Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367110 | AES70780.2 | 74.807 | 647 | 107 | 6 | 17 | 655 | 1008 | 1606 | 0.0 | 911 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367110 | G7IV29 | 74.807 | 647 | 107 | 6 | 17 | 655 | 1008 | 1606 | 0.0 | 911 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0367110 | Msa1335780 | -0.811257 | 7.663206e-51 | -8.615850e-47 |
| Msa0367110 | Msa1414750 | -0.816383 | 5.687608e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367110 | MtrunA17_Chr3g0108821 | 70.904 | 653 | 129 | 7 | 16 | 655 | 1198 | 1802 | 0.0 | 878 |
| Msa0367110 | MtrunA17_Chr3g0108811 | 57.687 | 761 | 152 | 11 | 16 | 655 | 1219 | 1930 | 0.0 | 768 |
| Msa0367110 | MtrunA17_Chr3g0108171 | 67.019 | 567 | 104 | 6 | 16 | 507 | 1069 | 1627 | 0.0 | 712 |
| Msa0367110 | MtrunA17_Chr3g0108171 | 61.708 | 363 | 110 | 6 | 316 | 655 | 1611 | 1967 | 1.50e-118 | 389 |
| Msa0367110 | MtrunA17_Chr3g0107931 | 56.320 | 712 | 188 | 14 | 16 | 655 | 1227 | 1887 | 0.0 | 673 |
| Msa0367110 | MtrunA17_Chr3g0091861 | 51.962 | 739 | 217 | 15 | 17 | 647 | 1150 | 1858 | 0.0 | 640 |
| Msa0367110 | MtrunA17_Chr3g0108111 | 67.703 | 418 | 120 | 5 | 16 | 422 | 150 | 563 | 0.0 | 551 |
| Msa0367110 | MtrunA17_Chr3g0105521 | 50.776 | 644 | 220 | 15 | 48 | 655 | 1023 | 1605 | 9.95e-176 | 541 |
| Msa0367110 | MtrunA17_Chr3g0105521 | 25.896 | 251 | 147 | 8 | 28 | 246 | 636 | 879 | 4.53e-12 | 69.7 |
| Msa0367110 | MtrunA17_Chr3g0105551 | 46.237 | 744 | 244 | 14 | 48 | 655 | 1141 | 1864 | 1.58e-174 | 543 |
| Msa0367110 | MtrunA17_Chr3g0105551 | 29.146 | 199 | 124 | 6 | 28 | 216 | 754 | 945 | 5.93e-11 | 66.2 |
| Msa0367110 | MtrunA17_Chr3g0108071 | 59.705 | 474 | 114 | 6 | 16 | 482 | 349 | 752 | 5.75e-172 | 516 |
| Msa0367110 | MtrunA17_Chr3g0108151 | 84.483 | 290 | 26 | 3 | 366 | 655 | 1273 | 1543 | 1.60e-150 | 473 |
| Msa0367110 | MtrunA17_Chr3g0108151 | 81.933 | 238 | 43 | 0 | 17 | 254 | 973 | 1210 | 2.56e-122 | 397 |
| Msa0367110 | MtrunA17_Chr3g0108011 | 63.158 | 380 | 97 | 7 | 16 | 382 | 1236 | 1585 | 1.23e-133 | 431 |
| Msa0367110 | MtrunA17_Chr3g0105591 | 49.351 | 462 | 131 | 9 | 258 | 655 | 13 | 435 | 1.54e-117 | 358 |
| Msa0367110 | MtrunA17_Chr3g0107261 | 58.333 | 324 | 98 | 4 | 369 | 655 | 76 | 399 | 3.49e-111 | 340 |
| Msa0367110 | MtrunA17_Chr3g0108091 | 54.046 | 346 | 93 | 4 | 144 | 482 | 3 | 289 | 2.14e-109 | 339 |
| Msa0367110 | MtrunA17_Chr3g0107271 | 70.124 | 241 | 65 | 4 | 19 | 259 | 8 | 241 | 5.81e-109 | 329 |
| Msa0367110 | MtrunA17_Chr3g0105471 | 68.826 | 247 | 76 | 1 | 409 | 655 | 1 | 246 | 9.69e-106 | 320 |
| Msa0367110 | MtrunA17_Chr3g0097011 | 49.757 | 412 | 111 | 11 | 314 | 655 | 12 | 397 | 3.66e-103 | 319 |
| Msa0367110 | MtrunA17_Chr2g0304131 | 59.259 | 270 | 89 | 4 | 407 | 655 | 46 | 315 | 8.78e-91 | 284 |
| Msa0367110 | MtrunA17_Chr3g0097601 | 62.222 | 225 | 83 | 2 | 19 | 243 | 9 | 231 | 7.79e-85 | 267 |
| Msa0367110 | MtrunA17_Chr3g0091851 | 35.770 | 643 | 259 | 19 | 82 | 655 | 758 | 1315 | 2.16e-84 | 289 |
| Msa0367110 | MtrunA17_Chr7g0223911 | 93.182 | 132 | 9 | 0 | 524 | 655 | 29 | 160 | 1.06e-81 | 255 |
| Msa0367110 | MtrunA17_Chr3g0105481 | 41.882 | 425 | 162 | 7 | 48 | 444 | 1055 | 1422 | 1.37e-81 | 281 |
| Msa0367110 | MtrunA17_Chr3g0108761 | 68.041 | 194 | 41 | 2 | 469 | 655 | 1 | 180 | 2.55e-78 | 247 |
| Msa0367110 | MtrunA17_Chr3g0105601 | 49.818 | 275 | 98 | 5 | 48 | 315 | 261 | 502 | 5.43e-73 | 244 |
| Msa0367110 | MtrunA17_Chr3g0087641 | 56.557 | 244 | 81 | 4 | 369 | 605 | 121 | 346 | 2.92e-72 | 237 |
| Msa0367110 | MtrunA17_Chr3g0096701 | 38.936 | 470 | 199 | 18 | 6 | 467 | 7 | 396 | 3.22e-69 | 239 |
| Msa0367110 | MtrunA17_Chr3g0096701 | 31.579 | 171 | 91 | 6 | 258 | 427 | 402 | 547 | 1.71e-13 | 73.9 |
| Msa0367110 | MtrunA17_Chr3g0107641 | 62.632 | 190 | 63 | 2 | 473 | 655 | 4 | 192 | 2.96e-67 | 218 |
| Msa0367110 | MtrunA17_Chr3g0107081 | 48.649 | 259 | 75 | 5 | 11 | 265 | 4 | 208 | 1.20e-64 | 212 |
| Msa0367110 | MtrunA17_Chr3g0096771 | 51.822 | 247 | 82 | 5 | 423 | 655 | 66 | 289 | 1.20e-62 | 209 |
| Msa0367110 | MtrunA17_Chr3g0105501 | 57.513 | 193 | 70 | 5 | 55 | 244 | 1 | 184 | 2.93e-62 | 206 |
| Msa0367110 | MtrunA17_Chr3g0107171 | 69.014 | 142 | 37 | 1 | 521 | 655 | 242 | 383 | 1.34e-56 | 196 |
| Msa0367110 | MtrunA17_Chr2g0288311 | 61.017 | 177 | 37 | 4 | 95 | 267 | 30 | 178 | 7.31e-54 | 182 |
| Msa0367110 | MtrunA17_Chr1g0160951 | 35.689 | 283 | 161 | 8 | 26 | 298 | 1007 | 1278 | 1.38e-41 | 162 |
| Msa0367110 | MtrunA17_Chr3g0096801 | 49.359 | 156 | 61 | 2 | 161 | 315 | 2 | 140 | 1.51e-36 | 134 |
| Msa0367110 | MtrunA17_Chr7g0229711 | 49.677 | 155 | 55 | 3 | 493 | 647 | 5 | 136 | 2.68e-35 | 130 |
| Msa0367110 | MtrunA17_Chr3g0107201 | 64.078 | 103 | 31 | 2 | 161 | 258 | 2 | 103 | 4.95e-30 | 125 |
| Msa0367110 | MtrunA17_Chr5g0439121 | 31.452 | 372 | 185 | 15 | 30 | 382 | 1294 | 1614 | 1.50e-29 | 125 |
| Msa0367110 | MtrunA17_Chr5g0439121 | 35.897 | 117 | 68 | 2 | 83 | 199 | 1033 | 1142 | 1.28e-11 | 68.2 |
| Msa0367110 | MtrunA17_Chr5g0439121 | 25.974 | 231 | 153 | 8 | 30 | 245 | 727 | 954 | 7.95e-11 | 65.9 |
| Msa0367110 | MtrunA17_Chr3g0108201 | 54.167 | 120 | 39 | 2 | 396 | 499 | 1 | 120 | 5.84e-29 | 112 |
| Msa0367110 | MtrunA17_Chr3g0100241 | 36.139 | 202 | 108 | 9 | 53 | 239 | 8 | 203 | 1.08e-23 | 99.8 |
| Msa0367110 | MtrunA17_Chr3g0112521 | 61.972 | 71 | 27 | 0 | 577 | 647 | 6 | 76 | 3.69e-23 | 93.6 |
| Msa0367110 | MtrunA17_Chr3g0106021 | 55.422 | 83 | 36 | 1 | 16 | 98 | 306 | 387 | 5.99e-21 | 95.5 |
| Msa0367110 | MtrunA17_Chr3g0100261 | 36.207 | 174 | 97 | 4 | 76 | 239 | 1052 | 1221 | 8.79e-21 | 97.8 |
| Msa0367110 | MtrunA17_Chr3g0105491 | 60.274 | 73 | 22 | 1 | 590 | 655 | 1 | 73 | 3.01e-19 | 82.4 |
| Msa0367110 | MtrunA17_Chr5g0443761 | 29.004 | 231 | 148 | 3 | 28 | 245 | 865 | 1092 | 3.94e-19 | 92.4 |
| Msa0367110 | MtrunA17_Chr8g0360991 | 31.461 | 178 | 111 | 3 | 67 | 239 | 1037 | 1208 | 4.96e-19 | 92.0 |
| Msa0367110 | MtrunA17_Chr3g0099591 | 33.702 | 181 | 103 | 7 | 59 | 228 | 1025 | 1199 | 2.57e-18 | 89.7 |
| Msa0367110 | MtrunA17_Chr3g0109131 | 55.263 | 76 | 27 | 1 | 587 | 655 | 97 | 172 | 2.08e-16 | 77.4 |
| Msa0367110 | MtrunA17_Chr3g0107181 | 30.114 | 176 | 106 | 5 | 45 | 214 | 771 | 935 | 4.38e-11 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 112 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGAGAGGGCTTAGATTT+TGG | 0.159009 | 3_1:-62642397 | None:intergenic |
| TTAAGCAGGTTAGTGAAATA+AGG | 0.202729 | 3_1:+62641699 | Msa0367110:intron |
| CTGAAGCTGAAATATCATTT+TGG | 0.247256 | 3_1:-62640543 | None:intergenic |
| TATTCTCCACTTCTATAATA+AGG | 0.256772 | 3_1:+62640098 | Msa0367110:CDS |
| TTCTCAACCATGAAAGGTTT+TGG | 0.264984 | 3_1:-62640048 | None:intergenic |
| TTCCTTGGTAGCCTGCTTCT+TGG | 0.268195 | 3_1:-62642945 | None:intergenic |
| CTCATAATCCAAATGATTCT+TGG | 0.276110 | 3_1:-62642627 | None:intergenic |
| TCTCTCTCCAAAACCTTTCA+TGG | 0.290175 | 3_1:+62640041 | Msa0367110:CDS |
| GCATATTATTGAAGATGATT+TGG | 0.296423 | 3_1:+62640171 | Msa0367110:CDS |
| CTATTCCATCATTGCTGCTT+TGG | 0.305678 | 3_1:+62643125 | Msa0367110:three_prime_UTR |
| TTTGTTGGTATTTCTAAATC+AGG | 0.310925 | 3_1:-62641256 | None:intergenic |
| TCTTGAGATATTTGTATATC+AGG | 0.318289 | 3_1:-62642899 | None:intergenic |
| GAGGAGAAGCTATGGCTATT+TGG | 0.320195 | 3_1:-62642136 | None:intergenic |
| ATTGTTCAAAACAGCTTTAG+AGG | 0.335517 | 3_1:-62643038 | None:intergenic |
| TCTTTCGTGGTTTGTGGACT+AGG | 0.349515 | 3_1:-62641005 | None:intergenic |
| TGTTGAGGAACAATTATCTA+AGG | 0.351479 | 3_1:+62642357 | Msa0367110:CDS |
| TGATGATACTGTTGTTCTCT+TGG | 0.352700 | 3_1:-62641750 | None:intergenic |
| CATAGTGTCTTGGATGTATT+AGG | 0.356946 | 3_1:+62642779 | Msa0367110:CDS |
| ATCTGGAATTGCTTCGCTAT+TGG | 0.362433 | 3_1:+62640922 | Msa0367110:CDS |
| AGAGGCTTTGTTATGGCAAT+AGG | 0.372321 | 3_1:-62642158 | None:intergenic |
| TAAAGAGCTTCCTCAGTTAG+AGG | 0.377241 | 3_1:+62640309 | Msa0367110:CDS |
| AGCTTTGAAAGACATTGATT+TGG | 0.377272 | 3_1:+62639970 | Msa0367110:CDS |
| CTACTAGATGCGCGCAACTT+TGG | 0.387519 | 3_1:+62642830 | Msa0367110:CDS |
| TAAGCAGGTTAGTGAAATAA+GGG | 0.392956 | 3_1:+62641700 | Msa0367110:intron |
| GGGATGTGCCTACAACTTAC+TGG | 0.398189 | 3_1:+62642730 | Msa0367110:CDS |
| ACTAGTCTCCAAGAATCATT+TGG | 0.400921 | 3_1:+62642619 | Msa0367110:CDS |
| CTGAGGAAGCTCTTTACATA+TGG | 0.402310 | 3_1:-62640302 | None:intergenic |
| GCAAAATCTTTCGTGGTTTG+TGG | 0.403233 | 3_1:-62641011 | None:intergenic |
| CCCAACCGCAAAATCTTTCG+TGG | 0.403776 | 3_1:-62641018 | None:intergenic |
| TTTGGTATGCCTTTCATTGT+GGG | 0.407062 | 3_1:+62643143 | Msa0367110:three_prime_UTR |
| ATTACCACTATCGTGGCCTT+TGG | 0.414318 | 3_1:-62640976 | None:intergenic |
| ATTTCCCATTCATTTATTGC+AGG | 0.414592 | 3_1:+62639832 | Msa0367110:CDS |
| ACAAATGATACTTTCTACTT+TGG | 0.415861 | 3_1:-62639915 | None:intergenic |
| CCTTTCATGGTTGAGAATCA+AGG | 0.419943 | 3_1:+62640054 | Msa0367110:CDS |
| CAGTAAGTCTTCTTAGCCTT+GGG | 0.423401 | 3_1:-62640240 | None:intergenic |
| TTTCTCCAAGTGAACGTTGT+TGG | 0.427016 | 3_1:-62641406 | None:intergenic |
| ATGCAACACTTCAACTTCCT+TGG | 0.428386 | 3_1:-62642960 | None:intergenic |
| CAATTCCTGCAATAAATGAA+TGG | 0.432842 | 3_1:-62639837 | None:intergenic |
| CTCATGCCACTCTGAATTTG+TGG | 0.434852 | 3_1:+62642802 | Msa0367110:CDS |
| TAGCTCAGCCAGTAAGTTGT+AGG | 0.440715 | 3_1:-62642738 | None:intergenic |
| AATATAGTCTAATAGCCAAT+AGG | 0.441053 | 3_1:-62643091 | None:intergenic |
| CTTTGGTATGCCTTTCATTG+TGG | 0.443848 | 3_1:+62643142 | Msa0367110:three_prime_UTR |
| ACAGTAAGTCTTCTTAGCCT+TGG | 0.445196 | 3_1:-62640241 | None:intergenic |
| AGTGGTAAGAGGCTTTGTTA+TGG | 0.453888 | 3_1:-62642165 | None:intergenic |
| ATTATTAGATTCCAAGAAGC+AGG | 0.456629 | 3_1:+62642934 | Msa0367110:CDS |
| AGCTCTTTACATATGGGGAT+TGG | 0.457821 | 3_1:-62640295 | None:intergenic |
| ATAAGTTCATGCTCCGCCTC+TGG | 0.458917 | 3_1:-62641223 | None:intergenic |
| AATTCCTGCAATAAATGAAT+GGG | 0.462525 | 3_1:-62639836 | None:intergenic |
| GCATACCAAAGCAGCAATGA+TGG | 0.469476 | 3_1:-62643130 | None:intergenic |
| TACTGCCGTCAAACATTCTC+AGG | 0.470573 | 3_1:+62641433 | Msa0367110:CDS |
| ATACCTTTGGATCGCATTGA+AGG | 0.472253 | 3_1:-62642448 | None:intergenic |
| CCTTGATTCTCAACCATGAA+AGG | 0.475313 | 3_1:-62640054 | None:intergenic |
| ACCAAGCCTCTGCCATGACC+AGG | 0.478680 | 3_1:+62640438 | Msa0367110:CDS |
| CAGCTTGAAATTGAATTCCC+TGG | 0.479469 | 3_1:-62640456 | None:intergenic |
| CCAAGACACTATGAGTTTCA+AGG | 0.479878 | 3_1:-62642769 | None:intergenic |
| GAGAACTTACCTCTCTTGAC+TGG | 0.488573 | 3_1:+62642647 | Msa0367110:CDS |
| GAATTCCCTGGTCATGGCAG+AGG | 0.490496 | 3_1:-62640444 | None:intergenic |
| CCTTGAAACTCATAGTGTCT+TGG | 0.491342 | 3_1:+62642769 | Msa0367110:CDS |
| CCCTGGTCATGGCAGAGGCT+TGG | 0.494544 | 3_1:-62640439 | None:intergenic |
| GTTGATGAATGAACAATCAA+TGG | 0.500702 | 3_1:+62641382 | Msa0367110:CDS |
| TCAACATCCTGAGTGGTAAG+AGG | 0.507965 | 3_1:-62642176 | None:intergenic |
| GATTGATGTTCAAACAACAT+TGG | 0.509800 | 3_1:+62641040 | Msa0367110:CDS |
| GAACAATATAATTCAAGAAG+AGG | 0.509861 | 3_1:+62643054 | Msa0367110:CDS |
| TAATTGTTCCTCAACAATTG+AGG | 0.510334 | 3_1:-62642350 | None:intergenic |
| TGAGGAAGCTCTTTACATAT+GGG | 0.514200 | 3_1:-62640301 | None:intergenic |
| GAGACCAAAGGCCACGATAG+TGG | 0.514259 | 3_1:+62640972 | Msa0367110:CDS |
| CTTTCATGGTTGAGAATCAA+GGG | 0.524527 | 3_1:+62640055 | Msa0367110:CDS |
| GAAATTGAATTCCCTGGTCA+TGG | 0.525871 | 3_1:-62640450 | None:intergenic |
| ATGGACCAACAACGTTCACT+TGG | 0.532238 | 3_1:+62641401 | Msa0367110:CDS |
| TCTCGCTTTGGAGAGACTCA+TGG | 0.533231 | 3_1:+62639880 | Msa0367110:CDS |
| ACAAAGGTTCCCACAATGAA+AGG | 0.536212 | 3_1:-62643152 | None:intergenic |
| ATTAACACTAATGATGATCA+AGG | 0.544462 | 3_1:+62642200 | Msa0367110:CDS |
| TTCACTGCGTAATAGATACA+AGG | 0.546061 | 3_1:+62642709 | Msa0367110:CDS |
| TTTGAATTTGTGTAGGAATG+TGG | 0.547333 | 3_1:+62642107 | Msa0367110:intron |
| CATTTATTGCAGGAATTGAG+TGG | 0.553799 | 3_1:+62639842 | Msa0367110:CDS |
| ATTTATTGCAGGAATTGAGT+GGG | 0.554762 | 3_1:+62639843 | Msa0367110:CDS |
| GTTGGATAGTGTAGAAAGGC+GGG | 0.557473 | 3_1:+62642868 | Msa0367110:CDS |
| GAGGAAATATTTGCAAGTGA+AGG | 0.557524 | 3_1:+62640361 | Msa0367110:CDS |
| GGAATCTAATAATTCTTGCA+CGG | 0.557997 | 3_1:-62642924 | None:intergenic |
| TTCCAAGAAGCAGGCTACCA+AGG | 0.559736 | 3_1:+62642943 | Msa0367110:CDS |
| GGCTTTGTTATGGCAATAGG+AGG | 0.563399 | 3_1:-62642155 | None:intergenic |
| GGCAATAGGAGGAGAAGCTA+TGG | 0.564107 | 3_1:-62642144 | None:intergenic |
| GGCGAAGGAATGACAAGAGA+GGG | 0.569917 | 3_1:-62642409 | None:intergenic |
| AAGAGAAGCAGATGAGCTAG+AGG | 0.571056 | 3_1:+62640342 | Msa0367110:CDS |
| ATTTACCTGAGAATGTTTGA+CGG | 0.571537 | 3_1:-62641438 | None:intergenic |
| AAAAGTAACCTCAATTGTTG+AGG | 0.584038 | 3_1:+62642342 | Msa0367110:CDS |
| TAGCCACCTTATTATAGAAG+TGG | 0.587803 | 3_1:-62640104 | None:intergenic |
| ATTCTCATATAATACAATTG+TGG | 0.587997 | 3_1:-62640127 | None:intergenic |
| AGTGAAATAAGGGTTGATGA+AGG | 0.589332 | 3_1:+62641710 | Msa0367110:CDS |
| ATTGGTTGGATAGTGTAGAA+AGG | 0.594670 | 3_1:+62642864 | Msa0367110:CDS |
| ACTCCTTCAATGCGATCCAA+AGG | 0.595069 | 3_1:+62642445 | Msa0367110:CDS |
| ATCATTAGAGCCTCTAACTG+AGG | 0.599898 | 3_1:-62640319 | None:intergenic |
| ACACAAGTTGACTTCTCCAC+AGG | 0.600078 | 3_1:+62641064 | Msa0367110:CDS |
| AACAAAGCCTCTTACCACTC+AGG | 0.601172 | 3_1:+62642169 | Msa0367110:CDS |
| CAATATAATTCAAGAAGAGG+CGG | 0.607131 | 3_1:+62643057 | Msa0367110:CDS |
| TGACGAAACTTGACACCCAA+GGG | 0.609571 | 3_1:-62643192 | None:intergenic |
| GCAGGAATTGAGTGGGAATG+TGG | 0.613039 | 3_1:+62639850 | Msa0367110:CDS |
| ATGACGAAACTTGACACCCA+AGG | 0.617950 | 3_1:-62643193 | None:intergenic |
| AGGCGAAGGAATGACAAGAG+AGG | 0.623207 | 3_1:-62642410 | None:intergenic |
| GAGGAAGCTCTTTACATATG+GGG | 0.630491 | 3_1:-62640300 | None:intergenic |
| ACAAGGAAACCAGTCAAGAG+AGG | 0.641650 | 3_1:-62642656 | None:intergenic |
| CAACAAAGACATGCTTCCCA+AGG | 0.641688 | 3_1:+62640224 | Msa0367110:CDS |
| AATGAAAGAAACACCAGAGG+CGG | 0.642526 | 3_1:+62641210 | Msa0367110:CDS |
| CCAAGCCTCTGCCATGACCA+GGG | 0.642782 | 3_1:+62640439 | Msa0367110:CDS |
| TCTCCACTTCTATAATAAGG+TGG | 0.647817 | 3_1:+62640101 | Msa0367110:CDS |
| GGTTGGATAGTGTAGAAAGG+CGG | 0.656658 | 3_1:+62642867 | Msa0367110:CDS |
| GTTAATATCAACATCCTGAG+TGG | 0.662801 | 3_1:-62642183 | None:intergenic |
| TGAAGGTGATGATCACAAAG+TGG | 0.676951 | 3_1:+62640378 | Msa0367110:CDS |
| TCACTGCGTAATAGATACAA+GGG | 0.680220 | 3_1:+62642710 | Msa0367110:CDS |
| TTTGTGTAGGAATGTGGTGA+CGG | 0.683577 | 3_1:+62642113 | Msa0367110:intron |
| CAATTACAAAGAGAGACCAA+AGG | 0.720626 | 3_1:+62640960 | Msa0367110:CDS |
| GTAGCTCCACAAATTCAGAG+TGG | 0.773151 | 3_1:-62642808 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAATACTATTAAATATTTTG+AGG | + | chr3_1:62641088-62641107 | Msa0367110:intron | 10.0% |
| !!! | TTATTATTATTCAATTTTCA+TGG | + | chr3_1:62641876-62641895 | Msa0367110:intron | 10.0% |
| !! | TATATCAAAAAGAAAAAATT+TGG | + | chr3_1:62641938-62641957 | Msa0367110:intron | 10.0% |
| !!! | AATATTACAAGTTTTAGATT+TGG | - | chr3_1:62640409-62640428 | None:intergenic | 15.0% |
| !!! | TTTTAAAAACTATTACATGT+TGG | + | chr3_1:62640600-62640619 | Msa0367110:intron | 15.0% |
| !!! | TACATTTTTTTTCTTTGTAT+AGG | - | chr3_1:62641585-62641604 | None:intergenic | 15.0% |
| !! | TAAATGAATTAAGGATAAAA+TGG | - | chr3_1:62641980-62641999 | None:intergenic | 15.0% |
| !!! | AATTTTTGGTAAATGAATTA+AGG | - | chr3_1:62641989-62642008 | None:intergenic | 15.0% |
| !!! | CATTAAAAGAATGTAATTTT+TGG | - | chr3_1:62642003-62642022 | None:intergenic | 15.0% |
| !! | ATTCTCATATAATACAATTG+TGG | - | chr3_1:62640130-62640149 | None:intergenic | 20.0% |
| !! | GCATGATATGTAATTATTTA+CGG | - | chr3_1:62640626-62640645 | None:intergenic | 20.0% |
| !!! | ATAAGTATTTCTAAAACGTA+AGG | + | chr3_1:62640710-62640729 | Msa0367110:intron | 20.0% |
| !!! | TAAGTATTTCTAAAACGTAA+GGG | + | chr3_1:62640711-62640730 | Msa0367110:intron | 20.0% |
| !! | TATTTAATAGTATTTACCTG+TGG | - | chr3_1:62641083-62641102 | None:intergenic | 20.0% |
| !!! | CTATTAAATATTTTGAGGTT+AGG | + | chr3_1:62641093-62641112 | Msa0367110:intron | 20.0% |
| !! | AAATATATTGTCATTGTGAT+TGG | - | chr3_1:62641157-62641176 | None:intergenic | 20.0% |
| !!! | TGAGCTTTATATTCTTAATA+CGG | - | chr3_1:62641481-62641500 | None:intergenic | 20.0% |
| !! | TCATGAAAATGTAAATTAGT+TGG | - | chr3_1:62641520-62641539 | None:intergenic | 20.0% |
| !!! | ACATCTTTTTAATTTTAAGC+AGG | + | chr3_1:62641685-62641704 | Msa0367110:intron | 20.0% |
| !!! | TTATTCAATTTTCATGGAAT+TGG | + | chr3_1:62641882-62641901 | Msa0367110:intron | 20.0% |
| !! | TTGTTTATTTGAATTTGTGT+AGG | + | chr3_1:62642100-62642119 | Msa0367110:intron | 20.0% |
| !! | ATTAAACTTCCAAATGAAAA+GGG | - | chr3_1:62642271-62642290 | None:intergenic | 20.0% |
| !! | AATTAAACTTCCAAATGAAA+AGG | - | chr3_1:62642272-62642291 | None:intergenic | 20.0% |
| !!! | AGCTTTTAAGATAAAATGAA+GGG | - | chr3_1:62642483-62642502 | None:intergenic | 20.0% |
| !!! | AAGCTTTTAAGATAAAATGA+AGG | - | chr3_1:62642484-62642503 | None:intergenic | 20.0% |
| !!! | ATTTTGTGCTAAAAAAACAA+AGG | + | chr3_1:62642505-62642524 | Msa0367110:intron | 20.0% |
| !! | TAAAAAATATTGAAGGACAA+AGG | - | chr3_1:62643171-62643190 | None:intergenic | 20.0% |
| !!! | TTCAATATTTTTTATCCCTT+GGG | + | chr3_1:62643177-62643196 | Msa0367110:three_prime_UTR | 20.0% |
| ! | AATTCCTGCAATAAATGAAT+GGG | - | chr3_1:62639839-62639858 | None:intergenic | 25.0% |
| ! | ACAAATGATACTTTCTACTT+TGG | - | chr3_1:62639918-62639937 | None:intergenic | 25.0% |
| ! | TATTCTCCACTTCTATAATA+AGG | + | chr3_1:62640098-62640117 | Msa0367110:CDS | 25.0% |
| ! | GCATATTATTGAAGATGATT+TGG | + | chr3_1:62640171-62640190 | Msa0367110:CDS | 25.0% |
| ! | TGTTGTAGACATAAAAATTG+AGG | - | chr3_1:62640209-62640228 | None:intergenic | 25.0% |
| ! | TCATGCATTAGTATTGTTAA+AGG | + | chr3_1:62640640-62640659 | Msa0367110:intron | 25.0% |
| ! | AATTAAAGCTTCTATTCGAT+AGG | - | chr3_1:62640749-62640768 | None:intergenic | 25.0% |
| ! | TGATGATATACAATTGAAAG+CGG | + | chr3_1:62640832-62640851 | Msa0367110:intron | 25.0% |
| ! | TATGCTTGAGTTACTATATA+AGG | + | chr3_1:62640870-62640889 | Msa0367110:intron | 25.0% |
| !! | TTTGTTGGTATTTCTAAATC+AGG | - | chr3_1:62641259-62641278 | None:intergenic | 25.0% |
| !!! | GAAATCACTTTTAAGTTTGT+TGG | - | chr3_1:62641274-62641293 | None:intergenic | 25.0% |
| ! | CAAACTTAAAAGTGATTTCT+AGG | + | chr3_1:62641275-62641294 | Msa0367110:intron | 25.0% |
| ! | TATCTAACTCAATTCAAACA+TGG | - | chr3_1:62641301-62641320 | None:intergenic | 25.0% |
| !! | AGCTTTATATTCTTAATACG+GGG | - | chr3_1:62641479-62641498 | None:intergenic | 25.0% |
| !! | GAGCTTTATATTCTTAATAC+GGG | - | chr3_1:62641480-62641499 | None:intergenic | 25.0% |
| !!! | ATTCTTTTTTACTGAAATGG+TGG | - | chr3_1:62641621-62641640 | None:intergenic | 25.0% |
| !!! | CTCATTCTTTTTTACTGAAA+TGG | - | chr3_1:62641624-62641643 | None:intergenic | 25.0% |
| ! | AATTCAATTCCTACTTGTAA+AGG | - | chr3_1:62641650-62641669 | None:intergenic | 25.0% |
| ! | AAAAGACCAAGTTAATATGA+AGG | - | chr3_1:62641803-62641822 | None:intergenic | 25.0% |
| !! | ATTCTTTTAATGCATGCTTT+TGG | + | chr3_1:62642011-62642030 | Msa0367110:intron | 25.0% |
| ! | ATTAACACTAATGATGATCA+AGG | + | chr3_1:62642200-62642219 | Msa0367110:CDS | 25.0% |
| ! | TTATTCTTTCCTTTACTTTC+AGG | + | chr3_1:62642533-62642552 | Msa0367110:intron | 25.0% |
| !!! | AATCTTCTACATTTTGAGAA+GGG | - | chr3_1:62642562-62642581 | None:intergenic | 25.0% |
| !!! | AAATCTTCTACATTTTGAGA+AGG | - | chr3_1:62642563-62642582 | None:intergenic | 25.0% |
| ! | TCTTGAGATATTTGTATATC+AGG | - | chr3_1:62642902-62642921 | None:intergenic | 25.0% |
| ! | GAACAATATAATTCAAGAAG+AGG | + | chr3_1:62643054-62643073 | Msa0367110:CDS | 25.0% |
| ! | AATATAGTCTAATAGCCAAT+AGG | - | chr3_1:62643094-62643113 | None:intergenic | 25.0% |
| ! | CAAGGGATAAAAAATATTGA+AGG | - | chr3_1:62643178-62643197 | None:intergenic | 25.0% |
| !!! | CTTCAATATTTTTTATCCCT+TGG | + | chr3_1:62643176-62643195 | Msa0367110:three_prime_UTR | 25.0% |
| !!! | TAAGACGTTTTAGTTCTTTT+CGG | - | chr3_1:62643226-62643245 | None:intergenic | 25.0% |
| ATTTCCCATTCATTTATTGC+AGG | + | chr3_1:62639832-62639851 | Msa0367110:CDS | 30.0% | |
| CAATTCCTGCAATAAATGAA+TGG | - | chr3_1:62639840-62639859 | None:intergenic | 30.0% | |
| ATTTATTGCAGGAATTGAGT+GGG | + | chr3_1:62639843-62639862 | Msa0367110:CDS | 30.0% | |
| !! | AGCTTTGAAAGACATTGATT+TGG | + | chr3_1:62639970-62639989 | Msa0367110:CDS | 30.0% |
| GAATTGTCAAAAACTATCTC+TGG | + | chr3_1:62640498-62640517 | Msa0367110:CDS | 30.0% | |
| !! | GAAATATCATTTTGGAAGTC+TGG | - | chr3_1:62640538-62640557 | None:intergenic | 30.0% |
| ! | CTGAAGCTGAAATATCATTT+TGG | - | chr3_1:62640546-62640565 | None:intergenic | 30.0% |
| GATTGATGTTCAAACAACAT+TGG | + | chr3_1:62641040-62641059 | Msa0367110:CDS | 30.0% | |
| AAAAATGAAAGAAACACCAG+AGG | + | chr3_1:62641207-62641226 | Msa0367110:CDS | 30.0% | |
| AATGCTTATGTTCTTGTTAC+AGG | + | chr3_1:62641358-62641377 | Msa0367110:intron | 30.0% | |
| ! | GTTGATGAATGAACAATCAA+TGG | + | chr3_1:62641382-62641401 | Msa0367110:CDS | 30.0% |
| ATTTACCTGAGAATGTTTGA+CGG | - | chr3_1:62641441-62641460 | None:intergenic | 30.0% | |
| GCTTTATATTCTTAATACGG+GGG | - | chr3_1:62641478-62641497 | None:intergenic | 30.0% | |
| TTAAGCAGGTTAGTGAAATA+AGG | + | chr3_1:62641699-62641718 | Msa0367110:intron | 30.0% | |
| TAAGCAGGTTAGTGAAATAA+GGG | + | chr3_1:62641700-62641719 | Msa0367110:intron | 30.0% | |
| ACAAAGCCTTCATATTAACT+TGG | + | chr3_1:62641794-62641813 | Msa0367110:intron | 30.0% | |
| !!! | CATGCTTTTGGTTTTTGTAA+GGG | + | chr3_1:62642023-62642042 | Msa0367110:intron | 30.0% |
| TTTGAATTTGTGTAGGAATG+TGG | + | chr3_1:62642107-62642126 | Msa0367110:intron | 30.0% | |
| ATTGAGAGAAACTGAACAAA+AGG | - | chr3_1:62642308-62642327 | None:intergenic | 30.0% | |
| AAAAGTAACCTCAATTGTTG+AGG | + | chr3_1:62642342-62642361 | Msa0367110:CDS | 30.0% | |
| TAATTGTTCCTCAACAATTG+AGG | - | chr3_1:62642353-62642372 | None:intergenic | 30.0% | |
| TGTTGAGGAACAATTATCTA+AGG | + | chr3_1:62642357-62642376 | Msa0367110:CDS | 30.0% | |
| !! | GAAGGAGTTTGAAATTTTTC+AGG | - | chr3_1:62642433-62642452 | None:intergenic | 30.0% |
| AGGGAGAAAATATATACCTT+TGG | - | chr3_1:62642464-62642483 | None:intergenic | 30.0% | |
| CTCATAATCCAAATGATTCT+TGG | - | chr3_1:62642630-62642649 | None:intergenic | 30.0% | |
| ! | GAACAGAAGGATTTTTAACA+AGG | - | chr3_1:62642676-62642695 | None:intergenic | 30.0% |
| ! | TTGTCTTTTAAACGAACAGA+AGG | - | chr3_1:62642689-62642708 | None:intergenic | 30.0% |
| !!! | ACTTTGGTTTTGATAAGGAT+TGG | + | chr3_1:62642846-62642865 | Msa0367110:CDS | 30.0% |
| GGAATCTAATAATTCTTGCA+CGG | - | chr3_1:62642927-62642946 | None:intergenic | 30.0% | |
| ATTATTAGATTCCAAGAAGC+AGG | + | chr3_1:62642934-62642953 | Msa0367110:CDS | 30.0% | |
| !! | AGAGATTTTAAGTCAACATG+TGG | + | chr3_1:62642991-62643010 | Msa0367110:CDS | 30.0% |
| ! | ATTGTTCAAAACAGCTTTAG+AGG | - | chr3_1:62643041-62643060 | None:intergenic | 30.0% |
| CAATATAATTCAAGAAGAGG+CGG | + | chr3_1:62643057-62643076 | Msa0367110:CDS | 30.0% | |
| CATTTATTGCAGGAATTGAG+TGG | + | chr3_1:62639842-62639861 | Msa0367110:CDS | 35.0% | |
| ! | TATGATGACATGCCTTTTTG+TGG | + | chr3_1:62640003-62640022 | Msa0367110:CDS | 35.0% |
| ! | ATGATGACATGCCTTTTTGT+GGG | + | chr3_1:62640004-62640023 | Msa0367110:CDS | 35.0% |
| !!! | AATTTTTGGGACCCACAAAA+AGG | - | chr3_1:62640018-62640037 | None:intergenic | 35.0% |
| ! | TGGAGAGAGAACGAATTTTT+GGG | - | chr3_1:62640031-62640050 | None:intergenic | 35.0% |
| ! | TTGGAGAGAGAACGAATTTT+TGG | - | chr3_1:62640032-62640051 | None:intergenic | 35.0% |
| ! | TTCTCAACCATGAAAGGTTT+TGG | - | chr3_1:62640051-62640070 | None:intergenic | 35.0% |
| CTTTCATGGTTGAGAATCAA+GGG | + | chr3_1:62640055-62640074 | Msa0367110:CDS | 35.0% | |
| TCTCCACTTCTATAATAAGG+TGG | + | chr3_1:62640101-62640120 | Msa0367110:CDS | 35.0% | |
| TAGCCACCTTATTATAGAAG+TGG | - | chr3_1:62640107-62640126 | None:intergenic | 35.0% | |
| TGAGGAAGCTCTTTACATAT+GGG | - | chr3_1:62640304-62640323 | None:intergenic | 35.0% | |
| GAGGAAATATTTGCAAGTGA+AGG | + | chr3_1:62640361-62640380 | Msa0367110:CDS | 35.0% | |
| !!! | TCAGCTTCAGATTTTGACTA+CGG | + | chr3_1:62640556-62640575 | Msa0367110:CDS | 35.0% |
| ! | ATTATGCTTTGCTGTAGATC+TGG | + | chr3_1:62640905-62640924 | Msa0367110:intron | 35.0% |
| CAATTACAAAGAGAGACCAA+AGG | + | chr3_1:62640960-62640979 | Msa0367110:CDS | 35.0% | |
| ! | GATTTTCATTACCACTATCG+TGG | - | chr3_1:62640986-62641005 | None:intergenic | 35.0% |
| ! | ACAAACCACGAAAGATTTTG+CGG | + | chr3_1:62641013-62641032 | Msa0367110:CDS | 35.0% |
| ATTGTGATTGGATTCAGAAG+TGG | - | chr3_1:62641145-62641164 | None:intergenic | 35.0% | |
| TTTCATGATGCACAATTAGC+TGG | + | chr3_1:62641532-62641551 | Msa0367110:intron | 35.0% | |
| CTACATTCTTTGTTACCCAT+GGG | - | chr3_1:62641560-62641579 | None:intergenic | 35.0% | |
| TCAATTCCTACTTGTAAAGG+TGG | - | chr3_1:62641647-62641666 | None:intergenic | 35.0% | |
| !! | AGTGAAATAAGGGTTGATGA+AGG | + | chr3_1:62641710-62641729 | Msa0367110:CDS | 35.0% |
| TGATGATACTGTTGTTCTCT+TGG | - | chr3_1:62641753-62641772 | None:intergenic | 35.0% | |
| !!! | GCATGCTTTTGGTTTTTGTA+AGG | + | chr3_1:62642022-62642041 | Msa0367110:intron | 35.0% |
| GTTAATATCAACATCCTGAG+TGG | - | chr3_1:62642186-62642205 | None:intergenic | 35.0% | |
| !!! | GTTTGAAATTTTTCAGGCGA+AGG | - | chr3_1:62642427-62642446 | None:intergenic | 35.0% |
| ! | ACTAGTCTCCAAGAATCATT+TGG | + | chr3_1:62642619-62642638 | Msa0367110:CDS | 35.0% |
| TTCACTGCGTAATAGATACA+AGG | + | chr3_1:62642709-62642728 | Msa0367110:CDS | 35.0% | |
| TCACTGCGTAATAGATACAA+GGG | + | chr3_1:62642710-62642729 | Msa0367110:CDS | 35.0% | |
| CATAGTGTCTTGGATGTATT+AGG | + | chr3_1:62642779-62642798 | Msa0367110:CDS | 35.0% | |
| !!! | TGGTTTTGATAAGGATTGGT+TGG | + | chr3_1:62642850-62642869 | Msa0367110:CDS | 35.0% |
| ATTGGTTGGATAGTGTAGAA+AGG | + | chr3_1:62642864-62642883 | Msa0367110:CDS | 35.0% | |
| !! | GATTTTAAGTCAACATGTGG+AGG | + | chr3_1:62642994-62643013 | Msa0367110:CDS | 35.0% |
| TTTGGTATGCCTTTCATTGT+GGG | + | chr3_1:62643143-62643162 | Msa0367110:three_prime_UTR | 35.0% | |
| ! | TGTGGATCATTTTCTCGCTT+TGG | + | chr3_1:62639868-62639887 | Msa0367110:CDS | 40.0% |
| TCTCTCTCCAAAACCTTTCA+TGG | + | chr3_1:62640041-62640060 | Msa0367110:CDS | 40.0% | |
| CCTTGATTCTCAACCATGAA+AGG | - | chr3_1:62640057-62640076 | None:intergenic | 40.0% | |
| CCTTTCATGGTTGAGAATCA+AGG | + | chr3_1:62640054-62640073 | Msa0367110:CDS | 40.0% | |
| ! | CAGTAAGTCTTCTTAGCCTT+GGG | - | chr3_1:62640243-62640262 | None:intergenic | 40.0% |
| ACAGTAAGTCTTCTTAGCCT+TGG | - | chr3_1:62640244-62640263 | None:intergenic | 40.0% | |
| AGCTCTTTACATATGGGGAT+TGG | - | chr3_1:62640298-62640317 | None:intergenic | 40.0% | |
| GAGGAAGCTCTTTACATATG+GGG | - | chr3_1:62640303-62640322 | None:intergenic | 40.0% | |
| CTGAGGAAGCTCTTTACATA+TGG | - | chr3_1:62640305-62640324 | None:intergenic | 40.0% | |
| TAAAGAGCTTCCTCAGTTAG+AGG | + | chr3_1:62640309-62640328 | Msa0367110:CDS | 40.0% | |
| ATCATTAGAGCCTCTAACTG+AGG | - | chr3_1:62640322-62640341 | None:intergenic | 40.0% | |
| TGAAGGTGATGATCACAAAG+TGG | + | chr3_1:62640378-62640397 | Msa0367110:CDS | 40.0% | |
| GAAATTGAATTCCCTGGTCA+TGG | - | chr3_1:62640453-62640472 | None:intergenic | 40.0% | |
| CAGCTTGAAATTGAATTCCC+TGG | - | chr3_1:62640459-62640478 | None:intergenic | 40.0% | |
| ! | ATCTGGAATTGCTTCGCTAT+TGG | + | chr3_1:62640922-62640941 | Msa0367110:CDS | 40.0% |
| GCAAAATCTTTCGTGGTTTG+TGG | - | chr3_1:62641014-62641033 | None:intergenic | 40.0% | |
| AATGAAAGAAACACCAGAGG+CGG | + | chr3_1:62641210-62641229 | Msa0367110:CDS | 40.0% | |
| TTTCTCCAAGTGAACGTTGT+TGG | - | chr3_1:62641409-62641428 | None:intergenic | 40.0% | |
| GCTACATTCTTTGTTACCCA+TGG | - | chr3_1:62641561-62641580 | None:intergenic | 40.0% | |
| AATGAGCCACCTTTACAAGT+AGG | + | chr3_1:62641638-62641657 | Msa0367110:intron | 40.0% | |
| TTTGTGTAGGAATGTGGTGA+CGG | + | chr3_1:62642113-62642132 | Msa0367110:intron | 40.0% | |
| !! | AGAGGCTTTGTTATGGCAAT+AGG | - | chr3_1:62642161-62642180 | None:intergenic | 40.0% |
| !! | AGTGGTAAGAGGCTTTGTTA+TGG | - | chr3_1:62642168-62642187 | None:intergenic | 40.0% |
| TGATCAAGGTGAAGACACTT+CGG | + | chr3_1:62642214-62642233 | Msa0367110:intron | 40.0% | |
| ! | ACCTCATCACCCTTTTCATT+TGG | + | chr3_1:62642259-62642278 | Msa0367110:intron | 40.0% |
| TCCAAATGAAAAGGGTGATG+AGG | - | chr3_1:62642263-62642282 | None:intergenic | 40.0% | |
| ! | ACAAGAGAGGGCTTAGATTT+TGG | - | chr3_1:62642400-62642419 | None:intergenic | 40.0% |
| ATACCTTTGGATCGCATTGA+AGG | - | chr3_1:62642451-62642470 | None:intergenic | 40.0% | |
| CCAAGACACTATGAGTTTCA+AGG | - | chr3_1:62642772-62642791 | None:intergenic | 40.0% | |
| CCTTGAAACTCATAGTGTCT+TGG | + | chr3_1:62642769-62642788 | Msa0367110:CDS | 40.0% | |
| !!! | GCGCAACTTTGGTTTTGATA+AGG | + | chr3_1:62642841-62642860 | Msa0367110:CDS | 40.0% |
| ATGCAACACTTCAACTTCCT+TGG | - | chr3_1:62642963-62642982 | None:intergenic | 40.0% | |
| ! | CTATTCCATCATTGCTGCTT+TGG | + | chr3_1:62643125-62643144 | Msa0367110:three_prime_UTR | 40.0% |
| CTTTGGTATGCCTTTCATTG+TGG | + | chr3_1:62643142-62643161 | Msa0367110:three_prime_UTR | 40.0% | |
| ACAAAGGTTCCCACAATGAA+AGG | - | chr3_1:62643155-62643174 | None:intergenic | 40.0% | |
| CAACAAAGACATGCTTCCCA+AGG | + | chr3_1:62640224-62640243 | Msa0367110:CDS | 45.0% | |
| AAGAGAAGCAGATGAGCTAG+AGG | + | chr3_1:62640342-62640361 | Msa0367110:CDS | 45.0% | |
| ATTACCACTATCGTGGCCTT+TGG | - | chr3_1:62640979-62640998 | None:intergenic | 45.0% | |
| ! | TCTTTCGTGGTTTGTGGACT+AGG | - | chr3_1:62641008-62641027 | None:intergenic | 45.0% |
| ! | ACCACGAAAGATTTTGCGGT+TGG | + | chr3_1:62641017-62641036 | Msa0367110:CDS | 45.0% |
| ! | CCACGAAAGATTTTGCGGTT+GGG | + | chr3_1:62641018-62641037 | Msa0367110:CDS | 45.0% |
| ! | ACACAAGTTGACTTCTCCAC+AGG | + | chr3_1:62641064-62641083 | Msa0367110:CDS | 45.0% |
| AGTGGTAAGCACAGGATTTC+TGG | - | chr3_1:62641127-62641146 | None:intergenic | 45.0% | |
| GATTCAGAAGTGGTAAGCAC+AGG | - | chr3_1:62641135-62641154 | None:intergenic | 45.0% | |
| ATGGACCAACAACGTTCACT+TGG | + | chr3_1:62641401-62641420 | Msa0367110:CDS | 45.0% | |
| TACTGCCGTCAAACATTCTC+AGG | + | chr3_1:62641433-62641452 | Msa0367110:CDS | 45.0% | |
| GAGGAGAAGCTATGGCTATT+TGG | - | chr3_1:62642139-62642158 | None:intergenic | 45.0% | |
| !! | GGCTTTGTTATGGCAATAGG+AGG | - | chr3_1:62642158-62642177 | None:intergenic | 45.0% |
| AACAAAGCCTCTTACCACTC+AGG | + | chr3_1:62642169-62642188 | Msa0367110:CDS | 45.0% | |
| TCAACATCCTGAGTGGTAAG+AGG | - | chr3_1:62642179-62642198 | None:intergenic | 45.0% | |
| ACTCCTTCAATGCGATCCAA+AGG | + | chr3_1:62642445-62642464 | Msa0367110:CDS | 45.0% | |
| GAAGGGTCTCCTGAAAGTAA+AGG | - | chr3_1:62642545-62642564 | None:intergenic | 45.0% | |
| GAGAACTTACCTCTCTTGAC+TGG | + | chr3_1:62642647-62642666 | Msa0367110:CDS | 45.0% | |
| ACAAGGAAACCAGTCAAGAG+AGG | - | chr3_1:62642659-62642678 | None:intergenic | 45.0% | |
| TAGCTCAGCCAGTAAGTTGT+AGG | - | chr3_1:62642741-62642760 | None:intergenic | 45.0% | |
| CTCATGCCACTCTGAATTTG+TGG | + | chr3_1:62642802-62642821 | Msa0367110:CDS | 45.0% | |
| GTAGCTCCACAAATTCAGAG+TGG | - | chr3_1:62642811-62642830 | None:intergenic | 45.0% | |
| GGTTGGATAGTGTAGAAAGG+CGG | + | chr3_1:62642867-62642886 | Msa0367110:CDS | 45.0% | |
| GTTGGATAGTGTAGAAAGGC+GGG | + | chr3_1:62642868-62642887 | Msa0367110:CDS | 45.0% | |
| !!! | GCGGTTTTAAGTGCACCTAT+TGG | + | chr3_1:62643076-62643095 | Msa0367110:CDS | 45.0% |
| GCATACCAAAGCAGCAATGA+TGG | - | chr3_1:62643133-62643152 | None:intergenic | 45.0% | |
| TGACGAAACTTGACACCCAA+GGG | - | chr3_1:62643195-62643214 | None:intergenic | 45.0% | |
| ATGACGAAACTTGACACCCA+AGG | - | chr3_1:62643196-62643215 | None:intergenic | 45.0% | |
| !!! | AATAGTTTTTAAAAATATAT+TGG | - | chr3_1:62640594-62640613 | None:intergenic | 5.0% |
| GCAGGAATTGAGTGGGAATG+TGG | + | chr3_1:62639850-62639869 | Msa0367110:CDS | 50.0% | |
| !! | TCTCGCTTTGGAGAGACTCA+TGG | + | chr3_1:62639880-62639899 | Msa0367110:CDS | 50.0% |
| CCCAACCGCAAAATCTTTCG+TGG | - | chr3_1:62641021-62641040 | None:intergenic | 50.0% | |
| ATAAGTTCATGCTCCGCCTC+TGG | - | chr3_1:62641226-62641245 | None:intergenic | 50.0% | |
| CACAATTAGCTGGAGCCCAT+GGG | + | chr3_1:62641542-62641561 | Msa0367110:intron | 50.0% | |
| GGCAATAGGAGGAGAAGCTA+TGG | - | chr3_1:62642147-62642166 | None:intergenic | 50.0% | |
| GGCGAAGGAATGACAAGAGA+GGG | - | chr3_1:62642412-62642431 | None:intergenic | 50.0% | |
| AGGCGAAGGAATGACAAGAG+AGG | - | chr3_1:62642413-62642432 | None:intergenic | 50.0% | |
| GGGATGTGCCTACAACTTAC+TGG | + | chr3_1:62642730-62642749 | Msa0367110:CDS | 50.0% | |
| CTACTAGATGCGCGCAACTT+TGG | + | chr3_1:62642830-62642849 | Msa0367110:CDS | 50.0% | |
| TTCCAAGAAGCAGGCTACCA+AGG | + | chr3_1:62642943-62642962 | Msa0367110:CDS | 50.0% | |
| ! | TTCCTTGGTAGCCTGCTTCT+TGG | - | chr3_1:62642948-62642967 | None:intergenic | 50.0% |
| GAATTCCCTGGTCATGGCAG+AGG | - | chr3_1:62640447-62640466 | None:intergenic | 55.0% | |
| GAGACCAAAGGCCACGATAG+TGG | + | chr3_1:62640972-62640991 | Msa0367110:CDS | 55.0% | |
| GCACAATTAGCTGGAGCCCA+TGG | + | chr3_1:62641541-62641560 | Msa0367110:intron | 55.0% | |
| ACCAAGCCTCTGCCATGACC+AGG | + | chr3_1:62640438-62640457 | Msa0367110:CDS | 60.0% | |
| CCAAGCCTCTGCCATGACCA+GGG | + | chr3_1:62640439-62640458 | Msa0367110:CDS | 60.0% | |
| CCCTGGTCATGGCAGAGGCT+TGG | - | chr3_1:62640442-62640461 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 62639800 | 62643322 | 62639800 | ID=Msa0367110;Name=Msa0367110 |
| chr3_1 | mRNA | 62639800 | 62643322 | 62639800 | ID=Msa0367110-mRNA-1;Parent=Msa0367110;Name=Msa0367110-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|0.14|0.37|1|1|1|8|217|655 |
| chr3_1 | exon | 62639800 | 62640577 | 62639800 | ID=Msa0367110-mRNA-1:exon:12173;Parent=Msa0367110-mRNA-1 |
| chr3_1 | exon | 62640922 | 62641085 | 62640922 | ID=Msa0367110-mRNA-1:exon:12174;Parent=Msa0367110-mRNA-1 |
| chr3_1 | exon | 62641205 | 62641285 | 62641205 | ID=Msa0367110-mRNA-1:exon:12175;Parent=Msa0367110-mRNA-1 |
| chr3_1 | exon | 62641380 | 62641454 | 62641380 | ID=Msa0367110-mRNA-1:exon:12176;Parent=Msa0367110-mRNA-1 |
| chr3_1 | exon | 62641707 | 62641775 | 62641707 | ID=Msa0367110-mRNA-1:exon:12177;Parent=Msa0367110-mRNA-1 |
| chr3_1 | exon | 62642122 | 62642221 | 62642122 | ID=Msa0367110-mRNA-1:exon:12178;Parent=Msa0367110-mRNA-1 |
| chr3_1 | exon | 62642317 | 62642466 | 62642317 | ID=Msa0367110-mRNA-1:exon:12179;Parent=Msa0367110-mRNA-1 |
| chr3_1 | exon | 62642555 | 62643322 | 62642555 | ID=Msa0367110-mRNA-1:exon:12180;Parent=Msa0367110-mRNA-1 |
| chr3_1 | CDS | 62639800 | 62640577 | 62639800 | ID=Msa0367110-mRNA-1:cds;Parent=Msa0367110-mRNA-1 |
| chr3_1 | CDS | 62640922 | 62641085 | 62640922 | ID=Msa0367110-mRNA-1:cds;Parent=Msa0367110-mRNA-1 |
| chr3_1 | CDS | 62641205 | 62641285 | 62641205 | ID=Msa0367110-mRNA-1:cds;Parent=Msa0367110-mRNA-1 |
| chr3_1 | CDS | 62641380 | 62641454 | 62641380 | ID=Msa0367110-mRNA-1:cds;Parent=Msa0367110-mRNA-1 |
| chr3_1 | CDS | 62641707 | 62641775 | 62641707 | ID=Msa0367110-mRNA-1:cds;Parent=Msa0367110-mRNA-1 |
| chr3_1 | CDS | 62642122 | 62642221 | 62642122 | ID=Msa0367110-mRNA-1:cds;Parent=Msa0367110-mRNA-1 |
| chr3_1 | CDS | 62642317 | 62642466 | 62642317 | ID=Msa0367110-mRNA-1:cds;Parent=Msa0367110-mRNA-1 |
| chr3_1 | CDS | 62642555 | 62643105 | 62642555 | ID=Msa0367110-mRNA-1:cds;Parent=Msa0367110-mRNA-1 |
| chr3_1 | three_prime_UTR | 62643106 | 62643322 | 62643106 | ID=Msa0367110-mRNA-1:three_prime_utr;Parent=Msa0367110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
