Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1414750 | sp|Q9SX77|SDH5_ARATH | 65.285 | 193 | 67 | 0 | 48 | 240 | 65 | 257 | 2.12e-92 | 275 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1414750 | G7I4F8 | 95.833 | 240 | 8 | 1 | 1 | 240 | 1 | 238 | 3.97e-168 | 472 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0068740 | Msa1414750 | 0.801851 | 7.408669e-49 | -8.615850e-47 |
Msa0075880 | Msa1414750 | -0.805072 | 1.592286e-49 | -8.615850e-47 |
Msa1362390 | Msa1414750 | -0.800487 | 1.408266e-48 | -8.615850e-47 |
Msa1414750 | Msa1463840 | 0.836103 | 1.138409e-56 | -8.615850e-47 |
Msa0705330 | Msa1414750 | 0.803083 | 4.129648e-49 | -8.615850e-47 |
Msa0740110 | Msa1414750 | 0.819985 | 8.712618e-53 | -8.615850e-47 |
Msa0223410 | Msa1414750 | 0.817118 | 3.892125e-52 | -8.615850e-47 |
Msa1246140 | Msa1414750 | 0.842663 | 2.253008e-58 | -8.615850e-47 |
Msa1253510 | Msa1414750 | -0.807567 | 4.745119e-50 | -8.615850e-47 |
Msa1335780 | Msa1414750 | 0.994322 | 2.563511e-206 | -8.615850e-47 |
Msa0367110 | Msa1414750 | -0.816383 | 5.687608e-52 | -8.615850e-47 |
Msa0450630 | Msa1414750 | -0.808162 | 3.545827e-50 | -8.615850e-47 |
Msa1101660 | Msa1414750 | -0.800809 | 1.210962e-48 | -8.615850e-47 |
Msa0306210 | Msa1414750 | 0.804571 | 2.026215e-49 | -8.615850e-47 |
Msa0498490 | Msa1414750 | -0.802257 | 6.113284e-49 | -8.615850e-47 |
Msa0548280 | Msa1414750 | 0.811263 | 7.641565e-51 | -8.615850e-47 |
Msa0598880 | Msa1414750 | 0.819851 | 9.347148e-53 | -8.615850e-47 |
Msa0881820 | Msa1414750 | 0.818614 | 1.788433e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1414750 | MtrunA17_Chr1g0153721 | 95.833 | 240 | 8 | 1 | 1 | 240 | 1 | 238 | 7.64e-172 | 472 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1414750 | AT1G47420.1 | 65.285 | 193 | 67 | 0 | 48 | 240 | 65 | 257 | 2.16e-93 | 275 |
Find 88 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTCTTTGTTATTCTTCTTTC+TGG | 0.057893 | tig0024141:+52651 | None:intergenic |
TGGTAAATTAATTAATTAAA+AGG | 0.168428 | tig0024141:+52671 | None:intergenic |
CTGTTGCAGGTTACGGTTCT+TGG | 0.177677 | tig0024141:-49461 | Msa1414750:intron |
ACCACCTATTTGAATGCTTT+TGG | 0.218652 | tig0024141:-50703 | Msa1414750:CDS |
CTTGGAACTTCTGGACTTGC+AGG | 0.234009 | tig0024141:-49443 | Msa1414750:CDS |
AGGATTTGTTGGCTGAAAAT+TGG | 0.234472 | tig0024141:-51292 | Msa1414750:CDS |
GTTACGGTTCTTGGAACTTC+TGG | 0.243971 | tig0024141:-49452 | Msa1414750:CDS |
CATTCTTAACACCTTGAAAA+TGG | 0.246950 | tig0024141:-51141 | Msa1414750:CDS |
GCCCAGGCTGTTGAGGAGTT+TGG | 0.326153 | tig0024141:-51167 | Msa1414750:CDS |
AGGTTGTGACCAACGTGTTC+CGG | 0.337909 | tig0024141:-51193 | Msa1414750:CDS |
GGTGGTGGTGGATGCGGTGG+CGG | 0.342219 | tig0024141:+52504 | None:intergenic |
GGTGGTGGATGCGGTGGCGG+CGG | 0.379762 | tig0024141:+52507 | None:intergenic |
GGATGCGGTGGCGGCGGCGA+TGG | 0.392017 | tig0024141:+52513 | None:intergenic |
GGTTGTGACCAACGTGTTCC+GGG | 0.394752 | tig0024141:-51192 | Msa1414750:CDS |
AAAATGAGATGCAGTGGCCT+TGG | 0.418966 | tig0024141:-50616 | Msa1414750:CDS |
AGGCCCAAAAGCATTCAAAT+AGG | 0.424380 | tig0024141:+50699 | None:intergenic |
TGAAAATTGGAGTGAACTTT+CGG | 0.427877 | tig0024141:-51279 | Msa1414750:CDS |
CAACGTGTTCCGGGCTGCCC+AGG | 0.437017 | tig0024141:-51183 | Msa1414750:CDS |
AAGATGAAGACGACGATGAC+GGG | 0.443304 | tig0024141:-52601 | Msa1414750:CDS |
TTCCGCAGATAGTTCTCATC+AGG | 0.443596 | tig0024141:+50679 | None:intergenic |
CACCAAACTCCTCAACAGCC+TGG | 0.455913 | tig0024141:+51165 | None:intergenic |
TCGAAGGGTGGTGGTGGATG+CGG | 0.456198 | tig0024141:+52498 | None:intergenic |
TTGAAAACGCTGTAAAGCTC+AGG | 0.460031 | tig0024141:+51314 | None:intergenic |
GAAAATAATATGTACATGTA+AGG | 0.460667 | tig0024141:-49064 | Msa1414750:three_prime_UTR |
AATCACTTCTCTCCCTCCTC+AGG | 0.463942 | tig0024141:-52451 | Msa1414750:intron |
TGCAGGTCTCCTTTCTCAAA+TGG | 0.464321 | tig0024141:-51395 | Msa1414750:CDS |
TAATCACAAGGAAATAATAG+TGG | 0.471530 | tig0024141:-49280 | Msa1414750:three_prime_UTR |
TGCGGTGGCGGCGGCGATGG+CGG | 0.477763 | tig0024141:+52516 | None:intergenic |
TCACTTGCAAGCACAAATAC+AGG | 0.480289 | tig0024141:-49086 | Msa1414750:three_prime_UTR |
GAAGAAGGTGGAGCAGGAGT+TGG | 0.480618 | tig0024141:-50659 | Msa1414750:CDS |
ATGGAAATTGATGACAGCAT+TGG | 0.480709 | tig0024141:-51122 | Msa1414750:CDS |
CCGGGCTGCCCAGGCTGTTG+AGG | 0.484832 | tig0024141:-51174 | Msa1414750:CDS |
AGAAGAAGAAGAATAAGATC+TGG | 0.486025 | tig0024141:+52540 | None:intergenic |
AAGAAGGTGGAGCAGGAGTT+GGG | 0.489661 | tig0024141:-50658 | Msa1414750:CDS |
CCTCAACAGCCTGGGCAGCC+CGG | 0.493044 | tig0024141:+51174 | None:intergenic |
GGAAAAGCGAATGGAAGAAA+AGG | 0.493818 | tig0024141:+52474 | None:intergenic |
AAAGGTTCGAAGGGTGGTGG+TGG | 0.494406 | tig0024141:+52492 | None:intergenic |
GAAAATGACATTGAAAATGA+TGG | 0.495004 | tig0024141:+49228 | None:intergenic |
CTCCCTATGCCATTTGAGAA+AGG | 0.499228 | tig0024141:+51386 | None:intergenic |
AGAAAAGGTTCGAAGGGTGG+TGG | 0.503842 | tig0024141:+52489 | None:intergenic |
ACCAAACTCCTCAACAGCCT+GGG | 0.509277 | tig0024141:+51166 | None:intergenic |
GAGAAAATCGGTACCTGAGG+AGG | 0.511296 | tig0024141:+52438 | None:intergenic |
TTTCCATAAGCTGAAAATGC+TGG | 0.515646 | tig0024141:-49209 | Msa1414750:three_prime_UTR |
CAGTGGCCTTGGTTCCGAGT+GGG | 0.516709 | tig0024141:-50605 | Msa1414750:CDS |
GGATATGAAAATAACATGTC+AGG | 0.517735 | tig0024141:-49156 | Msa1414750:three_prime_UTR |
CTCCTTTCTCAAATGGCATA+GGG | 0.521545 | tig0024141:-51388 | Msa1414750:CDS |
ACATGCATTGTCTAAAAGTA+CGG | 0.522315 | tig0024141:-51234 | Msa1414750:CDS |
TGAGGAGGGAGAGAAGTGAT+TGG | 0.523679 | tig0024141:+52453 | None:intergenic |
TCTCCTTTCTCAAATGGCAT+AGG | 0.527635 | tig0024141:-51389 | Msa1414750:CDS |
GATGAATGTAGAAACAAATG+AGG | 0.530219 | tig0024141:+49107 | None:intergenic |
AAAATAACATGTCAGGTGGT+TGG | 0.531068 | tig0024141:-49149 | Msa1414750:three_prime_UTR |
TTGTAATGTGTTTAATCACA+AGG | 0.531103 | tig0024141:-49292 | Msa1414750:three_prime_UTR |
GAAGATGAAGACGACGATGA+CGG | 0.532162 | tig0024141:-52602 | Msa1414750:exon |
ATGAATGTAGAAACAAATGA+GGG | 0.532577 | tig0024141:+49108 | None:intergenic |
CCTTGGTTCCGAGTGGGGAA+AGG | 0.533151 | tig0024141:-50599 | Msa1414750:intron |
AAGGGTGGTGGTGGATGCGG+TGG | 0.534788 | tig0024141:+52501 | None:intergenic |
GAAGTGATTGGAAAAGCGAA+TGG | 0.547097 | tig0024141:+52465 | None:intergenic |
CAGGCTGTTGAGGAGTTTGG+TGG | 0.550683 | tig0024141:-51164 | Msa1414750:CDS |
TCTGCGGAAGAAGGTGGAGC+AGG | 0.555544 | tig0024141:-50665 | Msa1414750:CDS |
TTTAGAAACAGTGCATGCAA+TGG | 0.557202 | tig0024141:-49386 | Msa1414750:three_prime_UTR |
TGGAAGAAGAGTTGAGTGAT+CGG | 0.557922 | tig0024141:+52560 | None:intergenic |
GTATGATACCTTTCCCCACT+CGG | 0.558910 | tig0024141:+50591 | None:intergenic |
TGAGAACTATCTGCGGAAGA+AGG | 0.560063 | tig0024141:-50674 | Msa1414750:CDS |
GGAAGAAAAGGTTCGAAGGG+TGG | 0.562521 | tig0024141:+52486 | None:intergenic |
AACAGGAGAAGACGAATCGA+AGG | 0.573392 | tig0024141:+49323 | None:intergenic |
AAAAGTACGGAAGACAAAGC+TGG | 0.589361 | tig0024141:-51221 | Msa1414750:CDS |
GAACTATCTGCGGAAGAAGG+TGG | 0.593130 | tig0024141:-50671 | Msa1414750:CDS |
CCTTTCCCCACTCGGAACCA+AGG | 0.603297 | tig0024141:+50599 | None:intergenic |
AGAAAATCGGTACCTGAGGA+GGG | 0.603357 | tig0024141:+52439 | None:intergenic |
GGAAGACAAAGCTGGTAAAG+AGG | 0.606264 | tig0024141:-51213 | Msa1414750:CDS |
CCCAAAAGCATTCAAATAGG+TGG | 0.606425 | tig0024141:+50702 | None:intergenic |
GAATGGAAGAAAAGGTTCGA+AGG | 0.610270 | tig0024141:+52482 | None:intergenic |
TGAAAACGCTGTAAAGCTCA+GGG | 0.610631 | tig0024141:+51315 | None:intergenic |
AGTGGCCTTGGTTCCGAGTG+GGG | 0.611793 | tig0024141:-50604 | Msa1414750:CDS |
CAGAAAGAAGAATAACAAAG+AGG | 0.613591 | tig0024141:-52650 | Msa1414750:five_prime_UTR |
GCAGTGGCCTTGGTTCCGAG+TGG | 0.620623 | tig0024141:-50606 | Msa1414750:CDS |
GTTGAGTGATCGGAGGAACA+AGG | 0.623875 | tig0024141:+52570 | None:intergenic |
GATGACAGCATTGGATTGAG+TGG | 0.638728 | tig0024141:-51113 | Msa1414750:CDS |
AATGGAAGAAAAGGTTCGAA+GGG | 0.640544 | tig0024141:+52483 | None:intergenic |
TATGAAAATAACATGTCAGG+TGG | 0.642539 | tig0024141:-49153 | Msa1414750:three_prime_UTR |
TAAATGAATGAAATTTACCA+TGG | 0.642987 | tig0024141:-48980 | Msa1414750:three_prime_UTR |
ACAGGAGAAGACGAATCGAA+GGG | 0.675377 | tig0024141:+49324 | None:intergenic |
GGCCTGATGAGAACTATCTG+CGG | 0.678017 | tig0024141:-50681 | Msa1414750:CDS |
CTGGGCAGCCCGGAACACGT+TGG | 0.682652 | tig0024141:+51184 | None:intergenic |
ATGCAGATTTCAATGAAACA+TGG | 0.683287 | tig0024141:+49033 | None:intergenic |
AAGAAGAGTTGAGTGATCGG+AGG | 0.693570 | tig0024141:+52563 | None:intergenic |
CAGCATTGGATTGAGTGGCG+AGG | 0.695792 | tig0024141:-51108 | Msa1414750:intron |
TGAATGTAGAAACAAATGAG+GGG | 0.742717 | tig0024141:+49109 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TGGTAAATTAATTAATTAAA+AGG | + | tig0024141:49078-49097 | None:intergenic | 10.0% |
!!! | ATTTTGATTTTTCTTATTAA+CGG | - | tig0024141:50224-50243 | Msa1414750:intron | 10.0% |
!! | AATATTAAGATTACTTATTT+CGG | + | tig0024141:50797-50816 | None:intergenic | 10.0% |
!! | TTAATTAGAAAATGTTAAAA+AGG | - | tig0024141:52067-52086 | Msa1414750:intron | 10.0% |
!! | TCTAATAAAATTGAGAAAAT+CGG | + | tig0024141:49323-49342 | None:intergenic | 15.0% |
!!! | TTTAATTTGAACTTGAATTT+AGG | + | tig0024141:49415-49434 | None:intergenic | 15.0% |
!!! | AATAATTGTAAAATTGATTC+CGG | - | tig0024141:49545-49564 | Msa1414750:intron | 15.0% |
!! | ATTTGTATGTAAAGTTATAA+TGG | - | tig0024141:50198-50217 | Msa1414750:intron | 15.0% |
!!! | TTTTAAAATGTTATTACCAA+CGG | - | tig0024141:51221-51240 | Msa1414750:CDS | 15.0% |
!! | ACTAAAATATTTATGAATGA+AGG | - | tig0024141:51589-51608 | Msa1414750:intron | 15.0% |
!!! | ATTATTTTTTCAGACATTTT+TGG | - | tig0024141:52018-52037 | Msa1414750:intron | 15.0% |
!! | TAATAATAATCAATCATACT+GGG | + | tig0024141:52166-52185 | None:intergenic | 15.0% |
!! | TTAATAATAATCAATCATAC+TGG | + | tig0024141:52167-52186 | None:intergenic | 15.0% |
!! | ACATTACAAAAAAAAAAAAC+AGG | + | tig0024141:52443-52462 | None:intergenic | 15.0% |
!!! | AAATCTAGAATGAATTTTGT+AGG | - | tig0024141:49948-49967 | Msa1414750:intron | 20.0% |
!! | ACGGTAATAATTTAAGAAAA+TGG | + | tig0024141:50081-50100 | None:intergenic | 20.0% |
!!! | TATTTTAGTATTAGTTGAAG+AGG | + | tig0024141:51578-51597 | None:intergenic | 20.0% |
!!! | AAAATTTGAAATTGTCGAAA+CGG | + | tig0024141:51874-51893 | None:intergenic | 20.0% |
!!! | CATTTAACTACATATTTTCA+AGG | + | tig0024141:51928-51947 | None:intergenic | 20.0% |
!! | ATGTCTGAAAAAATAATTCA+AGG | + | tig0024141:52015-52034 | None:intergenic | 20.0% |
!! | AATAATAATCAATCATACTG+GGG | + | tig0024141:52165-52184 | None:intergenic | 20.0% |
!! | GAAAATAATATGTACATGTA+AGG | - | tig0024141:52682-52701 | Msa1414750:five_prime_UTR | 20.0% |
!! | TAAATGAATGAAATTTACCA+TGG | - | tig0024141:52766-52785 | Msa1414750:five_prime_UTR | 20.0% |
!! | GCATAGATTTTTGAATATGA+AGG | + | tig0024141:49388-49407 | None:intergenic | 25.0% |
!!! | GAAATCGATTTTGATATGTT+AGG | + | tig0024141:49798-49817 | None:intergenic | 25.0% |
! | CATAACAAATCATCATACAT+TGG | + | tig0024141:50177-50196 | None:intergenic | 25.0% |
! | CAAATTAGTTCAAAAAACAG+CGG | - | tig0024141:50692-50711 | Msa1414750:CDS | 25.0% |
!! | TTTTTATGTTTAGCAAAACC+TGG | - | tig0024141:50875-50894 | Msa1414750:intron | 25.0% |
!!! | CTGAGTTTTGATTTTTACTT+AGG | - | tig0024141:50961-50980 | Msa1414750:intron | 25.0% |
!! | TCTATTGGTTAAAATTCACA+TGG | - | tig0024141:51440-51459 | Msa1414750:intron | 25.0% |
!! | ATATAAGTCCCACATAATTT+TGG | + | tig0024141:51472-51491 | None:intergenic | 25.0% |
!! | CCTACTGATTAAAATTCAAA+TGG | + | tig0024141:51508-51527 | None:intergenic | 25.0% |
!!! | CCATTTGAATTTTAATCAGT+AGG | - | tig0024141:51505-51524 | Msa1414750:intron | 25.0% |
!!! | TCTTGTTATTTGAACTTAAG+AGG | - | tig0024141:51685-51704 | Msa1414750:intron | 25.0% |
!! | AAATTTGAAATTGTCGAAAC+GGG | + | tig0024141:51873-51892 | None:intergenic | 25.0% |
! | ATTATATATGTCACAATTGC+AGG | - | tig0024141:51948-51967 | Msa1414750:intron | 25.0% |
! | TCTGAAAAAATAATTCAAGG+AGG | + | tig0024141:52012-52031 | None:intergenic | 25.0% |
!!! | TTTTTTCAGACATTTTTGGT+TGG | - | tig0024141:52022-52041 | Msa1414750:intron | 25.0% |
! | TCTAATTAATGACTACACAT+GGG | + | tig0024141:52056-52075 | None:intergenic | 25.0% |
! | TTCTAATTAATGACTACACA+TGG | + | tig0024141:52057-52076 | None:intergenic | 25.0% |
! | AGAATAAAGAAGAAATGCAA+CGG | + | tig0024141:52129-52148 | None:intergenic | 25.0% |
! | ATAATAATCAATCATACTGG+GGG | + | tig0024141:52164-52183 | None:intergenic | 25.0% |
! | TTAATTACTTATTTGCCATG+TGG | - | tig0024141:52183-52202 | Msa1414750:intron | 25.0% |
! | TAATTACTTATTTGCCATGT+GGG | - | tig0024141:52184-52203 | Msa1414750:intron | 25.0% |
! | TTGTAATGTGTTTAATCACA+AGG | - | tig0024141:52454-52473 | Msa1414750:CDS | 25.0% |
! | TAATCACAAGGAAATAATAG+TGG | - | tig0024141:52466-52485 | Msa1414750:CDS | 25.0% |
! | GAAAATGACATTGAAAATGA+TGG | + | tig0024141:52521-52540 | None:intergenic | 25.0% |
!! | AAGAACTTGTATATTTTCTG+AGG | - | tig0024141:52569-52588 | Msa1414750:CDS | 25.0% |
! | ATGAATGTAGAAACAAATGA+GGG | + | tig0024141:52641-52660 | None:intergenic | 25.0% |
!! | CTCTTTGTTATTCTTCTTTC+TGG | + | tig0024141:49098-49117 | None:intergenic | 30.0% |
CAGAAAGAAGAATAACAAAG+AGG | - | tig0024141:49096-49115 | Msa1414750:three_prime_UTR | 30.0% | |
AGAAGAAGAAGAATAAGATC+TGG | + | tig0024141:49209-49228 | None:intergenic | 30.0% | |
TAATTCTGTTGCATTTAGCT+AGG | - | tig0024141:49460-49479 | Msa1414750:intron | 30.0% | |
AGGTTATGTCTATTGTAGTA+TGG | - | tig0024141:49480-49499 | Msa1414750:intron | 30.0% | |
ATAGATTCTAACTTGAAGCT+AGG | + | tig0024141:49742-49761 | None:intergenic | 30.0% | |
! | CTTCAAGTTAGAATCTATTC+CGG | - | tig0024141:49744-49763 | Msa1414750:intron | 30.0% |
ATAAATCACTTGCCTATGTT+TGG | + | tig0024141:49860-49879 | None:intergenic | 30.0% | |
GAAATGATTGAGTGTATGTT+TGG | + | tig0024141:50059-50078 | None:intergenic | 30.0% | |
TTATCTATGAAACACAGACA+CGG | + | tig0024141:50100-50119 | None:intergenic | 30.0% | |
TTATCTATGAAACACAGACA+CGG | + | tig0024141:50100-50119 | None:intergenic | 30.0% | |
TACTTACTTTACGTAAAGAG+AGG | - | tig0024141:50254-50273 | Msa1414750:intron | 30.0% | |
AAAAAACATTCACAGAATGC+AGG | - | tig0024141:50334-50353 | Msa1414750:intron | 30.0% | |
TGAAAATTGGAGTGAACTTT+CGG | - | tig0024141:50467-50486 | Msa1414750:intron | 30.0% | |
ACATGCATTGTCTAAAAGTA+CGG | - | tig0024141:50512-50531 | Msa1414750:intron | 30.0% | |
CATTCTTAACACCTTGAAAA+TGG | - | tig0024141:50605-50624 | Msa1414750:CDS | 30.0% | |
! | GTCATCAATTTCCATTTTCA+AGG | + | tig0024141:50619-50638 | None:intergenic | 30.0% |
TTTCACACATATATAAGACC+TGG | - | tig0024141:50669-50688 | Msa1414750:CDS | 30.0% | |
!!! | GTTTTTTGAACTAATTTGCC+AGG | + | tig0024141:50690-50709 | None:intergenic | 30.0% |
CATCAGTAAATTGAAATCGT+TGG | - | tig0024141:50729-50748 | Msa1414750:CDS | 30.0% | |
AGTAAATTGAAATCGTTGGA+TGG | - | tig0024141:50733-50752 | Msa1414750:CDS | 30.0% | |
CAATAGTGTCTCTAATGAAT+CGG | + | tig0024141:50902-50921 | None:intergenic | 30.0% | |
!! | AGAGCATTTTGCATATGATT+GGG | + | tig0024141:51001-51020 | None:intergenic | 30.0% |
GTCATGATCTTTCACAATTA+AGG | + | tig0024141:51354-51373 | None:intergenic | 30.0% | |
TGGATCTTACCAAAATTATG+TGG | - | tig0024141:51460-51479 | Msa1414750:intron | 30.0% | |
GGATCTTACCAAAATTATGT+GGG | - | tig0024141:51461-51480 | Msa1414750:intron | 30.0% | |
TGGGACTTATATGATTTACT+GGG | - | tig0024141:51480-51499 | Msa1414750:intron | 30.0% | |
AAGGTAAAATAACTCATGAC+AGG | - | tig0024141:52086-52105 | Msa1414750:intron | 30.0% | |
GGATATGAAAATAACATGTC+AGG | - | tig0024141:52590-52609 | Msa1414750:CDS | 30.0% | |
TATGAAAATAACATGTCAGG+TGG | - | tig0024141:52593-52612 | Msa1414750:CDS | 30.0% | |
TGAATGTAGAAACAAATGAG+GGG | + | tig0024141:52640-52659 | None:intergenic | 30.0% | |
GATGAATGTAGAAACAAATG+AGG | + | tig0024141:52642-52661 | None:intergenic | 30.0% | |
ATGCAGATTTCAATGAAACA+TGG | + | tig0024141:52716-52735 | None:intergenic | 30.0% | |
AATGGAAGAAAAGGTTCGAA+GGG | + | tig0024141:49266-49285 | None:intergenic | 35.0% | |
AATAGCCTAGAAAAGCTCAT+CGG | + | tig0024141:49441-49460 | None:intergenic | 35.0% | |
!! | TACGCCTCTAAAATCAAATG+TGG | - | tig0024141:50016-50035 | Msa1414750:intron | 35.0% |
!! | TGAGCCACATTTGATTTTAG+AGG | + | tig0024141:50023-50042 | None:intergenic | 35.0% |
!! | AGGATTTGTTGGCTGAAAAT+TGG | - | tig0024141:50454-50473 | Msa1414750:intron | 35.0% |
! | ATGGAAATTGATGACAGCAT+TGG | - | tig0024141:50624-50643 | Msa1414750:CDS | 35.0% |
TCATTGGATGAAGATCAAAC+AGG | + | tig0024141:50822-50841 | None:intergenic | 35.0% | |
AGTCAGCATATTGGAATCAT+TGG | + | tig0024141:50838-50857 | None:intergenic | 35.0% | |
TACCATTCACCTATCACATT+TGG | - | tig0024141:50930-50949 | Msa1414750:intron | 35.0% | |
AACCAAATGTGATAGGTGAA+TGG | + | tig0024141:50935-50954 | None:intergenic | 35.0% | |
GATCATCAACCAAATGTGAT+AGG | + | tig0024141:50942-50961 | None:intergenic | 35.0% | |
! | TTTTGCATATGATTGGGCAA+AGG | + | tig0024141:50995-51014 | None:intergenic | 35.0% |
!! | CAGAGCATTTTGCATATGAT+TGG | + | tig0024141:51002-51021 | None:intergenic | 35.0% |
! | ACCACCTATTTGAATGCTTT+TGG | - | tig0024141:51043-51062 | Msa1414750:intron | 35.0% |
! | CCACCTATTTGAATGCTTTT+GGG | - | tig0024141:51044-51063 | Msa1414750:intron | 35.0% |
CACTTAAAAATGAGATGCAG+TGG | - | tig0024141:51124-51143 | Msa1414750:CDS | 35.0% | |
ATGTTATTACCAACGGCTTA+TGG | - | tig0024141:51228-51247 | Msa1414750:CDS | 35.0% | |
GCTGAAACATATATTCCAGA+AGG | + | tig0024141:51376-51395 | None:intergenic | 35.0% | |
TTTCAGCTGAGAATTATGCT+AGG | - | tig0024141:51389-51408 | Msa1414750:CDS | 35.0% | |
GTGGGACTTATATGATTTAC+TGG | - | tig0024141:51479-51498 | Msa1414750:intron | 35.0% | |
TTTGTTGGATCTCTATGACA+TGG | + | tig0024141:51806-51825 | None:intergenic | 35.0% | |
! | GATCCAACAAAGTTTTACGT+TGG | - | tig0024141:51815-51834 | Msa1414750:intron | 35.0% |
AAATTGTCGAAACGGGTAAA+AGG | + | tig0024141:51866-51885 | None:intergenic | 35.0% | |
TTCTGATCCTTTATCCTATC+TGG | - | tig0024141:52257-52276 | Msa1414750:intron | 35.0% | |
TCTGATCCTTTATCCTATCT+GGG | - | tig0024141:52258-52277 | Msa1414750:intron | 35.0% | |
TTTAGAAACAGTGCATGCAA+TGG | - | tig0024141:52360-52379 | Msa1414750:intron | 35.0% | |
!! | TGGCTTTTAACTATGTCAAC+TGG | - | tig0024141:52486-52505 | Msa1414750:CDS | 35.0% |
!! | GGCTTTTAACTATGTCAACT+GGG | - | tig0024141:52487-52506 | Msa1414750:CDS | 35.0% |
TTTCCATAAGCTGAAAATGC+TGG | - | tig0024141:52537-52556 | Msa1414750:CDS | 35.0% | |
AAAATAACATGTCAGGTGGT+TGG | - | tig0024141:52597-52616 | Msa1414750:CDS | 35.0% | |
TGGAAGAAGAGTTGAGTGAT+CGG | + | tig0024141:49189-49208 | None:intergenic | 40.0% | |
GAATGGAAGAAAAGGTTCGA+AGG | + | tig0024141:49267-49286 | None:intergenic | 40.0% | |
GGAAAAGCGAATGGAAGAAA+AGG | + | tig0024141:49275-49294 | None:intergenic | 40.0% | |
GAAGTGATTGGAAAAGCGAA+TGG | + | tig0024141:49284-49303 | None:intergenic | 40.0% | |
ATTGAGAAAATCGGTACCTG+AGG | + | tig0024141:49314-49333 | None:intergenic | 40.0% | |
! | AAATGCCGATGAGCTTTTCT+AGG | - | tig0024141:49433-49452 | Msa1414750:CDS | 40.0% |
ACACTGAATGTAACCACATG+CGG | + | tig0024141:49517-49536 | None:intergenic | 40.0% | |
CAAGTTAGAATCTATTCCGG+AGG | - | tig0024141:49747-49766 | Msa1414750:intron | 40.0% | |
!! | AGTAGAATCGATTTTGCCTC+CGG | + | tig0024141:49766-49785 | None:intergenic | 40.0% |
! | GCAGCTAGAATTGATTCTAG+AGG | + | tig0024141:49824-49843 | None:intergenic | 40.0% |
! | AATTCTAGCTGCTCTAAACG+TGG | - | tig0024141:49832-49851 | Msa1414750:intron | 40.0% |
CTAAACGTGGAACCAAACAT+AGG | - | tig0024141:49845-49864 | Msa1414750:intron | 40.0% | |
! | TGTATGTTTGGTTCCACTGT+TGG | + | tig0024141:50047-50066 | None:intergenic | 40.0% |
TCTCCTTTCTCAAATGGCAT+AGG | - | tig0024141:50357-50376 | Msa1414750:intron | 40.0% | |
CTCCTTTCTCAAATGGCATA+GGG | - | tig0024141:50358-50377 | Msa1414750:intron | 40.0% | |
TGAAAACGCTGTAAAGCTCA+GGG | + | tig0024141:50434-50453 | None:intergenic | 40.0% | |
TTGAAAACGCTGTAAAGCTC+AGG | + | tig0024141:50435-50454 | None:intergenic | 40.0% | |
! | TGAGCTTTACAGCGTTTTCA+AGG | - | tig0024141:50434-50453 | Msa1414750:intron | 40.0% |
!! | CAGCGTTTTCAAGGATTTGT+TGG | - | tig0024141:50443-50462 | Msa1414750:intron | 40.0% |
! | AAAAGTACGGAAGACAAAGC+TGG | - | tig0024141:50525-50544 | Msa1414750:intron | 40.0% |
ATTTCGGACGCAAATTGATG+AGG | + | tig0024141:50781-50800 | None:intergenic | 40.0% | |
! | TTCCAATATGCTGACTGTAG+TGG | - | tig0024141:50842-50861 | Msa1414750:intron | 40.0% |
!! | CTCTGCGTACCATTTTTGAT+CGG | - | tig0024141:51017-51036 | Msa1414750:intron | 40.0% |
!! | CCCAAAAGCATTCAAATAGG+TGG | + | tig0024141:51047-51066 | None:intergenic | 40.0% |
!! | AGGCCCAAAAGCATTCAAAT+AGG | + | tig0024141:51050-51069 | None:intergenic | 40.0% |
!! | TTTTAGAAACTTGCCCCCAT+TGG | + | tig0024141:51257-51276 | None:intergenic | 40.0% |
!! | GGGGCAAGTTTCTAAAACTA+TGG | - | tig0024141:51260-51279 | Msa1414750:CDS | 40.0% |
TGGAAACATGACAGATAGTC+TGG | - | tig0024141:51280-51299 | Msa1414750:CDS | 40.0% | |
TGTGAAAGATCATGACCTTC+TGG | - | tig0024141:51358-51377 | Msa1414750:CDS | 40.0% | |
TCCAACTCACACTCTTCTAT+TGG | - | tig0024141:51425-51444 | Msa1414750:intron | 40.0% | |
! | ACCAATAGAAGAGTGTGAGT+TGG | + | tig0024141:51429-51448 | None:intergenic | 40.0% |
AGGCTTAGCACTGTAATCAA+TGG | - | tig0024141:51705-51724 | Msa1414750:intron | 40.0% | |
! | TGGTTGTTGTTGTCGAAACA+GGG | + | tig0024141:51753-51772 | None:intergenic | 40.0% |
! | TTGGTTGTTGTTGTCGAAAC+AGG | + | tig0024141:51754-51773 | None:intergenic | 40.0% |
GACAAATATCCCCACTTAGT+GGG | + | tig0024141:51784-51803 | None:intergenic | 40.0% | |
CAGCCAACGTAAAACTTTGT+TGG | + | tig0024141:51821-51840 | None:intergenic | 40.0% | |
TAAAAGGAGAGGGTTGTGTT+AGG | + | tig0024141:51850-51869 | None:intergenic | 40.0% | |
TCAAGGAGGAGTTTGAGAAA+GGG | + | tig0024141:51998-52017 | None:intergenic | 40.0% | |
TTCAAGGAGGAGTTTGAGAA+AGG | + | tig0024141:51999-52018 | None:intergenic | 40.0% | |
TGTAGAACTACTATCCCACA+TGG | + | tig0024141:52201-52220 | None:intergenic | 40.0% | |
CTGATCCTTTATCCTATCTG+GGG | - | tig0024141:52259-52278 | Msa1414750:intron | 40.0% | |
AGAAACCCCAGATAGGATAA+AGG | + | tig0024141:52267-52286 | None:intergenic | 40.0% | |
! | TCACCAGCATTTTCAGCTTA+TGG | + | tig0024141:52543-52562 | None:intergenic | 40.0% |
TCACTTGCAAGCACAAATAC+AGG | - | tig0024141:52660-52679 | Msa1414750:five_prime_UTR | 40.0% | |
GAAGATGAAGACGACGATGA+CGG | - | tig0024141:49144-49163 | Msa1414750:three_prime_UTR | 45.0% | |
AAGATGAAGACGACGATGAC+GGG | - | tig0024141:49145-49164 | Msa1414750:three_prime_UTR | 45.0% | |
AAGAAGAGTTGAGTGATCGG+AGG | + | tig0024141:49186-49205 | None:intergenic | 45.0% | |
AGAAAATCGGTACCTGAGGA+GGG | + | tig0024141:49310-49329 | None:intergenic | 45.0% | |
!! | CTCTTCGACTCACTTTTAGC+CGG | + | tig0024141:49567-49586 | None:intergenic | 45.0% |
GCTAAAAGTGAGTCGAAGAG+TGG | - | tig0024141:49567-49586 | Msa1414750:intron | 45.0% | |
AAATGTGGCTCATCCAACAG+TGG | - | tig0024141:50031-50050 | Msa1414750:intron | 45.0% | |
TGCAGGTCTCCTTTCTCAAA+TGG | - | tig0024141:50351-50370 | Msa1414750:intron | 45.0% | |
! | CTCCCTATGCCATTTGAGAA+AGG | + | tig0024141:50363-50382 | None:intergenic | 45.0% |
! | AGCTCAGGGTCTTTTATGTC+AGG | + | tig0024141:50420-50439 | None:intergenic | 45.0% |
GGAAGACAAAGCTGGTAAAG+AGG | - | tig0024141:50533-50552 | Msa1414750:intron | 45.0% | |
! | GATGACAGCATTGGATTGAG+TGG | - | tig0024141:50633-50652 | Msa1414750:CDS | 45.0% |
AGCCACTACAGTCAGCATAT+TGG | + | tig0024141:50847-50866 | None:intergenic | 45.0% | |
TGTCTCTAATGAATCGGACC+AGG | + | tig0024141:50896-50915 | None:intergenic | 45.0% | |
! | GGTGGTGTACCGATCAAAAA+TGG | + | tig0024141:51029-51048 | None:intergenic | 45.0% |
TTCCGCAGATAGTTCTCATC+AGG | + | tig0024141:51070-51089 | None:intergenic | 45.0% | |
TGAGAACTATCTGCGGAAGA+AGG | - | tig0024141:51072-51091 | Msa1414750:intron | 45.0% | |
AAAATGAGATGCAGTGGCCT+TGG | - | tig0024141:51130-51149 | Msa1414750:CDS | 45.0% | |
GTATGATACCTTTCCCCACT+CGG | + | tig0024141:51158-51177 | None:intergenic | 45.0% | |
!! | GTTGCTTTCAAGTTGAAGCG+CGG | - | tig0024141:51302-51321 | Msa1414750:CDS | 45.0% |
! | ATCAGTAGGAGAGAGCGTAT+TGG | - | tig0024141:51519-51538 | Msa1414750:intron | 45.0% |
AGGGGTTCAAATAACGAGAG+TGG | + | tig0024141:51734-51753 | None:intergenic | 45.0% | |
! | GGTTGTTGTTGTCGAAACAG+GGG | + | tig0024141:51752-51771 | None:intergenic | 45.0% |
! | CAAGCCTTATCCCACTAAGT+GGG | - | tig0024141:51771-51790 | Msa1414750:intron | 45.0% |
! | AAGCCTTATCCCACTAAGTG+GGG | - | tig0024141:51772-51791 | Msa1414750:intron | 45.0% |
TATCCCCACTTAGTGGGATA+AGG | + | tig0024141:51778-51797 | None:intergenic | 45.0% | |
GGACAAATATCCCCACTTAG+TGG | + | tig0024141:51785-51804 | None:intergenic | 45.0% | |
!! | AAGTTTTACGTTGGCTGTCG+AGG | - | tig0024141:51824-51843 | Msa1414750:intron | 45.0% |
TCGAAACGGGTAAAAGGAGA+GGG | + | tig0024141:51860-51879 | None:intergenic | 45.0% | |
GTTACGGTTCTTGGAACTTC+TGG | - | tig0024141:52294-52313 | Msa1414750:intron | 45.0% | |
ACAGGAGAAGACGAATCGAA+GGG | + | tig0024141:52425-52444 | None:intergenic | 45.0% | |
AACAGGAGAAGACGAATCGA+AGG | + | tig0024141:52426-52445 | None:intergenic | 45.0% | |
GTTGAGTGATCGGAGGAACA+AGG | + | tig0024141:49179-49198 | None:intergenic | 50.0% | |
AGAAAAGGTTCGAAGGGTGG+TGG | + | tig0024141:49260-49279 | None:intergenic | 50.0% | |
GGAAGAAAAGGTTCGAAGGG+TGG | + | tig0024141:49263-49282 | None:intergenic | 50.0% | |
TGAGGAGGGAGAGAAGTGAT+TGG | + | tig0024141:49296-49315 | None:intergenic | 50.0% | |
AATCACTTCTCTCCCTCCTC+AGG | - | tig0024141:49295-49314 | Msa1414750:three_prime_UTR | 50.0% | |
GAGAAAATCGGTACCTGAGG+AGG | + | tig0024141:49311-49330 | None:intergenic | 50.0% | |
GGAGTAATGAACACCGCATG+TGG | - | tig0024141:49501-49520 | Msa1414750:intron | 50.0% | |
AGGTTGTGACCAACGTGTTC+CGG | - | tig0024141:50553-50572 | Msa1414750:intron | 50.0% | |
ACCAAACTCCTCAACAGCCT+GGG | + | tig0024141:50583-50602 | None:intergenic | 50.0% | |
GGCCTGATGAGAACTATCTG+CGG | - | tig0024141:51065-51084 | Msa1414750:intron | 50.0% | |
GAACTATCTGCGGAAGAAGG+TGG | - | tig0024141:51075-51094 | Msa1414750:intron | 50.0% | |
AAGAAGGTGGAGCAGGAGTT+GGG | - | tig0024141:51088-51107 | Msa1414750:intron | 50.0% | |
AACGGCTTATGGCTGCCAAT+GGG | - | tig0024141:51239-51258 | Msa1414750:CDS | 50.0% | |
CCACTTAGTGGGATAAGGCT+TGG | + | tig0024141:51773-51792 | None:intergenic | 50.0% | |
! | CCAAGCCTTATCCCACTAAG+TGG | - | tig0024141:51770-51789 | Msa1414750:intron | 50.0% |
GTCGAAACGGGTAAAAGGAG+AGG | + | tig0024141:51861-51880 | None:intergenic | 50.0% | |
CTGCAACAGAAACCCCAGAT+AGG | + | tig0024141:52274-52293 | None:intergenic | 50.0% | |
! | CTATCTGGGGTTTCTGTTGC+AGG | - | tig0024141:52272-52291 | Msa1414750:intron | 50.0% |
GGGGTTTCTGTTGCAGGTTA+CGG | - | tig0024141:52278-52297 | Msa1414750:intron | 50.0% | |
CTGTTGCAGGTTACGGTTCT+TGG | - | tig0024141:52285-52304 | Msa1414750:intron | 50.0% | |
CTTGGAACTTCTGGACTTGC+AGG | - | tig0024141:52303-52322 | Msa1414750:intron | 50.0% | |
! | AAAGGTTCGAAGGGTGGTGG+TGG | + | tig0024141:49257-49276 | None:intergenic | 55.0% |
GGTTGTGACCAACGTGTTCC+GGG | - | tig0024141:50554-50573 | Msa1414750:intron | 55.0% | |
CACCAAACTCCTCAACAGCC+TGG | + | tig0024141:50584-50603 | None:intergenic | 55.0% | |
CAGGCTGTTGAGGAGTTTGG+TGG | - | tig0024141:50582-50601 | Msa1414750:intron | 55.0% | |
! | CAGCATTGGATTGAGTGGCG+AGG | - | tig0024141:50638-50657 | Msa1414750:CDS | 55.0% |
GAAGAAGGTGGAGCAGGAGT+TGG | - | tig0024141:51087-51106 | Msa1414750:intron | 55.0% | |
CATTGGCAGCCATAAGCCGT+TGG | + | tig0024141:51240-51259 | None:intergenic | 55.0% | |
CAACGGCTTATGGCTGCCAA+TGG | - | tig0024141:51238-51257 | Msa1414750:CDS | 55.0% | |
ACGGCTTATGGCTGCCAATG+GGG | - | tig0024141:51240-51259 | Msa1414750:CDS | 55.0% | |
!! | TCGAAGGGTGGTGGTGGATG+CGG | + | tig0024141:49251-49270 | None:intergenic | 60.0% |
GCCCAGGCTGTTGAGGAGTT+TGG | - | tig0024141:50579-50598 | Msa1414750:intron | 60.0% | |
TCTGCGGAAGAAGGTGGAGC+AGG | - | tig0024141:51081-51100 | Msa1414750:intron | 60.0% | |
! | CAGTGGCCTTGGTTCCGAGT+GGG | - | tig0024141:51141-51160 | Msa1414750:CDS | 60.0% |
! | AGTGGCCTTGGTTCCGAGTG+GGG | - | tig0024141:51142-51161 | Msa1414750:CDS | 60.0% |
CCTTTCCCCACTCGGAACCA+AGG | + | tig0024141:51150-51169 | None:intergenic | 60.0% | |
CCTTGGTTCCGAGTGGGGAA+AGG | - | tig0024141:51147-51166 | Msa1414750:CDS | 60.0% | |
CGGCTTATGGCTGCCAATGG+GGG | - | tig0024141:51241-51260 | Msa1414750:CDS | 60.0% | |
!! | AAGGGTGGTGGTGGATGCGG+TGG | + | tig0024141:49248-49267 | None:intergenic | 65.0% |
! | GCAGTGGCCTTGGTTCCGAG+TGG | - | tig0024141:51140-51159 | Msa1414750:CDS | 65.0% |
!! | GGTGGTGGTGGATGCGGTGG+CGG | + | tig0024141:49245-49264 | None:intergenic | 70.0% |
CTGGGCAGCCCGGAACACGT+TGG | + | tig0024141:50565-50584 | None:intergenic | 70.0% | |
CAACGTGTTCCGGGCTGCCC+AGG | - | tig0024141:50563-50582 | Msa1414750:intron | 70.0% | |
CCTCAACAGCCTGGGCAGCC+CGG | + | tig0024141:50575-50594 | None:intergenic | 70.0% | |
!! | GGTGGTGGATGCGGTGGCGG+CGG | + | tig0024141:49242-49261 | None:intergenic | 75.0% |
CCGGGCTGCCCAGGCTGTTG+AGG | - | tig0024141:50572-50591 | Msa1414750:intron | 75.0% | |
!! | TGCGGTGGCGGCGGCGATGG+CGG | + | tig0024141:49233-49252 | None:intergenic | 80.0% |
!! | GGATGCGGTGGCGGCGGCGA+TGG | + | tig0024141:49236-49255 | None:intergenic | 80.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
tig0024141 | gene | 48974 | 52794 | 48974 | ID=Msa1414750;Name=Msa1414750 |
tig0024141 | mRNA | 48974 | 52794 | 48974 | ID=Msa1414750-mRNA-1;Parent=Msa1414750;Name=Msa1414750-mRNA-1;_AED=0.08;_eAED=0.08;_QI=174|1|1|1|1|1|4|444|240 |
tig0024141 | exon | 48974 | 49474 | 48974 | ID=Msa1414750-mRNA-1:exon:21971;Parent=Msa1414750-mRNA-1 |
tig0024141 | exon | 50600 | 50785 | 50600 | ID=Msa1414750-mRNA-1:exon:21970;Parent=Msa1414750-mRNA-1 |
tig0024141 | exon | 51109 | 51419 | 51109 | ID=Msa1414750-mRNA-1:exon:21969;Parent=Msa1414750-mRNA-1 |
tig0024141 | exon | 52452 | 52794 | 52452 | ID=Msa1414750-mRNA-1:exon:21968;Parent=Msa1414750-mRNA-1 |
tig0024141 | five_prime_UTR | 52621 | 52794 | 52621 | ID=Msa1414750-mRNA-1:five_prime_utr;Parent=Msa1414750-mRNA-1 |
tig0024141 | CDS | 52452 | 52620 | 52452 | ID=Msa1414750-mRNA-1:cds;Parent=Msa1414750-mRNA-1 |
tig0024141 | CDS | 51109 | 51419 | 51109 | ID=Msa1414750-mRNA-1:cds;Parent=Msa1414750-mRNA-1 |
tig0024141 | CDS | 50600 | 50785 | 50600 | ID=Msa1414750-mRNA-1:cds;Parent=Msa1414750-mRNA-1 |
tig0024141 | CDS | 49418 | 49474 | 49418 | ID=Msa1414750-mRNA-1:cds;Parent=Msa1414750-mRNA-1 |
tig0024141 | three_prime_UTR | 48974 | 49417 | 48974 | ID=Msa1414750-mRNA-1:three_prime_utr;Parent=Msa1414750-mRNA-1 |
Gene Sequence |
Protein sequence |