Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458460 | XP_013460341.1 | 97.730 | 925 | 21 | 0 | 1 | 925 | 1 | 925 | 0.0 | 1871 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458460 | sp|O65020|ETO1_ARATH | 63.036 | 863 | 316 | 3 | 62 | 924 | 89 | 948 | 0.0 | 1150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458460 | A0A072UXV6 | 97.730 | 925 | 21 | 0 | 1 | 925 | 1 | 925 | 0.0 | 1871 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0231200 | Msa0458460 | 0.826707 | 2.340395e-54 | -8.615850e-47 |
| Msa0365510 | Msa0458460 | 0.811968 | 5.369840e-51 | -8.615850e-47 |
| Msa0435210 | Msa0458460 | 0.800949 | 1.133543e-48 | -8.615850e-47 |
| Msa0458460 | Msa0485670 | 0.859114 | 5.173932e-63 | -8.615850e-47 |
| Msa0458460 | Msa0549370 | 0.826471 | 2.663596e-54 | -8.615850e-47 |
| Msa0458460 | Msa0550050 | 0.810109 | 1.357330e-50 | -8.615850e-47 |
| Msa0458460 | Msa0576790 | 0.822151 | 2.761338e-53 | -8.615850e-47 |
| Msa0458460 | Msa0581010 | 0.818658 | 1.747077e-52 | -8.615850e-47 |
| Msa0458460 | Msa0619780 | 0.803825 | 2.897937e-49 | -8.615850e-47 |
| Msa0458460 | Msa0626450 | 0.804866 | 1.758268e-49 | -8.615850e-47 |
| Msa0458460 | Msa0626490 | 0.802993 | 4.308626e-49 | -8.615850e-47 |
| Msa0458460 | Msa0664600 | 0.801547 | 8.550601e-49 | -8.615850e-47 |
| Msa0458460 | Msa0692980 | 0.815831 | 7.558056e-52 | -8.615850e-47 |
| Msa0458460 | Msa0706230 | 0.831596 | 1.525833e-55 | -8.615850e-47 |
| Msa0458460 | Msa0881360 | 0.813487 | 2.497248e-51 | -8.615850e-47 |
| Msa0458460 | Msa1031660 | 0.800571 | 1.353801e-48 | -8.615850e-47 |
| Msa0458460 | Msa1044680 | 0.812630 | 3.849240e-51 | -8.615850e-47 |
| Msa0458460 | Msa1070720 | 0.810201 | 1.296965e-50 | -8.615850e-47 |
| Msa0458460 | Msa1105640 | 0.807183 | 5.725279e-50 | -8.615850e-47 |
| Msa0458460 | Msa1244500 | 0.801559 | 8.504007e-49 | -8.615850e-47 |
| Msa0458460 | Msa1443740 | 0.819099 | 1.387213e-52 | -8.615850e-47 |
| Msa0458460 | Msa1447330 | 0.858216 | 9.594441e-63 | -8.615850e-47 |
| Msa0290720 | Msa0458460 | 0.808970 | 2.383804e-50 | -8.615850e-47 |
| Msa0323270 | Msa0458460 | 0.826062 | 3.333532e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458460 | MtrunA17_Chr3g0105811 | 97.730 | 925 | 21 | 0 | 1 | 925 | 1 | 925 | 0.0 | 1871 |
| Msa0458460 | MtrunA17_Chr4g0005681 | 58.617 | 940 | 369 | 9 | 1 | 922 | 9 | 946 | 0.0 | 1108 |
| Msa0458460 | MtrunA17_Chr7g0243131 | 65.066 | 687 | 240 | 0 | 236 | 922 | 1 | 687 | 0.0 | 946 |
| Msa0458460 | MtrunA17_Chr1g0185181 | 47.535 | 852 | 421 | 6 | 74 | 920 | 51 | 881 | 0.0 | 787 |
| Msa0458460 | MtrunA17_Chr7g0243111 | 44.211 | 190 | 95 | 3 | 1 | 183 | 9 | 194 | 1.82e-37 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458460 | AT3G51770.2 | 63.036 | 863 | 316 | 3 | 62 | 924 | 97 | 956 | 0.0 | 1150 |
| Msa0458460 | AT3G51770.1 | 63.036 | 863 | 316 | 3 | 62 | 924 | 89 | 948 | 0.0 | 1150 |
| Msa0458460 | AT5G58550.1 | 56.587 | 926 | 378 | 7 | 1 | 919 | 1 | 909 | 0.0 | 1033 |
| Msa0458460 | AT4G02680.1 | 48.649 | 851 | 415 | 5 | 74 | 920 | 51 | 883 | 0.0 | 785 |
Find 171 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACACACCTTGATCCTTTA+AGG | 0.060854 | 3_3:+54156301 | Msa0458460:CDS |
| CTACAAGGTTGATTGGTTTA+AGG | 0.146095 | 3_3:-54153630 | None:intergenic |
| AAGGAAAAGTTGGAAAATTT+AGG | 0.184841 | 3_3:+54154498 | Msa0458460:CDS |
| CCAAAGATGAATTTGGAAAA+TGG | 0.201041 | 3_3:+54153916 | Msa0458460:CDS |
| GCAAATAAAGGAAGGGATTA+TGG | 0.210325 | 3_3:+54154977 | Msa0458460:CDS |
| TGAATGTCCAAAGATGAATT+TGG | 0.225359 | 3_3:+54153909 | Msa0458460:CDS |
| TACAATATGGGAAGAGAAAA+AGG | 0.232145 | 3_3:+54154870 | Msa0458460:CDS |
| TCCAATGCTCTATATTTATA+CGG | 0.234438 | 3_3:-54154939 | None:intergenic |
| CAGTGATCATTAATTGAAAA+AGG | 0.250740 | 3_3:-54153946 | None:intergenic |
| CGTTGATGATGTTGGTTCTT+TGG | 0.260043 | 3_3:+54155247 | Msa0458460:CDS |
| ATCTTCTTGTGATTCTCATT+TGG | 0.274382 | 3_3:+54154311 | Msa0458460:CDS |
| ATGGAGTTAGATAAGTTTCT+AGG | 0.286460 | 3_3:+54154996 | Msa0458460:CDS |
| GCATTGATACTTATTGAGTA+TGG | 0.289441 | 3_3:+54154360 | Msa0458460:CDS |
| AGGAAAAGTTGGAAAATTTA+GGG | 0.292799 | 3_3:+54154499 | Msa0458460:CDS |
| CCTGCTGCCCTGTATCTATA+AGG | 0.297319 | 3_3:-54156330 | None:intergenic |
| ATTAACTTATAAGCCGGATA+TGG | 0.308880 | 3_3:-54154789 | None:intergenic |
| CTATAAGGGTATGTCCTTAA+AGG | 0.309106 | 3_3:-54156315 | None:intergenic |
| AGTCTTGCATTGCATCAATT+AGG | 0.317285 | 3_3:+54154645 | Msa0458460:CDS |
| AGAGAGAGCATTGTACAATA+TGG | 0.319911 | 3_3:+54154857 | Msa0458460:CDS |
| CAAGACTAATTAGGTGAATA+TGG | 0.324403 | 3_3:-54157126 | None:intergenic |
| TAAAGAGTGCAAGACTAATT+AGG | 0.326408 | 3_3:-54157135 | None:intergenic |
| TTCGATGAAGCAGTTGAATT+AGG | 0.336536 | 3_3:+54154714 | Msa0458460:CDS |
| ACAACAATGCACTTGCAATT+AGG | 0.349845 | 3_3:+54156106 | Msa0458460:CDS |
| ACCTGATTGTTTAGAGTTGA+GGG | 0.350604 | 3_3:+54155031 | Msa0458460:CDS |
| CAAAGATGAATTTGGAAAAT+GGG | 0.350696 | 3_3:+54153917 | Msa0458460:CDS |
| TGTGTTTATAGTATCAAATA+TGG | 0.352774 | 3_3:+54157015 | Msa0458460:three_prime_UTR |
| TCTCATTTGGCTTCAATTGT+TGG | 0.360828 | 3_3:+54154324 | Msa0458460:CDS |
| AACTCTAGCAGGCTCTTTCC+AGG | 0.361101 | 3_3:-54155299 | None:intergenic |
| TTAAGGTAAGGTTCTATAGA+TGG | 0.365386 | 3_3:-54153613 | None:intergenic |
| AGTTATGTAATTAGCCTCTA+TGG | 0.365662 | 3_3:-54155117 | None:intergenic |
| AATATGAACCTTTGAGAAAA+GGG | 0.369712 | 3_3:-54153284 | None:intergenic |
| ATAACATAAGAAGAAGATTC+AGG | 0.375878 | 3_3:-54155883 | None:intergenic |
| AGCTTCTGTCATTTGCCAAT+AGG | 0.381135 | 3_3:+54154268 | Msa0458460:CDS |
| AAATGATTTCTGAATTTCAA+TGG | 0.382753 | 3_3:-54155812 | None:intergenic |
| GTCTTGCATTGCATCAATTA+GGG | 0.383554 | 3_3:+54154646 | Msa0458460:CDS |
| AGTTCTTCATCTGAAACTAA+TGG | 0.389641 | 3_3:+54153445 | Msa0458460:CDS |
| TTTGAATTATGAAGCGAATT+CGG | 0.390936 | 3_3:-54154444 | None:intergenic |
| TCTGTTAAGGTTGTGAGGTT+TGG | 0.394276 | 3_3:-54153479 | None:intergenic |
| AGAAGCTCTAAAACAGTATT+GGG | 0.396365 | 3_3:-54154252 | None:intergenic |
| CACCTGATTGTTTAGAGTTG+AGG | 0.398050 | 3_3:+54155030 | Msa0458460:CDS |
| AAGAAATCAAGTGTGTTAGA+AGG | 0.403139 | 3_3:+54154070 | Msa0458460:CDS |
| AAAGTCTCTACAAGGTTGAT+TGG | 0.404114 | 3_3:-54153637 | None:intergenic |
| AACTCAAGAAGCTATACATT+TGG | 0.406669 | 3_3:+54156956 | Msa0458460:three_prime_UTR |
| TTTGAATGAAAATAAACTTA+AGG | 0.408591 | 3_3:-54153312 | None:intergenic |
| TGCAATGCGCAGTTTGCGGC+TGG | 0.409116 | 3_3:+54155687 | Msa0458460:CDS |
| AAATATGAACCTTTGAGAAA+AGG | 0.411072 | 3_3:-54153285 | None:intergenic |
| CAACAGTATGTATATACATT+TGG | 0.411817 | 3_3:+54157071 | Msa0458460:three_prime_UTR |
| AGTCGAGGAGAAGCAAATAA+AGG | 0.422463 | 3_3:+54154965 | Msa0458460:CDS |
| GACATCTTCTGAGTAGCTTC+TGG | 0.426439 | 3_3:-54153756 | None:intergenic |
| CAGAAGCTCTAAAACAGTAT+TGG | 0.429864 | 3_3:-54154253 | None:intergenic |
| ATATTGTTCTGTGTCTGTTA+AGG | 0.430267 | 3_3:-54153492 | None:intergenic |
| GTTCAACACTTTAGCTCAAA+GGG | 0.431636 | 3_3:+54153335 | Msa0458460:five_prime_UTR |
| TAGAATTCAGAAGAAGAATC+AGG | 0.435527 | 3_3:+54155187 | Msa0458460:CDS |
| GAGGATCAAAGGTGAATGTT+TGG | 0.435726 | 3_3:+54155148 | Msa0458460:CDS |
| GGACATACCCTTATAGATAC+AGG | 0.436012 | 3_3:+54156322 | Msa0458460:CDS |
| GGCCATGTTTATTCCATAGC+AGG | 0.437661 | 3_3:+54154735 | Msa0458460:CDS |
| ACTTGTTGGTGTTTGTTCAA+TGG | 0.438005 | 3_3:+54153864 | Msa0458460:CDS |
| CTCCTCACAACAAAACCTAT+TGG | 0.438977 | 3_3:-54154283 | None:intergenic |
| AGATGAAGCATTTGAAGATC+AGG | 0.440910 | 3_3:-54156789 | None:intergenic |
| AGGCTGCAATGCGCAGTTTG+CGG | 0.457525 | 3_3:+54155683 | Msa0458460:CDS |
| TAAACAAGGTCAACCATATC+CGG | 0.457669 | 3_3:+54154776 | Msa0458460:CDS |
| ATTGTTTAGAGTTGAGGGCT+TGG | 0.457835 | 3_3:+54155036 | Msa0458460:CDS |
| GGATGGATTCTATACGATAC+TGG | 0.458073 | 3_3:+54155754 | Msa0458460:CDS |
| CCACAAAGCATTGCATTCAA+TGG | 0.458652 | 3_3:-54154114 | None:intergenic |
| TATAAAGAGATTCATACCTC+TGG | 0.467553 | 3_3:+54157189 | Msa0458460:three_prime_UTR |
| GAAAACAACAGCGATGTTGT+TGG | 0.467904 | 3_3:+54154584 | Msa0458460:CDS |
| GCTAATTACATAACTTTACA+TGG | 0.469791 | 3_3:+54155125 | Msa0458460:CDS |
| CATGGTTGAGGTTTGAAAGA+AGG | 0.469985 | 3_3:+54153833 | Msa0458460:CDS |
| TAGAGCTTTGTTAACCATAG+AGG | 0.473166 | 3_3:+54155103 | Msa0458460:CDS |
| AGGTTGATTGGTTTAAGGTA+AGG | 0.473641 | 3_3:-54153625 | None:intergenic |
| TGTTCTAGCCACACCTGCTA+TGG | 0.476036 | 3_3:-54154748 | None:intergenic |
| GCCCTCAACTCTAAACAATC+AGG | 0.478669 | 3_3:-54155032 | None:intergenic |
| AGAAGAATCAGGCTGATTGT+TGG | 0.481618 | 3_3:+54155198 | Msa0458460:CDS |
| GAGAGAGCATTGTACAATAT+GGG | 0.482919 | 3_3:+54154858 | Msa0458460:CDS |
| TTGTGTTGTCTGCATGGTTG+AGG | 0.483992 | 3_3:+54153821 | Msa0458460:CDS |
| CTGCTGCCCTGTATCTATAA+GGG | 0.484423 | 3_3:-54156329 | None:intergenic |
| TGTAACTTGTATAACTGATC+AGG | 0.484904 | 3_3:-54152981 | None:intergenic |
| CACAAGAGCTCATCAAGGTC+TGG | 0.485931 | 3_3:+54156131 | Msa0458460:CDS |
| TGCCACTTTCTGAGCATAGC+AGG | 0.489263 | 3_3:+54152954 | Msa0458460:five_prime_UTR |
| TAACATGGGGAGTATTTATG+TGG | 0.495928 | 3_3:+54156050 | Msa0458460:CDS |
| GATACTTATTGAGTATGGAT+TGG | 0.496423 | 3_3:+54154365 | Msa0458460:CDS |
| AGAGGCTAATTTATGAAGGA+TGG | 0.497913 | 3_3:+54155737 | Msa0458460:CDS |
| TCTCCTGCATTGAGGTGGAA+TGG | 0.502258 | 3_3:-54155717 | None:intergenic |
| CCATTGAATGCAATGCTTTG+TGG | 0.503790 | 3_3:+54154114 | Msa0458460:CDS |
| AGTTCAACACTTTAGCTCAA+AGG | 0.506973 | 3_3:+54153334 | Msa0458460:five_prime_UTR |
| CAGATGCTAGAGAATGAGCC+TGG | 0.507226 | 3_3:+54155281 | Msa0458460:CDS |
| GACAATGCTGATTGAGAAAG+CGG | 0.508703 | 3_3:+54156203 | Msa0458460:CDS |
| CATCAACGGAAGACCATTGT+TGG | 0.513844 | 3_3:-54155232 | None:intergenic |
| AGCAGTAGAAGAACTCACTA+AGG | 0.514403 | 3_3:+54156752 | Msa0458460:CDS |
| TCCGTATAAATATAGAGCAT+TGG | 0.515494 | 3_3:+54154938 | Msa0458460:CDS |
| CTAAAGATGCTTACCTCAAG+AGG | 0.517512 | 3_3:-54155337 | None:intergenic |
| TCAAAGGGTTGTTAGAAAAG+TGG | 0.520316 | 3_3:+54153350 | Msa0458460:five_prime_UTR |
| CAAAGGTTGTGTTGTCTGCA+TGG | 0.521375 | 3_3:+54153815 | Msa0458460:CDS |
| GCTCAGATTAAACTGTCAAA+AGG | 0.528581 | 3_3:+54155663 | Msa0458460:intron |
| TGGATGAATCAGAAGAAAGA+TGG | 0.528960 | 3_3:+54156976 | Msa0458460:three_prime_UTR |
| AAGAGTGTGCTGCAGAGAAA+TGG | 0.531402 | 3_3:+54154616 | Msa0458460:CDS |
| GTCTGTCTCTACTCCTCTTG+AGG | 0.531969 | 3_3:+54155324 | Msa0458460:CDS |
| AACAAGATTTGCAAATTCTG+AGG | 0.534851 | 3_3:-54153557 | None:intergenic |
| GACACAGAACAATATTGTCT+TGG | 0.535289 | 3_3:+54153500 | Msa0458460:CDS |
| GAACTAATTAACTTATAAGC+CGG | 0.538599 | 3_3:-54154795 | None:intergenic |
| ACTTTACATGGGAGGATCAA+AGG | 0.539277 | 3_3:+54155137 | Msa0458460:CDS |
| GGTAATGGATTATGTTCAGA+AGG | 0.539973 | 3_3:+54154177 | Msa0458460:CDS |
| AAACCATTCCACCTCAATGC+AGG | 0.545159 | 3_3:+54155714 | Msa0458460:CDS |
| GGTATGTCCTTAAAGGATCA+AGG | 0.546574 | 3_3:-54156308 | None:intergenic |
| CCTTATAGATACAGGGCAGC+AGG | 0.549665 | 3_3:+54156330 | Msa0458460:CDS |
| TTTGCAGGCATTGAATAACA+TGG | 0.549951 | 3_3:+54156035 | Msa0458460:intron |
| TTGCAGGCATTGAATAACAT+GGG | 0.554480 | 3_3:+54156036 | Msa0458460:intron |
| CAGGAGAGGCTAATTTATGA+AGG | 0.554998 | 3_3:+54155733 | Msa0458460:CDS |
| GGTTCAATAGTGTCAGTTGA+AGG | 0.555143 | 3_3:-54153592 | None:intergenic |
| ATCGTGACGAGGCTGTTACA+AGG | 0.556551 | 3_3:+54155779 | Msa0458460:CDS |
| GCATATATGACTAGTGCTGA+TGG | 0.557153 | 3_3:+54156710 | Msa0458460:intron |
| TCAAGTGTGGCTGCATGGGT+TGG | 0.559007 | 3_3:-54156888 | None:intergenic |
| ATGTAATGTAACTGTACAAG+AGG | 0.565524 | 3_3:-54157163 | None:intergenic |
| TAAATCAAGTGTGGCTGCAT+GGG | 0.565537 | 3_3:-54156892 | None:intergenic |
| GGTGTTTGTTCAATGGATTG+TGG | 0.568555 | 3_3:+54153871 | Msa0458460:CDS |
| GAGACAGACGAAACTCTAGC+AGG | 0.568951 | 3_3:-54155310 | None:intergenic |
| CTGTGTCTGTTAAGGTTGTG+AGG | 0.570139 | 3_3:-54153484 | None:intergenic |
| TGTTTATTCCATAGCAGGTG+TGG | 0.573947 | 3_3:+54154740 | Msa0458460:CDS |
| CCACACTTGATTTATGTCAA+AGG | 0.574409 | 3_3:+54156901 | Msa0458460:CDS |
| ATGGTTGAGGTTTGAAAGAA+GGG | 0.578755 | 3_3:+54153834 | Msa0458460:CDS |
| GGGAGTATTTATGTGGATTG+TGG | 0.580648 | 3_3:+54156057 | Msa0458460:CDS |
| GAGGAGAAGCAAATAAAGGA+AGG | 0.581506 | 3_3:+54154969 | Msa0458460:CDS |
| GAATTCGCTTCATAATTCAA+AGG | 0.583357 | 3_3:+54154446 | Msa0458460:CDS |
| GTGTGTTTGTTTGTCTGATG+AGG | 0.586309 | 3_3:+54154017 | Msa0458460:CDS |
| AGAATACTGTGATCGTGAGA+TGG | 0.587940 | 3_3:+54156257 | Msa0458460:CDS |
| TCTTGATACATCCAACCGAC+TGG | 0.590177 | 3_3:-54154837 | None:intergenic |
| TCGAGTATAAACCAGTCGGT+TGG | 0.595194 | 3_3:+54154826 | Msa0458460:CDS |
| TGGTCTTCCGTTGATGATGT+TGG | 0.597719 | 3_3:+54155239 | Msa0458460:CDS |
| AATGATGAATGATCTGAACT+TGG | 0.598053 | 3_3:-54153154 | None:intergenic |
| GTTTATAGTATCAAATATGG+AGG | 0.598563 | 3_3:+54157018 | Msa0458460:three_prime_UTR |
| CGCGGAAGATGTGATGTCAA+AGG | 0.599465 | 3_3:+54153798 | Msa0458460:CDS |
| TCGTGACGAGGCTGTTACAA+GGG | 0.600278 | 3_3:+54155780 | Msa0458460:CDS |
| TAGCCTCTCCTGCATTGAGG+TGG | 0.600521 | 3_3:-54155722 | None:intergenic |
| TTGAATGCAATGCTTTGTGG+TGG | 0.602718 | 3_3:+54154117 | Msa0458460:CDS |
| AATTAGCCTCTCCTGCATTG+AGG | 0.603715 | 3_3:-54155725 | None:intergenic |
| CCTTTGCGAAGTCCGTCTGA+AGG | 0.604404 | 3_3:-54155934 | None:intergenic |
| GGTGGCAATGGAAGAAAGCA+TGG | 0.605072 | 3_3:+54154557 | Msa0458460:CDS |
| GGATGCAATTATACCAACAA+TGG | 0.606647 | 3_3:+54155219 | Msa0458460:CDS |
| ATAAATCAAGTGTGGCTGCA+TGG | 0.607359 | 3_3:-54156893 | None:intergenic |
| AACCTGCTATGCTCAGAAAG+TGG | 0.607602 | 3_3:-54152956 | None:intergenic |
| TGGTAAAATAGAACTTGCAA+AGG | 0.609009 | 3_3:+54156077 | Msa0458460:CDS |
| GTTTGTTCAATGGATTGTGG+TGG | 0.609723 | 3_3:+54153874 | Msa0458460:CDS |
| TAGAGCATTGGAGAAAGTCG+AGG | 0.609855 | 3_3:+54154950 | Msa0458460:CDS |
| CACCTGCTATGGAATAAACA+TGG | 0.610888 | 3_3:-54154737 | None:intergenic |
| ATTACATAACTTTACATGGG+AGG | 0.612020 | 3_3:+54155129 | Msa0458460:CDS |
| AGAAGGGATGATGAACTTGT+TGG | 0.612740 | 3_3:+54153850 | Msa0458460:CDS |
| GAAAGCGGAAAGTAATGCCT+CGG | 0.613020 | 3_3:+54156218 | Msa0458460:CDS |
| GATTTCTAGAATCCAAAATG+TGG | 0.618681 | 3_3:+54154139 | Msa0458460:CDS |
| GACATACCCTTATAGATACA+GGG | 0.619740 | 3_3:+54156323 | Msa0458460:CDS |
| TGCAGGCATTGAATAACATG+GGG | 0.620435 | 3_3:+54156037 | Msa0458460:intron |
| TGATCGTTTCTCATATGCCG+AGG | 0.627833 | 3_3:-54156235 | None:intergenic |
| CTTTAGCAGAACTCTATCAA+CGG | 0.629968 | 3_3:+54153656 | Msa0458460:CDS |
| AGCTTGACAATCTTTAAGAG+CGG | 0.633769 | 3_3:-54156850 | None:intergenic |
| CTAATTACATAACTTTACAT+GGG | 0.634474 | 3_3:+54155126 | Msa0458460:CDS |
| TTATACGGAAATGAAAGTGA+AGG | 0.637799 | 3_3:-54154924 | None:intergenic |
| CAAAGAACCAACATCATCAA+CGG | 0.639146 | 3_3:-54155246 | None:intergenic |
| AGGCACACAAGAGCTCATCA+AGG | 0.640321 | 3_3:+54156126 | Msa0458460:CDS |
| TAGAAATGCGCGGCAGAACG+CGG | 0.641816 | 3_3:+54153780 | Msa0458460:CDS |
| GCACTTAAATGTCCTTCAGA+CGG | 0.641860 | 3_3:+54155922 | Msa0458460:CDS |
| GTTCTGCTAAAGTCTCTACA+AGG | 0.642685 | 3_3:-54153645 | None:intergenic |
| GAAGATGTCTTAGAAATGCG+CGG | 0.652556 | 3_3:+54153770 | Msa0458460:CDS |
| CCTTCAGACGGACTTCGCAA+AGG | 0.656665 | 3_3:+54155934 | Msa0458460:CDS |
| CCTTTGACATAAATCAAGTG+TGG | 0.657714 | 3_3:-54156901 | None:intergenic |
| CGATACTGGCTATCGTGACG+AGG | 0.657764 | 3_3:+54155768 | Msa0458460:CDS |
| ATTCCACCTCAATGCAGGAG+AGG | 0.663137 | 3_3:+54155719 | Msa0458460:CDS |
| AGGAGAAGCAAATAAAGGAA+GGG | 0.664981 | 3_3:+54154970 | Msa0458460:CDS |
| CTGTGATCGTGAGATGGCGA+AGG | 0.680984 | 3_3:+54156263 | Msa0458460:CDS |
| TATGCATTGTAGGAAACCAG+AGG | 0.694031 | 3_3:-54157205 | None:intergenic |
| GCTAGAACAAAGCATAAACA+AGG | 0.694172 | 3_3:+54154762 | Msa0458460:CDS |
| TCCCATTGACTCGTAAAACG+CGG | 0.712479 | 3_3:-54156817 | None:intergenic |
| ATATTCGAGTATAAACCAGT+CGG | 0.714478 | 3_3:+54154822 | Msa0458460:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTAATAATAGTATGTTTT+TGG | - | chr3_3:54153084-54153103 | None:intergenic | 15.0% |
| !! | TTTGAATGAAAATAAACTTA+AGG | - | chr3_3:54153315-54153334 | None:intergenic | 15.0% |
| !!! | TGATAAACGATTATTTTATA+AGG | - | chr3_3:54156400-54156419 | None:intergenic | 15.0% |
| !! | CAAAGAATGATATGAAAAAT+TGG | - | chr3_3:54153058-54153077 | None:intergenic | 20.0% |
| !!! | AAAATCAATTTTCCACATTT+TGG | - | chr3_3:54154154-54154173 | None:intergenic | 20.0% |
| !!! | AAAATTGATTTTTCAGGTAA+TGG | + | chr3_3:54154162-54154181 | Msa0458460:CDS | 20.0% |
| !! | CTAATTACATAACTTTACAT+GGG | + | chr3_3:54155126-54155145 | Msa0458460:CDS | 20.0% |
| !! | AAATGATTTCTGAATTTCAA+TGG | - | chr3_3:54155815-54155834 | None:intergenic | 20.0% |
| !! | CTACAACAAAATATAAAAGA+AGG | + | chr3_3:54156434-54156453 | Msa0458460:intron | 20.0% |
| !!! | AAGCTATCTTGAAAATTTTA+TGG | + | chr3_3:54156494-54156513 | Msa0458460:intron | 20.0% |
| !! | ATAATAATCGCTTATTTCAA+AGG | - | chr3_3:54156674-54156693 | None:intergenic | 20.0% |
| !! | TGTGTTTATAGTATCAAATA+TGG | + | chr3_3:54157015-54157034 | Msa0458460:three_prime_UTR | 20.0% |
| !! | AATATGAACCTTTGAGAAAA+GGG | - | chr3_3:54153287-54153306 | None:intergenic | 25.0% |
| !! | AAATATGAACCTTTGAGAAA+AGG | - | chr3_3:54153288-54153307 | None:intergenic | 25.0% |
| ! | CAAAGATGAATTTGGAAAAT+GGG | + | chr3_3:54153917-54153936 | Msa0458460:CDS | 25.0% |
| ! | CAGTGATCATTAATTGAAAA+AGG | - | chr3_3:54153949-54153968 | None:intergenic | 25.0% |
| !!! | ATGTGGAAAATTGATTTTTC+AGG | + | chr3_3:54154156-54154175 | Msa0458460:CDS | 25.0% |
| ! | TTTGAATTATGAAGCGAATT+CGG | - | chr3_3:54154447-54154466 | None:intergenic | 25.0% |
| ! | AAGGAAAAGTTGGAAAATTT+AGG | + | chr3_3:54154498-54154517 | Msa0458460:CDS | 25.0% |
| ! | AGGAAAAGTTGGAAAATTTA+GGG | + | chr3_3:54154499-54154518 | Msa0458460:CDS | 25.0% |
| ! | GAACTAATTAACTTATAAGC+CGG | - | chr3_3:54154798-54154817 | None:intergenic | 25.0% |
| !!! | AAGAGAAAAAGGTTTTGATT+TGG | + | chr3_3:54154881-54154900 | Msa0458460:CDS | 25.0% |
| ! | TCCAATGCTCTATATTTATA+CGG | - | chr3_3:54154942-54154961 | None:intergenic | 25.0% |
| ! | GCTAATTACATAACTTTACA+TGG | + | chr3_3:54155125-54155144 | Msa0458460:CDS | 25.0% |
| ! | TAGGTCAAAATTGAAAGATT+AGG | - | chr3_3:54155388-54155407 | None:intergenic | 25.0% |
| ! | ATAACATAAGAAGAAGATTC+AGG | - | chr3_3:54155886-54155905 | None:intergenic | 25.0% |
| ! | GTTTATAGTATCAAATATGG+AGG | + | chr3_3:54157018-54157037 | Msa0458460:three_prime_UTR | 25.0% |
| ! | CAACAGTATGTATATACATT+TGG | + | chr3_3:54157071-54157090 | Msa0458460:three_prime_UTR | 25.0% |
| ! | TGTAACTTGTATAACTGATC+AGG | - | chr3_3:54152984-54153003 | None:intergenic | 30.0% |
| AATGATGAATGATCTGAACT+TGG | - | chr3_3:54153157-54153176 | None:intergenic | 30.0% | |
| !!! | AGCAATAAAAGTGCTTTTAC+AGG | - | chr3_3:54153183-54153202 | None:intergenic | 30.0% |
| ! | AATGAAAACCCTTTTCTCAA+AGG | + | chr3_3:54153276-54153295 | Msa0458460:five_prime_UTR | 30.0% |
| ! | AGTTCTTCATCTGAAACTAA+TGG | + | chr3_3:54153445-54153464 | Msa0458460:CDS | 30.0% |
| ATATTGTTCTGTGTCTGTTA+AGG | - | chr3_3:54153495-54153514 | None:intergenic | 30.0% | |
| AACAAGATTTGCAAATTCTG+AGG | - | chr3_3:54153560-54153579 | None:intergenic | 30.0% | |
| TTAAGGTAAGGTTCTATAGA+TGG | - | chr3_3:54153616-54153635 | None:intergenic | 30.0% | |
| ! | GAACTTTTCTCTGTTTTGTA+TGG | + | chr3_3:54153724-54153743 | Msa0458460:CDS | 30.0% |
| TGAATGTCCAAAGATGAATT+TGG | + | chr3_3:54153909-54153928 | Msa0458460:CDS | 30.0% | |
| ! | CCATTTTCCAAATTCATCTT+TGG | - | chr3_3:54153919-54153938 | None:intergenic | 30.0% |
| CCAAAGATGAATTTGGAAAA+TGG | + | chr3_3:54153916-54153935 | Msa0458460:CDS | 30.0% | |
| !!! | AGTGATGTTTTGTTTTGTGT+TGG | + | chr3_3:54154042-54154061 | Msa0458460:CDS | 30.0% |
| !!! | GTGATGTTTTGTTTTGTGTT+GGG | + | chr3_3:54154043-54154062 | Msa0458460:CDS | 30.0% |
| AAGAAATCAAGTGTGTTAGA+AGG | + | chr3_3:54154070-54154089 | Msa0458460:CDS | 30.0% | |
| !! | GATTTCTAGAATCCAAAATG+TGG | + | chr3_3:54154139-54154158 | Msa0458460:CDS | 30.0% |
| TTACAGCAGAACAAAAAGAT+TGG | + | chr3_3:54154218-54154237 | Msa0458460:CDS | 30.0% | |
| !! | AGAAGCTCTAAAACAGTATT+GGG | - | chr3_3:54154255-54154274 | None:intergenic | 30.0% |
| ATCTTCTTGTGATTCTCATT+TGG | + | chr3_3:54154311-54154330 | Msa0458460:CDS | 30.0% | |
| ! | GCATTGATACTTATTGAGTA+TGG | + | chr3_3:54154360-54154379 | Msa0458460:CDS | 30.0% |
| GATACTTATTGAGTATGGAT+TGG | + | chr3_3:54154365-54154384 | Msa0458460:CDS | 30.0% | |
| ! | TTGCTTGCAAATTTTTCTCA+GGG | + | chr3_3:54154416-54154435 | Msa0458460:CDS | 30.0% |
| GAATTCGCTTCATAATTCAA+AGG | + | chr3_3:54154446-54154465 | Msa0458460:CDS | 30.0% | |
| !!! | CTTATGTAGTTTTGAGTCAA+AGG | + | chr3_3:54154479-54154498 | Msa0458460:CDS | 30.0% |
| !! | TTTTGAGTCAAAGGAAAAGT+TGG | + | chr3_3:54154488-54154507 | Msa0458460:CDS | 30.0% |
| ATTAACTTATAAGCCGGATA+TGG | - | chr3_3:54154792-54154811 | None:intergenic | 30.0% | |
| ATATTCGAGTATAAACCAGT+CGG | + | chr3_3:54154822-54154841 | Msa0458460:CDS | 30.0% | |
| TACAATATGGGAAGAGAAAA+AGG | + | chr3_3:54154870-54154889 | Msa0458460:CDS | 30.0% | |
| TTATACGGAAATGAAAGTGA+AGG | - | chr3_3:54154927-54154946 | None:intergenic | 30.0% | |
| TCCGTATAAATATAGAGCAT+TGG | + | chr3_3:54154938-54154957 | Msa0458460:CDS | 30.0% | |
| ATGGAGTTAGATAAGTTTCT+AGG | + | chr3_3:54154996-54155015 | Msa0458460:CDS | 30.0% | |
| ! | AGTTATGTAATTAGCCTCTA+TGG | - | chr3_3:54155120-54155139 | None:intergenic | 30.0% |
| ATTACATAACTTTACATGGG+AGG | + | chr3_3:54155129-54155148 | Msa0458460:CDS | 30.0% | |
| TAGAATTCAGAAGAAGAATC+AGG | + | chr3_3:54155187-54155206 | Msa0458460:CDS | 30.0% | |
| !! | CACATATGCTTTTAGGAAAA+AGG | - | chr3_3:54155842-54155861 | None:intergenic | 30.0% |
| TGGTAAAATAGAACTTGCAA+AGG | + | chr3_3:54156077-54156096 | Msa0458460:CDS | 30.0% | |
| TCATCAGAAAAATCAACGAA+AGG | + | chr3_3:54156164-54156183 | Msa0458460:CDS | 30.0% | |
| AACTCAAGAAGCTATACATT+TGG | + | chr3_3:54156956-54156975 | Msa0458460:three_prime_UTR | 30.0% | |
| CAAGACTAATTAGGTGAATA+TGG | - | chr3_3:54157129-54157148 | None:intergenic | 30.0% | |
| ! | TAAAGAGTGCAAGACTAATT+AGG | - | chr3_3:54157138-54157157 | None:intergenic | 30.0% |
| ATGTAATGTAACTGTACAAG+AGG | - | chr3_3:54157166-54157185 | None:intergenic | 30.0% | |
| TATAAAGAGATTCATACCTC+TGG | + | chr3_3:54157189-54157208 | Msa0458460:three_prime_UTR | 30.0% | |
| ! | AGTTCAACACTTTAGCTCAA+AGG | + | chr3_3:54153334-54153353 | Msa0458460:five_prime_UTR | 35.0% |
| ! | GTTCAACACTTTAGCTCAAA+GGG | + | chr3_3:54153335-54153354 | Msa0458460:five_prime_UTR | 35.0% |
| TCAAAGGGTTGTTAGAAAAG+TGG | + | chr3_3:54153350-54153369 | Msa0458460:five_prime_UTR | 35.0% | |
| GACACAGAACAATATTGTCT+TGG | + | chr3_3:54153500-54153519 | Msa0458460:CDS | 35.0% | |
| !! | AGGTTGATTGGTTTAAGGTA+AGG | - | chr3_3:54153628-54153647 | None:intergenic | 35.0% |
| !! | CTACAAGGTTGATTGGTTTA+AGG | - | chr3_3:54153633-54153652 | None:intergenic | 35.0% |
| ! | AAAGTCTCTACAAGGTTGAT+TGG | - | chr3_3:54153640-54153659 | None:intergenic | 35.0% |
| CTTTAGCAGAACTCTATCAA+CGG | + | chr3_3:54153656-54153675 | Msa0458460:CDS | 35.0% | |
| ! | TTCTCTGTTTTGTATGGTCT+TGG | + | chr3_3:54153730-54153749 | Msa0458460:CDS | 35.0% |
| ATGGTTGAGGTTTGAAAGAA+GGG | + | chr3_3:54153834-54153853 | Msa0458460:CDS | 35.0% | |
| ! | ACTTGTTGGTGTTTGTTCAA+TGG | + | chr3_3:54153864-54153883 | Msa0458460:CDS | 35.0% |
| !! | GGTAATGGATTATGTTCAGA+AGG | + | chr3_3:54154177-54154196 | Msa0458460:CDS | 35.0% |
| !! | CAGAAGCTCTAAAACAGTAT+TGG | - | chr3_3:54154256-54154275 | None:intergenic | 35.0% |
| ! | TCTCATTTGGCTTCAATTGT+TGG | + | chr3_3:54154324-54154343 | Msa0458460:CDS | 35.0% |
| ! | CTTGCTTGCAAATTTTTCTC+AGG | + | chr3_3:54154415-54154434 | Msa0458460:CDS | 35.0% |
| ! | GTTGTACTATTTTCTCAGTC+AGG | + | chr3_3:54154536-54154555 | Msa0458460:CDS | 35.0% |
| AGTCTTGCATTGCATCAATT+AGG | + | chr3_3:54154645-54154664 | Msa0458460:CDS | 35.0% | |
| GTCTTGCATTGCATCAATTA+GGG | + | chr3_3:54154646-54154665 | Msa0458460:CDS | 35.0% | |
| TTCGATGAAGCAGTTGAATT+AGG | + | chr3_3:54154714-54154733 | Msa0458460:CDS | 35.0% | |
| GCTAGAACAAAGCATAAACA+AGG | + | chr3_3:54154762-54154781 | Msa0458460:CDS | 35.0% | |
| TAAACAAGGTCAACCATATC+CGG | + | chr3_3:54154776-54154795 | Msa0458460:CDS | 35.0% | |
| !! | AGAGAGAGCATTGTACAATA+TGG | + | chr3_3:54154857-54154876 | Msa0458460:CDS | 35.0% |
| !! | GAGAGAGCATTGTACAATAT+GGG | + | chr3_3:54154858-54154877 | Msa0458460:CDS | 35.0% |
| AGGAGAAGCAAATAAAGGAA+GGG | + | chr3_3:54154970-54154989 | Msa0458460:CDS | 35.0% | |
| GCAAATAAAGGAAGGGATTA+TGG | + | chr3_3:54154977-54154996 | Msa0458460:CDS | 35.0% | |
| ! | ACCTGATTGTTTAGAGTTGA+GGG | + | chr3_3:54155031-54155050 | Msa0458460:CDS | 35.0% |
| !! | TAGAGCTTTGTTAACCATAG+AGG | + | chr3_3:54155103-54155122 | Msa0458460:CDS | 35.0% |
| GGATGCAATTATACCAACAA+TGG | + | chr3_3:54155219-54155238 | Msa0458460:CDS | 35.0% | |
| CAAAGAACCAACATCATCAA+CGG | - | chr3_3:54155249-54155268 | None:intergenic | 35.0% | |
| ! | AGTGCTACTGCTACATATAT+AGG | - | chr3_3:54155407-54155426 | None:intergenic | 35.0% |
| CGCGTGTTAGTAAATACAAT+TGG | + | chr3_3:54155602-54155621 | Msa0458460:intron | 35.0% | |
| GCTCAGATTAAACTGTCAAA+AGG | + | chr3_3:54155663-54155682 | Msa0458460:intron | 35.0% | |
| AGAGGCTAATTTATGAAGGA+TGG | + | chr3_3:54155737-54155756 | Msa0458460:CDS | 35.0% | |
| ! | CTGCTAACACATATGCTTTT+AGG | - | chr3_3:54155849-54155868 | None:intergenic | 35.0% |
| ! | TGTCTTGTGCAATATTTTGC+AGG | + | chr3_3:54156020-54156039 | Msa0458460:intron | 35.0% |
| !! | TTTGCAGGCATTGAATAACA+TGG | + | chr3_3:54156035-54156054 | Msa0458460:intron | 35.0% |
| !! | TTGCAGGCATTGAATAACAT+GGG | + | chr3_3:54156036-54156055 | Msa0458460:intron | 35.0% |
| !! | TAACATGGGGAGTATTTATG+TGG | + | chr3_3:54156050-54156069 | Msa0458460:CDS | 35.0% |
| ACAACAATGCACTTGCAATT+AGG | + | chr3_3:54156106-54156125 | Msa0458460:CDS | 35.0% | |
| ! | CTATAAGGGTATGTCCTTAA+AGG | - | chr3_3:54156318-54156337 | None:intergenic | 35.0% |
| GACATACCCTTATAGATACA+GGG | + | chr3_3:54156323-54156342 | Msa0458460:CDS | 35.0% | |
| GCTTTAATCAATGTGCAGAT+AGG | - | chr3_3:54156378-54156397 | None:intergenic | 35.0% | |
| GCTTATGAACATGTTGTAAG+TGG | + | chr3_3:54156533-54156552 | Msa0458460:intron | 35.0% | |
| AAGCAGTTGTAAGACTTTCT+GGG | - | chr3_3:54156573-54156592 | None:intergenic | 35.0% | |
| TAAGCAGTTGTAAGACTTTC+TGG | - | chr3_3:54156574-54156593 | None:intergenic | 35.0% | |
| ATGTGAGAGACTATTTGGAT+TGG | - | chr3_3:54156621-54156640 | None:intergenic | 35.0% | |
| TCATCATGTGAGAGACTATT+TGG | - | chr3_3:54156626-54156645 | None:intergenic | 35.0% | |
| ! | AGATGAAGCATTTGAAGATC+AGG | - | chr3_3:54156792-54156811 | None:intergenic | 35.0% |
| ! | AGCTTGACAATCTTTAAGAG+CGG | - | chr3_3:54156853-54156872 | None:intergenic | 35.0% |
| CCTTTGACATAAATCAAGTG+TGG | - | chr3_3:54156904-54156923 | None:intergenic | 35.0% | |
| CCACACTTGATTTATGTCAA+AGG | + | chr3_3:54156901-54156920 | Msa0458460:CDS | 35.0% | |
| TGGATGAATCAGAAGAAAGA+TGG | + | chr3_3:54156976-54156995 | Msa0458460:three_prime_UTR | 35.0% | |
| TCTGTTAAGGTTGTGAGGTT+TGG | - | chr3_3:54153482-54153501 | None:intergenic | 40.0% | |
| GGTTCAATAGTGTCAGTTGA+AGG | - | chr3_3:54153595-54153614 | None:intergenic | 40.0% | |
| GTTCTGCTAAAGTCTCTACA+AGG | - | chr3_3:54153648-54153667 | None:intergenic | 40.0% | |
| GAAGATGTCTTAGAAATGCG+CGG | + | chr3_3:54153770-54153789 | Msa0458460:CDS | 40.0% | |
| CATGGTTGAGGTTTGAAAGA+AGG | + | chr3_3:54153833-54153852 | Msa0458460:CDS | 40.0% | |
| AGAAGGGATGATGAACTTGT+TGG | + | chr3_3:54153850-54153869 | Msa0458460:CDS | 40.0% | |
| !! | GGTGTTTGTTCAATGGATTG+TGG | + | chr3_3:54153871-54153890 | Msa0458460:CDS | 40.0% |
| !! | GTTTGTTCAATGGATTGTGG+TGG | + | chr3_3:54153874-54153893 | Msa0458460:CDS | 40.0% |
| GTGTGTTTGTTTGTCTGATG+AGG | + | chr3_3:54154017-54154036 | Msa0458460:CDS | 40.0% | |
| !! | CCACAAAGCATTGCATTCAA+TGG | - | chr3_3:54154117-54154136 | None:intergenic | 40.0% |
| CCATTGAATGCAATGCTTTG+TGG | + | chr3_3:54154114-54154133 | Msa0458460:CDS | 40.0% | |
| TTGAATGCAATGCTTTGTGG+TGG | + | chr3_3:54154117-54154136 | Msa0458460:CDS | 40.0% | |
| ! | AGCTTCTGTCATTTGCCAAT+AGG | + | chr3_3:54154268-54154287 | Msa0458460:CDS | 40.0% |
| !!! | TGCCAATAGGTTTTGTTGTG+AGG | + | chr3_3:54154281-54154300 | Msa0458460:CDS | 40.0% |
| CTCCTCACAACAAAACCTAT+TGG | - | chr3_3:54154286-54154305 | None:intergenic | 40.0% | |
| ! | GTACTATTTTCTCAGTCAGG+TGG | + | chr3_3:54154539-54154558 | Msa0458460:CDS | 40.0% |
| GAAAACAACAGCGATGTTGT+TGG | + | chr3_3:54154584-54154603 | Msa0458460:CDS | 40.0% | |
| CACCTGCTATGGAATAAACA+TGG | - | chr3_3:54154740-54154759 | None:intergenic | 40.0% | |
| TGTTTATTCCATAGCAGGTG+TGG | + | chr3_3:54154740-54154759 | Msa0458460:CDS | 40.0% | |
| AGTCGAGGAGAAGCAAATAA+AGG | + | chr3_3:54154965-54154984 | Msa0458460:CDS | 40.0% | |
| GAGGAGAAGCAAATAAAGGA+AGG | + | chr3_3:54154969-54154988 | Msa0458460:CDS | 40.0% | |
| ! | CACCTGATTGTTTAGAGTTG+AGG | + | chr3_3:54155030-54155049 | Msa0458460:CDS | 40.0% |
| ! | ATTGTTTAGAGTTGAGGGCT+TGG | + | chr3_3:54155036-54155055 | Msa0458460:CDS | 40.0% |
| ACTTTACATGGGAGGATCAA+AGG | + | chr3_3:54155137-54155156 | Msa0458460:CDS | 40.0% | |
| GAGGATCAAAGGTGAATGTT+TGG | + | chr3_3:54155148-54155167 | Msa0458460:CDS | 40.0% | |
| AGAAGAATCAGGCTGATTGT+TGG | + | chr3_3:54155198-54155217 | Msa0458460:CDS | 40.0% | |
| !! | CGTTGATGATGTTGGTTCTT+TGG | + | chr3_3:54155247-54155266 | Msa0458460:CDS | 40.0% |
| CTAAAGATGCTTACCTCAAG+AGG | - | chr3_3:54155340-54155359 | None:intergenic | 40.0% | |
| CTATGTGTGAGTATCATGTC+TGG | + | chr3_3:54155528-54155547 | Msa0458460:intron | 40.0% | |
| CAGGAGAGGCTAATTTATGA+AGG | + | chr3_3:54155733-54155752 | Msa0458460:CDS | 40.0% | |
| ! | GGATGGATTCTATACGATAC+TGG | + | chr3_3:54155754-54155773 | Msa0458460:CDS | 40.0% |
| GCACTTAAATGTCCTTCAGA+CGG | + | chr3_3:54155922-54155941 | Msa0458460:CDS | 40.0% | |
| !! | TGCAGGCATTGAATAACATG+GGG | + | chr3_3:54156037-54156056 | Msa0458460:intron | 40.0% |
| !! | GGGAGTATTTATGTGGATTG+TGG | + | chr3_3:54156057-54156076 | Msa0458460:CDS | 40.0% |
| ! | GACAATGCTGATTGAGAAAG+CGG | + | chr3_3:54156203-54156222 | Msa0458460:CDS | 40.0% |
| AGAATACTGTGATCGTGAGA+TGG | + | chr3_3:54156257-54156276 | Msa0458460:CDS | 40.0% | |
| CAACACACCTTGATCCTTTA+AGG | + | chr3_3:54156301-54156320 | Msa0458460:CDS | 40.0% | |
| GGTATGTCCTTAAAGGATCA+AGG | - | chr3_3:54156311-54156330 | None:intergenic | 40.0% | |
| GGACATACCCTTATAGATAC+AGG | + | chr3_3:54156322-54156341 | Msa0458460:CDS | 40.0% | |
| ! | GGTTCAACTGTTTTCGTGTA+AGG | + | chr3_3:54156455-54156474 | Msa0458460:intron | 40.0% |
| ! | GCATATATGACTAGTGCTGA+TGG | + | chr3_3:54156710-54156729 | Msa0458460:intron | 40.0% |
| AGCAGTAGAAGAACTCACTA+AGG | + | chr3_3:54156752-54156771 | Msa0458460:CDS | 40.0% | |
| TAAATCAAGTGTGGCTGCAT+GGG | - | chr3_3:54156895-54156914 | None:intergenic | 40.0% | |
| ATAAATCAAGTGTGGCTGCA+TGG | - | chr3_3:54156896-54156915 | None:intergenic | 40.0% | |
| CTCTCTCTCTCTCTCTCTAA+TGG | + | chr3_3:54152922-54152941 | Msa0458460:five_prime_UTR | 45.0% | |
| AACCTGCTATGCTCAGAAAG+TGG | - | chr3_3:54152959-54152978 | None:intergenic | 45.0% | |
| CTGTGTCTGTTAAGGTTGTG+AGG | - | chr3_3:54153487-54153506 | None:intergenic | 45.0% | |
| GACATCTTCTGAGTAGCTTC+TGG | - | chr3_3:54153759-54153778 | None:intergenic | 45.0% | |
| CAAAGGTTGTGTTGTCTGCA+TGG | + | chr3_3:54153815-54153834 | Msa0458460:CDS | 45.0% | |
| TTGTGTTGTCTGCATGGTTG+AGG | + | chr3_3:54153821-54153840 | Msa0458460:CDS | 45.0% | |
| ! | TTTTCTCAGTCAGGTGGCAA+TGG | + | chr3_3:54154545-54154564 | Msa0458460:CDS | 45.0% |
| ! | AAGAGTGTGCTGCAGAGAAA+TGG | + | chr3_3:54154616-54154635 | Msa0458460:CDS | 45.0% |
| GGCCATGTTTATTCCATAGC+AGG | + | chr3_3:54154735-54154754 | Msa0458460:CDS | 45.0% | |
| TCGAGTATAAACCAGTCGGT+TGG | + | chr3_3:54154826-54154845 | Msa0458460:CDS | 45.0% | |
| TCTTGATACATCCAACCGAC+TGG | - | chr3_3:54154840-54154859 | None:intergenic | 45.0% | |
| !! | TAGAGCATTGGAGAAAGTCG+AGG | + | chr3_3:54154950-54154969 | Msa0458460:CDS | 45.0% |
| GCCCTCAACTCTAAACAATC+AGG | - | chr3_3:54155035-54155054 | None:intergenic | 45.0% | |
| CATCAACGGAAGACCATTGT+TGG | - | chr3_3:54155235-54155254 | None:intergenic | 45.0% | |
| !! | TGGTCTTCCGTTGATGATGT+TGG | + | chr3_3:54155239-54155258 | Msa0458460:CDS | 45.0% |
| AAACCATTCCACCTCAATGC+AGG | + | chr3_3:54155714-54155733 | Msa0458460:CDS | 45.0% | |
| ! | AATTAGCCTCTCCTGCATTG+AGG | - | chr3_3:54155728-54155747 | None:intergenic | 45.0% |
| GAAAGCGGAAAGTAATGCCT+CGG | + | chr3_3:54156218-54156237 | Msa0458460:CDS | 45.0% | |
| TGATCGTTTCTCATATGCCG+AGG | - | chr3_3:54156238-54156257 | None:intergenic | 45.0% | |
| CTGCTGCCCTGTATCTATAA+GGG | - | chr3_3:54156332-54156351 | None:intergenic | 45.0% | |
| ! | GTTGTAAGACTTTCTGGGAG+AGG | - | chr3_3:54156568-54156587 | None:intergenic | 45.0% |
| !! | TCCCATTGACTCGTAAAACG+CGG | - | chr3_3:54156820-54156839 | None:intergenic | 45.0% |
| !! | TGCCACTTTCTGAGCATAGC+AGG | + | chr3_3:54152954-54152973 | Msa0458460:five_prime_UTR | 50.0% |
| CGCGGAAGATGTGATGTCAA+AGG | + | chr3_3:54153798-54153817 | Msa0458460:CDS | 50.0% | |
| GGTGGCAATGGAAGAAAGCA+TGG | + | chr3_3:54154557-54154576 | Msa0458460:CDS | 50.0% | |
| TGTTCTAGCCACACCTGCTA+TGG | - | chr3_3:54154751-54154770 | None:intergenic | 50.0% | |
| CAGATGCTAGAGAATGAGCC+TGG | + | chr3_3:54155281-54155300 | Msa0458460:CDS | 50.0% | |
| AACTCTAGCAGGCTCTTTCC+AGG | - | chr3_3:54155302-54155321 | None:intergenic | 50.0% | |
| GAGACAGACGAAACTCTAGC+AGG | - | chr3_3:54155313-54155332 | None:intergenic | 50.0% | |
| GTCTGTCTCTACTCCTCTTG+AGG | + | chr3_3:54155324-54155343 | Msa0458460:CDS | 50.0% | |
| CGACACGATTCTGACACATG+TGG | + | chr3_3:54155464-54155483 | Msa0458460:intron | 50.0% | |
| TCTCCTGCATTGAGGTGGAA+TGG | - | chr3_3:54155720-54155739 | None:intergenic | 50.0% | |
| ATTCCACCTCAATGCAGGAG+AGG | + | chr3_3:54155719-54155738 | Msa0458460:CDS | 50.0% | |
| ATCGTGACGAGGCTGTTACA+AGG | + | chr3_3:54155779-54155798 | Msa0458460:CDS | 50.0% | |
| TCGTGACGAGGCTGTTACAA+GGG | + | chr3_3:54155780-54155799 | Msa0458460:CDS | 50.0% | |
| AGGCACACAAGAGCTCATCA+AGG | + | chr3_3:54156126-54156145 | Msa0458460:CDS | 50.0% | |
| CACAAGAGCTCATCAAGGTC+TGG | + | chr3_3:54156131-54156150 | Msa0458460:CDS | 50.0% | |
| CCTGCTGCCCTGTATCTATA+AGG | - | chr3_3:54156333-54156352 | None:intergenic | 50.0% | |
| CCTTATAGATACAGGGCAGC+AGG | + | chr3_3:54156330-54156349 | Msa0458460:CDS | 50.0% | |
| ! | AGCCGCGTTTTACGAGTCAA+TGG | + | chr3_3:54156815-54156834 | Msa0458460:CDS | 50.0% |
| ! | GCCGCGTTTTACGAGTCAAT+GGG | + | chr3_3:54156816-54156835 | Msa0458460:CDS | 50.0% |
| TAGAAATGCGCGGCAGAACG+CGG | + | chr3_3:54153780-54153799 | Msa0458460:CDS | 55.0% | |
| AGGCTGCAATGCGCAGTTTG+CGG | + | chr3_3:54155683-54155702 | Msa0458460:CDS | 55.0% | |
| TAGCCTCTCCTGCATTGAGG+TGG | - | chr3_3:54155725-54155744 | None:intergenic | 55.0% | |
| ! | CGATACTGGCTATCGTGACG+AGG | + | chr3_3:54155768-54155787 | Msa0458460:CDS | 55.0% |
| CCTTTGCGAAGTCCGTCTGA+AGG | - | chr3_3:54155937-54155956 | None:intergenic | 55.0% | |
| ! | CCTTCAGACGGACTTCGCAA+AGG | + | chr3_3:54155934-54155953 | Msa0458460:CDS | 55.0% |
| CTGTGATCGTGAGATGGCGA+AGG | + | chr3_3:54156263-54156282 | Msa0458460:CDS | 55.0% | |
| TCAAGTGTGGCTGCATGGGT+TGG | - | chr3_3:54156891-54156910 | None:intergenic | 55.0% | |
| TGCAATGCGCAGTTTGCGGC+TGG | + | chr3_3:54155687-54155706 | Msa0458460:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 54152907 | 54157221 | 54152907 | ID=Msa0458460;Name=Msa0458460 |
| chr3_3 | mRNA | 54152907 | 54157221 | 54152907 | ID=Msa0458460-mRNA-1;Parent=Msa0458460;Name=Msa0458460-mRNA-1;_AED=0.02;_eAED=0.02;_QI=484|1|1|1|1|1|4|277|925 |
| chr3_3 | exon | 54152907 | 54155345 | 54152907 | ID=Msa0458460-mRNA-1:exon:10644;Parent=Msa0458460-mRNA-1 |
| chr3_3 | exon | 54155669 | 54155960 | 54155669 | ID=Msa0458460-mRNA-1:exon:10645;Parent=Msa0458460-mRNA-1 |
| chr3_3 | exon | 54156042 | 54156351 | 54156042 | ID=Msa0458460-mRNA-1:exon:10646;Parent=Msa0458460-mRNA-1 |
| chr3_3 | exon | 54156724 | 54157221 | 54156724 | ID=Msa0458460-mRNA-1:exon:10647;Parent=Msa0458460-mRNA-1 |
| chr3_3 | five_prime_UTR | 54152907 | 54153390 | 54152907 | ID=Msa0458460-mRNA-1:five_prime_utr;Parent=Msa0458460-mRNA-1 |
| chr3_3 | CDS | 54153391 | 54155345 | 54153391 | ID=Msa0458460-mRNA-1:cds;Parent=Msa0458460-mRNA-1 |
| chr3_3 | CDS | 54155669 | 54155960 | 54155669 | ID=Msa0458460-mRNA-1:cds;Parent=Msa0458460-mRNA-1 |
| chr3_3 | CDS | 54156042 | 54156351 | 54156042 | ID=Msa0458460-mRNA-1:cds;Parent=Msa0458460-mRNA-1 |
| chr3_3 | CDS | 54156724 | 54156944 | 54156724 | ID=Msa0458460-mRNA-1:cds;Parent=Msa0458460-mRNA-1 |
| chr3_3 | three_prime_UTR | 54156945 | 54157221 | 54156945 | ID=Msa0458460-mRNA-1:three_prime_utr;Parent=Msa0458460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
