Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364150 | XP_003600430.1 | 82.817 | 355 | 25 | 2 | 1 | 345 | 1 | 329 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364150 | sp|F4I1X0|HIP41_ARATH | 55.310 | 226 | 75 | 1 | 23 | 248 | 17 | 216 | 2.07e-84 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364150 | G7IY67 | 82.817 | 355 | 25 | 2 | 1 | 345 | 1 | 329 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0205440 | Msa0364150 | 0.802721 | 4.905745e-49 | -8.615850e-47 |
| Msa0364150 | Msa0486400 | 0.855806 | 4.927111e-62 | -8.615850e-47 |
| Msa0364150 | Msa1144370 | 0.822777 | 1.975572e-53 | -8.615850e-47 |
| Msa0248680 | Msa0364150 | 0.810090 | 1.370044e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364150 | MtrunA17_Chr3g0103011 | 93.600 | 250 | 16 | 0 | 96 | 345 | 17 | 266 | 7.23e-178 | 501 |
| Msa0364150 | MtrunA17_Chr5g0444781 | 44.068 | 236 | 105 | 2 | 21 | 256 | 4 | 212 | 6.83e-66 | 213 |
| Msa0364150 | MtrunA17_Chr5g0444781 | 53.968 | 63 | 29 | 0 | 18 | 80 | 250 | 312 | 1.91e-13 | 70.9 |
| Msa0364150 | MtrunA17_Chr6g0483571 | 47.577 | 227 | 92 | 3 | 23 | 248 | 2 | 202 | 3.29e-60 | 194 |
| Msa0364150 | MtrunA17_Chr6g0483551 | 45.815 | 227 | 96 | 3 | 23 | 248 | 2 | 202 | 1.06e-59 | 193 |
| Msa0364150 | MtrunA17_Chr6g0483591 | 44.000 | 225 | 100 | 1 | 24 | 248 | 3 | 201 | 8.25e-58 | 188 |
| Msa0364150 | MtrunA17_Chr2g0290801 | 42.222 | 225 | 103 | 2 | 25 | 248 | 41 | 239 | 3.64e-54 | 180 |
| Msa0364150 | MtrunA17_Chr5g0444791 | 42.667 | 150 | 79 | 2 | 101 | 248 | 16 | 160 | 3.72e-32 | 122 |
| Msa0364150 | MtrunA17_Chr3g0103001 | 92.453 | 53 | 4 | 0 | 23 | 75 | 33 | 85 | 8.45e-30 | 110 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0364150 | AT1G55790.1 | 55.310 | 226 | 75 | 1 | 23 | 248 | 17 | 216 | 4.84e-87 | 270 |
| Msa0364150 | AT4G26485.1 | 44.978 | 229 | 97 | 3 | 23 | 248 | 4 | 206 | 1.91e-58 | 190 |
| Msa0364150 | AT1G55803.1 | 55.224 | 134 | 34 | 1 | 23 | 156 | 15 | 122 | 9.29e-46 | 154 |
| Msa0364150 | AT5G56075.1 | 38.961 | 231 | 95 | 4 | 22 | 248 | 62 | 250 | 4.39e-45 | 157 |
| Msa0364150 | AT5G25030.1 | 36.681 | 229 | 102 | 5 | 22 | 248 | 4 | 191 | 3.67e-40 | 142 |
| Msa0364150 | AT5G56060.1 | 44.898 | 147 | 77 | 3 | 96 | 240 | 7 | 151 | 1.35e-36 | 132 |
| Msa0364150 | AT1G55800.1 | 57.143 | 84 | 36 | 0 | 165 | 248 | 11 | 94 | 2.49e-27 | 109 |
| Msa0364150 | AT2G11045.1 | 34.395 | 157 | 62 | 5 | 96 | 248 | 15 | 134 | 8.17e-16 | 74.3 |
Find 91 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATAGTCTCTCAAGTATT+TGG | 0.136523 | 3_1:-56899185 | None:intergenic |
| ACTATTAAAGCATTATAAAT+AGG | 0.172562 | 3_1:-56896925 | None:intergenic |
| CTTTCTATTGCAAAAGCTTT+TGG | 0.255346 | 3_1:+56896847 | Msa0364150:CDS |
| GCTTCTTCACTTGACACTTA+TGG | 0.273879 | 3_1:+56896889 | Msa0364150:CDS |
| AAGTCAAATTCTGATCTAAT+TGG | 0.285572 | 3_1:-56898941 | None:intergenic |
| CATTTCTTCTAAATTTGATT+TGG | 0.290201 | 3_1:-56897996 | None:intergenic |
| GGATCCCTTGTTTGCCTACT+AGG | 0.306423 | 3_1:+56899222 | Msa0364150:three_prime_UTR |
| TGAAGGAGAAGGGGATGTTA+TGG | 0.320084 | 3_1:+56899054 | Msa0364150:CDS |
| CTCTGAATCTCTTCATGAAA+TGG | 0.328925 | 3_1:-56898800 | None:intergenic |
| CTGTAGTGCCATTAGATATA+AGG | 0.355231 | 3_1:+56899287 | Msa0364150:three_prime_UTR |
| TCCAGCTCTTCTCCTCCACT+TGG | 0.364659 | 3_1:-56899109 | None:intergenic |
| TCAGAATTTGACTTGAGAAA+TGG | 0.370628 | 3_1:+56898950 | Msa0364150:CDS |
| CTATTAAAGCATTATAAATA+GGG | 0.378704 | 3_1:-56896924 | None:intergenic |
| AGAATGCATGTGAGATGCTT+AGG | 0.383246 | 3_1:+56898495 | Msa0364150:CDS |
| CCTCGTTTGTTGTTGTAACC+TGG | 0.390809 | 3_1:-56898644 | None:intergenic |
| CTATATGATTTCCCCTCAAA+TGG | 0.396400 | 3_1:-56898751 | None:intergenic |
| GTGAATTTAAAGGATGCATA+TGG | 0.407557 | 3_1:+56898451 | Msa0364150:intron |
| GGAAGATAGTTGAGATCAAC+TGG | 0.409488 | 3_1:-56898842 | None:intergenic |
| CAATCATTGTCAGAAAGCTT+TGG | 0.412205 | 3_1:-56898592 | None:intergenic |
| GGGTCTGGTGCGGTTCCTCT+TGG | 0.414919 | 3_1:-56899164 | None:intergenic |
| ACATAGTCTCTCAAGTATTT+GGG | 0.415278 | 3_1:-56899184 | None:intergenic |
| TTTGTTTGTGTAGACAATTA+TGG | 0.418283 | 3_1:+56897580 | Msa0364150:intron |
| GTCTCTCAAGTATTTGGGTC+TGG | 0.419801 | 3_1:-56899179 | None:intergenic |
| CACTAAGGCCTTATATCTAA+TGG | 0.420923 | 3_1:-56899295 | None:intergenic |
| TCAAGTTGTCTTCCTTCCTA+TGG | 0.423108 | 3_1:-56898135 | None:intergenic |
| GCGGTTCCTCTTGGCCCGTA+TGG | 0.428241 | 3_1:-56899155 | None:intergenic |
| CAAAATTGACCTTGTCCTCA+AGG | 0.439623 | 3_1:-56899033 | None:intergenic |
| CGGTTCCTCTTGGCCCGTAT+GGG | 0.439724 | 3_1:-56899154 | None:intergenic |
| TTTAGAAGAAATGCAGAAGC+TGG | 0.442106 | 3_1:+56898006 | Msa0364150:CDS |
| CCCAAGTGGAGGAGAAGAGC+TGG | 0.446261 | 3_1:+56899108 | Msa0364150:CDS |
| CTGCACTCACCGAGAGGAAA+GGG | 0.451162 | 3_1:-56898689 | None:intergenic |
| AACAGTAATGAAATTTCATC+CGG | 0.452991 | 3_1:+56898057 | Msa0364150:CDS |
| CCATTCCTAGTAGGCAAACA+AGG | 0.464092 | 3_1:-56899227 | None:intergenic |
| TTCAACAAGGAAGATTATCC+AGG | 0.465047 | 3_1:+56898626 | Msa0364150:CDS |
| ATGCATATGGATCTCGTGTT+CGG | 0.467055 | 3_1:+56898464 | Msa0364150:CDS |
| ACTTGGGTCAGCAAGTTCAA+TGG | 0.467706 | 3_1:-56899092 | None:intergenic |
| CTTGGGTCAGCAAGTTCAAT+GGG | 0.471454 | 3_1:-56899091 | None:intergenic |
| CTACACCTCCTTTCAATGAC+TGG | 0.471883 | 3_1:+56898549 | Msa0364150:CDS |
| CCTTGTTTGCCTACTAGGAA+TGG | 0.473495 | 3_1:+56899227 | Msa0364150:three_prime_UTR |
| ATATCTAATGGCACTACAGC+TGG | 0.488920 | 3_1:-56899283 | None:intergenic |
| ATATTCAACTTTCCTCATGC+AGG | 0.489206 | 3_1:+56898109 | Msa0364150:CDS |
| CATTGTCAGAAAGCTTTGGT+TGG | 0.492728 | 3_1:-56898588 | None:intergenic |
| TGATCATCAAATACTGTTAG+TGG | 0.493099 | 3_1:+56896801 | Msa0364150:CDS |
| CTGGGAGCATATGTGTTACA+TGG | 0.500115 | 3_1:+56898025 | Msa0364150:CDS |
| AGACCTTATCCATTCCTAGT+AGG | 0.500939 | 3_1:-56899236 | None:intergenic |
| CATTAGATATAAGGCCTTAG+TGG | 0.506734 | 3_1:+56899296 | Msa0364150:three_prime_UTR |
| AGTGCATGTAAGAAGAAACT+AGG | 0.508831 | 3_1:+56896730 | Msa0364150:CDS |
| TTGCCTACTAGGAATGGATA+AGG | 0.510045 | 3_1:+56899233 | Msa0364150:three_prime_UTR |
| AGGAATGGATAAGGTCTTAG+TGG | 0.511022 | 3_1:+56899242 | Msa0364150:three_prime_UTR |
| TAGTTGAGATCAACTGGAGC+TGG | 0.515891 | 3_1:-56898836 | None:intergenic |
| TTTGGAAATAAACTTGTTCG+AGG | 0.521347 | 3_1:-56898863 | None:intergenic |
| GAATGCATGTGAGATGCTTA+GGG | 0.525444 | 3_1:+56898496 | Msa0364150:CDS |
| TATAATATAATGTTCCACTA+AGG | 0.528049 | 3_1:-56899310 | None:intergenic |
| ATGGATACAATCCGATCTCA+AGG | 0.528394 | 3_1:+56898969 | Msa0364150:CDS |
| TGTGATGACCCCTTTCCTCT+CGG | 0.528821 | 3_1:+56898680 | Msa0364150:CDS |
| CCAGCTCTTCTCCTCCACTT+GGG | 0.530467 | 3_1:-56899108 | None:intergenic |
| GAGAAGAGCTGGAAGAAGAC+AGG | 0.532441 | 3_1:+56899119 | Msa0364150:CDS |
| TTGTTGATCTCCCTTGAGAT+CGG | 0.536772 | 3_1:-56898980 | None:intergenic |
| TCCTGTTCATGTAGATGAGG+TGG | 0.543865 | 3_1:+56897955 | Msa0364150:intron |
| CAAATACTGTTAGTGGGTGA+TGG | 0.554164 | 3_1:+56896808 | Msa0364150:CDS |
| GGATCCATGTTACTCCCATA+CGG | 0.560176 | 3_1:+56899140 | Msa0364150:CDS |
| CAAATACTTGAGAGACTATG+TGG | 0.561291 | 3_1:+56899186 | Msa0364150:CDS |
| TCAATGTTCCAGTCATTGAA+AGG | 0.564225 | 3_1:-56898557 | None:intergenic |
| GATCATCAAATACTGTTAGT+GGG | 0.567279 | 3_1:+56896802 | Msa0364150:CDS |
| CTATGTGGATCAGTAAGCAC+AGG | 0.573416 | 3_1:+56899201 | Msa0364150:exon |
| TCATGCAGGTTTCCATAGGA+AGG | 0.577731 | 3_1:+56898123 | Msa0364150:CDS |
| GCTGCACTCACCGAGAGGAA+AGG | 0.578471 | 3_1:-56898690 | None:intergenic |
| TTTAGAAAGTGATTTGTCTG+AGG | 0.579433 | 3_1:-56898908 | None:intergenic |
| ACTTCTGAACCTTGAGGACA+AGG | 0.580193 | 3_1:+56899024 | Msa0364150:CDS |
| TTAGAAGAAATGCAGAAGCT+GGG | 0.580428 | 3_1:+56898007 | Msa0364150:CDS |
| TCAAGTATTTGGGTCTGGTG+CGG | 0.585653 | 3_1:-56899174 | None:intergenic |
| TTCCTCATGCAGGTTTCCAT+AGG | 0.587250 | 3_1:+56898119 | Msa0364150:CDS |
| AGCATATGTGTTACATGGAG+TGG | 0.589305 | 3_1:+56898030 | Msa0364150:CDS |
| GTGCATGTAAGAAGAAACTA+GGG | 0.590755 | 3_1:+56896731 | Msa0364150:CDS |
| TGTGAGATGCTTAGGGCCAA+TGG | 0.593917 | 3_1:+56898503 | Msa0364150:CDS |
| TCTAATGGCACTACAGCTGG+TGG | 0.609934 | 3_1:-56899280 | None:intergenic |
| GATCCATGTTACTCCCATAC+GGG | 0.611469 | 3_1:+56899141 | Msa0364150:CDS |
| TGAAATACTTCTGAACCTTG+AGG | 0.612747 | 3_1:+56899018 | Msa0364150:CDS |
| ATTGACATGAATCTCACCAT+TGG | 0.626240 | 3_1:-56898519 | None:intergenic |
| TGGCCCGTATGGGAGTAACA+TGG | 0.633048 | 3_1:-56899144 | None:intergenic |
| CATTCCTAGTAGGCAAACAA+GGG | 0.636597 | 3_1:-56899226 | None:intergenic |
| GAACTTGCTGACCCAAGTGG+AGG | 0.643038 | 3_1:+56899097 | Msa0364150:CDS |
| TGGATACAATCCGATCTCAA+GGG | 0.656266 | 3_1:+56898970 | Msa0364150:CDS |
| ATTGAACTTGCTGACCCAAG+TGG | 0.657087 | 3_1:+56899094 | Msa0364150:CDS |
| TGCACTCACCGAGAGGAAAG+GGG | 0.659965 | 3_1:-56898688 | None:intergenic |
| TTCCTATGGAAACCTGCATG+AGG | 0.665648 | 3_1:-56898121 | None:intergenic |
| CCAGGTTACAACAACAAACG+AGG | 0.674784 | 3_1:+56898644 | Msa0364150:CDS |
| ATGTTCCAGTCATTGAAAGG+AGG | 0.678903 | 3_1:-56898554 | None:intergenic |
| TTACTCCCATACGGGCCAAG+AGG | 0.679246 | 3_1:+56899149 | Msa0364150:CDS |
| TGACTGCATTGATTTCAACA+AGG | 0.696255 | 3_1:+56898613 | Msa0364150:CDS |
| AAAGTGCTGCACTCACCGAG+AGG | 0.706700 | 3_1:-56898695 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAAATTTTGATATTTGAAT+TGG | + | chr3_1:56896995-56897014 | Msa0364150:intron | 10.0% |
| !! | AAATAATGTTATACTATAAT+GGG | + | chr3_1:56897038-56897057 | Msa0364150:intron | 10.0% |
| !!! | TAATTAACATATTTCTAAAT+AGG | - | chr3_1:56898359-56898378 | None:intergenic | 10.0% |
| !!! | CTATTAAAGCATTATAAATA+GGG | - | chr3_1:56896927-56896946 | None:intergenic | 15.0% |
| !!! | ACTATTAAAGCATTATAAAT+AGG | - | chr3_1:56896928-56896947 | None:intergenic | 15.0% |
| !! | GAAATAATGTTATACTATAA+TGG | + | chr3_1:56897037-56897056 | Msa0364150:intron | 15.0% |
| !!! | TTTTGTAGTTTTTTTTTCTT+AGG | + | chr3_1:56897115-56897134 | Msa0364150:intron | 15.0% |
| !!! | TTTGTAGTTTTTTTTTCTTA+GGG | + | chr3_1:56897116-56897135 | Msa0364150:intron | 15.0% |
| !! | ATTCCTTTATGAATAAATAA+AGG | - | chr3_1:56897192-56897211 | None:intergenic | 15.0% |
| !! | CAAATTTCTTAAATTGTTTA+TGG | - | chr3_1:56897293-56897312 | None:intergenic | 15.0% |
| !!! | ACATAGTTATTTTTTTTGAT+CGG | + | chr3_1:56897433-56897452 | Msa0364150:intron | 15.0% |
| !!! | ATCAAAAGTTTGAAATAAAA+AGG | - | chr3_1:56897647-56897666 | None:intergenic | 15.0% |
| !! | AGAAATATGTTAATTATCTT+TGG | + | chr3_1:56898363-56898382 | Msa0364150:intron | 15.0% |
| !!! | ATTTCTTTAAGAAAAAGAAA+AGG | + | chr3_1:56899415-56899434 | Msa0364150:three_prime_UTR | 15.0% |
| !! | TTTAACACTAAACGAAAAAA+GGG | - | chr3_1:56896979-56896998 | None:intergenic | 20.0% |
| !!! | TTTTAACACTAAACGAAAAA+AGG | - | chr3_1:56896980-56896999 | None:intergenic | 20.0% |
| !!! | TTGTAGTTTTTTTTTCTTAG+GGG | + | chr3_1:56897117-56897136 | Msa0364150:intron | 20.0% |
| !!! | AAGCCTTTATTTATTCATAA+AGG | + | chr3_1:56897186-56897205 | Msa0364150:intron | 20.0% |
| !!! | GTGTTTTTGAATATGATAAA+AGG | + | chr3_1:56897455-56897474 | Msa0364150:intron | 20.0% |
| !!! | GTTTTTTTCCTTATCTAATA+TGG | + | chr3_1:56897797-56897816 | Msa0364150:intron | 20.0% |
| !! | AAACTATACCATATTAGATA+AGG | - | chr3_1:56897808-56897827 | None:intergenic | 20.0% |
| !! | CATTTCTTCTAAATTTGATT+TGG | - | chr3_1:56897999-56898018 | None:intergenic | 20.0% |
| !! | ACTTGTGCATAATAATAAAA+GGG | - | chr3_1:56898315-56898334 | None:intergenic | 20.0% |
| !! | AACTTGTGCATAATAATAAA+AGG | - | chr3_1:56898316-56898335 | None:intergenic | 20.0% |
| !!! | CAATTGAATTGATTCATTTT+TGG | - | chr3_1:56898884-56898903 | None:intergenic | 20.0% |
| !! | TATAATATAATGTTCCACTA+AGG | - | chr3_1:56899313-56899332 | None:intergenic | 20.0% |
| !!! | TGTAGTTTTTTTTTCTTAGG+GGG | + | chr3_1:56897118-56897137 | Msa0364150:intron | 25.0% |
| ! | TTTGTTTGTGTAGACAATTA+TGG | + | chr3_1:56897580-56897599 | Msa0364150:intron | 25.0% |
| !! | TTCCTATTGTTCACAATTTT+TGG | + | chr3_1:56897671-56897690 | Msa0364150:intron | 25.0% |
| !! | TCCTATTGTTCACAATTTTT+GGG | + | chr3_1:56897672-56897691 | Msa0364150:intron | 25.0% |
| !!! | CTAATATGGTATAGTTTTGA+AGG | + | chr3_1:56897811-56897830 | Msa0364150:intron | 25.0% |
| ! | AACAGTAATGAAATTTCATC+CGG | + | chr3_1:56898057-56898076 | Msa0364150:CDS | 25.0% |
| !! | TTGAGTACTTTTAAACACTT+CGG | + | chr3_1:56898214-56898233 | Msa0364150:intron | 25.0% |
| ! | CTTGTGCATAATAATAAAAG+GGG | - | chr3_1:56898314-56898333 | None:intergenic | 25.0% |
| ! | ATCTTTGGTTATCATAGTTA+AGG | + | chr3_1:56898378-56898397 | Msa0364150:intron | 25.0% |
| !! | AAATGGTTTTTCATACTTCT+AGG | - | chr3_1:56898737-56898756 | None:intergenic | 25.0% |
| ! | AAGTATGAAAAACCATTTGA+GGG | + | chr3_1:56898739-56898758 | Msa0364150:CDS | 25.0% |
| ! | AAGTCAAATTCTGATCTAAT+TGG | - | chr3_1:56898944-56898963 | None:intergenic | 25.0% |
| !! | CTTTTCTTCTTTGATTTTCG+TGG | - | chr3_1:56896712-56896731 | None:intergenic | 30.0% |
| AGCAACAACAACAACAAAAA+TGG | + | chr3_1:56896761-56896780 | Msa0364150:CDS | 30.0% | |
| TGATCATCAAATACTGTTAG+TGG | + | chr3_1:56896801-56896820 | Msa0364150:CDS | 30.0% | |
| GATCATCAAATACTGTTAGT+GGG | + | chr3_1:56896802-56896821 | Msa0364150:CDS | 30.0% | |
| ! | CTTTCTATTGCAAAAGCTTT+TGG | + | chr3_1:56896847-56896866 | Msa0364150:CDS | 30.0% |
| !!! | TTGGATGCATGTTTTTTAGT+TGG | + | chr3_1:56897014-56897033 | Msa0364150:intron | 30.0% |
| !!! | TGGATGCATGTTTTTTAGTT+GGG | + | chr3_1:56897015-56897034 | Msa0364150:intron | 30.0% |
| !! | TCGTTGTTTCTTTGAAATGA+AGG | + | chr3_1:56897225-56897244 | Msa0364150:intron | 30.0% |
| TGTTGATGTTGTATTAGTGT+TGG | + | chr3_1:56897342-56897361 | Msa0364150:intron | 30.0% | |
| !! | TGTTGTATTAGTGTTGGTTT+AGG | + | chr3_1:56897348-56897367 | Msa0364150:intron | 30.0% |
| !! | GTTGTATTAGTGTTGGTTTA+GGG | + | chr3_1:56897349-56897368 | Msa0364150:intron | 30.0% |
| TAGTAGCAACTTTCTTTGAT+TGG | - | chr3_1:56897511-56897530 | None:intergenic | 30.0% | |
| TCCCAAAAATTGTGAACAAT+AGG | - | chr3_1:56897676-56897695 | None:intergenic | 30.0% | |
| ! | TGGTTGCTTTGAATGAAAAT+AGG | + | chr3_1:56897838-56897857 | Msa0364150:intron | 30.0% |
| AGTAATGTGGCAAAATTTGA+CGG | - | chr3_1:56897890-56897909 | None:intergenic | 30.0% | |
| !! | TTTGATTTTGCAGAGTAATG+TGG | - | chr3_1:56897903-56897922 | None:intergenic | 30.0% |
| ! | AACCTCTGCATTTTTAAATC+CGG | - | chr3_1:56898079-56898098 | None:intergenic | 30.0% |
| GTGTTTCCTTGTGAATTTAA+AGG | + | chr3_1:56898441-56898460 | Msa0364150:intron | 30.0% | |
| ATGCATCCTTTAAATTCACA+AGG | - | chr3_1:56898450-56898469 | None:intergenic | 30.0% | |
| GTGAATTTAAAGGATGCATA+TGG | + | chr3_1:56898451-56898470 | Msa0364150:intron | 30.0% | |
| GAAGTATGAAAAACCATTTG+AGG | + | chr3_1:56898738-56898757 | Msa0364150:CDS | 30.0% | |
| AGTATGAAAAACCATTTGAG+GGG | + | chr3_1:56898740-56898759 | Msa0364150:CDS | 30.0% | |
| ! | TTTGGAAATAAACTTGTTCG+AGG | - | chr3_1:56898866-56898885 | None:intergenic | 30.0% |
| ! | TTTAGAAAGTGATTTGTCTG+AGG | - | chr3_1:56898911-56898930 | None:intergenic | 30.0% |
| !! | TCAGAATTTGACTTGAGAAA+TGG | + | chr3_1:56898950-56898969 | Msa0364150:CDS | 30.0% |
| ACATAGTCTCTCAAGTATTT+GGG | - | chr3_1:56899187-56899206 | None:intergenic | 30.0% | |
| AGTGCATGTAAGAAGAAACT+AGG | + | chr3_1:56896730-56896749 | Msa0364150:CDS | 35.0% | |
| GTGCATGTAAGAAGAAACTA+GGG | + | chr3_1:56896731-56896750 | Msa0364150:CDS | 35.0% | |
| TGCTACAGTTGCAAAACTTA+GGG | + | chr3_1:56897087-56897106 | Msa0364150:intron | 35.0% | |
| ! | ATTTCACGAAGTTGCGATTT+TGG | - | chr3_1:56897144-56897163 | None:intergenic | 35.0% |
| TCGCAACTTCGTGAAATTTA+AGG | + | chr3_1:56897147-56897166 | Msa0364150:intron | 35.0% | |
| CGCAACTTCGTGAAATTTAA+GGG | + | chr3_1:56897148-56897167 | Msa0364150:intron | 35.0% | |
| GCAACTTCGTGAAATTTAAG+GGG | + | chr3_1:56897149-56897168 | Msa0364150:intron | 35.0% | |
| !! | TTCTTTGAAATGAAGGTGCA+TGG | + | chr3_1:56897232-56897251 | Msa0364150:intron | 35.0% |
| ! | GGTTTAGGGTTTGAAGTTTA+CGG | + | chr3_1:56897363-56897382 | Msa0364150:intron | 35.0% |
| ! | TTGTGTTCAATCTGAAGTGT+CGG | + | chr3_1:56897406-56897425 | Msa0364150:intron | 35.0% |
| AAAGAAAGTTGCTACTACCA+GGG | + | chr3_1:56897514-56897533 | Msa0364150:intron | 35.0% | |
| AACCATAAATGACAATGTCG+AGG | - | chr3_1:56897553-56897572 | None:intergenic | 35.0% | |
| !!! | GCATGGTGATGTATTTTGAT+TGG | + | chr3_1:56897713-56897732 | Msa0364150:intron | 35.0% |
| GTTTAAGTAGTGTGTCTCAA+TGG | + | chr3_1:56897735-56897754 | Msa0364150:intron | 35.0% | |
| TCTGCAAAATCAAAATGCTC+TGG | + | chr3_1:56897909-56897928 | Msa0364150:intron | 35.0% | |
| TTTAGAAGAAATGCAGAAGC+TGG | + | chr3_1:56898006-56898025 | Msa0364150:CDS | 35.0% | |
| TTAGAAGAAATGCAGAAGCT+GGG | + | chr3_1:56898007-56898026 | Msa0364150:CDS | 35.0% | |
| ATCCGGATTTAAAAATGCAG+AGG | + | chr3_1:56898074-56898093 | Msa0364150:CDS | 35.0% | |
| ATATTCAACTTTCCTCATGC+AGG | + | chr3_1:56898109-56898128 | Msa0364150:CDS | 35.0% | |
| ! | TACTTTTAAACACTTCGGAG+TGG | + | chr3_1:56898219-56898238 | Msa0364150:intron | 35.0% |
| ATTGACATGAATCTCACCAT+TGG | - | chr3_1:56898522-56898541 | None:intergenic | 35.0% | |
| TCAATGTTCCAGTCATTGAA+AGG | - | chr3_1:56898560-56898579 | None:intergenic | 35.0% | |
| CAATCATTGTCAGAAAGCTT+TGG | - | chr3_1:56898595-56898614 | None:intergenic | 35.0% | |
| !! | TGACTGCATTGATTTCAACA+AGG | + | chr3_1:56898613-56898632 | Msa0364150:CDS | 35.0% |
| TTCAACAAGGAAGATTATCC+AGG | + | chr3_1:56898626-56898645 | Msa0364150:CDS | 35.0% | |
| CTATATGATTTCCCCTCAAA+TGG | - | chr3_1:56898754-56898773 | None:intergenic | 35.0% | |
| CTCTGAATCTCTTCATGAAA+TGG | - | chr3_1:56898803-56898822 | None:intergenic | 35.0% | |
| TGAAATACTTCTGAACCTTG+AGG | + | chr3_1:56899018-56899037 | Msa0364150:CDS | 35.0% | |
| !! | AAGGTCAATTTTGAAGGAGA+AGG | + | chr3_1:56899043-56899062 | Msa0364150:CDS | 35.0% |
| !! | AGGTCAATTTTGAAGGAGAA+GGG | + | chr3_1:56899044-56899063 | Msa0364150:CDS | 35.0% |
| CACATAGTCTCTCAAGTATT+TGG | - | chr3_1:56899188-56899207 | None:intergenic | 35.0% | |
| CAAATACTTGAGAGACTATG+TGG | + | chr3_1:56899186-56899205 | Msa0364150:CDS | 35.0% | |
| ! | CTGTAGTGCCATTAGATATA+AGG | + | chr3_1:56899287-56899306 | Msa0364150:three_prime_UTR | 35.0% |
| ! | CACTAAGGCCTTATATCTAA+TGG | - | chr3_1:56899298-56899317 | None:intergenic | 35.0% |
| CATTAGATATAAGGCCTTAG+TGG | + | chr3_1:56899296-56899315 | Msa0364150:three_prime_UTR | 35.0% | |
| ! | CAAATACTGTTAGTGGGTGA+TGG | + | chr3_1:56896808-56896827 | Msa0364150:CDS | 40.0% |
| GCTTCTTCACTTGACACTTA+TGG | + | chr3_1:56896889-56896908 | Msa0364150:CDS | 40.0% | |
| CTGCTACAGTTGCAAAACTT+AGG | + | chr3_1:56897086-56897105 | Msa0364150:intron | 40.0% | |
| GCTACAGTTGCAAAACTTAG+GGG | + | chr3_1:56897088-56897107 | Msa0364150:intron | 40.0% | |
| CTACAGTTGCAAAACTTAGG+GGG | + | chr3_1:56897089-56897108 | Msa0364150:intron | 40.0% | |
| ! | GGTTTGAAGTTTACGGTTGA+AGG | + | chr3_1:56897370-56897389 | Msa0364150:intron | 40.0% |
| CAAAGAAAGTTGCTACTACC+AGG | + | chr3_1:56897513-56897532 | Msa0364150:intron | 40.0% | |
| ! | GTCCTCGACATTGTCATTTA+TGG | + | chr3_1:56897548-56897567 | Msa0364150:intron | 40.0% |
| GTGCATGTGAATGTAATGCA+TGG | + | chr3_1:56897696-56897715 | Msa0364150:intron | 40.0% | |
| !!! | GGTATAGTTTTGAAGGTGCT+TGG | + | chr3_1:56897818-56897837 | Msa0364150:intron | 40.0% |
| AGCATATGTGTTACATGGAG+TGG | + | chr3_1:56898030-56898049 | Msa0364150:CDS | 40.0% | |
| ! | TCAAGTTGTCTTCCTTCCTA+TGG | - | chr3_1:56898138-56898157 | None:intergenic | 40.0% |
| ATGCATATGGATCTCGTGTT+CGG | + | chr3_1:56898464-56898483 | Msa0364150:CDS | 40.0% | |
| AGAATGCATGTGAGATGCTT+AGG | + | chr3_1:56898495-56898514 | Msa0364150:CDS | 40.0% | |
| GAATGCATGTGAGATGCTTA+GGG | + | chr3_1:56898496-56898515 | Msa0364150:CDS | 40.0% | |
| ATGTTCCAGTCATTGAAAGG+AGG | - | chr3_1:56898557-56898576 | None:intergenic | 40.0% | |
| ! | CATTGTCAGAAAGCTTTGGT+TGG | - | chr3_1:56898591-56898610 | None:intergenic | 40.0% |
| GGAAGATAGTTGAGATCAAC+TGG | - | chr3_1:56898845-56898864 | None:intergenic | 40.0% | |
| ATGGATACAATCCGATCTCA+AGG | + | chr3_1:56898969-56898988 | Msa0364150:CDS | 40.0% | |
| TGGATACAATCCGATCTCAA+GGG | + | chr3_1:56898970-56898989 | Msa0364150:CDS | 40.0% | |
| TTGTTGATCTCCCTTGAGAT+CGG | - | chr3_1:56898983-56899002 | None:intergenic | 40.0% | |
| CAAAATTGACCTTGTCCTCA+AGG | - | chr3_1:56899036-56899055 | None:intergenic | 40.0% | |
| ! | GAGGACAAGGTCAATTTTGA+AGG | + | chr3_1:56899037-56899056 | Msa0364150:CDS | 40.0% |
| !! | GGTCAATTTTGAAGGAGAAG+GGG | + | chr3_1:56899045-56899064 | Msa0364150:CDS | 40.0% |
| CATTCCTAGTAGGCAAACAA+GGG | - | chr3_1:56899229-56899248 | None:intergenic | 40.0% | |
| TTGCCTACTAGGAATGGATA+AGG | + | chr3_1:56899233-56899252 | Msa0364150:three_prime_UTR | 40.0% | |
| AGACCTTATCCATTCCTAGT+AGG | - | chr3_1:56899239-56899258 | None:intergenic | 40.0% | |
| AGGAATGGATAAGGTCTTAG+TGG | + | chr3_1:56899242-56899261 | Msa0364150:three_prime_UTR | 40.0% | |
| ATATCTAATGGCACTACAGC+TGG | - | chr3_1:56899286-56899305 | None:intergenic | 40.0% | |
| ! | GTAGTGTGTCTCAATGGACT+TGG | + | chr3_1:56897741-56897760 | Msa0364150:intron | 45.0% |
| CCTCATCTACATGAACAGGA+GGG | - | chr3_1:56897955-56897974 | None:intergenic | 45.0% | |
| ACCTCATCTACATGAACAGG+AGG | - | chr3_1:56897956-56897975 | None:intergenic | 45.0% | |
| TCCTGTTCATGTAGATGAGG+TGG | + | chr3_1:56897955-56897974 | Msa0364150:intron | 45.0% | |
| ACCACCTCATCTACATGAAC+AGG | - | chr3_1:56897959-56897978 | None:intergenic | 45.0% | |
| ! | CTGGGAGCATATGTGTTACA+TGG | + | chr3_1:56898025-56898044 | Msa0364150:CDS | 45.0% |
| TTCCTCATGCAGGTTTCCAT+AGG | + | chr3_1:56898119-56898138 | Msa0364150:CDS | 45.0% | |
| TTCCTATGGAAACCTGCATG+AGG | - | chr3_1:56898124-56898143 | None:intergenic | 45.0% | |
| TCATGCAGGTTTCCATAGGA+AGG | + | chr3_1:56898123-56898142 | Msa0364150:CDS | 45.0% | |
| CTACACCTCCTTTCAATGAC+TGG | + | chr3_1:56898549-56898568 | Msa0364150:CDS | 45.0% | |
| !! | CCTCGTTTGTTGTTGTAACC+TGG | - | chr3_1:56898647-56898666 | None:intergenic | 45.0% |
| CCAGGTTACAACAACAAACG+AGG | + | chr3_1:56898644-56898663 | Msa0364150:CDS | 45.0% | |
| TAGTTGAGATCAACTGGAGC+TGG | - | chr3_1:56898839-56898858 | None:intergenic | 45.0% | |
| ACTTCTGAACCTTGAGGACA+AGG | + | chr3_1:56899024-56899043 | Msa0364150:CDS | 45.0% | |
| TGAAGGAGAAGGGGATGTTA+TGG | + | chr3_1:56899054-56899073 | Msa0364150:CDS | 45.0% | |
| CTTGGGTCAGCAAGTTCAAT+GGG | - | chr3_1:56899094-56899113 | None:intergenic | 45.0% | |
| ACTTGGGTCAGCAAGTTCAA+TGG | - | chr3_1:56899095-56899114 | None:intergenic | 45.0% | |
| !! | ATTGAACTTGCTGACCCAAG+TGG | + | chr3_1:56899094-56899113 | Msa0364150:CDS | 45.0% |
| GGATCCATGTTACTCCCATA+CGG | + | chr3_1:56899140-56899159 | Msa0364150:CDS | 45.0% | |
| GATCCATGTTACTCCCATAC+GGG | + | chr3_1:56899141-56899160 | Msa0364150:CDS | 45.0% | |
| TCAAGTATTTGGGTCTGGTG+CGG | - | chr3_1:56899177-56899196 | None:intergenic | 45.0% | |
| GTCTCTCAAGTATTTGGGTC+TGG | - | chr3_1:56899182-56899201 | None:intergenic | 45.0% | |
| CTATGTGGATCAGTAAGCAC+AGG | + | chr3_1:56899201-56899220 | Msa0364150:exon | 45.0% | |
| CCATTCCTAGTAGGCAAACA+AGG | - | chr3_1:56899230-56899249 | None:intergenic | 45.0% | |
| ! | CCTTGTTTGCCTACTAGGAA+TGG | + | chr3_1:56899227-56899246 | Msa0364150:three_prime_UTR | 45.0% |
| CAGTTGCAAAACTTAGGGGG+CGG | + | chr3_1:56897092-56897111 | Msa0364150:intron | 50.0% | |
| TGACAATGTCGAGGACTCGA+GGG | - | chr3_1:56897544-56897563 | None:intergenic | 50.0% | |
| ATGACAATGTCGAGGACTCG+AGG | - | chr3_1:56897545-56897564 | None:intergenic | 50.0% | |
| CCCTCCTGTTCATGTAGATG+AGG | + | chr3_1:56897952-56897971 | Msa0364150:intron | 50.0% | |
| TGTGAGATGCTTAGGGCCAA+TGG | + | chr3_1:56898503-56898522 | Msa0364150:CDS | 50.0% | |
| TGTGATGACCCCTTTCCTCT+CGG | + | chr3_1:56898680-56898699 | Msa0364150:CDS | 50.0% | |
| GAGAAGAGCTGGAAGAAGAC+AGG | + | chr3_1:56899119-56899138 | Msa0364150:CDS | 50.0% | |
| ! | GGATCCCTTGTTTGCCTACT+AGG | + | chr3_1:56899222-56899241 | Msa0364150:three_prime_UTR | 50.0% |
| TCTAATGGCACTACAGCTGG+TGG | - | chr3_1:56899283-56899302 | None:intergenic | 50.0% | |
| TGCACTCACCGAGAGGAAAG+GGG | - | chr3_1:56898691-56898710 | None:intergenic | 55.0% | |
| CTGCACTCACCGAGAGGAAA+GGG | - | chr3_1:56898692-56898711 | None:intergenic | 55.0% | |
| !! | AAAGTGCTGCACTCACCGAG+AGG | - | chr3_1:56898698-56898717 | None:intergenic | 55.0% |
| !! | GAACTTGCTGACCCAAGTGG+AGG | + | chr3_1:56899097-56899116 | Msa0364150:CDS | 55.0% |
| CCAGCTCTTCTCCTCCACTT+GGG | - | chr3_1:56899111-56899130 | None:intergenic | 55.0% | |
| TCCAGCTCTTCTCCTCCACT+TGG | - | chr3_1:56899112-56899131 | None:intergenic | 55.0% | |
| TGGCCCGTATGGGAGTAACA+TGG | - | chr3_1:56899147-56899166 | None:intergenic | 55.0% | |
| TTACTCCCATACGGGCCAAG+AGG | + | chr3_1:56899149-56899168 | Msa0364150:CDS | 55.0% | |
| GAGGACTCGAGGGTTAACCC+TGG | - | chr3_1:56897534-56897553 | None:intergenic | 60.0% | |
| GCTGCACTCACCGAGAGGAA+AGG | - | chr3_1:56898693-56898712 | None:intergenic | 60.0% | |
| CCCAAGTGGAGGAGAAGAGC+TGG | + | chr3_1:56899108-56899127 | Msa0364150:CDS | 60.0% | |
| CGGTTCCTCTTGGCCCGTAT+GGG | - | chr3_1:56899157-56899176 | None:intergenic | 60.0% | |
| GCGGTTCCTCTTGGCCCGTA+TGG | - | chr3_1:56899158-56899177 | None:intergenic | 65.0% | |
| GGGTCTGGTGCGGTTCCTCT+TGG | - | chr3_1:56899167-56899186 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 56896706 | 56899443 | 56896706 | ID=Msa0364150;Name=Msa0364150 |
| chr3_1 | mRNA | 56896706 | 56899443 | 56896706 | ID=Msa0364150-mRNA-1;Parent=Msa0364150;Name=Msa0364150-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.33|0.5|1|1|1|4|227|411 |
| chr3_1 | exon | 56896706 | 56896945 | 56896706 | ID=Msa0364150-mRNA-1:exon:10663;Parent=Msa0364150-mRNA-1 |
| chr3_1 | exon | 56897593 | 56897635 | 56897593 | ID=Msa0364150-mRNA-1:exon:10664;Parent=Msa0364150-mRNA-1 |
| chr3_1 | exon | 56897969 | 56898167 | 56897969 | ID=Msa0364150-mRNA-1:exon:10665;Parent=Msa0364150-mRNA-1 |
| chr3_1 | exon | 56898463 | 56899443 | 56898463 | ID=Msa0364150-mRNA-1:exon:10666;Parent=Msa0364150-mRNA-1 |
| chr3_1 | CDS | 56896706 | 56896945 | 56896706 | ID=Msa0364150-mRNA-1:cds;Parent=Msa0364150-mRNA-1 |
| chr3_1 | CDS | 56897593 | 56897635 | 56897593 | ID=Msa0364150-mRNA-1:cds;Parent=Msa0364150-mRNA-1 |
| chr3_1 | CDS | 56897969 | 56898167 | 56897969 | ID=Msa0364150-mRNA-1:cds;Parent=Msa0364150-mRNA-1 |
| chr3_1 | CDS | 56898463 | 56899216 | 56898463 | ID=Msa0364150-mRNA-1:cds;Parent=Msa0364150-mRNA-1 |
| chr3_1 | three_prime_UTR | 56899217 | 56899443 | 56899217 | ID=Msa0364150-mRNA-1:three_prime_utr;Parent=Msa0364150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
