AlfalfaGEDB | Msa0365510

M. sativa cultivar zhongmu-4 / Msa0365510

KEGG: -
GO: -
PFAM: PF07719.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365510	XP_013460341.1	97.946	925	19	0	1	925	1	925	0.0	1881

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365510	sp\|O65020\|ETO1_ARATH	63.152	863	315	3	62	924	89	948	0.0	1156

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365510	A0A072UXV6	97.946	925	19	0	1	925	1	925	0.0	1881

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0365510	Msa0458460	0.811968	5.369840e-51	-8.615850e-47
Msa0365510	Msa0485670	0.861700	8.532445e-64	-8.615850e-47
Msa0365510	Msa1447330	0.866885	2.054922e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0365510	MtrunA17_Chr3g0105811	97.946	925	19	0	1	925	1	925	0.0	1881
Msa0365510	MtrunA17_Chr4g0005681	58.404	940	371	9	1	922	9	946	0.0	1109
Msa0365510	MtrunA17_Chr7g0243131	64.774	687	242	0	236	922	1	687	0.0	942
Msa0365510	MtrunA17_Chr1g0185181	47.535	852	421	6	74	920	51	881	0.0	787
Msa0365510	MtrunA17_Chr7g0243111	44.211	190	95	3	1	183	9	194	1.90e-38	142

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0365510	AT3G51770.2	59.748	954	348	8	1	924	9	956	1157
Msa0365510	AT3G51770.1	59.748	954	348	8	1	924	1	948	1156
Msa0365510	AT5G58550.1	56.587	926	378	7	1	919	1	909	1031
Msa0365510	AT4G02680.1	48.531	851	416	5	74	920	51	883	780

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Find 172 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCATTCCACCTCAATGC+AGG	0.545159	3_1:+59681727	Msa0365510:CDS
AAACTCAAGAAGCTATACAT+TGG	0.574044	3_1:+59682970	Msa0365510:three_prime_UTR
AAAGTCTCTACAAGGTTGAT+TGG	0.404114	3_1:-59679650	None:intergenic
AAATATAAACCTTTGAGAAA+AGG	0.397426	3_1:-59679300	None:intergenic
AAATGATTTCTGAATTTCAA+TGG	0.382753	3_1:-59681825	None:intergenic
AACAAGATTTGCAAATTCTG+AGG	0.534851	3_1:-59679570	None:intergenic
AACCTCCTATGCTCAGAAAG+TGG	0.581641	3_1:-59678967	None:intergenic
AACTCTAGCAGGCTCTTTCC+AGG	0.361101	3_1:-59681312	None:intergenic
AACTTTGAATGAAAATAAAC+TGG	0.292569	3_1:-59679330	None:intergenic
AAGAAATCAAGTGTGTTAGG+TGG	0.610352	3_1:+59680083	Msa0365510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGATGAATGATCTGAACT+TGG	-	chr3_1:59679168-59679187	None:intergenic	30.0%
AACAAGATTTGCAAATTCTG+AGG	-	chr3_1:59679573-59679592	None:intergenic	30.0%
CATGGTTAAGATTTGAAAGA+AGG	+	chr3_1:59679846-59679865	Msa0365510:CDS	30.0%
TGAATGTCCAAAGAAGAATT+TGG	+	chr3_1:59679922-59679941	Msa0365510:CDS	30.0%
CCAAAGAAGAATTTGGAAAA+TGG	+	chr3_1:59679929-59679948	Msa0365510:CDS	30.0%
ATGAAGAAATCAAGTGTGTT+AGG	+	chr3_1:59680080-59680099	Msa0365510:CDS	30.0%
TTACAGCAGAACAAAAAGAT+TGG	+	chr3_1:59680231-59680250	Msa0365510:CDS	30.0%
ATCTTCTTGTGATTCTCATT+TGG	+	chr3_1:59680324-59680343	Msa0365510:CDS	30.0%
GATACTTATTGAGTATGGAT+TGG	+	chr3_1:59680378-59680397	Msa0365510:CDS	30.0%
GAATTCGCTTCATAATTCAA+AGG	+	chr3_1:59680459-59680478	Msa0365510:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	59678932	59683236	59678932	ID=Msa0365510;Name=Msa0365510
chr3_1	mRNA	59678932	59683236	59678932	ID=Msa0365510-mRNA-1;Parent=Msa0365510;Name=Msa0365510-mRNA-1;_AED=0.02;_eAED=0.02;_QI=472\|1\|1\|1\|1\|1\|4\|277\|925
chr3_1	exon	59678932	59681358	59678932	ID=Msa0365510-mRNA-1:exon:11379;Parent=Msa0365510-mRNA-1
chr3_1	exon	59681682	59681973	59681682	ID=Msa0365510-mRNA-1:exon:11380;Parent=Msa0365510-mRNA-1
chr3_1	exon	59682057	59682366	59682057	ID=Msa0365510-mRNA-1:exon:11381;Parent=Msa0365510-mRNA-1
chr3_1	exon	59682739	59683236	59682739	ID=Msa0365510-mRNA-1:exon:11382;Parent=Msa0365510-mRNA-1
chr3_1	five_prime_UTR	59678932	59679403	59678932	ID=Msa0365510-mRNA-1:five_prime_utr;Parent=Msa0365510-mRNA-1
chr3_1	CDS	59679404	59681358	59679404	ID=Msa0365510-mRNA-1:cds;Parent=Msa0365510-mRNA-1
chr3_1	CDS	59681682	59681973	59681682	ID=Msa0365510-mRNA-1:cds;Parent=Msa0365510-mRNA-1
chr3_1	CDS	59682057	59682366	59682057	ID=Msa0365510-mRNA-1:cds;Parent=Msa0365510-mRNA-1
chr3_1	CDS	59682739	59682959	59682739	ID=Msa0365510-mRNA-1:cds;Parent=Msa0365510-mRNA-1
chr3_1	three_prime_UTR	59682960	59683236	59682960	ID=Msa0365510-mRNA-1:three_prime_utr;Parent=Msa0365510-mRNA-1

Gene Sequence

>Msa0365510

ATGCGTAGTTTGAAGATTGTTGAACGTTTTAAGAGTATTCAGGTTCATGCTCTTAGTTCTTCATCTGAAACTAATGGTGACAGCAAAACCAAACCTCACAACGTTAACAGACACAGAACAATATTGTCTTGGTCAAAATCAAAATTCAACAACAGTAACACAAAAACCTCAGAATTTGCAAATCTTGTTTCTCTTCAGTTACCTTCAACTGACACTATTGAACCATCTATAGAACCTTGCCTTAAACCAATCAACCTTGTAGAGACTTTAGCAGAACTCTATCAACGGATAGAGTTTTGCTCTTCACAGTCTGAGAAAGTGACACTTTTTGTTGAACTTTTCTCTGTTTTGTATGGTCTTGGAGACCAGAAGTTACTCAGAAGATGTCTTAGAAATGCGCGGCAGAACGCGGAAGATGTGATGTCAAAGGTTGTGTTGTCTGCATGGTTAAGATTTGAAAGAAGGGATGATGAACTTGTTGGTGTTTGTTCAATGGATTGTGGTGGTTATAATGTTCTTGAATGTCCAAAGAAGAATTTGGAAAATGGGTTTAGTCCTTTTTCAATTAATGATCACTGCAAGTGTACTCAAGAAGAGAAAAAGCATGAAAATTTTGATAATGATGAATGTGTTTGTTTGTCAGATGAGGAAAGTGATGTTTTGTTTTGTGTTGGGAATGAAGAAATCAAGTGTGTTAGGTGGAGAATTGCTTCACTTTCAGAACCATTGAATGCAATGCTTTGTGGTGGATTTCTAGAATCCAAAATGTGGAAAATTGATTTTTCAGGTAATGGATTATGCTCAGAAGGGATGAAAGCAGTTGAATTTTACAGCAGAACAAAAAGATTGGATCTTTTTGGTCCCAATACTGTTTTAGAGCTTCTGTCATTTGCTAATAGGTTTTGTTGTGAGGAGATGAAATCTTCTTGTGATTCTCATTTGGCTTCAATTGTTGGAAATGTTGAAGATGCATTGATACTTATTGAGTATGGATTGGAAGAAAGTGCAAAACTTCTTATAGTTTCTTGCTTGCAAATTTTTCTCAGGGAGCTTCCGAATTCGCTTCATAATTCAAAGGTGATAAATTTTTTATGTAGTTTTGAGTCAAAGGAAAAGTTGGAAAATTTAGGGTGTGCTACTTTCTTGTTGTACTATTTTCTCAGCCAGGTGGCAATGGAAGAAAGCATCGTATCGAAAACAACAGCGATGTTGTTGGAGAGAATGAAAGAGTGTGCTTCAGAGAGATGGCAGAAGGGTCTTGCATTGCATCAACTAGGGTGTGTGTTTCTTGAGAGAAGAGAGTATAAAGAAGCTCAACATTGTTTTGATGAAGCGGTTGAATTAGGCCATGTTTATTCTATAGCAGGTGTGGCTAGAACAAAGCATAAACAAGGTCAACCATATTCGGCTTATAAGTTAATTAGTTCACTCATATTCGAGTATAAACCAGTCGGTTGGATGTATCAAGAGAGAGCATTGTACAATATGGGAAGAGAAAAAGGTTTTGATTTGGATTTTGCAACTCAACTCGATCCTTCACTTTCATTTCCGTATAAATATAGAGCATTGGAGAAAGTCGAGGAGAAGCAAATAAAGGAAGGGATTATGGAGTTAGATAAGTTTCTAGGATTTAAGCTTTCACCTGATTGTTTAGAGTTGAGGGCTTGGTTGTATATTGCATTAGATGATTATGATAGTGCTATAAGAGATATTAGAGCTTTGTTAACCATAGAGGCTAATTACATAACTTTACATGGGAGGATCAAAGGTGAATGTTTGGTTCAAATTCTTCAAAGTAGAATTCAGAAGAAGAATCAGGCTGATTGTTGGATGCAATTATACCAACAATGGTCTTCCGTTGATGATGTTGGTTCTTTGGCTATTATACATCAGATGCTAGAGAATGAGCCTGGAAAGAGCCTGCTAGAGTTTCGTCTGTCGCTACTCCTCTTGAGATTAAACTGTCAAAAGGCTGCAATGCGCAGTTTGCGGCTGGCAAGAAACCATTCCACCTCAATGCAGGAGAGGCTAATTTATGAAGGATGGATTCTATATGATACTGGCTATCGTGACGAGGCTGTTACAAGGGCTGACAAATCCATTGAAATTCAGAAATCATTTGAAGCCTTTTTCCTAAAAGCATATGTGTTAGCAGATACAAATCTTGATCCTGAATCTTCTTCTTATGTTATTCAGCTTTTGAAAGAGGCACTTAAATGTCCTTCAGACGGACTTCGCAAAGGACAAGCATTGAATAACATGGGGAGTATTTATGTGGATTGTGGTAAAATAGAACTTGCAAAGGAATGCTACAACAATGCACTTGCGATTAGGCACACAAGAGCTCATCAAGGTCTGGCGCGTGTTTATCATCAGAAAAATCAACGAAAGGCTGCATACGATGAAATGACAATGCTGATTGAGAAAGCGGAGAGTAATGCCTCGGCGTATGAGAAACGATCAGAATACTGTGATCGTGAGATGGCGAAGGCTGATCTTGATGTTGCAACACACCTTGATCCTTTAAGGACATACCCTTATAGATACAGGGCAGCAGTGCTGATGGATGAGCAAAAAGAAACAGAAGCAGTAGAAGAACTCACTAAGGCTATAAAATTCAAGCCAGATCTTCAAATGCTTCATCTACGAGCCGCGTTTTACGAGTCAATGGGAGATCTATTTTCTGCTCTTAAAGATTGTCAAGCTGCTCTTTGTTTAGATCCAACCCATGCAGCCACACTTGATTTATATCAAAGGATACAAAAGCTGAACTTTTGA

Protein sequence

>Msa0365510

MRSLKIVERFKSIQVHALSSSSETNGDSKTKPHNVNRHRTILSWSKSKFNNSNTKTSEFANLVSLQLPSTDTIEPSIEPCLKPINLVETLAELYQRIEFCSSQSEKVTLFVELFSVLYGLGDQKLLRRCLRNARQNAEDVMSKVVLSAWLRFERRDDELVGVCSMDCGGYNVLECPKKNLENGFSPFSINDHCKCTQEEKKHENFDNDECVCLSDEESDVLFCVGNEEIKCVRWRIASLSEPLNAMLCGGFLESKMWKIDFSGNGLCSEGMKAVEFYSRTKRLDLFGPNTVLELLSFANRFCCEEMKSSCDSHLASIVGNVEDALILIEYGLEESAKLLIVSCLQIFLRELPNSLHNSKVINFLCSFESKEKLENLGCATFLLYYFLSQVAMEESIVSKTTAMLLERMKECASERWQKGLALHQLGCVFLERREYKEAQHCFDEAVELGHVYSIAGVARTKHKQGQPYSAYKLISSLIFEYKPVGWMYQERALYNMGREKGFDLDFATQLDPSLSFPYKYRALEKVEEKQIKEGIMELDKFLGFKLSPDCLELRAWLYIALDDYDSAIRDIRALLTIEANYITLHGRIKGECLVQILQSRIQKKNQADCWMQLYQQWSSVDDVGSLAIIHQMLENEPGKSLLEFRLSLLLLRLNCQKAAMRSLRLARNHSTSMQERLIYEGWILYDTGYRDEAVTRADKSIEIQKSFEAFFLKAYVLADTNLDPESSSYVIQLLKEALKCPSDGLRKGQALNNMGSIYVDCGKIELAKECYNNALAIRHTRAHQGLARVYHQKNQRKAAYDEMTMLIEKAESNASAYEKRSEYCDREMAKADLDVATHLDPLRTYPYRYRAAVLMDEQKETEAVEELTKAIKFKPDLQMLHLRAAFYESMGDLFSALKDCQAALCLDPTHAATLDLYQRIQKLNF*