Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1335780 | XP_003589224.2 | 95.833 | 240 | 8 | 1 | 1 | 240 | 1 | 238 | 8.30e-168 | 472 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1335780 | sp|Q9SX77|SDH5_ARATH | 65.285 | 193 | 67 | 0 | 48 | 240 | 65 | 257 | 2.12e-92 | 275 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1335780 | G7I4F8 | 95.833 | 240 | 8 | 1 | 1 | 240 | 1 | 238 | 3.97e-168 | 472 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0063350 | Msa1335780 | 0.811751 | 5.984183e-51 | -8.615850e-47 |
Msa0068740 | Msa1335780 | 0.826556 | 2.542074e-54 | -8.615850e-47 |
Msa0075880 | Msa1335780 | -0.827051 | 1.936507e-54 | -8.615850e-47 |
Msa0705330 | Msa1335780 | 0.822753 | 2.001532e-53 | -8.615850e-47 |
Msa0740110 | Msa1335780 | 0.822886 | 1.863045e-53 | -8.615850e-47 |
Msa0147900 | Msa1335780 | 0.800827 | 1.200612e-48 | -8.615850e-47 |
Msa0220740 | Msa1335780 | -0.806411 | 8.333459e-50 | -8.615850e-47 |
Msa0221960 | Msa1335780 | 0.804326 | 2.279713e-49 | -8.615850e-47 |
Msa0223410 | Msa1335780 | 0.829000 | 6.575401e-55 | -8.615850e-47 |
Msa1246140 | Msa1335780 | 0.837190 | 6.017196e-57 | -8.615850e-47 |
Msa1253510 | Msa1335780 | -0.802897 | 4.511708e-49 | -8.615850e-47 |
Msa1310100 | Msa1335780 | 0.809695 | 1.666490e-50 | -8.615850e-47 |
Msa1325860 | Msa1335780 | 0.805537 | 1.272365e-49 | -8.615850e-47 |
Msa1335780 | Msa1362390 | -0.815273 | 1.006057e-51 | -8.615850e-47 |
Msa1335780 | Msa1414750 | 0.994322 | 2.563511e-206 | -8.615850e-47 |
Msa1335780 | Msa1463840 | 0.840423 | 8.773955e-58 | -8.615850e-47 |
Msa0367110 | Msa1335780 | -0.811257 | 7.663206e-51 | -8.615850e-47 |
Msa0450630 | Msa1335780 | -0.807017 | 6.205542e-50 | -8.615850e-47 |
Msa1054810 | Msa1335780 | -0.801131 | 1.040532e-48 | -8.615850e-47 |
Msa0306210 | Msa1335780 | 0.823514 | 1.329879e-53 | -8.615850e-47 |
Msa0498490 | Msa1335780 | -0.803301 | 3.721513e-49 | -8.615850e-47 |
Msa0548280 | Msa1335780 | 0.824172 | 9.320200e-54 | -8.615850e-47 |
Msa0598880 | Msa1335780 | 0.826811 | 2.210396e-54 | -8.615850e-47 |
Msa0881820 | Msa1335780 | 0.828668 | 7.909173e-55 | -8.615850e-47 |
Msa0900770 | Msa1335780 | -0.806246 | 9.029354e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1335780 | MtrunA17_Chr1g0153721 | 95.833 | 240 | 8 | 1 | 1 | 240 | 1 | 238 | 7.64e-172 | 472 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1335780 | AT1G47420.1 | 65.285 | 193 | 67 | 0 | 48 | 240 | 65 | 257 | 2.16e-93 | 275 |
Find 88 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTTTGTTATTCTTCTTTC+TGG | 0.057893 | tig0000674:+77681 | None:intergenic |
TGGTAAATTAATTAATTAAA+AGG | 0.168428 | tig0000674:+77701 | None:intergenic |
CTGTTGCAGGTTACGGTTCT+TGG | 0.177677 | tig0000674:-74499 | Msa1335780:intron |
ACCACCTATTTGAATGCTTT+TGG | 0.218652 | tig0000674:-75745 | Msa1335780:CDS |
CTTGGAACTTCTGGACTTGC+AGG | 0.234009 | tig0000674:-74481 | Msa1335780:CDS |
AGGATTTGTTGGCTGAAAAT+TGG | 0.234472 | tig0000674:-76332 | Msa1335780:CDS |
GTTACGGTTCTTGGAACTTC+TGG | 0.243971 | tig0000674:-74490 | Msa1335780:CDS |
CATTCTTAACACCTTGAAAA+TGG | 0.246950 | tig0000674:-76181 | Msa1335780:CDS |
GCCCAGGCTGTTGAGGAGTT+TGG | 0.326153 | tig0000674:-76207 | Msa1335780:CDS |
AGGTTGTGACCAACGTGTTC+CGG | 0.337909 | tig0000674:-76233 | Msa1335780:CDS |
GGTGGTGGTGGATGCGGTGG+CGG | 0.342219 | tig0000674:+77534 | None:intergenic |
GGTGGTGGATGCGGTGGCGG+CGG | 0.379762 | tig0000674:+77537 | None:intergenic |
GGATGCGGTGGCGGCGGCGA+TGG | 0.392017 | tig0000674:+77543 | None:intergenic |
GGTTGTGACCAACGTGTTCC+GGG | 0.394752 | tig0000674:-76232 | Msa1335780:CDS |
AAAATGAGATGCAGTGGCCT+TGG | 0.418966 | tig0000674:-75658 | Msa1335780:CDS |
AGGCCCAAAAGCATTCAAAT+AGG | 0.424380 | tig0000674:+75741 | None:intergenic |
TGAAAATTGGAGTGAACTTT+CGG | 0.427877 | tig0000674:-76319 | Msa1335780:CDS |
CAACGTGTTCCGGGCTGCCC+AGG | 0.437017 | tig0000674:-76223 | Msa1335780:CDS |
AAGATGAAGACGACGATGAC+GGG | 0.443304 | tig0000674:-77631 | Msa1335780:CDS |
TTCCGCAGATAGTTCTCATC+AGG | 0.443596 | tig0000674:+75721 | None:intergenic |
CACCAAACTCCTCAACAGCC+TGG | 0.455913 | tig0000674:+76205 | None:intergenic |
TCGAAGGGTGGTGGTGGATG+CGG | 0.456198 | tig0000674:+77528 | None:intergenic |
TTGAAAACGCTGTAAAGCTC+AGG | 0.460031 | tig0000674:+76354 | None:intergenic |
GAAAATAATATGTACATGTA+AGG | 0.460667 | tig0000674:-74098 | Msa1335780:three_prime_UTR |
AATCACTTCTCTCCCTCCTC+AGG | 0.463942 | tig0000674:-77481 | Msa1335780:intron |
TGCAGGTCTCCTTTCTCAAA+TGG | 0.464321 | tig0000674:-76435 | Msa1335780:CDS |
TAATCACAAGGAAATAATAG+TGG | 0.471530 | tig0000674:-74314 | Msa1335780:three_prime_UTR |
TGCGGTGGCGGCGGCGATGG+CGG | 0.477763 | tig0000674:+77546 | None:intergenic |
TCACTTGCAAGCACAAATAC+AGG | 0.480289 | tig0000674:-74120 | Msa1335780:three_prime_UTR |
GAAGAAGGTGGAGCAGGAGT+TGG | 0.480618 | tig0000674:-75701 | Msa1335780:CDS |
ATGGAAATTGATGACAGCAT+TGG | 0.480709 | tig0000674:-76162 | Msa1335780:CDS |
CCGGGCTGCCCAGGCTGTTG+AGG | 0.484832 | tig0000674:-76214 | Msa1335780:CDS |
AGAAGAAGAAGAATAAGATC+TGG | 0.486025 | tig0000674:+77570 | None:intergenic |
AAGAAGGTGGAGCAGGAGTT+GGG | 0.489661 | tig0000674:-75700 | Msa1335780:CDS |
CCTCAACAGCCTGGGCAGCC+CGG | 0.493044 | tig0000674:+76214 | None:intergenic |
GGAAAAGCGAATGGAAGAAA+AGG | 0.493818 | tig0000674:+77504 | None:intergenic |
AAAGGTTCGAAGGGTGGTGG+TGG | 0.494406 | tig0000674:+77522 | None:intergenic |
GAAAATGACATTGAAAATGA+TGG | 0.495004 | tig0000674:+74262 | None:intergenic |
CTCCCTATGCCATTTGAGAA+AGG | 0.499228 | tig0000674:+76426 | None:intergenic |
AGAAAAGGTTCGAAGGGTGG+TGG | 0.503842 | tig0000674:+77519 | None:intergenic |
ACCAAACTCCTCAACAGCCT+GGG | 0.509277 | tig0000674:+76206 | None:intergenic |
GAGAAAATCGGTACCTGAGG+AGG | 0.511296 | tig0000674:+77468 | None:intergenic |
TTTCCATAAGCTGAAAATGC+TGG | 0.515646 | tig0000674:-74243 | Msa1335780:three_prime_UTR |
CAGTGGCCTTGGTTCCGAGT+GGG | 0.516709 | tig0000674:-75647 | Msa1335780:CDS |
GGATATGAAAATAACATGTC+AGG | 0.517735 | tig0000674:-74190 | Msa1335780:three_prime_UTR |
CTCCTTTCTCAAATGGCATA+GGG | 0.521545 | tig0000674:-76428 | Msa1335780:CDS |
ACATGCATTGTCTAAAAGTA+CGG | 0.522315 | tig0000674:-76274 | Msa1335780:CDS |
TGAGGAGGGAGAGAAGTGAT+TGG | 0.523679 | tig0000674:+77483 | None:intergenic |
TCTCCTTTCTCAAATGGCAT+AGG | 0.527635 | tig0000674:-76429 | Msa1335780:CDS |
GATGAATGTAGAAACAAATG+AGG | 0.530219 | tig0000674:+74141 | None:intergenic |
AAAATAACATGTCAGGTGGT+TGG | 0.531068 | tig0000674:-74183 | Msa1335780:three_prime_UTR |
TTGTAATGTGTTTAATCACA+AGG | 0.531103 | tig0000674:-74326 | Msa1335780:three_prime_UTR |
GAAGATGAAGACGACGATGA+CGG | 0.532162 | tig0000674:-77632 | Msa1335780:exon |
ATGAATGTAGAAACAAATGA+GGG | 0.532577 | tig0000674:+74142 | None:intergenic |
CCTTGGTTCCGAGTGGGGAA+AGG | 0.533151 | tig0000674:-75641 | Msa1335780:intron |
AAGGGTGGTGGTGGATGCGG+TGG | 0.534788 | tig0000674:+77531 | None:intergenic |
GAAGTGATTGGAAAAGCGAA+TGG | 0.547097 | tig0000674:+77495 | None:intergenic |
CAGGCTGTTGAGGAGTTTGG+TGG | 0.550683 | tig0000674:-76204 | Msa1335780:CDS |
TCTGCGGAAGAAGGTGGAGC+AGG | 0.555544 | tig0000674:-75707 | Msa1335780:CDS |
TTTAGAAACAGTGCATGCAA+TGG | 0.557202 | tig0000674:-74424 | Msa1335780:three_prime_UTR |
TGGAAGAAGAGTTGAGTGAT+CGG | 0.557922 | tig0000674:+77590 | None:intergenic |
GTATGATACCTTTCCCCACT+CGG | 0.558910 | tig0000674:+75633 | None:intergenic |
TGAGAACTATCTGCGGAAGA+AGG | 0.560063 | tig0000674:-75716 | Msa1335780:CDS |
GGAAGAAAAGGTTCGAAGGG+TGG | 0.562521 | tig0000674:+77516 | None:intergenic |
AACAGGAGAAGACGAATCGA+AGG | 0.573392 | tig0000674:+74361 | None:intergenic |
AAAAGTACGGAAGACAAAGC+TGG | 0.589361 | tig0000674:-76261 | Msa1335780:CDS |
GAACTATCTGCGGAAGAAGG+TGG | 0.593130 | tig0000674:-75713 | Msa1335780:CDS |
CCTTTCCCCACTCGGAACCA+AGG | 0.603297 | tig0000674:+75641 | None:intergenic |
AGAAAATCGGTACCTGAGGA+GGG | 0.603357 | tig0000674:+77469 | None:intergenic |
GGAAGACAAAGCTGGTAAAG+AGG | 0.606264 | tig0000674:-76253 | Msa1335780:CDS |
CCCAAAAGCATTCAAATAGG+TGG | 0.606425 | tig0000674:+75744 | None:intergenic |
GAATGGAAGAAAAGGTTCGA+AGG | 0.610270 | tig0000674:+77512 | None:intergenic |
TGAAAACGCTGTAAAGCTCA+GGG | 0.610631 | tig0000674:+76355 | None:intergenic |
AGTGGCCTTGGTTCCGAGTG+GGG | 0.611793 | tig0000674:-75646 | Msa1335780:CDS |
CAGAAAGAAGAATAACAAAG+AGG | 0.613591 | tig0000674:-77680 | Msa1335780:five_prime_UTR |
GCAGTGGCCTTGGTTCCGAG+TGG | 0.620623 | tig0000674:-75648 | Msa1335780:CDS |
GTTGAGTGATCGGAGGAACA+AGG | 0.623875 | tig0000674:+77600 | None:intergenic |
GATGACAGCATTGGATTGAG+TGG | 0.638728 | tig0000674:-76153 | Msa1335780:CDS |
AATGGAAGAAAAGGTTCGAA+GGG | 0.640544 | tig0000674:+77513 | None:intergenic |
TATGAAAATAACATGTCAGG+TGG | 0.642539 | tig0000674:-74187 | Msa1335780:three_prime_UTR |
TAAATGAATGAAATATACCA+TGG | 0.663319 | tig0000674:-74014 | Msa1335780:three_prime_UTR |
ACAGGAGAAGACGAATCGAA+GGG | 0.675377 | tig0000674:+74362 | None:intergenic |
GGCCTGATGAGAACTATCTG+CGG | 0.678017 | tig0000674:-75723 | Msa1335780:CDS |
CTGGGCAGCCCGGAACACGT+TGG | 0.682652 | tig0000674:+76224 | None:intergenic |
ATGCAGATTTCAATGAAACA+TGG | 0.683287 | tig0000674:+74067 | None:intergenic |
AAGAAGAGTTGAGTGATCGG+AGG | 0.693570 | tig0000674:+77593 | None:intergenic |
CAGCATTGGATTGAGTGGCG+AGG | 0.695792 | tig0000674:-76148 | Msa1335780:intron |
TGAATGTAGAAACAAATGAG+GGG | 0.742717 | tig0000674:+74143 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGGTAAATTAATTAATTAAA+AGG | + | tig0000674:74112-74131 | None:intergenic | 10.0% |
!!! | ATTTTGATTTTTCTTATTAA+CGG | - | tig0000674:75248-75267 | Msa1335780:intron | 10.0% |
!! | AATATTAAGATTACTTATTT+CGG | + | tig0000674:75819-75838 | None:intergenic | 10.0% |
!! | TTAATTAGAAAATGTTAAAA+AGG | - | tig0000674:77095-77114 | Msa1335780:intron | 10.0% |
!! | TACAAAAAAAAAAAAAAAAC+AGG | + | tig0000674:77469-77488 | None:intergenic | 10.0% |
!! | TCTAATAAAATTGAGAAAAT+CGG | + | tig0000674:74357-74376 | None:intergenic | 15.0% |
!!! | TTTAATTTGAACTTGAATTT+AGG | + | tig0000674:74449-74468 | None:intergenic | 15.0% |
!!! | AATAATTGTAAAATTGATTC+CGG | - | tig0000674:74570-74589 | Msa1335780:intron | 15.0% |
!! | ATTTGTATGTAAAGTTATAA+TGG | - | tig0000674:75222-75241 | Msa1335780:intron | 15.0% |
!!! | TTTTAAAATGTTATTACCAA+CGG | - | tig0000674:76243-76262 | Msa1335780:CDS | 15.0% |
!! | ACTAAAATATTTATGAATGA+AGG | - | tig0000674:76611-76630 | Msa1335780:intron | 15.0% |
!!! | ATTATTTTTTCAGACATTTT+TGG | - | tig0000674:77046-77065 | Msa1335780:intron | 15.0% |
!! | TAATAATAATCAATCATACT+GGG | + | tig0000674:77192-77211 | None:intergenic | 15.0% |
!! | TTAATAATAATCAATCATAC+TGG | + | tig0000674:77193-77212 | None:intergenic | 15.0% |
!!! | AAATCTAGAATGAATTTTGT+AGG | - | tig0000674:74972-74991 | Msa1335780:intron | 20.0% |
!! | ACGGTAATAATTTAAGAAAA+TGG | + | tig0000674:75105-75124 | None:intergenic | 20.0% |
!!! | TATTTTAGTATTAGTTGAAG+AGG | + | tig0000674:76600-76619 | None:intergenic | 20.0% |
!!! | AAAATTTGAAATTGTCGAAA+CGG | + | tig0000674:76902-76921 | None:intergenic | 20.0% |
!!! | CATTTAACTACATATTTTCA+AGG | + | tig0000674:76956-76975 | None:intergenic | 20.0% |
!! | ATGTCTGAAAAAATAATTCA+AGG | + | tig0000674:77043-77062 | None:intergenic | 20.0% |
!! | GAAAATAATATGTACATGTA+AGG | - | tig0000674:77712-77731 | Msa1335780:five_prime_UTR | 20.0% |
!! | TAAATGAATGAAATATACCA+TGG | - | tig0000674:77796-77815 | Msa1335780:five_prime_UTR | 20.0% |
!!! | GAAATCGATTTTGATATGTT+AGG | + | tig0000674:74822-74841 | None:intergenic | 25.0% |
! | CATAACAAATCATCATACAT+TGG | + | tig0000674:75201-75220 | None:intergenic | 25.0% |
! | CAAATTAGTTCAAAAAACAG+CGG | - | tig0000674:75716-75735 | Msa1335780:CDS | 25.0% |
!! | TTTTTATGTTTAGCAAAACC+TGG | - | tig0000674:75897-75916 | Msa1335780:intron | 25.0% |
!!! | CTGAGTTTTGATTTTTACTT+AGG | - | tig0000674:75983-76002 | Msa1335780:intron | 25.0% |
!! | TCTATTGGTTAAAATTCACA+TGG | - | tig0000674:76462-76481 | Msa1335780:intron | 25.0% |
!! | ATATAAGTCCCACATAATTT+TGG | + | tig0000674:76494-76513 | None:intergenic | 25.0% |
!! | CCTACTGATTAAAATTCAAA+TGG | + | tig0000674:76530-76549 | None:intergenic | 25.0% |
!!! | CCATTTGAATTTTAATCAGT+AGG | - | tig0000674:76527-76546 | Msa1335780:intron | 25.0% |
!!! | TCTTGTTATTTGAACTTAAG+AGG | - | tig0000674:76707-76726 | Msa1335780:intron | 25.0% |
!! | AAATTTGAAATTGTCGAAAC+GGG | + | tig0000674:76901-76920 | None:intergenic | 25.0% |
! | ATTATATATGTCACAATTGC+AGG | - | tig0000674:76976-76995 | Msa1335780:intron | 25.0% |
! | TCTGAAAAAATAATTCAAGG+AGG | + | tig0000674:77040-77059 | None:intergenic | 25.0% |
!!! | TTTTTTCAGACATTTTTGGT+TGG | - | tig0000674:77050-77069 | Msa1335780:intron | 25.0% |
! | TCTAATTAATGACTACACAT+GGG | + | tig0000674:77084-77103 | None:intergenic | 25.0% |
! | TTCTAATTAATGACTACACA+TGG | + | tig0000674:77085-77104 | None:intergenic | 25.0% |
! | AGAATAAAGAAGAAATGCAA+CGG | + | tig0000674:77157-77176 | None:intergenic | 25.0% |
! | TTGTAATGTGTTTAATCACA+AGG | - | tig0000674:77484-77503 | Msa1335780:CDS | 25.0% |
! | TAATCACAAGGAAATAATAG+TGG | - | tig0000674:77496-77515 | Msa1335780:CDS | 25.0% |
! | GAAAATGACATTGAAAATGA+TGG | + | tig0000674:77551-77570 | None:intergenic | 25.0% |
!! | AAGAACTTGTATATTTTCTG+AGG | - | tig0000674:77599-77618 | Msa1335780:CDS | 25.0% |
! | ATGAATGTAGAAACAAATGA+GGG | + | tig0000674:77671-77690 | None:intergenic | 25.0% |
!! | CTCTTTGTTATTCTTCTTTC+TGG | + | tig0000674:74132-74151 | None:intergenic | 30.0% |
CAGAAAGAAGAATAACAAAG+AGG | - | tig0000674:74130-74149 | Msa1335780:three_prime_UTR | 30.0% | |
AGAAGAAGAAGAATAAGATC+TGG | + | tig0000674:74243-74262 | None:intergenic | 30.0% | |
! | GCAGAGATTTTTGAATATGA+AGG | + | tig0000674:74422-74441 | None:intergenic | 30.0% |
TAATTCTGTTGCATTTAGCT+AGG | - | tig0000674:74494-74513 | Msa1335780:intron | 30.0% | |
AGGTTATGTCTATTGTAGTA+TGG | - | tig0000674:74514-74533 | Msa1335780:intron | 30.0% | |
ATAGATTCTAACTTGAAGCT+AGG | + | tig0000674:74766-74785 | None:intergenic | 30.0% | |
! | CTTCAAGTTAGAATCTATTC+CGG | - | tig0000674:74768-74787 | Msa1335780:intron | 30.0% |
ATAAATCACTTGCCTATGTT+TGG | + | tig0000674:74884-74903 | None:intergenic | 30.0% | |
ATAGGCAAGTGATTTATGTT+TGG | - | tig0000674:74887-74906 | Msa1335780:intron | 30.0% | |
GAAATGATTGAGTGTATGTT+TGG | + | tig0000674:75083-75102 | None:intergenic | 30.0% | |
TTATCTATGAAACACAGACA+CGG | + | tig0000674:75124-75143 | None:intergenic | 30.0% | |
TTATCTATGAAACACAGACA+CGG | + | tig0000674:75124-75143 | None:intergenic | 30.0% | |
TACTTACTTTACGTAAAGAG+AGG | - | tig0000674:75278-75297 | Msa1335780:intron | 30.0% | |
AAAAAACATTCACAGAATGC+AGG | - | tig0000674:75358-75377 | Msa1335780:intron | 30.0% | |
TGAAAATTGGAGTGAACTTT+CGG | - | tig0000674:75491-75510 | Msa1335780:intron | 30.0% | |
ACATGCATTGTCTAAAAGTA+CGG | - | tig0000674:75536-75555 | Msa1335780:intron | 30.0% | |
CATTCTTAACACCTTGAAAA+TGG | - | tig0000674:75629-75648 | Msa1335780:intron | 30.0% | |
! | GTCATCAATTTCCATTTTCA+AGG | + | tig0000674:75643-75662 | None:intergenic | 30.0% |
TTTCACACATATATAAGACC+TGG | - | tig0000674:75693-75712 | Msa1335780:CDS | 30.0% | |
!!! | GTTTTTTGAACTAATTTGCC+AGG | + | tig0000674:75714-75733 | None:intergenic | 30.0% |
CATCAGTAAATTGAAATCGT+TGG | - | tig0000674:75751-75770 | Msa1335780:CDS | 30.0% | |
AGTAAATTGAAATCGTTGGA+TGG | - | tig0000674:75755-75774 | Msa1335780:CDS | 30.0% | |
CAATAGTGTCTCTAATGAAT+CGG | + | tig0000674:75924-75943 | None:intergenic | 30.0% | |
!! | AGAGCATTTTGCATATGATT+GGG | + | tig0000674:76023-76042 | None:intergenic | 30.0% |
GTCATGATCTTTCACAATTA+AGG | + | tig0000674:76376-76395 | None:intergenic | 30.0% | |
TGGATCTTACCAAAATTATG+TGG | - | tig0000674:76482-76501 | Msa1335780:intron | 30.0% | |
GGATCTTACCAAAATTATGT+GGG | - | tig0000674:76483-76502 | Msa1335780:intron | 30.0% | |
TGGGACTTATATGATTTACT+GGG | - | tig0000674:76502-76521 | Msa1335780:intron | 30.0% | |
AAGGTAAAATAACTCATGAC+AGG | - | tig0000674:77114-77133 | Msa1335780:intron | 30.0% | |
TTAATTACGTATTTGCCATG+TGG | - | tig0000674:77209-77228 | Msa1335780:intron | 30.0% | |
TAATTACGTATTTGCCATGT+GGG | - | tig0000674:77210-77229 | Msa1335780:intron | 30.0% | |
GGATATGAAAATAACATGTC+AGG | - | tig0000674:77620-77639 | Msa1335780:CDS | 30.0% | |
TATGAAAATAACATGTCAGG+TGG | - | tig0000674:77623-77642 | Msa1335780:CDS | 30.0% | |
TGAATGTAGAAACAAATGAG+GGG | + | tig0000674:77670-77689 | None:intergenic | 30.0% | |
GATGAATGTAGAAACAAATG+AGG | + | tig0000674:77672-77691 | None:intergenic | 30.0% | |
ATGCAGATTTCAATGAAACA+TGG | + | tig0000674:77746-77765 | None:intergenic | 30.0% | |
AATGGAAGAAAAGGTTCGAA+GGG | + | tig0000674:74300-74319 | None:intergenic | 35.0% | |
! | AAATACCGATGAGCTTTTCT+AGG | - | tig0000674:74467-74486 | Msa1335780:CDS | 35.0% |
AATAGCCTAGAAAAGCTCAT+CGG | + | tig0000674:74475-74494 | None:intergenic | 35.0% | |
!! | TACGCCTCTAAAATCAAATG+TGG | - | tig0000674:75040-75059 | Msa1335780:intron | 35.0% |
!! | TGAGCCACATTTGATTTTAG+AGG | + | tig0000674:75047-75066 | None:intergenic | 35.0% |
!! | AGGATTTGTTGGCTGAAAAT+TGG | - | tig0000674:75478-75497 | Msa1335780:intron | 35.0% |
! | ATGGAAATTGATGACAGCAT+TGG | - | tig0000674:75648-75667 | Msa1335780:CDS | 35.0% |
TCATTGGATGAAGATCAAAC+AGG | + | tig0000674:75844-75863 | None:intergenic | 35.0% | |
AGTCAGCATATTGGAATCAT+TGG | + | tig0000674:75860-75879 | None:intergenic | 35.0% | |
TACCATTCACCTATCACATT+TGG | - | tig0000674:75952-75971 | Msa1335780:intron | 35.0% | |
AACCAAATGTGATAGGTGAA+TGG | + | tig0000674:75957-75976 | None:intergenic | 35.0% | |
GATCATCAACCAAATGTGAT+AGG | + | tig0000674:75964-75983 | None:intergenic | 35.0% | |
! | TTTTGCATATGATTGGGCAA+AGG | + | tig0000674:76017-76036 | None:intergenic | 35.0% |
!! | CAGAGCATTTTGCATATGAT+TGG | + | tig0000674:76024-76043 | None:intergenic | 35.0% |
! | ACCACCTATTTGAATGCTTT+TGG | - | tig0000674:76065-76084 | Msa1335780:intron | 35.0% |
! | CCACCTATTTGAATGCTTTT+GGG | - | tig0000674:76066-76085 | Msa1335780:intron | 35.0% |
CACTTAAAAATGAGATGCAG+TGG | - | tig0000674:76146-76165 | Msa1335780:intron | 35.0% | |
ATGTTATTACCAACGGCTTA+TGG | - | tig0000674:76250-76269 | Msa1335780:CDS | 35.0% | |
GCTGAAACATATATTCCAGA+AGG | + | tig0000674:76398-76417 | None:intergenic | 35.0% | |
TTTCAGCTGAGAATTATGCT+AGG | - | tig0000674:76411-76430 | Msa1335780:CDS | 35.0% | |
GTGGGACTTATATGATTTAC+TGG | - | tig0000674:76501-76520 | Msa1335780:intron | 35.0% | |
! | TTGTTGTTGTTGTCGAAACA+GGG | + | tig0000674:76775-76794 | None:intergenic | 35.0% |
TTTGTTGGATCTCTATGACA+TGG | + | tig0000674:76834-76853 | None:intergenic | 35.0% | |
! | GATCCAACAAAGTTTTTCGT+TGG | - | tig0000674:76843-76862 | Msa1335780:intron | 35.0% |
AAATTGTCGAAACGGGTAAA+AGG | + | tig0000674:76894-76913 | None:intergenic | 35.0% | |
TTCTGATCCTTTATCCTATC+TGG | - | tig0000674:77283-77302 | Msa1335780:intron | 35.0% | |
TCTGATCCTTTATCCTATCT+GGG | - | tig0000674:77284-77303 | Msa1335780:intron | 35.0% | |
TTTAGAAACAGTGCATGCAA+TGG | - | tig0000674:77386-77405 | Msa1335780:intron | 35.0% | |
!! | TGGCTTTTAACTATGTCAAC+TGG | - | tig0000674:77516-77535 | Msa1335780:CDS | 35.0% |
!! | GGCTTTTAACTATGTCAACT+GGG | - | tig0000674:77517-77536 | Msa1335780:CDS | 35.0% |
TTTCCATAAGCTGAAAATGC+TGG | - | tig0000674:77567-77586 | Msa1335780:CDS | 35.0% | |
AAAATAACATGTCAGGTGGT+TGG | - | tig0000674:77627-77646 | Msa1335780:CDS | 35.0% | |
TGGAAGAAGAGTTGAGTGAT+CGG | + | tig0000674:74223-74242 | None:intergenic | 40.0% | |
GAATGGAAGAAAAGGTTCGA+AGG | + | tig0000674:74301-74320 | None:intergenic | 40.0% | |
GGAAAAGCGAATGGAAGAAA+AGG | + | tig0000674:74309-74328 | None:intergenic | 40.0% | |
GAAGTGATTGGAAAAGCGAA+TGG | + | tig0000674:74318-74337 | None:intergenic | 40.0% | |
ATTGAGAAAATCGGTACCTG+AGG | + | tig0000674:74348-74367 | None:intergenic | 40.0% | |
CAAGTTAGAATCTATTCCGG+AGG | - | tig0000674:74771-74790 | Msa1335780:intron | 40.0% | |
!! | AGTAGAATCGATTTTGCCTC+CGG | + | tig0000674:74790-74809 | None:intergenic | 40.0% |
! | GCAGCTAGAATTGATTCTAG+AGG | + | tig0000674:74848-74867 | None:intergenic | 40.0% |
! | AATTCTAGCTGCTCTAAACG+TGG | - | tig0000674:74856-74875 | Msa1335780:intron | 40.0% |
CTAAACGTGGAACCAAACAT+AGG | - | tig0000674:74869-74888 | Msa1335780:intron | 40.0% | |
! | TGTATGTTTGGTTCCACTGT+TGG | + | tig0000674:75071-75090 | None:intergenic | 40.0% |
TCTCCTTTCTCAAATGGCAT+AGG | - | tig0000674:75381-75400 | Msa1335780:intron | 40.0% | |
CTCCTTTCTCAAATGGCATA+GGG | - | tig0000674:75382-75401 | Msa1335780:intron | 40.0% | |
TGAAAACGCTGTAAAGCTCA+GGG | + | tig0000674:75458-75477 | None:intergenic | 40.0% | |
TTGAAAACGCTGTAAAGCTC+AGG | + | tig0000674:75459-75478 | None:intergenic | 40.0% | |
! | TGAGCTTTACAGCGTTTTCA+AGG | - | tig0000674:75458-75477 | Msa1335780:intron | 40.0% |
!! | CAGCGTTTTCAAGGATTTGT+TGG | - | tig0000674:75467-75486 | Msa1335780:intron | 40.0% |
! | AAAAGTACGGAAGACAAAGC+TGG | - | tig0000674:75549-75568 | Msa1335780:intron | 40.0% |
ATTTCGGACGCAAATTGATG+AGG | + | tig0000674:75803-75822 | None:intergenic | 40.0% | |
! | TTCCAATATGCTGACTGTAG+TGG | - | tig0000674:75864-75883 | Msa1335780:intron | 40.0% |
!! | CTCTGCGTACCATTTTTGAT+CGG | - | tig0000674:76039-76058 | Msa1335780:intron | 40.0% |
!! | CCCAAAAGCATTCAAATAGG+TGG | + | tig0000674:76069-76088 | None:intergenic | 40.0% |
!! | AGGCCCAAAAGCATTCAAAT+AGG | + | tig0000674:76072-76091 | None:intergenic | 40.0% |
!! | TTTTAGAAACTTGCCCCCAT+TGG | + | tig0000674:76279-76298 | None:intergenic | 40.0% |
!! | GGGGCAAGTTTCTAAAACTA+TGG | - | tig0000674:76282-76301 | Msa1335780:CDS | 40.0% |
TGGAAACATGACAGATAGTC+TGG | - | tig0000674:76302-76321 | Msa1335780:CDS | 40.0% | |
TGTGAAAGATCATGACCTTC+TGG | - | tig0000674:76380-76399 | Msa1335780:CDS | 40.0% | |
TCCAACTCACACTCTTCTAT+TGG | - | tig0000674:76447-76466 | Msa1335780:intron | 40.0% | |
! | ACCAATAGAAGAGTGTGAGT+TGG | + | tig0000674:76451-76470 | None:intergenic | 40.0% |
AGGCTTAGCACTGTAATCAA+TGG | - | tig0000674:76727-76746 | Msa1335780:intron | 40.0% | |
! | TGTTGTTGTTGTCGAAACAG+GGG | + | tig0000674:76774-76793 | None:intergenic | 40.0% |
! | GTTGTTGTTGTTGTCGAAAC+AGG | + | tig0000674:76776-76795 | None:intergenic | 40.0% |
GACAAATATCCCCACTTAGT+GGG | + | tig0000674:76812-76831 | None:intergenic | 40.0% | |
CAGCCAACGAAAAACTTTGT+TGG | + | tig0000674:76849-76868 | None:intergenic | 40.0% | |
TAAAAGGAGAGGGTTGTGTT+AGG | + | tig0000674:76878-76897 | None:intergenic | 40.0% | |
TCAAGGAGGAGTTTGAGAAA+GGG | + | tig0000674:77026-77045 | None:intergenic | 40.0% | |
TTCAAGGAGGAGTTTGAGAA+AGG | + | tig0000674:77027-77046 | None:intergenic | 40.0% | |
TGTAGAACTACTATCCCACA+TGG | + | tig0000674:77227-77246 | None:intergenic | 40.0% | |
CTGATCCTTTATCCTATCTG+GGG | - | tig0000674:77285-77304 | Msa1335780:intron | 40.0% | |
AGAAACCCCAGATAGGATAA+AGG | + | tig0000674:77293-77312 | None:intergenic | 40.0% | |
! | TCACCAGCATTTTCAGCTTA+TGG | + | tig0000674:77573-77592 | None:intergenic | 40.0% |
TCACTTGCAAGCACAAATAC+AGG | - | tig0000674:77690-77709 | Msa1335780:five_prime_UTR | 40.0% | |
GAAGATGAAGACGACGATGA+CGG | - | tig0000674:74178-74197 | Msa1335780:three_prime_UTR | 45.0% | |
AAGATGAAGACGACGATGAC+GGG | - | tig0000674:74179-74198 | Msa1335780:three_prime_UTR | 45.0% | |
AAGAAGAGTTGAGTGATCGG+AGG | + | tig0000674:74220-74239 | None:intergenic | 45.0% | |
AGAAAATCGGTACCTGAGGA+GGG | + | tig0000674:74344-74363 | None:intergenic | 45.0% | |
!! | CTCTTCGACTCACTTTTAGC+CGG | + | tig0000674:74592-74611 | None:intergenic | 45.0% |
GCTAAAAGTGAGTCGAAGAG+TGG | - | tig0000674:74592-74611 | Msa1335780:intron | 45.0% | |
AAATGTGGCTCATCCAACAG+TGG | - | tig0000674:75055-75074 | Msa1335780:intron | 45.0% | |
TGCAGGTCTCCTTTCTCAAA+TGG | - | tig0000674:75375-75394 | Msa1335780:intron | 45.0% | |
! | CTCCCTATGCCATTTGAGAA+AGG | + | tig0000674:75387-75406 | None:intergenic | 45.0% |
! | AGCTCAGGGTCTTTTATGTC+AGG | + | tig0000674:75444-75463 | None:intergenic | 45.0% |
GGAAGACAAAGCTGGTAAAG+AGG | - | tig0000674:75557-75576 | Msa1335780:intron | 45.0% | |
! | GATGACAGCATTGGATTGAG+TGG | - | tig0000674:75657-75676 | Msa1335780:CDS | 45.0% |
AGCCACTACAGTCAGCATAT+TGG | + | tig0000674:75869-75888 | None:intergenic | 45.0% | |
TGTCTCTAATGAATCGGACC+AGG | + | tig0000674:75918-75937 | None:intergenic | 45.0% | |
! | GGTGGTGTACCGATCAAAAA+TGG | + | tig0000674:76051-76070 | None:intergenic | 45.0% |
TTCCGCAGATAGTTCTCATC+AGG | + | tig0000674:76092-76111 | None:intergenic | 45.0% | |
TGAGAACTATCTGCGGAAGA+AGG | - | tig0000674:76094-76113 | Msa1335780:intron | 45.0% | |
AAAATGAGATGCAGTGGCCT+TGG | - | tig0000674:76152-76171 | Msa1335780:CDS | 45.0% | |
GTATGATACCTTTCCCCACT+CGG | + | tig0000674:76180-76199 | None:intergenic | 45.0% | |
!! | GTTGCTTTCAAGTTGAAGCG+CGG | - | tig0000674:76324-76343 | Msa1335780:CDS | 45.0% |
! | ATCAGTAGGAGAGAGCGTAT+TGG | - | tig0000674:76541-76560 | Msa1335780:intron | 45.0% |
AGGGGTTCAAATAACGAGAG+TGG | + | tig0000674:76756-76775 | None:intergenic | 45.0% | |
! | CAAGCCTTATCCCACTAAGT+GGG | - | tig0000674:76799-76818 | Msa1335780:intron | 45.0% |
! | AAGCCTTATCCCACTAAGTG+GGG | - | tig0000674:76800-76819 | Msa1335780:intron | 45.0% |
TATCCCCACTTAGTGGGATA+AGG | + | tig0000674:76806-76825 | None:intergenic | 45.0% | |
GGACAAATATCCCCACTTAG+TGG | + | tig0000674:76813-76832 | None:intergenic | 45.0% | |
!! | AAGTTTTTCGTTGGCTGTCG+AGG | - | tig0000674:76852-76871 | Msa1335780:intron | 45.0% |
TCGAAACGGGTAAAAGGAGA+GGG | + | tig0000674:76888-76907 | None:intergenic | 45.0% | |
GTTACGGTTCTTGGAACTTC+TGG | - | tig0000674:77320-77339 | Msa1335780:intron | 45.0% | |
ACAGGAGAAGACGAATCGAA+GGG | + | tig0000674:77451-77470 | None:intergenic | 45.0% | |
AACAGGAGAAGACGAATCGA+AGG | + | tig0000674:77452-77471 | None:intergenic | 45.0% | |
GTTGAGTGATCGGAGGAACA+AGG | + | tig0000674:74213-74232 | None:intergenic | 50.0% | |
AGAAAAGGTTCGAAGGGTGG+TGG | + | tig0000674:74294-74313 | None:intergenic | 50.0% | |
GGAAGAAAAGGTTCGAAGGG+TGG | + | tig0000674:74297-74316 | None:intergenic | 50.0% | |
TGAGGAGGGAGAGAAGTGAT+TGG | + | tig0000674:74330-74349 | None:intergenic | 50.0% | |
AATCACTTCTCTCCCTCCTC+AGG | - | tig0000674:74329-74348 | Msa1335780:three_prime_UTR | 50.0% | |
GAGAAAATCGGTACCTGAGG+AGG | + | tig0000674:74345-74364 | None:intergenic | 50.0% | |
AGGTTGTGACCAACGTGTTC+CGG | - | tig0000674:75577-75596 | Msa1335780:intron | 50.0% | |
ACCAAACTCCTCAACAGCCT+GGG | + | tig0000674:75607-75626 | None:intergenic | 50.0% | |
GGCCTGATGAGAACTATCTG+CGG | - | tig0000674:76087-76106 | Msa1335780:intron | 50.0% | |
GAACTATCTGCGGAAGAAGG+TGG | - | tig0000674:76097-76116 | Msa1335780:intron | 50.0% | |
AAGAAGGTGGAGCAGGAGTT+GGG | - | tig0000674:76110-76129 | Msa1335780:intron | 50.0% | |
AACGGCTTATGGCTGCCAAT+GGG | - | tig0000674:76261-76280 | Msa1335780:CDS | 50.0% | |
CCACTTAGTGGGATAAGGCT+TGG | + | tig0000674:76801-76820 | None:intergenic | 50.0% | |
! | CCAAGCCTTATCCCACTAAG+TGG | - | tig0000674:76798-76817 | Msa1335780:intron | 50.0% |
GTCGAAACGGGTAAAAGGAG+AGG | + | tig0000674:76889-76908 | None:intergenic | 50.0% | |
CTGCAACAGAAACCCCAGAT+AGG | + | tig0000674:77300-77319 | None:intergenic | 50.0% | |
! | CTATCTGGGGTTTCTGTTGC+AGG | - | tig0000674:77298-77317 | Msa1335780:intron | 50.0% |
GGGGTTTCTGTTGCAGGTTA+CGG | - | tig0000674:77304-77323 | Msa1335780:intron | 50.0% | |
CTGTTGCAGGTTACGGTTCT+TGG | - | tig0000674:77311-77330 | Msa1335780:intron | 50.0% | |
CTTGGAACTTCTGGACTTGC+AGG | - | tig0000674:77329-77348 | Msa1335780:intron | 50.0% | |
! | AAAGGTTCGAAGGGTGGTGG+TGG | + | tig0000674:74291-74310 | None:intergenic | 55.0% |
GGTTGTGACCAACGTGTTCC+GGG | - | tig0000674:75578-75597 | Msa1335780:intron | 55.0% | |
CACCAAACTCCTCAACAGCC+TGG | + | tig0000674:75608-75627 | None:intergenic | 55.0% | |
CAGGCTGTTGAGGAGTTTGG+TGG | - | tig0000674:75606-75625 | Msa1335780:intron | 55.0% | |
! | CAGCATTGGATTGAGTGGCG+AGG | - | tig0000674:75662-75681 | Msa1335780:CDS | 55.0% |
GAAGAAGGTGGAGCAGGAGT+TGG | - | tig0000674:76109-76128 | Msa1335780:intron | 55.0% | |
CATTGGCAGCCATAAGCCGT+TGG | + | tig0000674:76262-76281 | None:intergenic | 55.0% | |
CAACGGCTTATGGCTGCCAA+TGG | - | tig0000674:76260-76279 | Msa1335780:CDS | 55.0% | |
ACGGCTTATGGCTGCCAATG+GGG | - | tig0000674:76262-76281 | Msa1335780:CDS | 55.0% | |
!! | TCGAAGGGTGGTGGTGGATG+CGG | + | tig0000674:74285-74304 | None:intergenic | 60.0% |
GCCCAGGCTGTTGAGGAGTT+TGG | - | tig0000674:75603-75622 | Msa1335780:intron | 60.0% | |
TCTGCGGAAGAAGGTGGAGC+AGG | - | tig0000674:76103-76122 | Msa1335780:intron | 60.0% | |
! | CAGTGGCCTTGGTTCCGAGT+GGG | - | tig0000674:76163-76182 | Msa1335780:CDS | 60.0% |
! | AGTGGCCTTGGTTCCGAGTG+GGG | - | tig0000674:76164-76183 | Msa1335780:CDS | 60.0% |
CCTTTCCCCACTCGGAACCA+AGG | + | tig0000674:76172-76191 | None:intergenic | 60.0% | |
CCTTGGTTCCGAGTGGGGAA+AGG | - | tig0000674:76169-76188 | Msa1335780:CDS | 60.0% | |
CGGCTTATGGCTGCCAATGG+GGG | - | tig0000674:76263-76282 | Msa1335780:CDS | 60.0% | |
!! | AAGGGTGGTGGTGGATGCGG+TGG | + | tig0000674:74282-74301 | None:intergenic | 65.0% |
! | GCAGTGGCCTTGGTTCCGAG+TGG | - | tig0000674:76162-76181 | Msa1335780:CDS | 65.0% |
!! | GGTGGTGGTGGATGCGGTGG+CGG | + | tig0000674:74279-74298 | None:intergenic | 70.0% |
CTGGGCAGCCCGGAACACGT+TGG | + | tig0000674:75589-75608 | None:intergenic | 70.0% | |
CAACGTGTTCCGGGCTGCCC+AGG | - | tig0000674:75587-75606 | Msa1335780:intron | 70.0% | |
CCTCAACAGCCTGGGCAGCC+CGG | + | tig0000674:75599-75618 | None:intergenic | 70.0% | |
!! | GGTGGTGGATGCGGTGGCGG+CGG | + | tig0000674:74276-74295 | None:intergenic | 75.0% |
CCGGGCTGCCCAGGCTGTTG+AGG | - | tig0000674:75596-75615 | Msa1335780:intron | 75.0% | |
!! | TGCGGTGGCGGCGGCGATGG+CGG | + | tig0000674:74267-74286 | None:intergenic | 80.0% |
!! | GGATGCGGTGGCGGCGGCGA+TGG | + | tig0000674:74270-74289 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0000674 | gene | 74008 | 77824 | 74008 | ID=Msa1335780;Name=Msa1335780 |
tig0000674 | mRNA | 74008 | 77824 | 74008 | ID=Msa1335780-mRNA-1;Parent=Msa1335780;Name=Msa1335780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=174|1|1|1|1|1|4|448|240 |
tig0000674 | exon | 74008 | 74512 | 74008 | ID=Msa1335780-mRNA-1:exon:385;Parent=Msa1335780-mRNA-1 |
tig0000674 | exon | 75642 | 75827 | 75642 | ID=Msa1335780-mRNA-1:exon:384;Parent=Msa1335780-mRNA-1 |
tig0000674 | exon | 76149 | 76459 | 76149 | ID=Msa1335780-mRNA-1:exon:383;Parent=Msa1335780-mRNA-1 |
tig0000674 | exon | 77482 | 77824 | 77482 | ID=Msa1335780-mRNA-1:exon:382;Parent=Msa1335780-mRNA-1 |
tig0000674 | five_prime_UTR | 77651 | 77824 | 77651 | ID=Msa1335780-mRNA-1:five_prime_utr;Parent=Msa1335780-mRNA-1 |
tig0000674 | CDS | 77482 | 77650 | 77482 | ID=Msa1335780-mRNA-1:cds;Parent=Msa1335780-mRNA-1 |
tig0000674 | CDS | 76149 | 76459 | 76149 | ID=Msa1335780-mRNA-1:cds;Parent=Msa1335780-mRNA-1 |
tig0000674 | CDS | 75642 | 75827 | 75642 | ID=Msa1335780-mRNA-1:cds;Parent=Msa1335780-mRNA-1 |
tig0000674 | CDS | 74456 | 74512 | 74456 | ID=Msa1335780-mRNA-1:cds;Parent=Msa1335780-mRNA-1 |
tig0000674 | three_prime_UTR | 74008 | 74455 | 74008 | ID=Msa1335780-mRNA-1:three_prime_utr;Parent=Msa1335780-mRNA-1 |
Gene Sequence |
Protein sequence |