AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1335780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335780 MtrunA17_Chr1g0153721 95.833 240 8 1 1 240 1 238 7.64e-172 472
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1335780 AT1G47420.1 65.285 193 67 0 48 240 65 257 2.16e-93 275

Find 88 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTGTTATTCTTCTTTC+TGG 0.057893 tig0000674:+77681 None:intergenic
TGGTAAATTAATTAATTAAA+AGG 0.168428 tig0000674:+77701 None:intergenic
CTGTTGCAGGTTACGGTTCT+TGG 0.177677 tig0000674:-74499 Msa1335780:intron
ACCACCTATTTGAATGCTTT+TGG 0.218652 tig0000674:-75745 Msa1335780:CDS
CTTGGAACTTCTGGACTTGC+AGG 0.234009 tig0000674:-74481 Msa1335780:CDS
AGGATTTGTTGGCTGAAAAT+TGG 0.234472 tig0000674:-76332 Msa1335780:CDS
GTTACGGTTCTTGGAACTTC+TGG 0.243971 tig0000674:-74490 Msa1335780:CDS
CATTCTTAACACCTTGAAAA+TGG 0.246950 tig0000674:-76181 Msa1335780:CDS
GCCCAGGCTGTTGAGGAGTT+TGG 0.326153 tig0000674:-76207 Msa1335780:CDS
AGGTTGTGACCAACGTGTTC+CGG 0.337909 tig0000674:-76233 Msa1335780:CDS
GGTGGTGGTGGATGCGGTGG+CGG 0.342219 tig0000674:+77534 None:intergenic
GGTGGTGGATGCGGTGGCGG+CGG 0.379762 tig0000674:+77537 None:intergenic
GGATGCGGTGGCGGCGGCGA+TGG 0.392017 tig0000674:+77543 None:intergenic
GGTTGTGACCAACGTGTTCC+GGG 0.394752 tig0000674:-76232 Msa1335780:CDS
AAAATGAGATGCAGTGGCCT+TGG 0.418966 tig0000674:-75658 Msa1335780:CDS
AGGCCCAAAAGCATTCAAAT+AGG 0.424380 tig0000674:+75741 None:intergenic
TGAAAATTGGAGTGAACTTT+CGG 0.427877 tig0000674:-76319 Msa1335780:CDS
CAACGTGTTCCGGGCTGCCC+AGG 0.437017 tig0000674:-76223 Msa1335780:CDS
AAGATGAAGACGACGATGAC+GGG 0.443304 tig0000674:-77631 Msa1335780:CDS
TTCCGCAGATAGTTCTCATC+AGG 0.443596 tig0000674:+75721 None:intergenic
CACCAAACTCCTCAACAGCC+TGG 0.455913 tig0000674:+76205 None:intergenic
TCGAAGGGTGGTGGTGGATG+CGG 0.456198 tig0000674:+77528 None:intergenic
TTGAAAACGCTGTAAAGCTC+AGG 0.460031 tig0000674:+76354 None:intergenic
GAAAATAATATGTACATGTA+AGG 0.460667 tig0000674:-74098 Msa1335780:three_prime_UTR
AATCACTTCTCTCCCTCCTC+AGG 0.463942 tig0000674:-77481 Msa1335780:intron
TGCAGGTCTCCTTTCTCAAA+TGG 0.464321 tig0000674:-76435 Msa1335780:CDS
TAATCACAAGGAAATAATAG+TGG 0.471530 tig0000674:-74314 Msa1335780:three_prime_UTR
TGCGGTGGCGGCGGCGATGG+CGG 0.477763 tig0000674:+77546 None:intergenic
TCACTTGCAAGCACAAATAC+AGG 0.480289 tig0000674:-74120 Msa1335780:three_prime_UTR
GAAGAAGGTGGAGCAGGAGT+TGG 0.480618 tig0000674:-75701 Msa1335780:CDS
ATGGAAATTGATGACAGCAT+TGG 0.480709 tig0000674:-76162 Msa1335780:CDS
CCGGGCTGCCCAGGCTGTTG+AGG 0.484832 tig0000674:-76214 Msa1335780:CDS
AGAAGAAGAAGAATAAGATC+TGG 0.486025 tig0000674:+77570 None:intergenic
AAGAAGGTGGAGCAGGAGTT+GGG 0.489661 tig0000674:-75700 Msa1335780:CDS
CCTCAACAGCCTGGGCAGCC+CGG 0.493044 tig0000674:+76214 None:intergenic
GGAAAAGCGAATGGAAGAAA+AGG 0.493818 tig0000674:+77504 None:intergenic
AAAGGTTCGAAGGGTGGTGG+TGG 0.494406 tig0000674:+77522 None:intergenic
GAAAATGACATTGAAAATGA+TGG 0.495004 tig0000674:+74262 None:intergenic
CTCCCTATGCCATTTGAGAA+AGG 0.499228 tig0000674:+76426 None:intergenic
AGAAAAGGTTCGAAGGGTGG+TGG 0.503842 tig0000674:+77519 None:intergenic
ACCAAACTCCTCAACAGCCT+GGG 0.509277 tig0000674:+76206 None:intergenic
GAGAAAATCGGTACCTGAGG+AGG 0.511296 tig0000674:+77468 None:intergenic
TTTCCATAAGCTGAAAATGC+TGG 0.515646 tig0000674:-74243 Msa1335780:three_prime_UTR
CAGTGGCCTTGGTTCCGAGT+GGG 0.516709 tig0000674:-75647 Msa1335780:CDS
GGATATGAAAATAACATGTC+AGG 0.517735 tig0000674:-74190 Msa1335780:three_prime_UTR
CTCCTTTCTCAAATGGCATA+GGG 0.521545 tig0000674:-76428 Msa1335780:CDS
ACATGCATTGTCTAAAAGTA+CGG 0.522315 tig0000674:-76274 Msa1335780:CDS
TGAGGAGGGAGAGAAGTGAT+TGG 0.523679 tig0000674:+77483 None:intergenic
TCTCCTTTCTCAAATGGCAT+AGG 0.527635 tig0000674:-76429 Msa1335780:CDS
GATGAATGTAGAAACAAATG+AGG 0.530219 tig0000674:+74141 None:intergenic
AAAATAACATGTCAGGTGGT+TGG 0.531068 tig0000674:-74183 Msa1335780:three_prime_UTR
TTGTAATGTGTTTAATCACA+AGG 0.531103 tig0000674:-74326 Msa1335780:three_prime_UTR
GAAGATGAAGACGACGATGA+CGG 0.532162 tig0000674:-77632 Msa1335780:exon
ATGAATGTAGAAACAAATGA+GGG 0.532577 tig0000674:+74142 None:intergenic
CCTTGGTTCCGAGTGGGGAA+AGG 0.533151 tig0000674:-75641 Msa1335780:intron
AAGGGTGGTGGTGGATGCGG+TGG 0.534788 tig0000674:+77531 None:intergenic
GAAGTGATTGGAAAAGCGAA+TGG 0.547097 tig0000674:+77495 None:intergenic
CAGGCTGTTGAGGAGTTTGG+TGG 0.550683 tig0000674:-76204 Msa1335780:CDS
TCTGCGGAAGAAGGTGGAGC+AGG 0.555544 tig0000674:-75707 Msa1335780:CDS
TTTAGAAACAGTGCATGCAA+TGG 0.557202 tig0000674:-74424 Msa1335780:three_prime_UTR
TGGAAGAAGAGTTGAGTGAT+CGG 0.557922 tig0000674:+77590 None:intergenic
GTATGATACCTTTCCCCACT+CGG 0.558910 tig0000674:+75633 None:intergenic
TGAGAACTATCTGCGGAAGA+AGG 0.560063 tig0000674:-75716 Msa1335780:CDS
GGAAGAAAAGGTTCGAAGGG+TGG 0.562521 tig0000674:+77516 None:intergenic
AACAGGAGAAGACGAATCGA+AGG 0.573392 tig0000674:+74361 None:intergenic
AAAAGTACGGAAGACAAAGC+TGG 0.589361 tig0000674:-76261 Msa1335780:CDS
GAACTATCTGCGGAAGAAGG+TGG 0.593130 tig0000674:-75713 Msa1335780:CDS
CCTTTCCCCACTCGGAACCA+AGG 0.603297 tig0000674:+75641 None:intergenic
AGAAAATCGGTACCTGAGGA+GGG 0.603357 tig0000674:+77469 None:intergenic
GGAAGACAAAGCTGGTAAAG+AGG 0.606264 tig0000674:-76253 Msa1335780:CDS
CCCAAAAGCATTCAAATAGG+TGG 0.606425 tig0000674:+75744 None:intergenic
GAATGGAAGAAAAGGTTCGA+AGG 0.610270 tig0000674:+77512 None:intergenic
TGAAAACGCTGTAAAGCTCA+GGG 0.610631 tig0000674:+76355 None:intergenic
AGTGGCCTTGGTTCCGAGTG+GGG 0.611793 tig0000674:-75646 Msa1335780:CDS
CAGAAAGAAGAATAACAAAG+AGG 0.613591 tig0000674:-77680 Msa1335780:five_prime_UTR
GCAGTGGCCTTGGTTCCGAG+TGG 0.620623 tig0000674:-75648 Msa1335780:CDS
GTTGAGTGATCGGAGGAACA+AGG 0.623875 tig0000674:+77600 None:intergenic
GATGACAGCATTGGATTGAG+TGG 0.638728 tig0000674:-76153 Msa1335780:CDS
AATGGAAGAAAAGGTTCGAA+GGG 0.640544 tig0000674:+77513 None:intergenic
TATGAAAATAACATGTCAGG+TGG 0.642539 tig0000674:-74187 Msa1335780:three_prime_UTR
TAAATGAATGAAATATACCA+TGG 0.663319 tig0000674:-74014 Msa1335780:three_prime_UTR
ACAGGAGAAGACGAATCGAA+GGG 0.675377 tig0000674:+74362 None:intergenic
GGCCTGATGAGAACTATCTG+CGG 0.678017 tig0000674:-75723 Msa1335780:CDS
CTGGGCAGCCCGGAACACGT+TGG 0.682652 tig0000674:+76224 None:intergenic
ATGCAGATTTCAATGAAACA+TGG 0.683287 tig0000674:+74067 None:intergenic
AAGAAGAGTTGAGTGATCGG+AGG 0.693570 tig0000674:+77593 None:intergenic
CAGCATTGGATTGAGTGGCG+AGG 0.695792 tig0000674:-76148 Msa1335780:intron
TGAATGTAGAAACAAATGAG+GGG 0.742717 tig0000674:+74143 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGGTAAATTAATTAATTAAA+AGG + tig0000674:74112-74131 None:intergenic 10.0%
!!! ATTTTGATTTTTCTTATTAA+CGG - tig0000674:75248-75267 Msa1335780:intron 10.0%
!! AATATTAAGATTACTTATTT+CGG + tig0000674:75819-75838 None:intergenic 10.0%
!! TTAATTAGAAAATGTTAAAA+AGG - tig0000674:77095-77114 Msa1335780:intron 10.0%
!! TACAAAAAAAAAAAAAAAAC+AGG + tig0000674:77469-77488 None:intergenic 10.0%
!! TCTAATAAAATTGAGAAAAT+CGG + tig0000674:74357-74376 None:intergenic 15.0%
!!! TTTAATTTGAACTTGAATTT+AGG + tig0000674:74449-74468 None:intergenic 15.0%
!!! AATAATTGTAAAATTGATTC+CGG - tig0000674:74570-74589 Msa1335780:intron 15.0%
!! ATTTGTATGTAAAGTTATAA+TGG - tig0000674:75222-75241 Msa1335780:intron 15.0%
!!! TTTTAAAATGTTATTACCAA+CGG - tig0000674:76243-76262 Msa1335780:CDS 15.0%
!! ACTAAAATATTTATGAATGA+AGG - tig0000674:76611-76630 Msa1335780:intron 15.0%
!!! ATTATTTTTTCAGACATTTT+TGG - tig0000674:77046-77065 Msa1335780:intron 15.0%
!! TAATAATAATCAATCATACT+GGG + tig0000674:77192-77211 None:intergenic 15.0%
!! TTAATAATAATCAATCATAC+TGG + tig0000674:77193-77212 None:intergenic 15.0%
!!! AAATCTAGAATGAATTTTGT+AGG - tig0000674:74972-74991 Msa1335780:intron 20.0%
!! ACGGTAATAATTTAAGAAAA+TGG + tig0000674:75105-75124 None:intergenic 20.0%
!!! TATTTTAGTATTAGTTGAAG+AGG + tig0000674:76600-76619 None:intergenic 20.0%
!!! AAAATTTGAAATTGTCGAAA+CGG + tig0000674:76902-76921 None:intergenic 20.0%
!!! CATTTAACTACATATTTTCA+AGG + tig0000674:76956-76975 None:intergenic 20.0%
!! ATGTCTGAAAAAATAATTCA+AGG + tig0000674:77043-77062 None:intergenic 20.0%
!! GAAAATAATATGTACATGTA+AGG - tig0000674:77712-77731 Msa1335780:five_prime_UTR 20.0%
!! TAAATGAATGAAATATACCA+TGG - tig0000674:77796-77815 Msa1335780:five_prime_UTR 20.0%
!!! GAAATCGATTTTGATATGTT+AGG + tig0000674:74822-74841 None:intergenic 25.0%
! CATAACAAATCATCATACAT+TGG + tig0000674:75201-75220 None:intergenic 25.0%
! CAAATTAGTTCAAAAAACAG+CGG - tig0000674:75716-75735 Msa1335780:CDS 25.0%
!! TTTTTATGTTTAGCAAAACC+TGG - tig0000674:75897-75916 Msa1335780:intron 25.0%
!!! CTGAGTTTTGATTTTTACTT+AGG - tig0000674:75983-76002 Msa1335780:intron 25.0%
!! TCTATTGGTTAAAATTCACA+TGG - tig0000674:76462-76481 Msa1335780:intron 25.0%
!! ATATAAGTCCCACATAATTT+TGG + tig0000674:76494-76513 None:intergenic 25.0%
!! CCTACTGATTAAAATTCAAA+TGG + tig0000674:76530-76549 None:intergenic 25.0%
!!! CCATTTGAATTTTAATCAGT+AGG - tig0000674:76527-76546 Msa1335780:intron 25.0%
!!! TCTTGTTATTTGAACTTAAG+AGG - tig0000674:76707-76726 Msa1335780:intron 25.0%
!! AAATTTGAAATTGTCGAAAC+GGG + tig0000674:76901-76920 None:intergenic 25.0%
! ATTATATATGTCACAATTGC+AGG - tig0000674:76976-76995 Msa1335780:intron 25.0%
! TCTGAAAAAATAATTCAAGG+AGG + tig0000674:77040-77059 None:intergenic 25.0%
!!! TTTTTTCAGACATTTTTGGT+TGG - tig0000674:77050-77069 Msa1335780:intron 25.0%
! TCTAATTAATGACTACACAT+GGG + tig0000674:77084-77103 None:intergenic 25.0%
! TTCTAATTAATGACTACACA+TGG + tig0000674:77085-77104 None:intergenic 25.0%
! AGAATAAAGAAGAAATGCAA+CGG + tig0000674:77157-77176 None:intergenic 25.0%
! TTGTAATGTGTTTAATCACA+AGG - tig0000674:77484-77503 Msa1335780:CDS 25.0%
! TAATCACAAGGAAATAATAG+TGG - tig0000674:77496-77515 Msa1335780:CDS 25.0%
! GAAAATGACATTGAAAATGA+TGG + tig0000674:77551-77570 None:intergenic 25.0%
!! AAGAACTTGTATATTTTCTG+AGG - tig0000674:77599-77618 Msa1335780:CDS 25.0%
! ATGAATGTAGAAACAAATGA+GGG + tig0000674:77671-77690 None:intergenic 25.0%
!! CTCTTTGTTATTCTTCTTTC+TGG + tig0000674:74132-74151 None:intergenic 30.0%
CAGAAAGAAGAATAACAAAG+AGG - tig0000674:74130-74149 Msa1335780:three_prime_UTR 30.0%
AGAAGAAGAAGAATAAGATC+TGG + tig0000674:74243-74262 None:intergenic 30.0%
! GCAGAGATTTTTGAATATGA+AGG + tig0000674:74422-74441 None:intergenic 30.0%
TAATTCTGTTGCATTTAGCT+AGG - tig0000674:74494-74513 Msa1335780:intron 30.0%
AGGTTATGTCTATTGTAGTA+TGG - tig0000674:74514-74533 Msa1335780:intron 30.0%
ATAGATTCTAACTTGAAGCT+AGG + tig0000674:74766-74785 None:intergenic 30.0%
! CTTCAAGTTAGAATCTATTC+CGG - tig0000674:74768-74787 Msa1335780:intron 30.0%
ATAAATCACTTGCCTATGTT+TGG + tig0000674:74884-74903 None:intergenic 30.0%
ATAGGCAAGTGATTTATGTT+TGG - tig0000674:74887-74906 Msa1335780:intron 30.0%
GAAATGATTGAGTGTATGTT+TGG + tig0000674:75083-75102 None:intergenic 30.0%
TTATCTATGAAACACAGACA+CGG + tig0000674:75124-75143 None:intergenic 30.0%
TTATCTATGAAACACAGACA+CGG + tig0000674:75124-75143 None:intergenic 30.0%
TACTTACTTTACGTAAAGAG+AGG - tig0000674:75278-75297 Msa1335780:intron 30.0%
AAAAAACATTCACAGAATGC+AGG - tig0000674:75358-75377 Msa1335780:intron 30.0%
TGAAAATTGGAGTGAACTTT+CGG - tig0000674:75491-75510 Msa1335780:intron 30.0%
ACATGCATTGTCTAAAAGTA+CGG - tig0000674:75536-75555 Msa1335780:intron 30.0%
CATTCTTAACACCTTGAAAA+TGG - tig0000674:75629-75648 Msa1335780:intron 30.0%
! GTCATCAATTTCCATTTTCA+AGG + tig0000674:75643-75662 None:intergenic 30.0%
TTTCACACATATATAAGACC+TGG - tig0000674:75693-75712 Msa1335780:CDS 30.0%
!!! GTTTTTTGAACTAATTTGCC+AGG + tig0000674:75714-75733 None:intergenic 30.0%
CATCAGTAAATTGAAATCGT+TGG - tig0000674:75751-75770 Msa1335780:CDS 30.0%
AGTAAATTGAAATCGTTGGA+TGG - tig0000674:75755-75774 Msa1335780:CDS 30.0%
CAATAGTGTCTCTAATGAAT+CGG + tig0000674:75924-75943 None:intergenic 30.0%
!! AGAGCATTTTGCATATGATT+GGG + tig0000674:76023-76042 None:intergenic 30.0%
GTCATGATCTTTCACAATTA+AGG + tig0000674:76376-76395 None:intergenic 30.0%
TGGATCTTACCAAAATTATG+TGG - tig0000674:76482-76501 Msa1335780:intron 30.0%
GGATCTTACCAAAATTATGT+GGG - tig0000674:76483-76502 Msa1335780:intron 30.0%
TGGGACTTATATGATTTACT+GGG - tig0000674:76502-76521 Msa1335780:intron 30.0%
AAGGTAAAATAACTCATGAC+AGG - tig0000674:77114-77133 Msa1335780:intron 30.0%
TTAATTACGTATTTGCCATG+TGG - tig0000674:77209-77228 Msa1335780:intron 30.0%
TAATTACGTATTTGCCATGT+GGG - tig0000674:77210-77229 Msa1335780:intron 30.0%
GGATATGAAAATAACATGTC+AGG - tig0000674:77620-77639 Msa1335780:CDS 30.0%
TATGAAAATAACATGTCAGG+TGG - tig0000674:77623-77642 Msa1335780:CDS 30.0%
TGAATGTAGAAACAAATGAG+GGG + tig0000674:77670-77689 None:intergenic 30.0%
GATGAATGTAGAAACAAATG+AGG + tig0000674:77672-77691 None:intergenic 30.0%
ATGCAGATTTCAATGAAACA+TGG + tig0000674:77746-77765 None:intergenic 30.0%
AATGGAAGAAAAGGTTCGAA+GGG + tig0000674:74300-74319 None:intergenic 35.0%
! AAATACCGATGAGCTTTTCT+AGG - tig0000674:74467-74486 Msa1335780:CDS 35.0%
AATAGCCTAGAAAAGCTCAT+CGG + tig0000674:74475-74494 None:intergenic 35.0%
!! TACGCCTCTAAAATCAAATG+TGG - tig0000674:75040-75059 Msa1335780:intron 35.0%
!! TGAGCCACATTTGATTTTAG+AGG + tig0000674:75047-75066 None:intergenic 35.0%
!! AGGATTTGTTGGCTGAAAAT+TGG - tig0000674:75478-75497 Msa1335780:intron 35.0%
! ATGGAAATTGATGACAGCAT+TGG - tig0000674:75648-75667 Msa1335780:CDS 35.0%
TCATTGGATGAAGATCAAAC+AGG + tig0000674:75844-75863 None:intergenic 35.0%
AGTCAGCATATTGGAATCAT+TGG + tig0000674:75860-75879 None:intergenic 35.0%
TACCATTCACCTATCACATT+TGG - tig0000674:75952-75971 Msa1335780:intron 35.0%
AACCAAATGTGATAGGTGAA+TGG + tig0000674:75957-75976 None:intergenic 35.0%
GATCATCAACCAAATGTGAT+AGG + tig0000674:75964-75983 None:intergenic 35.0%
! TTTTGCATATGATTGGGCAA+AGG + tig0000674:76017-76036 None:intergenic 35.0%
!! CAGAGCATTTTGCATATGAT+TGG + tig0000674:76024-76043 None:intergenic 35.0%
! ACCACCTATTTGAATGCTTT+TGG - tig0000674:76065-76084 Msa1335780:intron 35.0%
! CCACCTATTTGAATGCTTTT+GGG - tig0000674:76066-76085 Msa1335780:intron 35.0%
CACTTAAAAATGAGATGCAG+TGG - tig0000674:76146-76165 Msa1335780:intron 35.0%
ATGTTATTACCAACGGCTTA+TGG - tig0000674:76250-76269 Msa1335780:CDS 35.0%
GCTGAAACATATATTCCAGA+AGG + tig0000674:76398-76417 None:intergenic 35.0%
TTTCAGCTGAGAATTATGCT+AGG - tig0000674:76411-76430 Msa1335780:CDS 35.0%
GTGGGACTTATATGATTTAC+TGG - tig0000674:76501-76520 Msa1335780:intron 35.0%
! TTGTTGTTGTTGTCGAAACA+GGG + tig0000674:76775-76794 None:intergenic 35.0%
TTTGTTGGATCTCTATGACA+TGG + tig0000674:76834-76853 None:intergenic 35.0%
! GATCCAACAAAGTTTTTCGT+TGG - tig0000674:76843-76862 Msa1335780:intron 35.0%
AAATTGTCGAAACGGGTAAA+AGG + tig0000674:76894-76913 None:intergenic 35.0%
TTCTGATCCTTTATCCTATC+TGG - tig0000674:77283-77302 Msa1335780:intron 35.0%
TCTGATCCTTTATCCTATCT+GGG - tig0000674:77284-77303 Msa1335780:intron 35.0%
TTTAGAAACAGTGCATGCAA+TGG - tig0000674:77386-77405 Msa1335780:intron 35.0%
!! TGGCTTTTAACTATGTCAAC+TGG - tig0000674:77516-77535 Msa1335780:CDS 35.0%
!! GGCTTTTAACTATGTCAACT+GGG - tig0000674:77517-77536 Msa1335780:CDS 35.0%
TTTCCATAAGCTGAAAATGC+TGG - tig0000674:77567-77586 Msa1335780:CDS 35.0%
AAAATAACATGTCAGGTGGT+TGG - tig0000674:77627-77646 Msa1335780:CDS 35.0%
TGGAAGAAGAGTTGAGTGAT+CGG + tig0000674:74223-74242 None:intergenic 40.0%
GAATGGAAGAAAAGGTTCGA+AGG + tig0000674:74301-74320 None:intergenic 40.0%
GGAAAAGCGAATGGAAGAAA+AGG + tig0000674:74309-74328 None:intergenic 40.0%
GAAGTGATTGGAAAAGCGAA+TGG + tig0000674:74318-74337 None:intergenic 40.0%
ATTGAGAAAATCGGTACCTG+AGG + tig0000674:74348-74367 None:intergenic 40.0%
CAAGTTAGAATCTATTCCGG+AGG - tig0000674:74771-74790 Msa1335780:intron 40.0%
!! AGTAGAATCGATTTTGCCTC+CGG + tig0000674:74790-74809 None:intergenic 40.0%
! GCAGCTAGAATTGATTCTAG+AGG + tig0000674:74848-74867 None:intergenic 40.0%
! AATTCTAGCTGCTCTAAACG+TGG - tig0000674:74856-74875 Msa1335780:intron 40.0%
CTAAACGTGGAACCAAACAT+AGG - tig0000674:74869-74888 Msa1335780:intron 40.0%
! TGTATGTTTGGTTCCACTGT+TGG + tig0000674:75071-75090 None:intergenic 40.0%
TCTCCTTTCTCAAATGGCAT+AGG - tig0000674:75381-75400 Msa1335780:intron 40.0%
CTCCTTTCTCAAATGGCATA+GGG - tig0000674:75382-75401 Msa1335780:intron 40.0%
TGAAAACGCTGTAAAGCTCA+GGG + tig0000674:75458-75477 None:intergenic 40.0%
TTGAAAACGCTGTAAAGCTC+AGG + tig0000674:75459-75478 None:intergenic 40.0%
! TGAGCTTTACAGCGTTTTCA+AGG - tig0000674:75458-75477 Msa1335780:intron 40.0%
!! CAGCGTTTTCAAGGATTTGT+TGG - tig0000674:75467-75486 Msa1335780:intron 40.0%
! AAAAGTACGGAAGACAAAGC+TGG - tig0000674:75549-75568 Msa1335780:intron 40.0%
ATTTCGGACGCAAATTGATG+AGG + tig0000674:75803-75822 None:intergenic 40.0%
! TTCCAATATGCTGACTGTAG+TGG - tig0000674:75864-75883 Msa1335780:intron 40.0%
!! CTCTGCGTACCATTTTTGAT+CGG - tig0000674:76039-76058 Msa1335780:intron 40.0%
!! CCCAAAAGCATTCAAATAGG+TGG + tig0000674:76069-76088 None:intergenic 40.0%
!! AGGCCCAAAAGCATTCAAAT+AGG + tig0000674:76072-76091 None:intergenic 40.0%
!! TTTTAGAAACTTGCCCCCAT+TGG + tig0000674:76279-76298 None:intergenic 40.0%
!! GGGGCAAGTTTCTAAAACTA+TGG - tig0000674:76282-76301 Msa1335780:CDS 40.0%
TGGAAACATGACAGATAGTC+TGG - tig0000674:76302-76321 Msa1335780:CDS 40.0%
TGTGAAAGATCATGACCTTC+TGG - tig0000674:76380-76399 Msa1335780:CDS 40.0%
TCCAACTCACACTCTTCTAT+TGG - tig0000674:76447-76466 Msa1335780:intron 40.0%
! ACCAATAGAAGAGTGTGAGT+TGG + tig0000674:76451-76470 None:intergenic 40.0%
AGGCTTAGCACTGTAATCAA+TGG - tig0000674:76727-76746 Msa1335780:intron 40.0%
! TGTTGTTGTTGTCGAAACAG+GGG + tig0000674:76774-76793 None:intergenic 40.0%
! GTTGTTGTTGTTGTCGAAAC+AGG + tig0000674:76776-76795 None:intergenic 40.0%
GACAAATATCCCCACTTAGT+GGG + tig0000674:76812-76831 None:intergenic 40.0%
CAGCCAACGAAAAACTTTGT+TGG + tig0000674:76849-76868 None:intergenic 40.0%
TAAAAGGAGAGGGTTGTGTT+AGG + tig0000674:76878-76897 None:intergenic 40.0%
TCAAGGAGGAGTTTGAGAAA+GGG + tig0000674:77026-77045 None:intergenic 40.0%
TTCAAGGAGGAGTTTGAGAA+AGG + tig0000674:77027-77046 None:intergenic 40.0%
TGTAGAACTACTATCCCACA+TGG + tig0000674:77227-77246 None:intergenic 40.0%
CTGATCCTTTATCCTATCTG+GGG - tig0000674:77285-77304 Msa1335780:intron 40.0%
AGAAACCCCAGATAGGATAA+AGG + tig0000674:77293-77312 None:intergenic 40.0%
! TCACCAGCATTTTCAGCTTA+TGG + tig0000674:77573-77592 None:intergenic 40.0%
TCACTTGCAAGCACAAATAC+AGG - tig0000674:77690-77709 Msa1335780:five_prime_UTR 40.0%
GAAGATGAAGACGACGATGA+CGG - tig0000674:74178-74197 Msa1335780:three_prime_UTR 45.0%
AAGATGAAGACGACGATGAC+GGG - tig0000674:74179-74198 Msa1335780:three_prime_UTR 45.0%
AAGAAGAGTTGAGTGATCGG+AGG + tig0000674:74220-74239 None:intergenic 45.0%
AGAAAATCGGTACCTGAGGA+GGG + tig0000674:74344-74363 None:intergenic 45.0%
!! CTCTTCGACTCACTTTTAGC+CGG + tig0000674:74592-74611 None:intergenic 45.0%
GCTAAAAGTGAGTCGAAGAG+TGG - tig0000674:74592-74611 Msa1335780:intron 45.0%
AAATGTGGCTCATCCAACAG+TGG - tig0000674:75055-75074 Msa1335780:intron 45.0%
TGCAGGTCTCCTTTCTCAAA+TGG - tig0000674:75375-75394 Msa1335780:intron 45.0%
! CTCCCTATGCCATTTGAGAA+AGG + tig0000674:75387-75406 None:intergenic 45.0%
! AGCTCAGGGTCTTTTATGTC+AGG + tig0000674:75444-75463 None:intergenic 45.0%
GGAAGACAAAGCTGGTAAAG+AGG - tig0000674:75557-75576 Msa1335780:intron 45.0%
! GATGACAGCATTGGATTGAG+TGG - tig0000674:75657-75676 Msa1335780:CDS 45.0%
AGCCACTACAGTCAGCATAT+TGG + tig0000674:75869-75888 None:intergenic 45.0%
TGTCTCTAATGAATCGGACC+AGG + tig0000674:75918-75937 None:intergenic 45.0%
! GGTGGTGTACCGATCAAAAA+TGG + tig0000674:76051-76070 None:intergenic 45.0%
TTCCGCAGATAGTTCTCATC+AGG + tig0000674:76092-76111 None:intergenic 45.0%
TGAGAACTATCTGCGGAAGA+AGG - tig0000674:76094-76113 Msa1335780:intron 45.0%
AAAATGAGATGCAGTGGCCT+TGG - tig0000674:76152-76171 Msa1335780:CDS 45.0%
GTATGATACCTTTCCCCACT+CGG + tig0000674:76180-76199 None:intergenic 45.0%
!! GTTGCTTTCAAGTTGAAGCG+CGG - tig0000674:76324-76343 Msa1335780:CDS 45.0%
! ATCAGTAGGAGAGAGCGTAT+TGG - tig0000674:76541-76560 Msa1335780:intron 45.0%
AGGGGTTCAAATAACGAGAG+TGG + tig0000674:76756-76775 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - tig0000674:76799-76818 Msa1335780:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0000674:76800-76819 Msa1335780:intron 45.0%
TATCCCCACTTAGTGGGATA+AGG + tig0000674:76806-76825 None:intergenic 45.0%
GGACAAATATCCCCACTTAG+TGG + tig0000674:76813-76832 None:intergenic 45.0%
!! AAGTTTTTCGTTGGCTGTCG+AGG - tig0000674:76852-76871 Msa1335780:intron 45.0%
TCGAAACGGGTAAAAGGAGA+GGG + tig0000674:76888-76907 None:intergenic 45.0%
GTTACGGTTCTTGGAACTTC+TGG - tig0000674:77320-77339 Msa1335780:intron 45.0%
ACAGGAGAAGACGAATCGAA+GGG + tig0000674:77451-77470 None:intergenic 45.0%
AACAGGAGAAGACGAATCGA+AGG + tig0000674:77452-77471 None:intergenic 45.0%
GTTGAGTGATCGGAGGAACA+AGG + tig0000674:74213-74232 None:intergenic 50.0%
AGAAAAGGTTCGAAGGGTGG+TGG + tig0000674:74294-74313 None:intergenic 50.0%
GGAAGAAAAGGTTCGAAGGG+TGG + tig0000674:74297-74316 None:intergenic 50.0%
TGAGGAGGGAGAGAAGTGAT+TGG + tig0000674:74330-74349 None:intergenic 50.0%
AATCACTTCTCTCCCTCCTC+AGG - tig0000674:74329-74348 Msa1335780:three_prime_UTR 50.0%
GAGAAAATCGGTACCTGAGG+AGG + tig0000674:74345-74364 None:intergenic 50.0%
AGGTTGTGACCAACGTGTTC+CGG - tig0000674:75577-75596 Msa1335780:intron 50.0%
ACCAAACTCCTCAACAGCCT+GGG + tig0000674:75607-75626 None:intergenic 50.0%
GGCCTGATGAGAACTATCTG+CGG - tig0000674:76087-76106 Msa1335780:intron 50.0%
GAACTATCTGCGGAAGAAGG+TGG - tig0000674:76097-76116 Msa1335780:intron 50.0%
AAGAAGGTGGAGCAGGAGTT+GGG - tig0000674:76110-76129 Msa1335780:intron 50.0%
AACGGCTTATGGCTGCCAAT+GGG - tig0000674:76261-76280 Msa1335780:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG + tig0000674:76801-76820 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - tig0000674:76798-76817 Msa1335780:intron 50.0%
GTCGAAACGGGTAAAAGGAG+AGG + tig0000674:76889-76908 None:intergenic 50.0%
CTGCAACAGAAACCCCAGAT+AGG + tig0000674:77300-77319 None:intergenic 50.0%
! CTATCTGGGGTTTCTGTTGC+AGG - tig0000674:77298-77317 Msa1335780:intron 50.0%
GGGGTTTCTGTTGCAGGTTA+CGG - tig0000674:77304-77323 Msa1335780:intron 50.0%
CTGTTGCAGGTTACGGTTCT+TGG - tig0000674:77311-77330 Msa1335780:intron 50.0%
CTTGGAACTTCTGGACTTGC+AGG - tig0000674:77329-77348 Msa1335780:intron 50.0%
! AAAGGTTCGAAGGGTGGTGG+TGG + tig0000674:74291-74310 None:intergenic 55.0%
GGTTGTGACCAACGTGTTCC+GGG - tig0000674:75578-75597 Msa1335780:intron 55.0%
CACCAAACTCCTCAACAGCC+TGG + tig0000674:75608-75627 None:intergenic 55.0%
CAGGCTGTTGAGGAGTTTGG+TGG - tig0000674:75606-75625 Msa1335780:intron 55.0%
! CAGCATTGGATTGAGTGGCG+AGG - tig0000674:75662-75681 Msa1335780:CDS 55.0%
GAAGAAGGTGGAGCAGGAGT+TGG - tig0000674:76109-76128 Msa1335780:intron 55.0%
CATTGGCAGCCATAAGCCGT+TGG + tig0000674:76262-76281 None:intergenic 55.0%
CAACGGCTTATGGCTGCCAA+TGG - tig0000674:76260-76279 Msa1335780:CDS 55.0%
ACGGCTTATGGCTGCCAATG+GGG - tig0000674:76262-76281 Msa1335780:CDS 55.0%
!! TCGAAGGGTGGTGGTGGATG+CGG + tig0000674:74285-74304 None:intergenic 60.0%
GCCCAGGCTGTTGAGGAGTT+TGG - tig0000674:75603-75622 Msa1335780:intron 60.0%
TCTGCGGAAGAAGGTGGAGC+AGG - tig0000674:76103-76122 Msa1335780:intron 60.0%
! CAGTGGCCTTGGTTCCGAGT+GGG - tig0000674:76163-76182 Msa1335780:CDS 60.0%
! AGTGGCCTTGGTTCCGAGTG+GGG - tig0000674:76164-76183 Msa1335780:CDS 60.0%
CCTTTCCCCACTCGGAACCA+AGG + tig0000674:76172-76191 None:intergenic 60.0%
CCTTGGTTCCGAGTGGGGAA+AGG - tig0000674:76169-76188 Msa1335780:CDS 60.0%
CGGCTTATGGCTGCCAATGG+GGG - tig0000674:76263-76282 Msa1335780:CDS 60.0%
!! AAGGGTGGTGGTGGATGCGG+TGG + tig0000674:74282-74301 None:intergenic 65.0%
! GCAGTGGCCTTGGTTCCGAG+TGG - tig0000674:76162-76181 Msa1335780:CDS 65.0%
!! GGTGGTGGTGGATGCGGTGG+CGG + tig0000674:74279-74298 None:intergenic 70.0%
CTGGGCAGCCCGGAACACGT+TGG + tig0000674:75589-75608 None:intergenic 70.0%
CAACGTGTTCCGGGCTGCCC+AGG - tig0000674:75587-75606 Msa1335780:intron 70.0%
CCTCAACAGCCTGGGCAGCC+CGG + tig0000674:75599-75618 None:intergenic 70.0%
!! GGTGGTGGATGCGGTGGCGG+CGG + tig0000674:74276-74295 None:intergenic 75.0%
CCGGGCTGCCCAGGCTGTTG+AGG - tig0000674:75596-75615 Msa1335780:intron 75.0%
!! TGCGGTGGCGGCGGCGATGG+CGG + tig0000674:74267-74286 None:intergenic 80.0%
!! GGATGCGGTGGCGGCGGCGA+TGG + tig0000674:74270-74289 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0000674 gene 74008 77824 74008 ID=Msa1335780;Name=Msa1335780
tig0000674 mRNA 74008 77824 74008 ID=Msa1335780-mRNA-1;Parent=Msa1335780;Name=Msa1335780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=174|1|1|1|1|1|4|448|240
tig0000674 exon 74008 74512 74008 ID=Msa1335780-mRNA-1:exon:385;Parent=Msa1335780-mRNA-1
tig0000674 exon 75642 75827 75642 ID=Msa1335780-mRNA-1:exon:384;Parent=Msa1335780-mRNA-1
tig0000674 exon 76149 76459 76149 ID=Msa1335780-mRNA-1:exon:383;Parent=Msa1335780-mRNA-1
tig0000674 exon 77482 77824 77482 ID=Msa1335780-mRNA-1:exon:382;Parent=Msa1335780-mRNA-1
tig0000674 five_prime_UTR 77651 77824 77651 ID=Msa1335780-mRNA-1:five_prime_utr;Parent=Msa1335780-mRNA-1
tig0000674 CDS 77482 77650 77482 ID=Msa1335780-mRNA-1:cds;Parent=Msa1335780-mRNA-1
tig0000674 CDS 76149 76459 76149 ID=Msa1335780-mRNA-1:cds;Parent=Msa1335780-mRNA-1
tig0000674 CDS 75642 75827 75642 ID=Msa1335780-mRNA-1:cds;Parent=Msa1335780-mRNA-1
tig0000674 CDS 74456 74512 74456 ID=Msa1335780-mRNA-1:cds;Parent=Msa1335780-mRNA-1
tig0000674 three_prime_UTR 74008 74455 74008 ID=Msa1335780-mRNA-1:three_prime_utr;Parent=Msa1335780-mRNA-1
Gene Sequence

>Msa1335780

ATGAAGACGACGATGACGGGATTGAGATCCTTGTTCCTCCGATCACTCAACTCTTCTTCCAGATCTTATTCTTCTTCTTCTGCCGCCATCGCCGCCGCCACCGCATCCACCACCACCCTTCGAACCTTTTCTTCCATTCGCTTTTCCAATCACTTCTCTCCCTCCTCAGAATGCAGGTCTCCTTTCTCAAATGGCATAGGGAGCATGCGATTTTATAGTGAAGAAGTGACTCACATGCCTGACATAAAAGACCCTGAGCTTTACAGCGTTTTCAAGGATTTGTTGGCTGAAAATTGGAGTGAACTTTCGGATGCTGTCGTTTCTGATGCTAAACATGCATTGTCTAAAAGTACGGAAGACAAAGCTGGTAAAGAGGTTGTGACCAACGTGTTCCGGGCTGCCCAGGCTGTTGAGGAGTTTGGTGGCATTCTTAACACCTTGAAAATGGAAATTGATGACAGCATTGGATTGAGTGGCGAGGATGTAAAACCTTTGCCCAATCATATGCAAAATGCTCTGCGTACCATTTTTGATCGGTACACCACCTATTTGAATGCTTTTGGGCCTGATGAGAACTATCTGCGGAAGAAGGTGGAGCAGGAGTTGGGTACAAAGATGATACACTTAAAAATGAGATGCAGTGGCCTTGGTTCCGAGTGGGGAAAGGTTACGGTTCTTGGAACTTCTGGACTTGCAGGTTCATATGTCGAGCAAAGAGCATAG

Protein sequence

>Msa1335780

MKTTMTGLRSLFLRSLNSSSRSYSSSSAAIAAATASTTTLRTFSSIRFSNHFSPSSECRSPFSNGIGSMRFYSEEVTHMPDIKDPELYSVFKDLLAENWSELSDAVVSDAKHALSKSTEDKAGKEVVTNVFRAAQAVEEFGGILNTLKMEIDDSIGLSGEDVKPLPNHMQNALRTIFDRYTTYLNAFGPDENYLRKKVEQELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLAGSYVEQRA*