Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365080 | XP_024635477.1 | 96.693 | 514 | 16 | 1 | 1 | 514 | 1 | 513 | 0.0 | 1019 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365080 | A0A072UXC0 | 96.693 | 514 | 16 | 1 | 1 | 514 | 1 | 513 | 0.0 | 1019 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0365080 | Msa0412760 | 0.896584 | 3.206195e-76 | -8.615850e-47 |
| Msa0365080 | Msa0627080 | 0.831735 | 1.410278e-55 | -8.615850e-47 |
| Msa0365080 | Msa1028800 | 0.813504 | 2.475906e-51 | -8.615850e-47 |
| Msa0365080 | Msa1188820 | 0.812018 | 5.236747e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365080 | MtrunA17_Chr3g0104511 | 96.693 | 514 | 16 | 1 | 1 | 514 | 1 | 513 | 0.0 | 1019 |
| Msa0365080 | MtrunA17_Chr5g0436741 | 48.428 | 159 | 74 | 2 | 359 | 509 | 252 | 410 | 7.31e-44 | 160 |
| Msa0365080 | MtrunA17_Chr5g0436741 | 50.746 | 134 | 59 | 2 | 141 | 267 | 90 | 223 | 8.67e-34 | 132 |
| Msa0365080 | MtrunA17_Chr2g0333081 | 41.837 | 98 | 57 | 0 | 400 | 497 | 139 | 236 | 3.19e-19 | 87.8 |
| Msa0365080 | MtrunA17_Chr4g0063891 | 40.206 | 97 | 58 | 0 | 400 | 496 | 162 | 258 | 6.71e-18 | 84.3 |
| Msa0365080 | MtrunA17_Chr7g0262541 | 36.283 | 113 | 65 | 1 | 401 | 506 | 238 | 350 | 1.32e-17 | 84.3 |
| Msa0365080 | MtrunA17_Chr7g0262061 | 38.776 | 98 | 60 | 0 | 401 | 498 | 227 | 324 | 4.34e-17 | 82.8 |
| Msa0365080 | MtrunA17_Chr5g0411051 | 37.634 | 93 | 58 | 0 | 404 | 496 | 126 | 218 | 1.26e-15 | 77.0 |
| Msa0365080 | MtrunA17_Chr1g0186111 | 27.922 | 154 | 103 | 1 | 358 | 503 | 223 | 376 | 3.33e-14 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0365080 | AT1G07280.3 | 53.761 | 545 | 202 | 16 | 8 | 513 | 15 | 548 | 3.96e-178 | 512 |
| Msa0365080 | AT1G07280.1 | 53.761 | 545 | 202 | 16 | 8 | 513 | 15 | 548 | 3.96e-178 | 512 |
| Msa0365080 | AT1G07280.2 | 53.761 | 545 | 202 | 16 | 8 | 513 | 15 | 548 | 3.96e-178 | 512 |
| Msa0365080 | AT2G29670.1 | 50.709 | 564 | 196 | 18 | 1 | 513 | 1 | 533 | 1.20e-160 | 467 |
| Msa0365080 | AT2G29670.2 | 50.709 | 564 | 196 | 18 | 1 | 513 | 1 | 533 | 1.20e-160 | 467 |
| Msa0365080 | AT1G07280.4 | 49.894 | 471 | 180 | 16 | 8 | 436 | 15 | 471 | 5.28e-127 | 380 |
| Msa0365080 | AT3G47080.1 | 42.752 | 545 | 225 | 15 | 10 | 514 | 17 | 514 | 2.13e-125 | 376 |
| Msa0365080 | AT4G17940.1 | 39.785 | 93 | 56 | 0 | 404 | 496 | 154 | 246 | 3.28e-17 | 82.4 |
| Msa0365080 | AT5G20190.1 | 38.776 | 98 | 60 | 0 | 400 | 497 | 156 | 253 | 3.64e-17 | 82.4 |
| Msa0365080 | AT1G80130.1 | 35.052 | 97 | 63 | 0 | 400 | 496 | 165 | 261 | 7.60e-12 | 66.6 |
| Msa0365080 | AT4G32340.1 | 35.789 | 95 | 60 | 1 | 404 | 497 | 114 | 208 | 1.03e-11 | 65.5 |
Find 140 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTAAAACAAGATCAAAAT+TGG | 0.146495 | 3_1:-58802195 | Msa0365080:three_prime_UTR |
| TTCACATACACCAACGTTAA+TGG | 0.200607 | 3_1:-58804296 | Msa0365080:CDS |
| CACGAATTTGTTTCGTGATT+TGG | 0.217147 | 3_1:+58804921 | None:intergenic |
| ATAAATACGCAACCTTCTTA+TGG | 0.229097 | 3_1:-58802400 | Msa0365080:CDS |
| TGTTATTGTTATGCAGTTAT+AGG | 0.232247 | 3_1:-58801728 | Msa0365080:three_prime_UTR |
| CAATGAAAACAATGCAATTA+TGG | 0.238674 | 3_1:-58804695 | Msa0365080:CDS |
| AAACAATGCAATTATGGATT+TGG | 0.261658 | 3_1:-58804689 | Msa0365080:CDS |
| TCTTCACAGGTCTCGATCTT+TGG | 0.284883 | 3_1:-58804854 | Msa0365080:CDS |
| TCTTCTTCCTCTTCTTGTAT+TGG | 0.302233 | 3_1:+58804816 | None:intergenic |
| GGCCGCAGAAGAGACTTATT+TGG | 0.312086 | 3_1:-58802357 | Msa0365080:CDS |
| ACTTCCTCTTCTTGTTCTTC+CGG | 0.317190 | 3_1:-58804646 | Msa0365080:CDS |
| ACAGAACTTGTTTATCAAAC+AGG | 0.327067 | 3_1:-58803818 | Msa0365080:CDS |
| AGCATAATTTGCAGCATAAT+AGG | 0.327559 | 3_1:+58802307 | None:intergenic |
| AAGAAGAAGAAACTAAGATA+TGG | 0.341917 | 3_1:-58803961 | Msa0365080:CDS |
| AACTAAGATATGGGAATCTA+TGG | 0.346469 | 3_1:-58803951 | Msa0365080:CDS |
| AATGGTGGTGTTTATAAAAC+CGG | 0.350156 | 3_1:-58804001 | Msa0365080:CDS |
| CTTCTTGTATTGGTGGTAAG+TGG | 0.368840 | 3_1:+58804826 | None:intergenic |
| CGAATGGTGGGACCCCTTCC+CGG | 0.369922 | 3_1:+58802007 | None:intergenic |
| TTATTAAAAGCTTCAGCATC+TGG | 0.373541 | 3_1:+58802419 | None:intergenic |
| AGACCTGTGAAGAACAAAAT+TGG | 0.374071 | 3_1:+58804864 | None:intergenic |
| TTACACAAGAGGCTGTTTCC+AGG | 0.378319 | 3_1:-58801954 | Msa0365080:three_prime_UTR |
| GCAAGTAACAAAGCATTGTT+TGG | 0.387537 | 3_1:+58803782 | None:intergenic |
| AGGGGTAACCTTGGCGCAAC+TGG | 0.393308 | 3_1:+58801890 | None:intergenic |
| ACTAAAACAAGATCAAAATT+GGG | 0.394468 | 3_1:-58802194 | Msa0365080:three_prime_UTR |
| TCTTGTTCTTCCGGTTCGTC+TGG | 0.403172 | 3_1:-58804637 | Msa0365080:CDS |
| TCTTCCTCTTCTTGTATTGG+TGG | 0.405299 | 3_1:+58804819 | None:intergenic |
| AAGGAAGAATTTAGAGATGT+TGG | 0.412059 | 3_1:-58804499 | Msa0365080:CDS |
| TTATAGAAACGAAGAGGGTT+TGG | 0.416689 | 3_1:-58803918 | Msa0365080:CDS |
| CGTTGTTACTTGACATAGAA+TGG | 0.417033 | 3_1:+58804239 | None:intergenic |
| TTGTTTCGTGATTTGGATGA+TGG | 0.417401 | 3_1:+58804928 | None:intergenic |
| AGTAATACCGCCTCGGTTGA+TGG | 0.418632 | 3_1:-58804097 | Msa0365080:CDS |
| TTCATCCACCTCTGTTTCCC+CGG | 0.423932 | 3_1:+58803982 | None:intergenic |
| CATGAGTGTGATGTATATAT+AGG | 0.425321 | 3_1:+58805546 | None:intergenic |
| CTCCGGTGGCTCAAAATTAA+CGG | 0.427707 | 3_1:+58804606 | None:intergenic |
| CGGGAAGGGGTCCCACCATT+CGG | 0.428496 | 3_1:-58802006 | Msa0365080:three_prime_UTR |
| TTTGACGGGGATGGACGAAC+GGG | 0.434895 | 3_1:-58804031 | Msa0365080:CDS |
| GCATACGCAGGGTCCGGGAA+GGG | 0.438816 | 3_1:-58802020 | Msa0365080:three_prime_UTR |
| CATACGCAGGGTCCGGGAAG+GGG | 0.441791 | 3_1:-58802019 | Msa0365080:three_prime_UTR |
| AATGAAACAATTTGTTTCAC+CGG | 0.442034 | 3_1:-58803885 | Msa0365080:CDS |
| GCTCCCGCATACGCAGGGTC+CGG | 0.442051 | 3_1:-58802026 | Msa0365080:three_prime_UTR |
| AAATATAAACCGGTGGGGAG+TGG | 0.442813 | 3_1:-58804055 | Msa0365080:CDS |
| TTCTTGTATTGGTGGTAAGT+GGG | 0.454417 | 3_1:+58804827 | None:intergenic |
| TTCCCGGACCCTGCGTATGC+GGG | 0.454460 | 3_1:+58802023 | None:intergenic |
| AAGGTCACGGGTTCAAGTCC+TGG | 0.458245 | 3_1:+58801936 | None:intergenic |
| GATTCTTGAAAGAGTGCAAA+AGG | 0.467494 | 3_1:-58804359 | Msa0365080:CDS |
| TTTAAAGAAACTTACTCAAA+CGG | 0.471650 | 3_1:+58805402 | None:intergenic |
| CTTGTAAATCTTCATACAAA+AGG | 0.474845 | 3_1:+58804383 | None:intergenic |
| GGCATGAGAACCAGACGAAC+CGG | 0.475827 | 3_1:+58804627 | None:intergenic |
| CTCCCGCATACGCAGGGTCC+GGG | 0.477983 | 3_1:-58802025 | Msa0365080:three_prime_UTR |
| ATGCGGGAGCTTTAGTGCAC+CGG | 0.481830 | 3_1:+58802039 | None:intergenic |
| GAGGAAGAAGAACAATAAGA+AGG | 0.486358 | 3_1:-58804804 | Msa0365080:CDS |
| CTTCCCGGACCCTGCGTATG+CGG | 0.488315 | 3_1:+58802022 | None:intergenic |
| GATTCAATCTTAGCAGAAAC+CGG | 0.488724 | 3_1:+58803866 | None:intergenic |
| GCCTCGGTTGATGGAGGAAG+TGG | 0.490874 | 3_1:-58804088 | Msa0365080:CDS |
| TCCTCCGTCGTCAAACTCAC+CGG | 0.496712 | 3_1:-58805475 | Msa0365080:five_prime_UTR |
| CGCATACGCAGGGTCCGGGA+AGG | 0.499824 | 3_1:-58802021 | Msa0365080:three_prime_UTR |
| GGGAGTGGATTTGACGGGGA+TGG | 0.504157 | 3_1:-58804040 | Msa0365080:CDS |
| AGAAGAAGAAACTAAGATAT+GGG | 0.504906 | 3_1:-58803960 | Msa0365080:CDS |
| ATTTGACGGGGATGGACGAA+CGG | 0.508427 | 3_1:-58804032 | Msa0365080:CDS |
| TCTTGAGAAGAATCAGATAG+AGG | 0.509178 | 3_1:+58802245 | None:intergenic |
| CGCAGAAGAGACTTATTTGG+AGG | 0.512178 | 3_1:-58802354 | Msa0365080:CDS |
| GCAGCATAATAGGTGTTGCT+AGG | 0.514052 | 3_1:+58802317 | None:intergenic |
| TCGTTGCACATGAATTTGAC+AGG | 0.520886 | 3_1:-58803736 | Msa0365080:intron |
| TTTATGATTCTCAACGAAAA+CGG | 0.522567 | 3_1:+58804538 | None:intergenic |
| CCGGTGGGGAGTGGATTTGA+CGG | 0.530493 | 3_1:-58804046 | Msa0365080:CDS |
| TCAATGGGGATGGGTTGAGG+TGG | 0.534303 | 3_1:-58802087 | Msa0365080:three_prime_UTR |
| CGGCGGCAGAGAGATTATTC+CGG | 0.541801 | 3_1:+58805456 | None:intergenic |
| AAAACGTTCTCTGTTTCAAG+TGG | 0.550122 | 3_1:-58804121 | Msa0365080:CDS |
| TCATGTGACTGGAAGGTCAC+GGG | 0.550602 | 3_1:+58801924 | None:intergenic |
| CAGAACTTGTTTATCAAACA+GGG | 0.550923 | 3_1:-58803817 | Msa0365080:CDS |
| CCGCGGTGGGAAATATAAAC+CGG | 0.553139 | 3_1:-58804065 | Msa0365080:CDS |
| ATGGTGGTGTTTATAAAACC+GGG | 0.553717 | 3_1:-58804000 | Msa0365080:CDS |
| CTTTCTTTGATCTCCACCGA+GGG | 0.555446 | 3_1:+58801871 | None:intergenic |
| GAAACTTACTCAAACGGTGG+TGG | 0.555885 | 3_1:+58805408 | None:intergenic |
| ACTAAAGCTCCCGCATACGC+AGG | 0.556851 | 3_1:-58802032 | Msa0365080:three_prime_UTR |
| GATGGAGGAAGTGGCCGCGG+TGG | 0.560003 | 3_1:-58804079 | Msa0365080:CDS |
| CCTGTGAAGAACAAAATTGG+TGG | 0.560358 | 3_1:+58804867 | None:intergenic |
| TATAGCTGCAGTTGCAACCC+CGG | 0.561736 | 3_1:-58804215 | Msa0365080:CDS |
| TGCGGGAGCTTTAGTGCACC+GGG | 0.564240 | 3_1:+58802040 | None:intergenic |
| ATGGAGGAAGTGGCCGCGGT+GGG | 0.564800 | 3_1:-58804078 | Msa0365080:CDS |
| ATGGGAATCTATGGTTGAAG+AGG | 0.565563 | 3_1:-58803942 | Msa0365080:CDS |
| CGAACCGGAAGAACAAGAAG+AGG | 0.566094 | 3_1:+58804642 | None:intergenic |
| CAAATCACGAAACAAATTCG+TGG | 0.567591 | 3_1:-58804920 | Msa0365080:CDS |
| CTTCAAGAGAGCTATAGAAG+TGG | 0.567749 | 3_1:-58802447 | Msa0365080:CDS |
| CTTACCACCAATACAAGAAG+AGG | 0.568408 | 3_1:-58804823 | Msa0365080:CDS |
| AGGAAGAAGAACAATAAGAA+GGG | 0.569239 | 3_1:-58804803 | Msa0365080:CDS |
| TAAAGTTGTTGTCATGTGAC+TGG | 0.570600 | 3_1:+58801913 | None:intergenic |
| GTTGATGGAGGAAGTGGCCG+CGG | 0.570618 | 3_1:-58804082 | Msa0365080:CDS |
| CGATCGAAGAAGTCTCCACC+GGG | 0.571840 | 3_1:+58804197 | None:intergenic |
| TCCGGTGAGTTTGACGACGG+AGG | 0.580178 | 3_1:+58805474 | None:intergenic |
| CGGTGGGGAGTGGATTTGAC+GGG | 0.580234 | 3_1:-58804045 | Msa0365080:CDS |
| CAACTTTACCAGTTGCGCCA+AGG | 0.585916 | 3_1:-58801898 | Msa0365080:three_prime_UTR |
| CTAAAACAAGATCAAAATTG+GGG | 0.585959 | 3_1:-58802193 | Msa0365080:three_prime_UTR |
| TTTCACTTTACAAATGAGAG+AGG | 0.591681 | 3_1:-58804407 | Msa0365080:CDS |
| TTAAAAGCTTCAGCATCTGG+TGG | 0.593464 | 3_1:+58802422 | None:intergenic |
| GGTGGATCGAAACAAATTCG+TGG | 0.595714 | 3_1:+58804885 | None:intergenic |
| GTGTACAATACACCGAATGG+TGG | 0.597059 | 3_1:+58801994 | None:intergenic |
| CCGTCAAATCCACTCCCCAC+CGG | 0.599440 | 3_1:+58804046 | None:intergenic |
| AAAACAGAAACTGAAGCTGA+AGG | 0.601124 | 3_1:-58804518 | Msa0365080:CDS |
| ACGATCGAAGAAGTCTCCAC+CGG | 0.601465 | 3_1:+58804196 | None:intergenic |
| GTTAAAAGGAAGACTTTCTG+TGG | 0.601745 | 3_1:-58805155 | Msa0365080:five_prime_UTR |
| GTGGATCGAAACAAATTCGT+GGG | 0.604278 | 3_1:+58804886 | None:intergenic |
| AAGTGGAAGTAATACCGCCT+CGG | 0.604793 | 3_1:-58804104 | Msa0365080:CDS |
| AAAGAAACTTACTCAAACGG+TGG | 0.605610 | 3_1:+58805405 | None:intergenic |
| CTAAAGCTCCCGCATACGCA+GGG | 0.605962 | 3_1:-58802031 | Msa0365080:three_prime_UTR |
| GTCATGTGACTGGAAGGTCA+CGG | 0.606021 | 3_1:+58801923 | None:intergenic |
| TCTCCACCGAGGGGTAACCT+TGG | 0.606921 | 3_1:+58801881 | None:intergenic |
| TAAAACCGGGGAAACAGAGG+TGG | 0.615486 | 3_1:-58803987 | Msa0365080:CDS |
| AAATCACGAAACAAATTCGT+GGG | 0.615554 | 3_1:-58804919 | Msa0365080:CDS |
| TCTATGGAATACTGGTGGAG+AGG | 0.619309 | 3_1:-58802279 | Msa0365080:CDS |
| GCTAGTGTTTGTGATGAAGA+TGG | 0.620714 | 3_1:+58804967 | None:intergenic |
| CGGTGGGAAATATAAACCGG+TGG | 0.621319 | 3_1:-58804062 | Msa0365080:CDS |
| AGAGGCTTATAGAAACGAAG+AGG | 0.625061 | 3_1:-58803924 | Msa0365080:CDS |
| GCCACTTCCTCCATCAACCG+AGG | 0.626638 | 3_1:+58804087 | None:intergenic |
| GTTGCGCCAAGGTTACCCCT+CGG | 0.626742 | 3_1:-58801887 | Msa0365080:three_prime_UTR |
| GGTGGGAAATATAAACCGGT+GGG | 0.628312 | 3_1:-58804061 | Msa0365080:CDS |
| ATTATCGCTGGTATAAACTC+CGG | 0.629792 | 3_1:+58804589 | None:intergenic |
| TCTTTCTTTGATCTCCACCG+AGG | 0.635521 | 3_1:+58801870 | None:intergenic |
| ATCGCTGGTATAAACTCCGG+TGG | 0.635655 | 3_1:+58804592 | None:intergenic |
| GAGGCTTATAGAAACGAAGA+GGG | 0.638175 | 3_1:-58803923 | Msa0365080:CDS |
| GTTGTTGTCATGTGACTGGA+AGG | 0.638526 | 3_1:+58801917 | None:intergenic |
| GCTGTGTACAATACACCGAA+TGG | 0.643231 | 3_1:+58801991 | None:intergenic |
| TGTACAATACACCGAATGGT+GGG | 0.646275 | 3_1:+58801995 | None:intergenic |
| AGCTGCAGTTGCAACCCCGG+TGG | 0.649417 | 3_1:-58804212 | Msa0365080:CDS |
| TTATAAAACCGGGGAAACAG+AGG | 0.656553 | 3_1:-58803990 | Msa0365080:CDS |
| GCGCCAAGGTTACCCCTCGG+TGG | 0.660383 | 3_1:-58801884 | Msa0365080:three_prime_UTR |
| ATAACATAAACCATTAACGT+TGG | 0.667251 | 3_1:+58804286 | None:intergenic |
| AATACCGCCTCGGTTGATGG+AGG | 0.677175 | 3_1:-58804094 | Msa0365080:CDS |
| TGGTGGTGTTTATAAAACCG+GGG | 0.688559 | 3_1:-58803999 | Msa0365080:CDS |
| CTCCAAATAAGTCTCTTCTG+CGG | 0.688717 | 3_1:+58802355 | None:intergenic |
| TAAAACAAGATCAAAATTGG+GGG | 0.697852 | 3_1:-58802192 | Msa0365080:three_prime_UTR |
| TATTCCGGTGAGTTTGACGA+CGG | 0.700296 | 3_1:+58805471 | None:intergenic |
| TTTCTTTGATCTCCACCGAG+GGG | 0.700711 | 3_1:+58801872 | None:intergenic |
| ACTTCCTCCATCAACCGAGG+CGG | 0.726481 | 3_1:+58804090 | None:intergenic |
| CCGGTTTATATTTCCCACCG+CGG | 0.731142 | 3_1:+58804065 | None:intergenic |
| GTGGGAAATATAAACCGGTG+GGG | 0.746911 | 3_1:-58804060 | Msa0365080:CDS |
| TGAACGAAAAGCAAACAGCG+TGG | 0.749189 | 3_1:-58804566 | Msa0365080:CDS |
| GGTGGGGAGTGGATTTGACG+GGG | 0.753129 | 3_1:-58804044 | Msa0365080:CDS |
| GATCGAAGAAGTCTCCACCG+GGG | 0.831475 | 3_1:+58804198 | None:intergenic |
| TTGGTGATGTAATATCACGG+CGG | 0.845694 | 3_1:+58805439 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTAATTTTTTTTTTCAA+TGG | - | chr3_1:58805199-58805218 | Msa0365080:intron | 10.0% |
| !!! | TTTAATTTTTTTTTTCAATG+GGG | - | chr3_1:58805201-58805220 | Msa0365080:intron | 10.0% |
| !!! | TGTTTATTTTTATTTTTTGC+AGG | - | chr3_1:58802125-58802144 | Msa0365080:three_prime_UTR | 15.0% |
| !!! | TTTTTACAAATTGGAAAAAT+TGG | + | chr3_1:58802194-58802213 | None:intergenic | 15.0% |
| !! | TTGAAAAAGAAAAAACATTA+TGG | - | chr3_1:58802268-58802287 | Msa0365080:CDS | 15.0% |
| !! | TGAAAAAGAAAAAACATTAT+GGG | - | chr3_1:58802269-58802288 | Msa0365080:CDS | 15.0% |
| !!! | TTTTTCTCTTATAATAGTAT+TGG | + | chr3_1:58804013-58804032 | None:intergenic | 15.0% |
| !!! | TTTTTTCCTTATAATAGTAT+TGG | + | chr3_1:58804046-58804065 | None:intergenic | 15.0% |
| !! | TTTAAAGAAACTTACTCAAA+CGG | + | chr3_1:58801903-58801922 | None:intergenic | 20.0% |
| !! | TTTACAAAAGCCATAAAATT+CGG | + | chr3_1:58802047-58802066 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTGCAGGTTAAA+AGG | - | chr3_1:58802133-58802152 | Msa0365080:three_prime_UTR | 20.0% |
| !!! | GATGAAACTTTTTTACAAAT+TGG | + | chr3_1:58802203-58802222 | None:intergenic | 20.0% |
| !!! | TTTTGTATGAAGATTTACAA+GGG | - | chr3_1:58802921-58802940 | Msa0365080:intron | 20.0% |
| !! | TAAAAATTGAAAAGATGCTA+TGG | + | chr3_1:58803602-58803621 | None:intergenic | 20.0% |
| !! | AGCATACTATTGAAATATAT+AGG | - | chr3_1:58803848-58803867 | Msa0365080:CDS | 20.0% |
| !! | AATTGAAAAATAGATGCTAT+TGG | - | chr3_1:58803881-58803900 | Msa0365080:CDS | 20.0% |
| !! | ATTGAAAAATAGATGCTATT+GGG | - | chr3_1:58803882-58803901 | Msa0365080:CDS | 20.0% |
| !! | AAATCACCAATACTATTATA+AGG | - | chr3_1:58804037-58804056 | Msa0365080:CDS | 20.0% |
| !! | ATGAATGAATTAACTTTACA+TGG | - | chr3_1:58804246-58804265 | Msa0365080:CDS | 20.0% |
| !!! | ATCTGATTTTATTCCATAAT+TGG | + | chr3_1:58804449-58804468 | None:intergenic | 20.0% |
| !!! | AGATTTATTATGCTATTTTG+AGG | - | chr3_1:58804465-58804484 | Msa0365080:CDS | 20.0% |
| !!! | TTTTTTCCTTCTTCTATTTT+TGG | + | chr3_1:58804500-58804519 | None:intergenic | 20.0% |
| !!! | AGTTGTATAATTGACAATTT+TGG | - | chr3_1:58804799-58804818 | Msa0365080:CDS | 20.0% |
| !!! | CTTGTTTTAGTTGATTATTA+TGG | + | chr3_1:58805099-58805118 | None:intergenic | 20.0% |
| !! | AACTAAAACAAGATCAAAAT+TGG | - | chr3_1:58805107-58805126 | Msa0365080:five_prime_UTR | 20.0% |
| !! | ACTAAAACAAGATCAAAATT+GGG | - | chr3_1:58805108-58805127 | Msa0365080:five_prime_UTR | 20.0% |
| !!! | AGTGAATCTTTTTGATTTTA+TGG | - | chr3_1:58805516-58805535 | Msa0365080:five_prime_UTR | 20.0% |
| !!! | TTTTTGGTGATGTAATATCA+CGG | + | chr3_1:58801869-58801888 | None:intergenic | 25.0% |
| ! | TAAACACACTTTAATTCTCT+TGG | - | chr3_1:58801990-58802009 | Msa0365080:three_prime_UTR | 25.0% |
| !! | CATAATTGCATTGTTTTCAT+TGG | + | chr3_1:58802609-58802628 | None:intergenic | 25.0% |
| ! | CAATGAAAACAATGCAATTA+TGG | - | chr3_1:58802607-58802626 | Msa0365080:intron | 25.0% |
| ! | AAACAATGCAATTATGGATT+TGG | - | chr3_1:58802613-58802632 | Msa0365080:intron | 25.0% |
| ! | TTTATGATTCTCAACGAAAA+CGG | + | chr3_1:58802767-58802786 | None:intergenic | 25.0% |
| ! | CTTGTAAATCTTCATACAAA+AGG | + | chr3_1:58802922-58802941 | None:intergenic | 25.0% |
| !! | CTTTTGTATGAAGATTTACA+AGG | - | chr3_1:58802920-58802939 | Msa0365080:intron | 25.0% |
| ! | ATAACATAAACCATTAACGT+TGG | + | chr3_1:58803019-58803038 | None:intergenic | 25.0% |
| ! | AAGAAGAAGAAACTAAGATA+TGG | - | chr3_1:58803341-58803360 | Msa0365080:intron | 25.0% |
| ! | AGAAGAAGAAACTAAGATAT+GGG | - | chr3_1:58803342-58803361 | Msa0365080:intron | 25.0% |
| !! | AATGAAACAATTTGTTTCAC+CGG | - | chr3_1:58803417-58803436 | Msa0365080:intron | 25.0% |
| ! | TGTTGTTATAATCCTATTGT+TGG | - | chr3_1:58803821-58803840 | Msa0365080:CDS | 25.0% |
| !! | CTCTTATAATAGTATTGGAA+GGG | + | chr3_1:58804008-58804027 | None:intergenic | 25.0% |
| !! | TCTCTTATAATAGTATTGGA+AGG | + | chr3_1:58804009-58804028 | None:intergenic | 25.0% |
| !!! | TAGTTTGTATTTTAAGCTAC+CGG | - | chr3_1:58804371-58804390 | Msa0365080:CDS | 25.0% |
| !!! | AATTTGCATTGGAGATTTTT+TGG | - | chr3_1:58804412-58804431 | Msa0365080:CDS | 25.0% |
| ! | ATCTAACCAAAAATAGAAGA+AGG | - | chr3_1:58804491-58804510 | Msa0365080:CDS | 25.0% |
| ! | TCTTGATGAATATTGAAAGA+GGG | - | chr3_1:58804537-58804556 | Msa0365080:CDS | 25.0% |
| !! | TGTATGCTTTTGAATATTCA+GGG | - | chr3_1:58804822-58804841 | Msa0365080:CDS | 25.0% |
| !! | ATTTTTCACTTTCCATAAGA+AGG | + | chr3_1:58804917-58804936 | None:intergenic | 25.0% |
| !! | GAAAGTGAAAAATGATTTGT+GGG | - | chr3_1:58804924-58804943 | Msa0365080:CDS | 25.0% |
| !! | CAAATTATGCTCATTTTCTA+TGG | - | chr3_1:58805007-58805026 | Msa0365080:CDS | 25.0% |
| ! | CTAAAACAAGATCAAAATTG+GGG | - | chr3_1:58805109-58805128 | Msa0365080:five_prime_UTR | 25.0% |
| ! | TAAAACAAGATCAAAATTGG+GGG | - | chr3_1:58805110-58805129 | Msa0365080:five_prime_UTR | 25.0% |
| !!! | ATTTTTTTTTTCAATGGGGA+TGG | - | chr3_1:58805205-58805224 | Msa0365080:intron | 25.0% |
| !!! | TTTTTTTTTTCAATGGGGAT+GGG | - | chr3_1:58805206-58805225 | Msa0365080:intron | 25.0% |
| ! | TGGAGATCAAAGAAAAAAAA+AGG | - | chr3_1:58805235-58805254 | Msa0365080:intron | 25.0% |
| ! | GGAGATCAAAGAAAAAAAAA+GGG | - | chr3_1:58805236-58805255 | Msa0365080:intron | 25.0% |
| ! | TTGTGTAAAAAAACAAGGTA+AGG | + | chr3_1:58805336-58805355 | None:intergenic | 25.0% |
| ! | TGTTATTGTTATGCAGTTAT+AGG | - | chr3_1:58805574-58805593 | Msa0365080:five_prime_UTR | 25.0% |
| CATGAGTGTGATGTATATAT+AGG | + | chr3_1:58801759-58801778 | None:intergenic | 30.0% | |
| ! | GTTATACGATCCGAATTTTA+TGG | - | chr3_1:58802034-58802053 | Msa0365080:three_prime_UTR | 30.0% |
| ! | TTCTGTGGTTTTTGTTCAAA+AGG | - | chr3_1:58802162-58802181 | Msa0365080:three_prime_UTR | 30.0% |
| ! | TCTGTGGTTTTTGTTCAAAA+GGG | - | chr3_1:58802163-58802182 | Msa0365080:three_prime_UTR | 30.0% |
| GATTGAAGAAGAAAAATCTC+AGG | + | chr3_1:58802233-58802252 | None:intergenic | 30.0% | |
| AAAAAACATTATGGGACTTG+AGG | - | chr3_1:58802277-58802296 | Msa0365080:CDS | 30.0% | |
| AAATCACGAAACAAATTCGT+GGG | - | chr3_1:58802383-58802402 | Msa0365080:CDS | 30.0% | |
| AGGAAGAAGAACAATAAGAA+GGG | - | chr3_1:58802499-58802518 | Msa0365080:intron | 30.0% | |
| ! | CATTGTTTTCATTGGAGATT+TGG | + | chr3_1:58802601-58802620 | None:intergenic | 30.0% |
| AAGGAAGAATTTAGAGATGT+TGG | - | chr3_1:58802803-58802822 | Msa0365080:intron | 30.0% | |
| !! | GAAGAAAGCTTTTTCTTCTA+TGG | - | chr3_1:58802847-58802866 | Msa0365080:intron | 30.0% |
| TTTCACTTTACAAATGAGAG+AGG | - | chr3_1:58802895-58802914 | Msa0365080:intron | 30.0% | |
| ! | AATGGTGGTGTTTATAAAAC+CGG | - | chr3_1:58803301-58803320 | Msa0365080:intron | 30.0% |
| AACTAAGATATGGGAATCTA+TGG | - | chr3_1:58803351-58803370 | Msa0365080:intron | 30.0% | |
| ! | ACAGAACTTGTTTATCAAAC+AGG | - | chr3_1:58803484-58803503 | Msa0365080:intron | 30.0% |
| ! | CAGAACTTGTTTATCAAACA+GGG | - | chr3_1:58803485-58803504 | Msa0365080:intron | 30.0% |
| ! | TTCATTTTACCTCCCAATTT+TGG | - | chr3_1:58803660-58803679 | Msa0365080:intron | 30.0% |
| GTTATAATCCTATTGTTGGT+TGG | - | chr3_1:58803825-58803844 | Msa0365080:CDS | 30.0% | |
| ATCTAGTCAATCTTATAGAC+TGG | + | chr3_1:58804125-58804144 | None:intergenic | 30.0% | |
| ATGCACTAAACAATTTGCAT+TGG | - | chr3_1:58804401-58804420 | Msa0365080:CDS | 30.0% | |
| ! | GGAGTTAAGTTTTCCAATTA+TGG | - | chr3_1:58804433-58804452 | Msa0365080:CDS | 30.0% |
| GTCTTGATGAATATTGAAAG+AGG | - | chr3_1:58804536-58804555 | Msa0365080:CDS | 30.0% | |
| CTTGATGAATATTGAAAGAG+GGG | - | chr3_1:58804538-58804557 | Msa0365080:CDS | 30.0% | |
| !!! | TATTTTCTTTTGAGACACGA+GGG | + | chr3_1:58804638-58804657 | None:intergenic | 30.0% |
| !!! | ATATTTTCTTTTGAGACACG+AGG | + | chr3_1:58804639-58804658 | None:intergenic | 30.0% |
| CTTATGAAAAATCATGTGCT+TGG | + | chr3_1:58804700-58804719 | None:intergenic | 30.0% | |
| ! | CAAGCACATGATTTTTCATA+AGG | - | chr3_1:58804698-58804717 | Msa0365080:CDS | 30.0% |
| ! | GTGTATGCTTTTGAATATTC+AGG | - | chr3_1:58804821-58804840 | Msa0365080:CDS | 30.0% |
| TTATTAAAAGCTTCAGCATC+TGG | + | chr3_1:58804886-58804905 | None:intergenic | 30.0% | |
| ATAAATACGCAACCTTCTTA+TGG | - | chr3_1:58804902-58804921 | Msa0365080:CDS | 30.0% | |
| GGAAAGTGAAAAATGATTTG+TGG | - | chr3_1:58804923-58804942 | Msa0365080:CDS | 30.0% | |
| ! | AGCATAATTTGCAGCATAAT+AGG | + | chr3_1:58804998-58805017 | None:intergenic | 30.0% |
| AAATTGGGGGAAATATATAG+AGG | - | chr3_1:58805123-58805142 | Msa0365080:five_prime_UTR | 30.0% | |
| !!! | ACCTTGTTTTTTTACACAAG+AGG | - | chr3_1:58805337-58805356 | Msa0365080:intron | 30.0% |
| GCTTCAGTCATATCGAAAAA+AGG | + | chr3_1:58801789-58801808 | None:intergenic | 35.0% | |
| AAAGAAACTTACTCAAACGG+TGG | + | chr3_1:58801900-58801919 | None:intergenic | 35.0% | |
| GTTAAAAGGAAGACTTTCTG+TGG | - | chr3_1:58802147-58802166 | Msa0365080:three_prime_UTR | 35.0% | |
| ! | TTGTTTCGTGATTTGGATGA+TGG | + | chr3_1:58802377-58802396 | None:intergenic | 35.0% |
| ! | CACGAATTTGTTTCGTGATT+TGG | + | chr3_1:58802384-58802403 | None:intergenic | 35.0% |
| CAAATCACGAAACAAATTCG+TGG | - | chr3_1:58802382-58802401 | Msa0365080:CDS | 35.0% | |
| AGACCTGTGAAGAACAAAAT+TGG | + | chr3_1:58802441-58802460 | None:intergenic | 35.0% | |
| ! | TTCTTGTATTGGTGGTAAGT+GGG | + | chr3_1:58802478-58802497 | None:intergenic | 35.0% |
| TCTTCTTCCTCTTCTTGTAT+TGG | + | chr3_1:58802489-58802508 | None:intergenic | 35.0% | |
| GAGGAAGAAGAACAATAAGA+AGG | - | chr3_1:58802498-58802517 | Msa0365080:intron | 35.0% | |
| ATTATCGCTGGTATAAACTC+CGG | + | chr3_1:58802716-58802735 | None:intergenic | 35.0% | |
| AAAACAGAAACTGAAGCTGA+AGG | - | chr3_1:58802784-58802803 | Msa0365080:intron | 35.0% | |
| ! | GATTCTTGAAAGAGTGCAAA+AGG | - | chr3_1:58802943-58802962 | Msa0365080:intron | 35.0% |
| ! | AAATGCACGCTTCTTTTGTT+TGG | - | chr3_1:58802966-58802985 | Msa0365080:intron | 35.0% |
| TTCACATACACCAACGTTAA+TGG | - | chr3_1:58803006-58803025 | Msa0365080:intron | 35.0% | |
| ! | CGTTGTTACTTGACATAGAA+TGG | + | chr3_1:58803066-58803085 | None:intergenic | 35.0% |
| AAAACGTTCTCTGTTTCAAG+TGG | - | chr3_1:58803181-58803200 | Msa0365080:intron | 35.0% | |
| ! | ATGGTGGTGTTTATAAAACC+GGG | - | chr3_1:58803302-58803321 | Msa0365080:intron | 35.0% |
| TTATAGAAACGAAGAGGGTT+TGG | - | chr3_1:58803384-58803403 | Msa0365080:intron | 35.0% | |
| GATTCAATCTTAGCAGAAAC+CGG | + | chr3_1:58803439-58803458 | None:intergenic | 35.0% | |
| !! | GCAAGTAACAAAGCATTGTT+TGG | + | chr3_1:58803523-58803542 | None:intergenic | 35.0% |
| CCAATGAAGCTACCAAAATT+GGG | + | chr3_1:58803675-58803694 | None:intergenic | 35.0% | |
| ACCAATGAAGCTACCAAAAT+TGG | + | chr3_1:58803676-58803695 | None:intergenic | 35.0% | |
| TGTTTAGTGCATCTAGAAAC+CGG | + | chr3_1:58804393-58804412 | None:intergenic | 35.0% | |
| AATATTGAAAGAGGGGTTTG+CGG | - | chr3_1:58804545-58804564 | Msa0365080:CDS | 35.0% | |
| ! | GCTCATTTTCTATGGAATAC+TGG | - | chr3_1:58805015-58805034 | Msa0365080:CDS | 35.0% |
| ! | CATTTTCTATGGAATACTGG+TGG | - | chr3_1:58805018-58805037 | Msa0365080:CDS | 35.0% |
| TCTTGAGAAGAATCAGATAG+AGG | + | chr3_1:58805060-58805079 | None:intergenic | 35.0% | |
| AAGAAAAAAAAAGGGCAACC+CGG | - | chr3_1:58805244-58805263 | Msa0365080:intron | 35.0% | |
| GCCTCTTGTGTAAAAAAACA+AGG | + | chr3_1:58805341-58805360 | None:intergenic | 35.0% | |
| TAAAGTTGTTGTCATGTGAC+TGG | + | chr3_1:58805392-58805411 | None:intergenic | 35.0% | |
| !! | TTGGTGATGTAATATCACGG+CGG | + | chr3_1:58801866-58801885 | None:intergenic | 40.0% |
| !!! | AACGGTGGTGGAAATGTTTT+TGG | + | chr3_1:58801885-58801904 | None:intergenic | 40.0% |
| TGGTGTTTGTCACTCGTTTA+GGG | + | chr3_1:58801947-58801966 | None:intergenic | 40.0% | |
| GCTAGTGTTTGTGATGAAGA+TGG | + | chr3_1:58802338-58802357 | None:intergenic | 40.0% | |
| GTGGATCGAAACAAATTCGT+GGG | + | chr3_1:58802419-58802438 | None:intergenic | 40.0% | |
| CCTGTGAAGAACAAAATTGG+TGG | + | chr3_1:58802438-58802457 | None:intergenic | 40.0% | |
| ! | CCACCAATTTTGTTCTTCAC+AGG | - | chr3_1:58802435-58802454 | Msa0365080:CDS | 40.0% |
| ! | CTTCTTGTATTGGTGGTAAG+TGG | + | chr3_1:58802479-58802498 | None:intergenic | 40.0% |
| CTTACCACCAATACAAGAAG+AGG | - | chr3_1:58802479-58802498 | Msa0365080:intron | 40.0% | |
| TCTTCCTCTTCTTGTATTGG+TGG | + | chr3_1:58802486-58802505 | None:intergenic | 40.0% | |
| ACTTCCTCTTCTTGTTCTTC+CGG | - | chr3_1:58802656-58802675 | Msa0365080:intron | 40.0% | |
| ! | GCTTTTCGTTCAATTATCGC+TGG | + | chr3_1:58802728-58802747 | None:intergenic | 40.0% |
| ! | TGGTGGTGTTTATAAAACCG+GGG | - | chr3_1:58803303-58803322 | Msa0365080:intron | 40.0% |
| TTATAAAACCGGGGAAACAG+AGG | - | chr3_1:58803312-58803331 | Msa0365080:intron | 40.0% | |
| ATGGGAATCTATGGTTGAAG+AGG | - | chr3_1:58803360-58803379 | Msa0365080:intron | 40.0% | |
| AGAGGCTTATAGAAACGAAG+AGG | - | chr3_1:58803378-58803397 | Msa0365080:intron | 40.0% | |
| GAGGCTTATAGAAACGAAGA+GGG | - | chr3_1:58803379-58803398 | Msa0365080:intron | 40.0% | |
| TCGTTGCACATGAATTTGAC+AGG | - | chr3_1:58803566-58803585 | Msa0365080:intron | 40.0% | |
| ATGAAGCTACCAAAATTGGG+AGG | + | chr3_1:58803672-58803691 | None:intergenic | 40.0% | |
| !! | CCCAATTTTGGTAGCTTCAT+TGG | - | chr3_1:58803672-58803691 | Msa0365080:intron | 40.0% |
| AGTATGCTCCAACCAACAAT+AGG | + | chr3_1:58803836-58803855 | None:intergenic | 40.0% | |
| ! | ATAAGTCTGGCTCATGAATC+AGG | + | chr3_1:58804594-58804613 | None:intergenic | 40.0% |
| GGAGGAGAAGTAAATAAGTC+TGG | + | chr3_1:58804607-58804626 | None:intergenic | 40.0% | |
| CTTCAAGAGAGCTATAGAAG+TGG | - | chr3_1:58804855-58804874 | Msa0365080:CDS | 40.0% | |
| TTAAAAGCTTCAGCATCTGG+TGG | + | chr3_1:58804883-58804902 | None:intergenic | 40.0% | |
| CTCCAAATAAGTCTCTTCTG+CGG | + | chr3_1:58804950-58804969 | None:intergenic | 40.0% | |
| TGTACAATACACCGAATGGT+GGG | + | chr3_1:58805310-58805329 | None:intergenic | 40.0% | |
| TATTCCGGTGAGTTTGACGA+CGG | + | chr3_1:58801834-58801853 | None:intergenic | 45.0% | |
| GAAACTTACTCAAACGGTGG+TGG | + | chr3_1:58801897-58801916 | None:intergenic | 45.0% | |
| GTGGTGTTTGTCACTCGTTT+AGG | + | chr3_1:58801948-58801967 | None:intergenic | 45.0% | |
| GGATCGTATAACAAAGCTCG+AGG | + | chr3_1:58802026-58802045 | None:intergenic | 45.0% | |
| GGTGGATCGAAACAAATTCG+TGG | + | chr3_1:58802420-58802439 | None:intergenic | 45.0% | |
| TCTTCACAGGTCTCGATCTT+TGG | - | chr3_1:58802448-58802467 | Msa0365080:CDS | 45.0% | |
| ! | TGCCGTTAATTTTGAGCCAC+CGG | - | chr3_1:58802694-58802713 | Msa0365080:intron | 45.0% |
| CTCCGGTGGCTCAAAATTAA+CGG | + | chr3_1:58802699-58802718 | None:intergenic | 45.0% | |
| TGAACGAAAAGCAAACAGCG+TGG | - | chr3_1:58802736-58802755 | Msa0365080:intron | 45.0% | |
| AAGTGGAAGTAATACCGCCT+CGG | - | chr3_1:58803198-58803217 | Msa0365080:intron | 45.0% | |
| GGTGGGAAATATAAACCGGT+GGG | - | chr3_1:58803241-58803260 | Msa0365080:intron | 45.0% | |
| GTGGGAAATATAAACCGGTG+GGG | - | chr3_1:58803242-58803261 | Msa0365080:intron | 45.0% | |
| AAATATAAACCGGTGGGGAG+TGG | - | chr3_1:58803247-58803266 | Msa0365080:intron | 45.0% | |
| !! | GGACGAACGGGTTTTTCTAA+TGG | - | chr3_1:58803283-58803302 | Msa0365080:intron | 45.0% |
| !! | CGAACGGGTTTTTCTAATGG+TGG | - | chr3_1:58803286-58803305 | Msa0365080:intron | 45.0% |
| ATGTGCTTGGTACGACTGAA+AGG | + | chr3_1:58804687-58804706 | None:intergenic | 45.0% | |
| CGCAGAAGAGACTTATTTGG+AGG | - | chr3_1:58804948-58804967 | Msa0365080:CDS | 45.0% | |
| !! | GCAGCATAATAGGTGTTGCT+AGG | + | chr3_1:58804988-58805007 | None:intergenic | 45.0% |
| TCTATGGAATACTGGTGGAG+AGG | - | chr3_1:58805023-58805042 | Msa0365080:exon | 45.0% | |
| !!! | TTTTCAATGGGGATGGGTTG+AGG | - | chr3_1:58805212-58805231 | Msa0365080:intron | 45.0% |
| GTGTACAATACACCGAATGG+TGG | + | chr3_1:58805311-58805330 | None:intergenic | 45.0% | |
| GCTGTGTACAATACACCGAA+TGG | + | chr3_1:58805314-58805333 | None:intergenic | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | chr3_1:58805348-58805367 | Msa0365080:intron | 45.0% |
| GTTGTTGTCATGTGACTGGA+AGG | + | chr3_1:58805388-58805407 | None:intergenic | 45.0% | |
| TTTCTTTGATCTCCACCGAG+GGG | + | chr3_1:58805433-58805452 | None:intergenic | 45.0% | |
| CTTTCTTTGATCTCCACCGA+GGG | + | chr3_1:58805434-58805453 | None:intergenic | 45.0% | |
| TCTTTCTTTGATCTCCACCG+AGG | + | chr3_1:58805435-58805454 | None:intergenic | 45.0% | |
| !!! | TTTTAATTTTTTTTTTCAAT+GGG | - | chr3_1:58805200-58805219 | Msa0365080:intron | 5.0% |
| GTCTGTGTGTGAGTTTCAGG+TGG | + | chr3_1:58801967-58801986 | None:intergenic | 50.0% | |
| CGAACCGGAAGAACAAGAAG+AGG | + | chr3_1:58802663-58802682 | None:intergenic | 50.0% | |
| ! | TCTTGTTCTTCCGGTTCGTC+TGG | - | chr3_1:58802665-58802684 | Msa0365080:intron | 50.0% |
| ATCGCTGGTATAAACTCCGG+TGG | + | chr3_1:58802713-58802732 | None:intergenic | 50.0% | |
| TATAGCTGCAGTTGCAACCC+CGG | - | chr3_1:58803087-58803106 | Msa0365080:intron | 50.0% | |
| ACGATCGAAGAAGTCTCCAC+CGG | + | chr3_1:58803109-58803128 | None:intergenic | 50.0% | |
| AGTAATACCGCCTCGGTTGA+TGG | - | chr3_1:58803205-58803224 | Msa0365080:intron | 50.0% | |
| CCGGTTTATATTTCCCACCG+CGG | + | chr3_1:58803240-58803259 | None:intergenic | 50.0% | |
| CCGCGGTGGGAAATATAAAC+CGG | - | chr3_1:58803237-58803256 | Msa0365080:intron | 50.0% | |
| CGGTGGGAAATATAAACCGG+TGG | - | chr3_1:58803240-58803259 | Msa0365080:intron | 50.0% | |
| ATTTGACGGGGATGGACGAA+CGG | - | chr3_1:58803270-58803289 | Msa0365080:intron | 50.0% | |
| TAAAACCGGGGAAACAGAGG+TGG | - | chr3_1:58803315-58803334 | Msa0365080:intron | 50.0% | |
| TTCATCCACCTCTGTTTCCC+CGG | + | chr3_1:58803323-58803342 | None:intergenic | 50.0% | |
| GGCTCATGAATCAGGTACAC+TGG | + | chr3_1:58804586-58804605 | None:intergenic | 50.0% | |
| GGCCGCAGAAGAGACTTATT+TGG | - | chr3_1:58804945-58804964 | Msa0365080:CDS | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | + | chr3_1:58805381-58805400 | None:intergenic | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | + | chr3_1:58805382-58805401 | None:intergenic | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | chr3_1:58805404-58805423 | Msa0365080:intron | 50.0% | |
| TCCTCCGTCGTCAAACTCAC+CGG | - | chr3_1:58801827-58801846 | Msa0365080:three_prime_UTR | 55.0% | |
| CGGCGGCAGAGAGATTATTC+CGG | + | chr3_1:58801849-58801868 | None:intergenic | 55.0% | |
| CGCGTCTGTGTGTGAGTTTC+AGG | + | chr3_1:58801970-58801989 | None:intergenic | 55.0% | |
| GGCATGAGAACCAGACGAAC+CGG | + | chr3_1:58802678-58802697 | None:intergenic | 55.0% | |
| GATCGAAGAAGTCTCCACCG+GGG | + | chr3_1:58803107-58803126 | None:intergenic | 55.0% | |
| CGATCGAAGAAGTCTCCACC+GGG | + | chr3_1:58803108-58803127 | None:intergenic | 55.0% | |
| !! | AATACCGCCTCGGTTGATGG+AGG | - | chr3_1:58803208-58803227 | Msa0365080:intron | 55.0% |
| ACTTCCTCCATCAACCGAGG+CGG | + | chr3_1:58803215-58803234 | None:intergenic | 55.0% | |
| TTTGACGGGGATGGACGAAC+GGG | - | chr3_1:58803271-58803290 | Msa0365080:intron | 55.0% | |
| !! | TCAATGGGGATGGGTTGAGG+TGG | - | chr3_1:58805215-58805234 | Msa0365080:intron | 55.0% |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | chr3_1:58805266-58805285 | None:intergenic | 55.0% |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr3_1:58805270-58805289 | Msa0365080:intron | 55.0% | |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr3_1:58805271-58805290 | Msa0365080:intron | 55.0% | |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr3_1:58805369-58805388 | None:intergenic | 55.0% | |
| TCCGGTGAGTTTGACGACGG+AGG | + | chr3_1:58801831-58801850 | None:intergenic | 60.0% | |
| !! | GCCTCGGTTGATGGAGGAAG+TGG | - | chr3_1:58803214-58803233 | Msa0365080:intron | 60.0% |
| GCCACTTCCTCCATCAACCG+AGG | + | chr3_1:58803218-58803237 | None:intergenic | 60.0% | |
| ! | GTTGATGGAGGAAGTGGCCG+CGG | - | chr3_1:58803220-58803239 | Msa0365080:intron | 60.0% |
| CCGTCAAATCCACTCCCCAC+CGG | + | chr3_1:58803259-58803278 | None:intergenic | 60.0% | |
| ! | CCGGTGGGGAGTGGATTTGA+CGG | - | chr3_1:58803256-58803275 | Msa0365080:intron | 60.0% |
| ! | CGGTGGGGAGTGGATTTGAC+GGG | - | chr3_1:58803257-58803276 | Msa0365080:intron | 60.0% |
| ! | GGTGGGGAGTGGATTTGACG+GGG | - | chr3_1:58803258-58803277 | Msa0365080:intron | 60.0% |
| ! | GGGAGTGGATTTGACGGGGA+TGG | - | chr3_1:58803262-58803281 | Msa0365080:intron | 60.0% |
| !! | TGAGACACGAGGGCATCACG+TGG | + | chr3_1:58804628-58804647 | None:intergenic | 60.0% |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | chr3_1:58805265-58805284 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | chr3_1:58805415-58805434 | None:intergenic | 60.0% | |
| GTTGCGCCAAGGTTACCCCT+CGG | - | chr3_1:58805415-58805434 | Msa0365080:intron | 60.0% | |
| TCTCCACCGAGGGGTAACCT+TGG | + | chr3_1:58805424-58805443 | None:intergenic | 60.0% | |
| AGCTGCAGTTGCAACCCCGG+TGG | - | chr3_1:58803090-58803109 | Msa0365080:intron | 65.0% | |
| ATGGAGGAAGTGGCCGCGGT+GGG | - | chr3_1:58803224-58803243 | Msa0365080:intron | 65.0% | |
| !! | GACACGAGGGCATCACGTGG+AGG | + | chr3_1:58804625-58804644 | None:intergenic | 65.0% |
| TTCCCGGACCCTGCGTATGC+GGG | + | chr3_1:58805282-58805301 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | + | chr3_1:58805283-58805302 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr3_1:58805282-58805301 | Msa0365080:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr3_1:58805283-58805302 | Msa0365080:intron | 65.0% | |
| ! | CGAATGGTGGGACCCCTTCC+CGG | + | chr3_1:58805298-58805317 | None:intergenic | 65.0% |
| CGGGAAGGGGTCCCACCATT+CGG | - | chr3_1:58805296-58805315 | Msa0365080:intron | 65.0% | |
| GATGGAGGAAGTGGCCGCGG+TGG | - | chr3_1:58803223-58803242 | Msa0365080:intron | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | - | chr3_1:58805276-58805295 | Msa0365080:intron | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | - | chr3_1:58805277-58805296 | Msa0365080:intron | 70.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | - | chr3_1:58805281-58805300 | Msa0365080:intron | 70.0% | |
| GCGCCAAGGTTACCCCTCGG+TGG | - | chr3_1:58805418-58805437 | Msa0365080:five_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 58801721 | 58805603 | 58801721 | ID=Msa0365080;Name=Msa0365080 |
| chr3_1 | mRNA | 58801721 | 58805603 | 58801721 | ID=Msa0365080-mRNA-1;Parent=Msa0365080;Name=Msa0365080-mRNA-1;_AED=0.07;_eAED=0.07;_QI=327|1|1|1|0.5|0.33|3|517|514 |
| chr3_1 | exon | 58801721 | 58802481 | 58801721 | ID=Msa0365080-mRNA-1:exon:11173;Parent=Msa0365080-mRNA-1 |
| chr3_1 | exon | 58803737 | 58805177 | 58803737 | ID=Msa0365080-mRNA-1:exon:11172;Parent=Msa0365080-mRNA-1 |
| chr3_1 | exon | 58805417 | 58805603 | 58805417 | ID=Msa0365080-mRNA-1:exon:11171;Parent=Msa0365080-mRNA-1 |
| chr3_1 | five_prime_UTR | 58805417 | 58805603 | 58805417 | ID=Msa0365080-mRNA-1:five_prime_utr;Parent=Msa0365080-mRNA-1 |
| chr3_1 | five_prime_UTR | 58805038 | 58805177 | 58805038 | ID=Msa0365080-mRNA-1:five_prime_utr;Parent=Msa0365080-mRNA-1 |
| chr3_1 | CDS | 58803737 | 58805037 | 58803737 | ID=Msa0365080-mRNA-1:cds;Parent=Msa0365080-mRNA-1 |
| chr3_1 | CDS | 58802238 | 58802481 | 58802238 | ID=Msa0365080-mRNA-1:cds;Parent=Msa0365080-mRNA-1 |
| chr3_1 | three_prime_UTR | 58801721 | 58802237 | 58801721 | ID=Msa0365080-mRNA-1:three_prime_utr;Parent=Msa0365080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
