Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627080 | XP_003604378.1 | 100.000 | 211 | 0 | 0 | 1 | 211 | 1 | 211 | 5.52e-155 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627080 | sp|Q9LVZ8|LOR12_ARATH | 56.459 | 209 | 87 | 2 | 3 | 211 | 16 | 220 | 9.96e-83 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0627080 | Msa0796950 | 0.813889 | 2.037079e-51 | -8.615850e-47 |
| Msa0627080 | Msa1113210 | 0.805903 | 1.066159e-49 | -8.615850e-47 |
| Msa0365080 | Msa0627080 | 0.831735 | 1.410278e-55 | -8.615850e-47 |
| Msa0404220 | Msa0627080 | 0.812913 | 3.337752e-51 | -8.615850e-47 |
| Msa0412760 | Msa0627080 | 0.852873 | 3.469674e-61 | -8.615850e-47 |
| Msa0445700 | Msa0627080 | 0.832705 | 8.115438e-56 | -8.615850e-47 |
| Msa0530380 | Msa0627080 | 0.845248 | 4.570343e-59 | -8.615850e-47 |
| Msa0587290 | Msa0627080 | 0.830927 | 2.228546e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627080 | MtrunA17_Chr4g0003271 | 100.000 | 211 | 0 | 0 | 1 | 211 | 1 | 211 | 5.08e-159 | 437 |
| Msa0627080 | MtrunA17_Chr2g0333101 | 69.194 | 211 | 64 | 1 | 2 | 211 | 13 | 223 | 4.83e-106 | 304 |
| Msa0627080 | MtrunA17_Chr2g0333111 | 66.507 | 209 | 69 | 1 | 4 | 211 | 16 | 224 | 9.62e-105 | 301 |
| Msa0627080 | MtrunA17_Chr8g0387561 | 35.938 | 192 | 101 | 4 | 18 | 190 | 43 | 231 | 3.81e-29 | 108 |
| Msa0627080 | MtrunA17_Chr7g0244331 | 29.947 | 187 | 125 | 5 | 11 | 194 | 27 | 210 | 3.72e-26 | 100 |
| Msa0627080 | MtrunA17_Chr8g0345091 | 32.418 | 182 | 116 | 4 | 16 | 193 | 20 | 198 | 1.14e-25 | 98.6 |
| Msa0627080 | MtrunA17_Chr7g0244341 | 29.032 | 186 | 126 | 5 | 11 | 193 | 27 | 209 | 1.23e-23 | 94.0 |
| Msa0627080 | MtrunA17_Chr7g0244371 | 27.895 | 190 | 130 | 6 | 7 | 193 | 22 | 207 | 4.43e-23 | 92.4 |
| Msa0627080 | MtrunA17_Chr7g0244321 | 28.804 | 184 | 125 | 5 | 11 | 191 | 27 | 207 | 6.21e-23 | 92.0 |
| Msa0627080 | MtrunA17_Chr2g0300771 | 29.665 | 209 | 130 | 7 | 1 | 196 | 1 | 205 | 7.77e-22 | 89.0 |
| Msa0627080 | MtrunA17_Chr4g0013291 | 26.667 | 195 | 129 | 7 | 2 | 191 | 10 | 195 | 5.42e-19 | 81.3 |
| Msa0627080 | MtrunA17_Chr7g0244361 | 25.000 | 196 | 128 | 6 | 7 | 190 | 47 | 235 | 5.40e-18 | 79.3 |
| Msa0627080 | MtrunA17_Chr7g0244111 | 25.833 | 120 | 83 | 4 | 79 | 194 | 5 | 122 | 2.83e-13 | 64.3 |
| Msa0627080 | MtrunA17_Chr8g0386611 | 28.495 | 186 | 118 | 8 | 15 | 193 | 27 | 204 | 9.85e-12 | 61.6 |
| Msa0627080 | MtrunA17_Chr8g0386591 | 27.778 | 180 | 116 | 7 | 21 | 193 | 32 | 204 | 1.01e-11 | 61.6 |
| Msa0627080 | MtrunA17_Chr1g0150081 | 22.581 | 186 | 135 | 6 | 7 | 188 | 5 | 185 | 6.69e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0627080 | AT3G15810.1 | 56.459 | 209 | 87 | 2 | 3 | 211 | 16 | 220 | 1.01e-83 | 248 |
| Msa0627080 | AT1G80120.1 | 62.679 | 209 | 71 | 5 | 6 | 211 | 5 | 209 | 1.25e-78 | 234 |
| Msa0627080 | AT2G38640.1 | 39.888 | 178 | 100 | 4 | 15 | 190 | 20 | 192 | 1.85e-30 | 111 |
| Msa0627080 | AT5G41590.1 | 37.297 | 185 | 102 | 7 | 18 | 190 | 37 | 219 | 5.13e-23 | 92.8 |
| Msa0627080 | AT5G01750.2 | 27.604 | 192 | 133 | 5 | 6 | 194 | 26 | 214 | 1.31e-20 | 86.3 |
| Msa0627080 | AT5G20640.1 | 30.049 | 203 | 125 | 6 | 7 | 194 | 12 | 212 | 2.15e-20 | 85.5 |
| Msa0627080 | AT2G05910.1 | 27.041 | 196 | 128 | 5 | 5 | 194 | 2 | 188 | 1.03e-19 | 83.2 |
| Msa0627080 | AT3G11740.1 | 26.816 | 179 | 124 | 4 | 20 | 194 | 16 | 191 | 2.60e-19 | 82.4 |
| Msa0627080 | AT1G53875.1 | 28.571 | 182 | 114 | 5 | 12 | 186 | 48 | 220 | 4.44e-17 | 77.0 |
| Msa0627080 | AT1G33840.1 | 24.084 | 191 | 135 | 3 | 6 | 191 | 26 | 211 | 1.27e-15 | 73.2 |
| Msa0627080 | AT1G63410.1 | 27.083 | 192 | 127 | 5 | 5 | 192 | 7 | 189 | 3.63e-13 | 65.9 |
| Msa0627080 | AT3G16900.1 | 25.397 | 189 | 114 | 8 | 7 | 191 | 15 | 180 | 1.56e-11 | 61.2 |
| Msa0627080 | AT2G14560.1 | 22.115 | 208 | 150 | 5 | 1 | 202 | 1 | 202 | 3.81e-11 | 60.5 |
| Msa0627080 | AT2G14560.3 | 22.115 | 208 | 150 | 5 | 1 | 202 | 61 | 262 | 8.50e-11 | 60.5 |
Find 71 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATAGTTCTTCTCTATTTA+AGG | 0.079515 | 4_3:+7168297 | Msa0627080:five_prime_UTR |
| TATGAATGACATTAATAAAA+TGG | 0.193929 | 4_3:+7170468 | Msa0627080:three_prime_UTR |
| GGTGAGAATTTCTTTGATAA+TGG | 0.240720 | 4_3:+7170338 | Msa0627080:CDS |
| ATATATCACCTACTAGAATA+TGG | 0.261526 | 4_3:-7170597 | None:intergenic |
| GACATTAATAAAATGGTTAA+TGG | 0.266723 | 4_3:+7170475 | Msa0627080:three_prime_UTR |
| CTTTGCCATGGGATTGGTTT+TGG | 0.269542 | 4_3:+7170298 | Msa0627080:CDS |
| GTGAGAATTTCTTTGATAAT+GGG | 0.336997 | 4_3:+7170339 | Msa0627080:CDS |
| ATTCATCAATCTTCTGTAGT+AGG | 0.340424 | 4_3:-7170383 | None:intergenic |
| CTCAGCCACTAATTTCTTTG+TGG | 0.371663 | 4_3:-7170189 | None:intergenic |
| TACATGCTTCAAATATATAT+TGG | 0.382357 | 4_3:+7170532 | Msa0627080:three_prime_UTR |
| GTTTGTTGTGTATGATTGTA+AGG | 0.389745 | 4_3:+7168514 | Msa0627080:CDS |
| TAATGCCACAAAGAAATTAG+TGG | 0.399710 | 4_3:+7170184 | Msa0627080:CDS |
| ATATATATTTGAAGCATGTA+TGG | 0.406899 | 4_3:-7170529 | None:intergenic |
| AAAATCTTACAGCATCTTTG+TGG | 0.417016 | 4_3:-7170161 | None:intergenic |
| TCTTCCTTATCACGTGTGTT+TGG | 0.423689 | 4_3:-7168569 | None:intergenic |
| TTACAGTTCTGAAAACATCT+AGG | 0.431194 | 4_3:+7168474 | Msa0627080:CDS |
| TATATCACCTACTAGAATAT+GGG | 0.432435 | 4_3:-7170596 | None:intergenic |
| TTGGTACTTGATCAAATCAA+TGG | 0.444060 | 4_3:+7170317 | Msa0627080:CDS |
| TGTGTCCTTTGCCATGGGAT+TGG | 0.448534 | 4_3:+7170292 | Msa0627080:CDS |
| AAATCTTACAGCATCTTTGT+GGG | 0.461184 | 4_3:-7170160 | None:intergenic |
| AAAAGAATATTTATTGAGCT+GGG | 0.463914 | 4_3:-7168197 | None:intergenic |
| TCTTCTCACCTTGCGTAGAA+AGG | 0.467170 | 4_3:+7168622 | Msa0627080:CDS |
| GCAAAGGACACATCAAAATC+AGG | 0.471041 | 4_3:-7170281 | None:intergenic |
| GATAATCCCCATATTCTAGT+AGG | 0.472194 | 4_3:+7170589 | Msa0627080:three_prime_UTR |
| TGGACCAAACACACGTGATA+AGG | 0.488839 | 4_3:+7168565 | Msa0627080:CDS |
| TCCCATCGTTGATGAAGACT+TGG | 0.494963 | 4_3:-7169996 | None:intergenic |
| TGTGAAGATGAATAAGTTGA+AGG | 0.503415 | 4_3:-7168368 | None:intergenic |
| ATCGTGTACCTCCACTGTTA+TGG | 0.509066 | 4_3:-7170102 | None:intergenic |
| TTGGTCCATACGAGTCAAAC+CGG | 0.510635 | 4_3:-7168550 | None:intergenic |
| GCTTCAAATATATATTGGTA+TGG | 0.511822 | 4_3:+7170537 | Msa0627080:three_prime_UTR |
| TTTGATGTGTCCTTTGCCAT+GGG | 0.516078 | 4_3:+7170287 | Msa0627080:CDS |
| CTGGGAAAATATTGTAAAGG+AGG | 0.523625 | 4_3:-7168179 | None:intergenic |
| AAGGAAGCACAAATTAAAAG+AGG | 0.523802 | 4_3:-7170439 | None:intergenic |
| GAGCTGGGAAAATATTGTAA+AGG | 0.531777 | 4_3:-7168182 | None:intergenic |
| TTCATCAATCTTCTGTAGTA+GGG | 0.533840 | 4_3:-7170382 | None:intergenic |
| GGTGTGGAGTACCTCATTGA+AGG | 0.534346 | 4_3:+7170131 | Msa0627080:CDS |
| TCAATGAGGTACTCCACACC+TGG | 0.537802 | 4_3:-7170128 | None:intergenic |
| AGGGTGCACCGAGGTTTCAA+TGG | 0.544254 | 4_3:-7170363 | None:intergenic |
| GAAAATATTGTAAAGGAGGG+TGG | 0.551890 | 4_3:-7168175 | None:intergenic |
| CAACGATGGGAAGGATTCAA+AGG | 0.560825 | 4_3:+7170008 | Msa0627080:CDS |
| ACCAAGCATAACACTAGTGG+TGG | 0.565653 | 4_3:-7170231 | None:intergenic |
| TGTATGGCTTGAAATTTGAA+AGG | 0.574221 | 4_3:-7170513 | None:intergenic |
| AACCAAGTCTTCATCAACGA+TGG | 0.577300 | 4_3:+7169994 | Msa0627080:CDS |
| TTTGTTGTGTATGATTGTAA+GGG | 0.578513 | 4_3:+7168515 | Msa0627080:CDS |
| TTCAAAGGAGAGAGAAAAGA+CGG | 0.580588 | 4_3:+7170023 | Msa0627080:CDS |
| AGTGGCTGAGATTCGTCGTA+AGG | 0.580670 | 4_3:+7170202 | Msa0627080:CDS |
| AGTACATACCTTTCTACGCA+AGG | 0.584776 | 4_3:-7168630 | None:intergenic |
| ACCAAGTCTTCATCAACGAT+GGG | 0.589490 | 4_3:+7169995 | Msa0627080:CDS |
| AATGTCATTCATACAAACAA+AGG | 0.590930 | 4_3:-7170458 | None:intergenic |
| CCCACCACTAGTGTTATGCT+TGG | 0.591048 | 4_3:+7170230 | Msa0627080:CDS |
| GGCTGAGATTCGTCGTAAGG+TGG | 0.591532 | 4_3:+7170205 | Msa0627080:CDS |
| GTGTGGAGTACCTCATTGAA+GGG | 0.603117 | 4_3:+7170132 | Msa0627080:CDS |
| ATATCACCTACTAGAATATG+GGG | 0.614111 | 4_3:-7170595 | None:intergenic |
| CTTGTTCTTATGAACACACA+TGG | 0.616126 | 4_3:+7168593 | Msa0627080:CDS |
| TGGGAAAATATTGTAAAGGA+GGG | 0.616746 | 4_3:-7168178 | None:intergenic |
| TAATGGGACCATTGAAACCT+CGG | 0.618557 | 4_3:+7170355 | Msa0627080:CDS |
| GTGGGAAACACCCTTCAATG+AGG | 0.622701 | 4_3:-7170142 | None:intergenic |
| AGGAAGCACAAATTAAAAGA+GGG | 0.625201 | 4_3:-7170438 | None:intergenic |
| TTTACCAAGCATAACACTAG+TGG | 0.625648 | 4_3:-7170234 | None:intergenic |
| AGTCTTCATCAACGATGGGA+AGG | 0.627932 | 4_3:+7169999 | Msa0627080:CDS |
| AAGTACCAAAACCAATCCCA+TGG | 0.637046 | 4_3:-7170303 | None:intergenic |
| AAAGATCTTCAATAATCGCA+CGG | 0.646246 | 4_3:+7170069 | Msa0627080:CDS |
| CAAGCATAACACTAGTGGTG+GGG | 0.647075 | 4_3:-7170229 | None:intergenic |
| CAAAACCAATCCCATGGCAA+AGG | 0.650353 | 4_3:-7170297 | None:intergenic |
| CCAAGCATAACACTAGTGGT+GGG | 0.663464 | 4_3:-7170230 | None:intergenic |
| GGTACACGATAACCCAGGTG+TGG | 0.667191 | 4_3:+7170115 | Msa0627080:CDS |
| AAGAATGACCATAACAGTGG+AGG | 0.694861 | 4_3:+7170094 | Msa0627080:CDS |
| GTCAAGAATGACCATAACAG+TGG | 0.699668 | 4_3:+7170091 | Msa0627080:CDS |
| CAATGAGGTACTCCACACCT+GGG | 0.718093 | 4_3:-7170127 | None:intergenic |
| TTCTGTAGTAGGGTGCACCG+AGG | 0.725146 | 4_3:-7170372 | None:intergenic |
| GTGGAGGTACACGATAACCC+AGG | 0.734091 | 4_3:+7170110 | Msa0627080:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAAATATTTATTTAAGTG+TGG | - | chr4_3:7169577-7169596 | None:intergenic | 10.0% |
| !!! | ATGTATTTTTAGTTTACAAT+CGG | + | chr4_3:7169152-7169171 | Msa0627080:intron | 15.0% |
| !!! | AAGATTTTTTTTATGTGAAT+CGG | - | chr4_3:7169442-7169461 | None:intergenic | 15.0% |
| !! | TATGAATGACATTAATAAAA+TGG | + | chr4_3:7170468-7170487 | Msa0627080:three_prime_UTR | 15.0% |
| !! | AAAAGAATATTTATTGAGCT+GGG | - | chr4_3:7168200-7168219 | None:intergenic | 20.0% |
| !! | AAAAAGAATATTTATTGAGC+TGG | - | chr4_3:7168201-7168220 | None:intergenic | 20.0% |
| !!! | TTTTTATTTTGTGCTGTAAA+GGG | - | chr4_3:7168266-7168285 | None:intergenic | 20.0% |
| !!! | TGGAAGATATATTTTGTTAT+TGG | + | chr4_3:7169064-7169083 | Msa0627080:intron | 20.0% |
| !!! | GGAAGATATATTTTGTTATT+GGG | + | chr4_3:7169065-7169084 | Msa0627080:intron | 20.0% |
| !! | TTGAATATACAACTGAATTT+GGG | + | chr4_3:7169216-7169235 | Msa0627080:intron | 20.0% |
| !! | GACATTAATAAAATGGTTAA+TGG | + | chr4_3:7170475-7170494 | Msa0627080:three_prime_UTR | 20.0% |
| !!! | ATATATATTTGAAGCATGTA+TGG | - | chr4_3:7170532-7170551 | None:intergenic | 20.0% |
| !! | TACATGCTTCAAATATATAT+TGG | + | chr4_3:7170532-7170551 | Msa0627080:three_prime_UTR | 20.0% |
| !!! | CTTTTTATTTTGTGCTGTAA+AGG | - | chr4_3:7168267-7168286 | None:intergenic | 25.0% |
| ! | CAATAGTTCTTCTCTATTTA+AGG | + | chr4_3:7168297-7168316 | Msa0627080:five_prime_UTR | 25.0% |
| !! | TTTGTTGTGTATGATTGTAA+GGG | + | chr4_3:7168515-7168534 | Msa0627080:CDS | 25.0% |
| !! | TTCTTTTTGTGTTCTGTAAT+TGG | + | chr4_3:7168671-7168690 | Msa0627080:intron | 25.0% |
| ! | GTTGAATATACAACTGAATT+TGG | + | chr4_3:7169215-7169234 | Msa0627080:intron | 25.0% |
| ! | ATCTTGAAAAAGAGTGATTA+AGG | - | chr4_3:7169550-7169569 | None:intergenic | 25.0% |
| !! | GTGAGAATTTCTTTGATAAT+GGG | + | chr4_3:7170339-7170358 | Msa0627080:CDS | 25.0% |
| ! | AATGTCATTCATACAAACAA+AGG | - | chr4_3:7170461-7170480 | None:intergenic | 25.0% |
| ! | GCTTCAAATATATATTGGTA+TGG | + | chr4_3:7170537-7170556 | Msa0627080:three_prime_UTR | 25.0% |
| ! | TATATCACCTACTAGAATAT+GGG | - | chr4_3:7170599-7170618 | None:intergenic | 25.0% |
| ! | ATATATCACCTACTAGAATA+TGG | - | chr4_3:7170600-7170619 | None:intergenic | 25.0% |
| TGGGAAAATATTGTAAAGGA+GGG | - | chr4_3:7168181-7168200 | None:intergenic | 30.0% | |
| !! | AAACGTGTTTTTGTGCTAAA+TGG | - | chr4_3:7168224-7168243 | None:intergenic | 30.0% |
| ! | TGTGAAGATGAATAAGTTGA+AGG | - | chr4_3:7168371-7168390 | None:intergenic | 30.0% |
| ! | TAGATGTTTTCAGAACTGTA+AGG | - | chr4_3:7168475-7168494 | None:intergenic | 30.0% |
| !! | TTACAGTTCTGAAAACATCT+AGG | + | chr4_3:7168474-7168493 | Msa0627080:CDS | 30.0% |
| !! | AAAACATCTAGGTTTTTCAG+TGG | + | chr4_3:7168485-7168504 | Msa0627080:CDS | 30.0% |
| !! | GTTTGTTGTGTATGATTGTA+AGG | + | chr4_3:7168514-7168533 | Msa0627080:CDS | 30.0% |
| ACAACCAACAAAATCTGAAT+CGG | - | chr4_3:7168737-7168756 | None:intergenic | 30.0% | |
| ATCTCTGTCTTAACTAACTT+TGG | + | chr4_3:7168760-7168779 | Msa0627080:intron | 30.0% | |
| ATTAGTAACGTTGTACGAAA+AGG | - | chr4_3:7168933-7168952 | None:intergenic | 30.0% | |
| !!! | TCACACATTTTAGTTCTACA+CGG | - | chr4_3:7168967-7168986 | None:intergenic | 30.0% |
| CATATTCAAACCTAGATCTT+TGG | + | chr4_3:7169035-7169054 | Msa0627080:intron | 30.0% | |
| ACCTAGATCTTTGGTTAAAT+TGG | + | chr4_3:7169044-7169063 | Msa0627080:intron | 30.0% | |
| TCCAATTTAACCAAAGATCT+AGG | - | chr4_3:7169048-7169067 | None:intergenic | 30.0% | |
| ATATACAACTGAATTTGGGA+TGG | + | chr4_3:7169220-7169239 | Msa0627080:intron | 30.0% | |
| AGATTACTATCTCAAGTGAT+AGG | - | chr4_3:7169396-7169415 | None:intergenic | 30.0% | |
| TCCTAAGATAGTGAAATCTT+GGG | - | chr4_3:7169471-7169490 | None:intergenic | 30.0% | |
| !! | GGTATGTTTGATTTGCAATT+AGG | - | chr4_3:7169524-7169543 | None:intergenic | 30.0% |
| GAAAAAGAGTGATTAAGGTA+GGG | - | chr4_3:7169545-7169564 | None:intergenic | 30.0% | |
| TGAAAAAGAGTGATTAAGGT+AGG | - | chr4_3:7169546-7169565 | None:intergenic | 30.0% | |
| TATTCCTTTGACTGAAATCA+AGG | - | chr4_3:7169775-7169794 | None:intergenic | 30.0% | |
| ! | GATCTTTTCACATTGAAGAT+TGG | - | chr4_3:7170056-7170075 | None:intergenic | 30.0% |
| AAAGATCTTCAATAATCGCA+CGG | + | chr4_3:7170069-7170088 | Msa0627080:CDS | 30.0% | |
| AAATCTTACAGCATCTTTGT+GGG | - | chr4_3:7170163-7170182 | None:intergenic | 30.0% | |
| AAAATCTTACAGCATCTTTG+TGG | - | chr4_3:7170164-7170183 | None:intergenic | 30.0% | |
| TAATGCCACAAAGAAATTAG+TGG | + | chr4_3:7170184-7170203 | Msa0627080:CDS | 30.0% | |
| TTGGTACTTGATCAAATCAA+TGG | + | chr4_3:7170317-7170336 | Msa0627080:CDS | 30.0% | |
| GGTGAGAATTTCTTTGATAA+TGG | + | chr4_3:7170338-7170357 | Msa0627080:CDS | 30.0% | |
| TTCATCAATCTTCTGTAGTA+GGG | - | chr4_3:7170385-7170404 | None:intergenic | 30.0% | |
| ATTCATCAATCTTCTGTAGT+AGG | - | chr4_3:7170386-7170405 | None:intergenic | 30.0% | |
| ! | AGGAAGCACAAATTAAAAGA+GGG | - | chr4_3:7170441-7170460 | None:intergenic | 30.0% |
| ! | AAGGAAGCACAAATTAAAAG+AGG | - | chr4_3:7170442-7170461 | None:intergenic | 30.0% |
| TGTATGGCTTGAAATTTGAA+AGG | - | chr4_3:7170516-7170535 | None:intergenic | 30.0% | |
| ATATCACCTACTAGAATATG+GGG | - | chr4_3:7170598-7170617 | None:intergenic | 30.0% | |
| GAAAATATTGTAAAGGAGGG+TGG | - | chr4_3:7168178-7168197 | None:intergenic | 35.0% | |
| CTGGGAAAATATTGTAAAGG+AGG | - | chr4_3:7168182-7168201 | None:intergenic | 35.0% | |
| GAGCTGGGAAAATATTGTAA+AGG | - | chr4_3:7168185-7168204 | None:intergenic | 35.0% | |
| ! | TGTTTTCAGAACTGTAAGGT+TGG | - | chr4_3:7168471-7168490 | None:intergenic | 35.0% |
| CTTGTTCTTATGAACACACA+TGG | + | chr4_3:7168593-7168612 | Msa0627080:CDS | 35.0% | |
| GTACGAAAAGGATATCTAGT+TGG | - | chr4_3:7168921-7168940 | None:intergenic | 35.0% | |
| TATGGGTTCAAATCTAGTGT+TGG | + | chr4_3:7169320-7169339 | Msa0627080:intron | 35.0% | |
| CCTAAGATAGTGAAATCTTG+GGG | - | chr4_3:7169470-7169489 | None:intergenic | 35.0% | |
| GTCCTAAGATAGTGAAATCT+TGG | - | chr4_3:7169472-7169491 | None:intergenic | 35.0% | |
| AAACTGTTCACGCAACTAAA+CGG | - | chr4_3:7169494-7169513 | None:intergenic | 35.0% | |
| TTCAAAGGAGAGAGAAAAGA+CGG | + | chr4_3:7170023-7170042 | Msa0627080:CDS | 35.0% | |
| TTTACCAAGCATAACACTAG+TGG | - | chr4_3:7170237-7170256 | None:intergenic | 35.0% | |
| GATAATCCCCATATTCTAGT+AGG | + | chr4_3:7170589-7170608 | Msa0627080:three_prime_UTR | 35.0% | |
| !! | TCTAGGTTTTTCAGTGGTGA+TGG | + | chr4_3:7168491-7168510 | Msa0627080:CDS | 40.0% |
| !! | CTAGGTTTTTCAGTGGTGAT+GGG | + | chr4_3:7168492-7168511 | Msa0627080:CDS | 40.0% |
| TCTTCCTTATCACGTGTGTT+TGG | - | chr4_3:7168572-7168591 | None:intergenic | 40.0% | |
| AGTACATACCTTTCTACGCA+AGG | - | chr4_3:7168633-7168652 | None:intergenic | 40.0% | |
| !!! | CTCACCGATTCAGATTTTGT+TGG | + | chr4_3:7168730-7168749 | Msa0627080:intron | 40.0% |
| TCCAACTGATCGAGCAATTA+TGG | + | chr4_3:7169302-7169321 | Msa0627080:intron | 40.0% | |
| CCAACTGATCGAGCAATTAT+GGG | + | chr4_3:7169303-7169322 | Msa0627080:intron | 40.0% | |
| CCCCAAGATTTCACTATCTT+AGG | + | chr4_3:7169467-7169486 | Msa0627080:intron | 40.0% | |
| TGCACCTTGATTTCAGTCAA+AGG | + | chr4_3:7169768-7169787 | Msa0627080:intron | 40.0% | |
| AACCAAGTCTTCATCAACGA+TGG | + | chr4_3:7169994-7170013 | Msa0627080:CDS | 40.0% | |
| ACCAAGTCTTCATCAACGAT+GGG | + | chr4_3:7169995-7170014 | Msa0627080:CDS | 40.0% | |
| GTCAAGAATGACCATAACAG+TGG | + | chr4_3:7170091-7170110 | Msa0627080:CDS | 40.0% | |
| AAGAATGACCATAACAGTGG+AGG | + | chr4_3:7170094-7170113 | Msa0627080:CDS | 40.0% | |
| CTCAGCCACTAATTTCTTTG+TGG | - | chr4_3:7170192-7170211 | None:intergenic | 40.0% | |
| GCAAAGGACACATCAAAATC+AGG | - | chr4_3:7170284-7170303 | None:intergenic | 40.0% | |
| ! | TTTTGATGTGTCCTTTGCCA+TGG | + | chr4_3:7170286-7170305 | Msa0627080:CDS | 40.0% |
| TTTGATGTGTCCTTTGCCAT+GGG | + | chr4_3:7170287-7170306 | Msa0627080:CDS | 40.0% | |
| AAGTACCAAAACCAATCCCA+TGG | - | chr4_3:7170306-7170325 | None:intergenic | 40.0% | |
| TAATGGGACCATTGAAACCT+CGG | + | chr4_3:7170355-7170374 | Msa0627080:CDS | 40.0% | |
| ! | GTAAGGGACAACTCGTTTTC+CGG | + | chr4_3:7168531-7168550 | Msa0627080:CDS | 45.0% |
| !! | GTTTTCCGGTTTGACTCGTA+TGG | + | chr4_3:7168545-7168564 | Msa0627080:CDS | 45.0% |
| TTGGTCCATACGAGTCAAAC+CGG | - | chr4_3:7168553-7168572 | None:intergenic | 45.0% | |
| TGGACCAAACACACGTGATA+AGG | + | chr4_3:7168565-7168584 | Msa0627080:CDS | 45.0% | |
| TCTTCTCACCTTGCGTAGAA+AGG | + | chr4_3:7168622-7168641 | Msa0627080:CDS | 45.0% | |
| CCCATAATTGCTCGATCAGT+TGG | - | chr4_3:7169306-7169325 | None:intergenic | 45.0% | |
| AGTTGCGTGAACAGTTTGAG+AGG | + | chr4_3:7169497-7169516 | Msa0627080:intron | 45.0% | |
| ! | TCCCATCGTTGATGAAGACT+TGG | - | chr4_3:7169999-7170018 | None:intergenic | 45.0% |
| AGTCTTCATCAACGATGGGA+AGG | + | chr4_3:7169999-7170018 | Msa0627080:CDS | 45.0% | |
| CAACGATGGGAAGGATTCAA+AGG | + | chr4_3:7170008-7170027 | Msa0627080:CDS | 45.0% | |
| ATCGTGTACCTCCACTGTTA+TGG | - | chr4_3:7170105-7170124 | None:intergenic | 45.0% | |
| ! | GTGTGGAGTACCTCATTGAA+GGG | + | chr4_3:7170132-7170151 | Msa0627080:CDS | 45.0% |
| CAAGCATAACACTAGTGGTG+GGG | - | chr4_3:7170232-7170251 | None:intergenic | 45.0% | |
| CCAAGCATAACACTAGTGGT+GGG | - | chr4_3:7170233-7170252 | None:intergenic | 45.0% | |
| ACCAAGCATAACACTAGTGG+TGG | - | chr4_3:7170234-7170253 | None:intergenic | 45.0% | |
| CAAAACCAATCCCATGGCAA+AGG | - | chr4_3:7170300-7170319 | None:intergenic | 45.0% | |
| !!! | CTTTGCCATGGGATTGGTTT+TGG | + | chr4_3:7170298-7170317 | Msa0627080:CDS | 45.0% |
| !! | AAAAAAATATTATACATATT+TGG | + | chr4_3:7168867-7168886 | Msa0627080:intron | 5.0% |
| !! | AAATTAAATAAATATGTTAT+TGG | - | chr4_3:7169192-7169211 | None:intergenic | 5.0% |
| ! | CAATGAGGTACTCCACACCT+GGG | - | chr4_3:7170130-7170149 | None:intergenic | 50.0% |
| ! | TCAATGAGGTACTCCACACC+TGG | - | chr4_3:7170131-7170150 | None:intergenic | 50.0% |
| ! | GGTGTGGAGTACCTCATTGA+AGG | + | chr4_3:7170131-7170150 | Msa0627080:CDS | 50.0% |
| GTGGGAAACACCCTTCAATG+AGG | - | chr4_3:7170145-7170164 | None:intergenic | 50.0% | |
| AGTGGCTGAGATTCGTCGTA+AGG | + | chr4_3:7170202-7170221 | Msa0627080:CDS | 50.0% | |
| CCCACCACTAGTGTTATGCT+TGG | + | chr4_3:7170230-7170249 | Msa0627080:CDS | 50.0% | |
| TGTGTCCTTTGCCATGGGAT+TGG | + | chr4_3:7170292-7170311 | Msa0627080:CDS | 50.0% | |
| ! | GTGGAGGTACACGATAACCC+AGG | + | chr4_3:7170110-7170129 | Msa0627080:CDS | 55.0% |
| GGTACACGATAACCCAGGTG+TGG | + | chr4_3:7170115-7170134 | Msa0627080:CDS | 55.0% | |
| GGCTGAGATTCGTCGTAAGG+TGG | + | chr4_3:7170205-7170224 | Msa0627080:CDS | 55.0% | |
| AGGGTGCACCGAGGTTTCAA+TGG | - | chr4_3:7170366-7170385 | None:intergenic | 55.0% | |
| TTCTGTAGTAGGGTGCACCG+AGG | - | chr4_3:7170375-7170394 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 7168173 | 7170713 | 7168173 | ID=Msa0627080;Name=Msa0627080 |
| chr4_3 | mRNA | 7168173 | 7170713 | 7168173 | ID=Msa0627080-mRNA-1;Parent=Msa0627080;Name=Msa0627080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=243|1|1|1|1|1|2|313|211 |
| chr4_3 | exon | 7168173 | 7168643 | 7168173 | ID=Msa0627080-mRNA-1:exon:2062;Parent=Msa0627080-mRNA-1 |
| chr4_3 | exon | 7169993 | 7170713 | 7169993 | ID=Msa0627080-mRNA-1:exon:2063;Parent=Msa0627080-mRNA-1 |
| chr4_3 | five_prime_UTR | 7168173 | 7168415 | 7168173 | ID=Msa0627080-mRNA-1:five_prime_utr;Parent=Msa0627080-mRNA-1 |
| chr4_3 | CDS | 7168416 | 7168643 | 7168416 | ID=Msa0627080-mRNA-1:cds;Parent=Msa0627080-mRNA-1 |
| chr4_3 | CDS | 7169993 | 7170400 | 7169993 | ID=Msa0627080-mRNA-1:cds;Parent=Msa0627080-mRNA-1 |
| chr4_3 | three_prime_UTR | 7170401 | 7170713 | 7170401 | ID=Msa0627080-mRNA-1:three_prime_utr;Parent=Msa0627080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
