660940 | Msa0436820:intron | 25.0% |
| !! | CATTATTTCCGTATCTATTT+TGG | + | chr3_2:90661100-90661119 | Msa0436820:intron | 25.0% |
| !!! | AGTCCAAAAGTATCATATAT+GGG | - | chr3_2:90661140-90661159 | None:intergenic | 25.0% |
| ! | ATGAAATTAACATTCCAGAA+GGG | - | chr3_2:90661195-90661214 | None:intergenic | 25.0% |
| ! | TATGAAATTAACATTCCAGA+AGG | - | chr3_2:90661196-90661215 | None:intergenic | 25.0% |
| !! | TATTTAAATACTTGGTAGCT+AGG | - | chr3_2:90661271-90661290 | None:intergenic | 25.0% |
| ! | TATATATTCTTGTTGGAAAG+CGG | + | chr3_2:90661395-90661414 | Msa0436820:CDS | 25.0% |
| ! | TCAGAGCTTAAATTCTTATT+TGG | + | chr3_2:90661670-90661689 | Msa0436820:intron | 25.0% |
| !! | AGCTTAAATTCTTATTTGGT+TGG | + | chr3_2:90661674-90661693 | Msa0436820:intron | 25.0% |
| !!! | AGTTTTTTCACCATTACTAT+CGG | - | chr3_2:90661943-90661962 | None:intergenic | 25.0% |
| ! | TAATGGTGAAAAAACTTTCT+CGG | + | chr3_2:90661947-90661966 | Msa0436820:CDS | 25.0% |
| !! | AAATGTTTTCCTTATCGTTT+CGG | + | chr3_2:90662172-90662191 | Msa0436820:three_prime_UTR | 25.0% |
| AGAGAGAGAAAACATAACAT+AGG | + | chr3_2:90658129-90658148 | Msa0436820:five_prime_UTR | 30.0% | |
| !! | AGAAATTGGTGATGGAAAAT+TGG | - | chr3_2:90658305-90658324 | None:intergenic | 30.0% |
| !! | ATTTGAGAAGAAAAGGCATT+GGG | - | chr3_2:90658331-90658350 | None:intergenic | 30.0% |
| ! | AATTTGAGAAGAAAAGGCAT+TGG | - | chr3_2:90658332-90658351 | None:intergenic | 30.0% |
| ! | TCTTTCAGTATTTTGCTGAT+TGG | + | chr3_2:90658404-90658423 | Msa0436820:intron | 30.0% |
| !!! | ATCCTTTTGCTATTCTAGAT+TGG | + | chr3_2:90658528-90658547 | Msa0436820:intron | 30.0% |
| ! | ATCCAATCTAGAATAGCAAA+AGG | - | chr3_2:90658533-90658552 | None:intergenic | 30.0% |
| ACAAAATGATCATGTGCAAA+GGG | - | chr3_2:90658738-90658757 | None:intergenic | 30.0% | |
| TTTGACATGCAAAAGTTGTT+TGG | + | chr3_2:90658815-90658834 | Msa0436820:intron | 30.0% | |
| TTGACATGCAAAAGTTGTTT+GGG | + | chr3_2:90658816-90658835 | Msa0436820:intron | 30.0% | |
| CAGCAAGAAAAATTACTTAC+AGG | - | chr3_2:90659198-90659217 | None:intergenic | 30.0% | |
| AACATATATGTGTTTGCATG+TGG | + | chr3_2:90659258-90659277 | Msa0436820:intron | 30.0% | |
| AAATTTATGGTCACTACCAT+TGG | + | chr3_2:90659373-90659392 | Msa0436820:intron | 30.0% | |
| GATCCAATGAACAACATTAT+TGG | + | chr3_2:90659456-90659475 | Msa0436820:intron | 30.0% | |
| !!! | CTTTTGGTTTTATCTTGTGT+AGG | + | chr3_2:90659507-90659526 | Msa0436820:intron | 30.0% |
| CACATAGATATCACAAAAGT+AGG | - | chr3_2:90659586-90659605 | None:intergenic | 30.0% | |
| !! | GTTTCAGTGATTAGTTTGTT+TGG | + | chr3_2:90659764-90659783 | Msa0436820:intron | 30.0% |
| !!! | AAAAGCATCATTTTCGGAAA+AGG | - | chr3_2:90659826-90659845 | None:intergenic | 30.0% |
| AACATTTGTAACAGTCCATA+AGG | - | chr3_2:90660092-90660111 | None:intergenic | 30.0% | |
| !! | GCCAATTTTGTTATATGTTG+CGG | + | chr3_2:90660122-90660141 | Msa0436820:intron | 30.0% |
| ACCGCAACATATAACAAAAT+TGG | - | chr3_2:90660126-90660145 | None:intergenic | 30.0% | |
| TTCAAAATCTCCTAATGTAC+AGG | - | chr3_2:90660209-90660228 | None:intergenic | 30.0% | |
| TCCATATCAGTTATAACAGA+TGG | + | chr3_2:90660253-90660272 | Msa0436820:intron | 30.0% | |
| CCATATCAGTTATAACAGAT+GGG | + | chr3_2:90660254-90660273 | Msa0436820:intron | 30.0% | |
| AGTAAACCAATAGACAGTTT+GGG | - | chr3_2:90660310-90660329 | None:intergenic | 30.0% | |
| AAGTAAACCAATAGACAGTT+TGG | - | chr3_2:90660311-90660330 | None:intergenic | 30.0% | |
| ! | TTAATAGGGGTTTAGAATAC+AGG | - | chr3_2:90660342-90660361 | None:intergenic | 30.0% |
| CAAAATCTATGGAAAAATGG+CGG | - | chr3_2:90660381-90660400 | None:intergenic | 30.0% | |
| TAGATTGCCTTCAAAATCTA+TGG | - | chr3_2:90660392-90660411 | None:intergenic | 30.0% | |
| ! | AGAAATTTTGCACTTAGATG+AGG | + | chr3_2:90660428-90660447 | Msa0436820:intron | 30.0% |
| CACAAATCAGAATAATCTAG+GGG | - | chr3_2:90660548-90660567 | None:intergenic | 30.0% | |
| GACACAAATCAGAATAATCT+AGG | - | chr3_2:90660550-90660569 | None:intergenic | 30.0% | |
| TTTGAAAATGCAAGGTTGTT+TGG | + | chr3_2:90660636-90660655 | Msa0436820:intron | 30.0% | |
| AAGACACATGTTATGGAATA+TGG | - | chr3_2:90660905-90660924 | None:intergenic | 30.0% | |
| !!! | GTCTTTATTTTGTGTGCTTT+TGG | + | chr3_2:90660920-90660939 | Msa0436820:intron | 30.0% |
| TAGTCCAATATGTGTGAAAA+AGG | + | chr3_2:90661033-90661052 | Msa0436820:intron | 30.0% | |
| !!! | ATTTCCGTATCTATTTTGGT+AGG | + | chr3_2:90661104-90661123 | Msa0436820:intron | 30.0% |
| CTAACCTACCAAAATAGATA+CGG | - | chr3_2:90661111-90661130 | None:intergenic | 30.0% | |
| ! | TAGCCCATATATGATACTTT+TGG | + | chr3_2:90661134-90661153 | Msa0436820:intron | 30.0% |
| !! | GAGTCCAAAAGTATCATATA+TGG | - | chr3_2:90661141-90661160 | None:intergenic | 30.0% |
| !!! | ATTTTAACTTGTATCCCTTC+TGG | + | chr3_2:90661178-90661197 | Msa0436820:intron | 30.0% |
| TTTCATAACATTTCCCCTAA+AGG | + | chr3_2:90661209-90661228 | Msa0436820:intron | 30.0% | |
| TTCATAACATTTCCCCTAAA+GGG | + | chr3_2:90661210-90661229 | Msa0436820:intron | 30.0% | |
| ! | GTAGTAAGAGGTACAATATT+TGG | + | chr3_2:90661367-90661386 | Msa0436820:intron | 30.0% |
| TACTGTTCATATTACTGTTG+AGG | + | chr3_2:90661545-90661564 | Msa0436820:CDS | 30.0% | |
| ACCAAAGCAACAAGTTATAA+CGG | - | chr3_2:90661749-90661768 | None:intergenic | 30.0% | |
| !! | TCATTGATGATGTTCTTGAA+TGG | + | chr3_2:90661802-90661821 | Msa0436820:CDS | 30.0% |
| AGAAGTCATTGAAAACATAG+AGG | + | chr3_2:90661986-90662005 | Msa0436820:CDS | 30.0% | |
| ATTGAAAACATAGAGGATGT+AGG | + | chr3_2:90661993-90662012 | Msa0436820:CDS | 30.0% | |
| ! | CTAGTCACTAGATGTATTTT+AGG | - | chr3_2:90662058-90662077 | None:intergenic | 30.0% |
| AAAATGAAGAAATCATCGGG+AGG | + | chr3_2:90658162-90658181 | Msa0436820:exon | 35.0% | |
| CAAAATGATCATGTGCAAAG+GGG | - | chr3_2:90658737-90658756 | None:intergenic | 35.0% | |
| CACAAAATGATCATGTGCAA+AGG | - | chr3_2:90658739-90658758 | None:intergenic | 35.0% | |
| GAGCTTCTTGAAAAATCATC+CGG | + | chr3_2:90659011-90659030 | Msa0436820:CDS | 35.0% | |
| !! | GGTTAAAGACATTCTGGAAT+CGG | + | chr3_2:90659035-90659054 | Msa0436820:CDS | 35.0% |
| GGGAAAATTTCTAAATGAGC+AGG | - | chr3_2:90659177-90659196 | None:intergenic | 35.0% | |
| GTAGTTATTCCTCAGTTCAA+AGG | + | chr3_2:90659315-90659334 | Msa0436820:intron | 35.0% | |
| TTTGCTTAACCTTTGAACTG+AGG | - | chr3_2:90659327-90659346 | None:intergenic | 35.0% | |
| GGAATAACATCAAAGACCAA+TGG | - | chr3_2:90659392-90659411 | None:intergenic | 35.0% | |
| ATGTTGTTCATTGGATCAAC+AGG | - | chr3_2:90659453-90659472 | None:intergenic | 35.0% | |
| TGGCCAATAATGTTGTTCAT+TGG | - | chr3_2:90659462-90659481 | None:intergenic | 35.0% | |
| TTGTAAAACGACATCCACTT+TGG | + | chr3_2:90659859-90659878 | Msa0436820:CDS | 35.0% | |
| !!! | AGACACTCCTATCTTTTTTC+TGG | + | chr3_2:90659883-90659902 | Msa0436820:CDS | 35.0% |
| CAAATAGCCAATGTTAACAC+AGG | - | chr3_2:90659909-90659928 | None:intergenic | 35.0% | |
| GAGAAAAAAGCCTGTACATT+AGG | + | chr3_2:90660196-90660215 | Msa0436820:intron | 35.0% | |
| CCCATCTGTTATAACTGATA+TGG | - | chr3_2:90660257-90660276 | None:intergenic | 35.0% | |
| TATTAGTATACTCTCCCACA+TGG | - | chr3_2:90660503-90660522 | None:intergenic | 35.0% | |
| !!! | GTGTTTCTGGTAGTTTTCTA+GGG | + | chr3_2:90660602-90660621 | Msa0436820:intron | 35.0% |
| !!! | TGTTTCTGGTAGTTTTCTAG+GGG | + | chr3_2:90660603-90660622 | Msa0436820:intron | 35.0% |
| !!! | TGCATGGTTTTGAAAATGCA+AGG | + | chr3_2:90660628-90660647 | Msa0436820:intron | 35.0% |
| GCATGCATCTTTCAGTAAAA+GGG | - | chr3_2:90660826-90660845 | None:intergenic | 35.0% | |
| GCATGCCTTCTTGAATTATT+TGG | + | chr3_2:90660840-90660859 | Msa0436820:intron | 35.0% | |
| TTGGGTTTATTCATGCTTGA+TGG | + | chr3_2:90660939-90660958 | Msa0436820:intron | 35.0% | |
| !! | AGAGCCTTTTTCACACATAT+TGG | - | chr3_2:90661040-90661059 | None:intergenic | 35.0% |
| TTTATTCCTTGAGCCCTTTA+GGG | - | chr3_2:90661226-90661245 | None:intergenic | 35.0% | |
| ! | TTTTATTCCTTGAGCCCTTT+AGG | - | chr3_2:90661227-90661246 | None:intergenic | 35.0% |
| ! | GATAAATGCACCCTTTTCTT+AGG | + | chr3_2:90661320-90661339 | Msa0436820:intron | 35.0% |
| ATTCATGAGGCCTAAGAAAA+GGG | - | chr3_2:90661333-90661352 | None:intergenic | 35.0% | |
| TATTCATGAGGCCTAAGAAA+AGG | - | chr3_2:90661334-90661353 | None:intergenic | 35.0% | |
| GGCGTTCTATATATTCTTGT+TGG | + | chr3_2:90661388-90661407 | Msa0436820:CDS | 35.0% | |
| CTTTCCTCTTCATCTTTCTT+TGG | - | chr3_2:90661484-90661503 | None:intergenic | 35.0% | |
| CAAAGAAAGATGAAGAGGAA+AGG | + | chr3_2:90661482-90661501 | Msa0436820:CDS | 35.0% | |
| AAAATCCTTGTCGTCCATTT+CGG | - | chr3_2:90661508-90661527 | None:intergenic | 35.0% | |
| ! | CAAATTGTTTTCCCTTCATG+GGG | - | chr3_2:90661710-90661729 | None:intergenic | 35.0% |
| ! | GCAAATTGTTTTCCCTTCAT+GGG | - | chr3_2:90661711-90661730 | None:intergenic | 35.0% |
| ! | TGCAAATTGTTTTCCCTTCA+TGG | - | chr3_2:90661712-90661731 | None:intergenic | 35.0% |
| ! | TTTTCACCATTACTATCGGT+TGG | - | chr3_2:90661939-90661958 | None:intergenic | 35.0% |
| AAACCCTAGAGAGAGAAAGA+GGG | - | chr3_2:90658271-90658290 | None:intergenic | 40.0% | |
| TTGGGTGTAGAAATTGGTGA+TGG | - | chr3_2:90658313-90658332 | None:intergenic | 40.0% | |
| !! | AAGGCATTGGGTGTAGAAAT+TGG | - | chr3_2:90658319-90658338 | None:intergenic | 40.0% |
| CATGTGCAAAGGGGATATAA+AGG | - | chr3_2:90658728-90658747 | None:intergenic | 40.0% | |
| TCAGAAACAAGCTGTGAAGA+AGG | + | chr3_2:90658879-90658898 | Msa0436820:intron | 40.0% | |
| TGTGAAGAAGGATGTGTATC+AGG | + | chr3_2:90658891-90658910 | Msa0436820:CDS | 40.0% | |
| TGAGAAAGTGAGAGACCATA+AGG | + | chr3_2:90658921-90658940 | Msa0436820:CDS | 40.0% | |
| ATCTCGAAACCAACTCCTTA+TGG | - | chr3_2:90658939-90658958 | None:intergenic | 40.0% | |
| ! | ATAAGGAGTTGGTTTCGAGA+TGG | + | chr3_2:90658938-90658957 | Msa0436820:CDS | 40.0% |
| ! | TAAGGAGTTGGTTTCGAGAT+GGG | + | chr3_2:90658939-90658958 | Msa0436820:CDS | 40.0% |
| !! | ACACGTGTCGAGTATTTTAG+AGG | + | chr3_2:90658976-90658995 | Msa0436820:CDS | 40.0% |
| !! | CACGTGTCGAGTATTTTAGA+GGG | + | chr3_2:90658977-90658996 | Msa0436820:CDS | 40.0% |
| !! | TGTCGAGTATTTTAGAGGGA+AGG | + | chr3_2:90658981-90659000 | Msa0436820:CDS | 40.0% |
| CTTCTTGAAAAATCATCCGG+AGG | + | chr3_2:90659014-90659033 | Msa0436820:CDS | 40.0% | |
| TCCAGAATGTCTTTAACCTC+CGG | - | chr3_2:90659033-90659052 | None:intergenic | 40.0% | |
| TGGTAAAAACTCTTCGTCCT+GGG | + | chr3_2:90659130-90659149 | Msa0436820:CDS | 40.0% | |
| GGAAGAAAAAGCTGTCTACT+TGG | + | chr3_2:90659151-90659170 | Msa0436820:CDS | 40.0% | |
| ACACAGGCCAGAAAAAAGAT+AGG | - | chr3_2:90659893-90659912 | None:intergenic | 40.0% | |
| ! | TTTCTGGCCTGTGTTAACAT+TGG | + | chr3_2:90659899-90659918 | Msa0436820:CDS | 40.0% |
| TTAAGAGCTTGCAGCTATGA+GGG | - | chr3_2:90659947-90659966 | None:intergenic | 40.0% | |
| ATTAAGAGCTTGCAGCTATG+AGG | - | chr3_2:90659948-90659967 | None:intergenic | 40.0% | |
| TTAATACTTTACTCGTGCGC+TGG | + | chr3_2:90659963-90659982 | Msa0436820:CDS | 40.0% | |
| TAATACTTTACTCGTGCGCT+GGG | + | chr3_2:90659964-90659983 | Msa0436820:CDS | 40.0% | |
| GTAGAGAGAGGATGAGAAAA+AGG | - | chr3_2:90659992-90660011 | None:intergenic | 40.0% | |
| ACTTACTCAACAGTAGAGAG+AGG | - | chr3_2:90660004-90660023 | None:intergenic | 40.0% | |
| ATAGGACCCAAACTGTCTAT+TGG | + | chr3_2:90660301-90660320 | Msa0436820:intron | 40.0% | |
| TTTGCACTTAGATGAGGAAG+AGG | + | chr3_2:90660434-90660453 | Msa0436820:intron | 40.0% | |
| !!! | GGTGTTTCTGGTAGTTTTCT+AGG | + | chr3_2:90660601-90660620 | Msa0436820:intron | 40.0% |
| !! | TAGTTTTCTAGGGGTTTGCA+TGG | + | chr3_2:90660612-90660631 | Msa0436820:intron | 40.0% |
| GGCATGCATCTTTCAGTAAA+AGG | - | chr3_2:90660827-90660846 | None:intergenic | 40.0% | |
| TTATTCCTTGAGCCCTTTAG+GGG | - | chr3_2:90661225-90661244 | None:intergenic | 40.0% | |
| ! | GTTTTTCCCTAACATCCTTG+CGG | + | chr3_2:90661423-90661442 | Msa0436820:CDS | 40.0% |
| ! | TGCGAGAGTTGTTCAGATTT+TGG | + | chr3_2:90661458-90661477 | Msa0436820:CDS | 40.0% |
| TTGGCCAAAGAAAGATGAAG+AGG | + | chr3_2:90661477-90661496 | Msa0436820:CDS | 40.0% | |
| ! | GACAAGGATTTTCTATGCTG+TGG | + | chr3_2:90661516-90661535 | Msa0436820:CDS | 40.0% |
| ! | AAGGATTTTCTATGCTGTGG+TGG | + | chr3_2:90661519-90661538 | Msa0436820:CDS | 40.0% |
| !! | GCCGTTATAACTTGTTGCTT+TGG | + | chr3_2:90661745-90661764 | Msa0436820:intron | 40.0% |
| AGAATGTGACTAATGCCACA+GGG | + | chr3_2:90661862-90661881 | Msa0436820:CDS | 40.0% | |
| GAAACCCTAGAGAGAGAAAG+AGG | - | chr3_2:90658272-90658291 | None:intergenic | 45.0% | |
| AGTGAGAGACCATAAGGAGT+TGG | + | chr3_2:90658927-90658946 | Msa0436820:CDS | 45.0% | |
| !!! | TTCGAGATGGGCTGTTTTAC+AGG | + | chr3_2:90658951-90658970 | Msa0436820:CDS | 45.0% |
| TCCGGAGGTTAAAGACATTC+TGG | + | chr3_2:90659029-90659048 | Msa0436820:CDS | 45.0% | |
| !! | AAGACATTCTGGAATCGGAC+AGG | + | chr3_2:90659040-90659059 | Msa0436820:CDS | 45.0% |
| GGACAGGAGTTTAGAAACAG+AGG | + | chr3_2:90659056-90659075 | Msa0436820:CDS | 45.0% | |
| ! | TTTAGTTCGCTGTGATCGTG+TGG | + | chr3_2:90659110-90659129 | Msa0436820:CDS | 45.0% |
| GTGGTAAAAACTCTTCGTCC+TGG | + | chr3_2:90659129-90659148 | Msa0436820:CDS | 45.0% | |
| !! | GTAGACAGCTTTTTCTTCCC+AGG | - | chr3_2:90659150-90659169 | None:intergenic | 45.0% |
| TGTTATTCCTCTGCCTGACA+TGG | + | chr3_2:90659403-90659422 | Msa0436820:intron | 45.0% | |
| GTTATTCCTCTGCCTGACAT+GGG | + | chr3_2:90659404-90659423 | Msa0436820:intron | 45.0% | |
| ! | ATTGGCCACCTTTTTGTGTG+TGG | + | chr3_2:90659474-90659493 | Msa0436820:intron | 45.0% |
| TAACACGGCCACACACAAAA+AGG | - | chr3_2:90659485-90659504 | None:intergenic | 45.0% | |
| !! | GTGTGGCCGTGTTATTCTTT+TGG | + | chr3_2:90659491-90659510 | Msa0436820:intron | 45.0% |
| ! | AGGGGTTTAGAATACAGGTG+TGG | - | chr3_2:90660337-90660356 | None:intergenic | 45.0% |
| TCTAGGGGAATCATGAAGAC+AGG | - | chr3_2:90660533-90660552 | None:intergenic | 45.0% | |
| AACCATCTCCAGTTCATGGA+AGG | - | chr3_2:90660576-90660595 | None:intergenic | 45.0% | |
| GCATAACCATCTCCAGTTCA+TGG | - | chr3_2:90660580-90660599 | None:intergenic | 45.0% | |
| TGAACTGGAGATGGTTATGC+TGG | + | chr3_2:90660580-90660599 | Msa0436820:intron | 45.0% | |
| GATGGTTATGCTGGTGTTTC+TGG | + | chr3_2:90660589-90660608 | Msa0436820:intron | 45.0% | |
| TTCTTGTTGGAAAGCGGATC+TGG | + | chr3_2:90661401-90661420 | Msa0436820:CDS | 45.0% | |
| ATGAAGAGGAAAGGCCGAAA+TGG | + | chr3_2:90661491-90661510 | Msa0436820:CDS | 45.0% | |
| !! | TGTTGCTTTGGTCTTTGTGC+AGG | + | chr3_2:90661757-90661776 | Msa0436820:intron | 45.0% |
| !! | TCTCCTAGTTTAGCCTTGTC+TGG | + | chr3_2:90661825-90661844 | Msa0436820:CDS | 45.0% |
| !! | CTCCTAGTTTAGCCTTGTCT+GGG | + | chr3_2:90661826-90661845 | Msa0436820:CDS | 45.0% |
| ATCCCAGACAAGGCTAAACT+AGG | - | chr3_2:90661831-90661850 | None:intergenic | 45.0% | |
| !! | TTTAGCCTTGTCTGGGATGA+TGG | + | chr3_2:90661833-90661852 | Msa0436820:CDS | 45.0% |
| TTTGTCCATCATCCCAGACA+AGG | - | chr3_2:90661841-90661860 | None:intergenic | 45.0% | |
| CAGAATGTGACTAATGCCAC+AGG | + | chr3_2:90661861-90661880 | Msa0436820:CDS | 45.0% | |
| GAAGCTCCAACCGATAGTAA+TGG | + | chr3_2:90661930-90661949 | Msa0436820:CDS | 45.0% | |
| GAGAGAGAGAAACCCTAGGA+GGG | - | chr3_2:90658245-90658264 | None:intergenic | 50.0% | |
| CCTAGAGAGAGAAAGAGGGA+GGG | - | chr3_2:90658267-90658286 | None:intergenic | 50.0% | |
| CCTCCCTCTTTCTCTCTCTA+GGG | + | chr3_2:90658265-90658284 | Msa0436820:intron | 50.0% | |
| TCAACAGGTCATTCTCACCG+TGG | - | chr3_2:90659438-90659457 | None:intergenic | 50.0% | |
| !! | GATAGGAGTGTCTGCCAAAG+TGG | - | chr3_2:90659876-90659895 | None:intergenic | 50.0% |
| ! | TTGCAGCTATGAGGGTACAC+GGG | - | chr3_2:90659939-90659958 | None:intergenic | 50.0% |
| ! | CTTGCAGCTATGAGGGTACA+CGG | - | chr3_2:90659940-90659959 | None:intergenic | 50.0% |
| GTGTCAGACCTTCCATGAAC+TGG | + | chr3_2:90660565-90660584 | Msa0436820:intron | 50.0% | |
| GACCTTCCATGAACTGGAGA+TGG | + | chr3_2:90660571-90660590 | Msa0436820:intron | 50.0% | |
| CATTTCCCCTAAAGGGCTCA+AGG | + | chr3_2:90661217-90661236 | Msa0436820:intron | 50.0% | |
| TTTCCCTAACATCCTTGCGG+AGG | + | chr3_2:90661426-90661445 | Msa0436820:CDS | 50.0% | |
| CTTCCTCCGCAAGGATGTTA+GGG | - | chr3_2:90661432-90661451 | None:intergenic | 50.0% | |
| AAAGGCCGAAATGGACGACA+AGG | + | chr3_2:90661500-90661519 | Msa0436820:CDS | 50.0% | |
| ATGCACCTGATGAAGCTGCA+AGG | + | chr3_2:90661572-90661591 | Msa0436820:CDS | 50.0% | |
| TGCACCTGATGAAGCTGCAA+GGG | + | chr3_2:90661573-90661592 | Msa0436820:CDS | 50.0% | |
| GATCTACGACACCCCATGAA+GGG | + | chr3_2:90661696-90661715 | Msa0436820:intron | 50.0% | |
| TCCTTATCGTTTCGGCTGTC+AGG | + | chr3_2:90662180-90662199 | Msa0436820:three_prime_UTR | 50.0% | |
| GAAGAAATCATCGGGAGGCG+CGG | + | chr3_2:90658167-90658186 | Msa0436820:CDS | 55.0% | |
| AGAAACCCTAGGAGGGACGT+CGG | - | chr3_2:90658238-90658257 | None:intergenic | 55.0% | |
| GGAGAGAGAGAAACCCTAGG+AGG | - | chr3_2:90658246-90658265 | None:intergenic | 55.0% | |
| GAGGGAGAGAGAGAAACCCT+AGG | - | chr3_2:90658249-90658268 | None:intergenic | 55.0% | |
| CCCTCCCTCTTTCTCTCTCT+AGG | + | chr3_2:90658264-90658283 | Msa0436820:intron | 55.0% | |
| CCCTAGAGAGAGAAAGAGGG+AGG | - | chr3_2:90658268-90658287 | None:intergenic | 55.0% | |
| CACGGCCACACACAAAAAGG+TGG | - | chr3_2:90659482-90659501 | None:intergenic | 55.0% | |
| GCTTCCTCCGCAAGGATGTT+AGG | - | chr3_2:90661433-90661452 | None:intergenic | 55.0% | |
| CTTGCCCTTGCAGCTTCATC+AGG | - | chr3_2:90661580-90661599 | None:intergenic | 55.0% | |
| CTGATGAAGCTGCAAGGGCA+AGG | + | chr3_2:90661578-90661597 | Msa0436820:CDS | 55.0% | |
| GGATCTACGACACCCCATGA+AGG | + | chr3_2:90661695-90661714 | Msa0436820:intron | 55.0% | |
| TCCACTGATGCTGCCTCACA+AGG | + | chr3_2:90661885-90661904 | Msa0436820:CDS | 55.0% | |
| TCCTGTTGTGCTGCCTTGTG+AGG | - | chr3_2:90661901-90661920 | None:intergenic | 55.0% | |
| ACAAGGCAGCACAACAGGAC+CGG | + | chr3_2:90661902-90661921 | Msa0436820:CDS | 55.0% | |
| TCGGTTGGAGCTTCATGCTC+CGG | - | chr3_2:90661924-90661943 | None:intergenic | 55.0% | |
| GCCTGACAGCCGAAACGATA+AGG | - | chr3_2:90662184-90662203 | None:intergenic | 55.0% | |
| TGACATGGGTGCGTGTGCCA+CGG | + | chr3_2:90659418-90659437 | Msa0436820:intron | 60.0% | |
| !! | GCAGTGTTGCTTCCTCCGCA+AGG | - | chr3_2:90661441-90661460 | None:intergenic | 60.0% |
| GCCTTGTGAGGCAGCATCAG+TGG | - | chr3_2:90661889-90661908 | None:intergenic | 60.0% | |
| GCCTCACAAGGCAGCACAAC+AGG | + | chr3_2:90661897-90661916 | Msa0436820:CDS | 60.0% | |
| ! | GATCTGGTGCGGAGGAGCGT+CGG | - | chr3_2:90658209-90658228 | None:intergenic | 65.0% |
| GTCGGAGGAGGGATCTGGTG+CGG | - | chr3_2:90658220-90658239 | None:intergenic | 65.0% | |
| CTAGGAGGGACGTCGGAGGA+GGG | - | chr3_2:90658231-90658250 | None:intergenic | 65.0% | |
| CTCCTCCGACGTCCCTCCTA+GGG | + | chr3_2:90658230-90658249 | Msa0436820:CDS | 65.0% | |
| AACCCTAGGAGGGACGTCGG+AGG | - | chr3_2:90658235-90658254 | None:intergenic | 65.0% | |
| CACGCACCCATGTCAGGCAG+AGG | - | chr3_2:90659413-90659432 | None:intergenic | 65.0% | |
| GTGGCACACGCACCCATGTC+AGG | - | chr3_2:90659419-90659438 | None:intergenic | 65.0% | |
| GGCAGCATCAGTGGACCCTG+TGG | - | chr3_2:90661880-90661899 | None:intergenic | 65.0% | |
| GGAGGAGGGATCTGGTGCGG+AGG | - | chr3_2:90658217-90658236 | None:intergenic | 70.0% | |
| GGGACGTCGGAGGAGGGATC+TGG | - | chr3_2:90658225-90658244 | None:intergenic | 70.0% | |
| CCTAGGAGGGACGTCGGAGG+AGG | - | chr3_2:90658232-90658251 | None:intergenic | 70.0% | |
| CCTCCTCCGACGTCCCTCCT+AGG | + | chr3_2:90658229-90658248 | Msa0436820:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 90658041 | 90662212 | 90658041 | ID=Msa0436820;Name=Msa0436820 |
| chr3_2 | mRNA | 90658041 | 90662212 | 90658041 | ID=Msa0436820-mRNA-1;Parent=Msa0436820;Name=Msa0436820-mRNA-1;_AED=0.02;_eAED=0.02;_QI=124|1|1|1|1|1|5|172|364 |
| chr3_2 | exon | 90658041 | 90658251 | 90658041 | ID=Msa0436820-mRNA-1:exon:26954;Parent=Msa0436820-mRNA-1 |
| chr3_2 | exon | 90658883 | 90659197 | 90658883 | ID=Msa0436820-mRNA-1:exon:26955;Parent=Msa0436820-mRNA-1 |
| chr3_2 | exon | 90659816 | 90660017 | 90659816 | ID=Msa0436820-mRNA-1:exon:26956;Parent=Msa0436820-mRNA-1 |
| chr3_2 | exon | 90661371 | 90661599 | 90661371 | ID=Msa0436820-mRNA-1:exon:26957;Parent=Msa0436820-mRNA-1 |
| chr3_2 | exon | 90661779 | 90662212 | 90661779 | ID=Msa0436820-mRNA-1:exon:26958;Parent=Msa0436820-mRNA-1 |
| chr3_2 | five_prime_UTR | 90658041 | 90658164 | 90658041 | ID=Msa0436820-mRNA-1:five_prime_utr;Parent=Msa0436820-mRNA-1 |
| chr3_2 | CDS | 90658165 | 90658251 | 90658165 | ID=Msa0436820-mRNA-1:cds;Parent=Msa0436820-mRNA-1 |
| chr3_2 | CDS | 90658883 | 90659197 | 90658883 | ID=Msa0436820-mRNA-1:cds;Parent=Msa0436820-mRNA-1 |
| chr3_2 | CDS | 90659816 | 90660017 | 90659816 | ID=Msa0436820-mRNA-1:cds;Parent=Msa0436820-mRNA-1 |
| chr3_2 | CDS | 90661371 | 90661599 | 90661371 | ID=Msa0436820-mRNA-1:cds;Parent=Msa0436820-mRNA-1 |
| chr3_2 | CDS | 90661779 | 90662040 | 90661779 | ID=Msa0436820-mRNA-1:cds;Parent=Msa0436820-mRNA-1 |
| chr3_2 | three_prime_UTR | 90662041 | 90662212 | 90662041 | ID=Msa0436820-mRNA-1:three_prime_utr;Parent=Msa0436820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
