AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1414750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414750 MtrunA17_Chr1g0153721 95.833 240 8 1 1 240 1 238 7.64e-172 472
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1414750 AT1G47420.1 65.285 193 67 0 48 240 65 257 2.16e-93 275

Find 88 sgRNAs with CRISPR-Local

Find 236 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTTTGTTATTCTTCTTTC+TGG 0.057893 tig0024141:+52651 None:intergenic
TGGTAAATTAATTAATTAAA+AGG 0.168428 tig0024141:+52671 None:intergenic
CTGTTGCAGGTTACGGTTCT+TGG 0.177677 tig0024141:-49461 Msa1414750:intron
ACCACCTATTTGAATGCTTT+TGG 0.218652 tig0024141:-50703 Msa1414750:CDS
CTTGGAACTTCTGGACTTGC+AGG 0.234009 tig0024141:-49443 Msa1414750:CDS
AGGATTTGTTGGCTGAAAAT+TGG 0.234472 tig0024141:-51292 Msa1414750:CDS
GTTACGGTTCTTGGAACTTC+TGG 0.243971 tig0024141:-49452 Msa1414750:CDS
CATTCTTAACACCTTGAAAA+TGG 0.246950 tig0024141:-51141 Msa1414750:CDS
GCCCAGGCTGTTGAGGAGTT+TGG 0.326153 tig0024141:-51167 Msa1414750:CDS
AGGTTGTGACCAACGTGTTC+CGG 0.337909 tig0024141:-51193 Msa1414750:CDS
GGTGGTGGTGGATGCGGTGG+CGG 0.342219 tig0024141:+52504 None:intergenic
GGTGGTGGATGCGGTGGCGG+CGG 0.379762 tig0024141:+52507 None:intergenic
GGATGCGGTGGCGGCGGCGA+TGG 0.392017 tig0024141:+52513 None:intergenic
GGTTGTGACCAACGTGTTCC+GGG 0.394752 tig0024141:-51192 Msa1414750:CDS
AAAATGAGATGCAGTGGCCT+TGG 0.418966 tig0024141:-50616 Msa1414750:CDS
AGGCCCAAAAGCATTCAAAT+AGG 0.424380 tig0024141:+50699 None:intergenic
TGAAAATTGGAGTGAACTTT+CGG 0.427877 tig0024141:-51279 Msa1414750:CDS
CAACGTGTTCCGGGCTGCCC+AGG 0.437017 tig0024141:-51183 Msa1414750:CDS
AAGATGAAGACGACGATGAC+GGG 0.443304 tig0024141:-52601 Msa1414750:CDS
TTCCGCAGATAGTTCTCATC+AGG 0.443596 tig0024141:+50679 None:intergenic
CACCAAACTCCTCAACAGCC+TGG 0.455913 tig0024141:+51165 None:intergenic
TCGAAGGGTGGTGGTGGATG+CGG 0.456198 tig0024141:+52498 None:intergenic
TTGAAAACGCTGTAAAGCTC+AGG 0.460031 tig0024141:+51314 None:intergenic
GAAAATAATATGTACATGTA+AGG 0.460667 tig0024141:-49064 Msa1414750:three_prime_UTR
AATCACTTCTCTCCCTCCTC+AGG 0.463942 tig0024141:-52451 Msa1414750:intron
TGCAGGTCTCCTTTCTCAAA+TGG 0.464321 tig0024141:-51395 Msa1414750:CDS
TAATCACAAGGAAATAATAG+TGG 0.471530 tig0024141:-49280 Msa1414750:three_prime_UTR
TGCGGTGGCGGCGGCGATGG+CGG 0.477763 tig0024141:+52516 None:intergenic
TCACTTGCAAGCACAAATAC+AGG 0.480289 tig0024141:-49086 Msa1414750:three_prime_UTR
GAAGAAGGTGGAGCAGGAGT+TGG 0.480618 tig0024141:-50659 Msa1414750:CDS
ATGGAAATTGATGACAGCAT+TGG 0.480709 tig0024141:-51122 Msa1414750:CDS
CCGGGCTGCCCAGGCTGTTG+AGG 0.484832 tig0024141:-51174 Msa1414750:CDS
AGAAGAAGAAGAATAAGATC+TGG 0.486025 tig0024141:+52540 None:intergenic
AAGAAGGTGGAGCAGGAGTT+GGG 0.489661 tig0024141:-50658 Msa1414750:CDS
CCTCAACAGCCTGGGCAGCC+CGG 0.493044 tig0024141:+51174 None:intergenic
GGAAAAGCGAATGGAAGAAA+AGG 0.493818 tig0024141:+52474 None:intergenic
AAAGGTTCGAAGGGTGGTGG+TGG 0.494406 tig0024141:+52492 None:intergenic
GAAAATGACATTGAAAATGA+TGG 0.495004 tig0024141:+49228 None:intergenic
CTCCCTATGCCATTTGAGAA+AGG 0.499228 tig0024141:+51386 None:intergenic
AGAAAAGGTTCGAAGGGTGG+TGG 0.503842 tig0024141:+52489 None:intergenic
ACCAAACTCCTCAACAGCCT+GGG 0.509277 tig0024141:+51166 None:intergenic
GAGAAAATCGGTACCTGAGG+AGG 0.511296 tig0024141:+52438 None:intergenic
TTTCCATAAGCTGAAAATGC+TGG 0.515646 tig0024141:-49209 Msa1414750:three_prime_UTR
CAGTGGCCTTGGTTCCGAGT+GGG 0.516709 tig0024141:-50605 Msa1414750:CDS
GGATATGAAAATAACATGTC+AGG 0.517735 tig0024141:-49156 Msa1414750:three_prime_UTR
CTCCTTTCTCAAATGGCATA+GGG 0.521545 tig0024141:-51388 Msa1414750:CDS
ACATGCATTGTCTAAAAGTA+CGG 0.522315 tig0024141:-51234 Msa1414750:CDS
TGAGGAGGGAGAGAAGTGAT+TGG 0.523679 tig0024141:+52453 None:intergenic
TCTCCTTTCTCAAATGGCAT+AGG 0.527635 tig0024141:-51389 Msa1414750:CDS
GATGAATGTAGAAACAAATG+AGG 0.530219 tig0024141:+49107 None:intergenic
AAAATAACATGTCAGGTGGT+TGG 0.531068 tig0024141:-49149 Msa1414750:three_prime_UTR
TTGTAATGTGTTTAATCACA+AGG 0.531103 tig0024141:-49292 Msa1414750:three_prime_UTR
GAAGATGAAGACGACGATGA+CGG 0.532162 tig0024141:-52602 Msa1414750:exon
ATGAATGTAGAAACAAATGA+GGG 0.532577 tig0024141:+49108 None:intergenic
CCTTGGTTCCGAGTGGGGAA+AGG 0.533151 tig0024141:-50599 Msa1414750:intron
AAGGGTGGTGGTGGATGCGG+TGG 0.534788 tig0024141:+52501 None:intergenic
GAAGTGATTGGAAAAGCGAA+TGG 0.547097 tig0024141:+52465 None:intergenic
CAGGCTGTTGAGGAGTTTGG+TGG 0.550683 tig0024141:-51164 Msa1414750:CDS
TCTGCGGAAGAAGGTGGAGC+AGG 0.555544 tig0024141:-50665 Msa1414750:CDS
TTTAGAAACAGTGCATGCAA+TGG 0.557202 tig0024141:-49386 Msa1414750:three_prime_UTR
TGGAAGAAGAGTTGAGTGAT+CGG 0.557922 tig0024141:+52560 None:intergenic
GTATGATACCTTTCCCCACT+CGG 0.558910 tig0024141:+50591 None:intergenic
TGAGAACTATCTGCGGAAGA+AGG 0.560063 tig0024141:-50674 Msa1414750:CDS
GGAAGAAAAGGTTCGAAGGG+TGG 0.562521 tig0024141:+52486 None:intergenic
AACAGGAGAAGACGAATCGA+AGG 0.573392 tig0024141:+49323 None:intergenic
AAAAGTACGGAAGACAAAGC+TGG 0.589361 tig0024141:-51221 Msa1414750:CDS
GAACTATCTGCGGAAGAAGG+TGG 0.593130 tig0024141:-50671 Msa1414750:CDS
CCTTTCCCCACTCGGAACCA+AGG 0.603297 tig0024141:+50599 None:intergenic
AGAAAATCGGTACCTGAGGA+GGG 0.603357 tig0024141:+52439 None:intergenic
GGAAGACAAAGCTGGTAAAG+AGG 0.606264 tig0024141:-51213 Msa1414750:CDS
CCCAAAAGCATTCAAATAGG+TGG 0.606425 tig0024141:+50702 None:intergenic
GAATGGAAGAAAAGGTTCGA+AGG 0.610270 tig0024141:+52482 None:intergenic
TGAAAACGCTGTAAAGCTCA+GGG 0.610631 tig0024141:+51315 None:intergenic
AGTGGCCTTGGTTCCGAGTG+GGG 0.611793 tig0024141:-50604 Msa1414750:CDS
CAGAAAGAAGAATAACAAAG+AGG 0.613591 tig0024141:-52650 Msa1414750:five_prime_UTR
GCAGTGGCCTTGGTTCCGAG+TGG 0.620623 tig0024141:-50606 Msa1414750:CDS
GTTGAGTGATCGGAGGAACA+AGG 0.623875 tig0024141:+52570 None:intergenic
GATGACAGCATTGGATTGAG+TGG 0.638728 tig0024141:-51113 Msa1414750:CDS
AATGGAAGAAAAGGTTCGAA+GGG 0.640544 tig0024141:+52483 None:intergenic
TATGAAAATAACATGTCAGG+TGG 0.642539 tig0024141:-49153 Msa1414750:three_prime_UTR
TAAATGAATGAAATTTACCA+TGG 0.642987 tig0024141:-48980 Msa1414750:three_prime_UTR
ACAGGAGAAGACGAATCGAA+GGG 0.675377 tig0024141:+49324 None:intergenic
GGCCTGATGAGAACTATCTG+CGG 0.678017 tig0024141:-50681 Msa1414750:CDS
CTGGGCAGCCCGGAACACGT+TGG 0.682652 tig0024141:+51184 None:intergenic
ATGCAGATTTCAATGAAACA+TGG 0.683287 tig0024141:+49033 None:intergenic
AAGAAGAGTTGAGTGATCGG+AGG 0.693570 tig0024141:+52563 None:intergenic
CAGCATTGGATTGAGTGGCG+AGG 0.695792 tig0024141:-51108 Msa1414750:intron
TGAATGTAGAAACAAATGAG+GGG 0.742717 tig0024141:+49109 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGGTAAATTAATTAATTAAA+AGG + tig0024141:49078-49097 None:intergenic 10.0%
!!! ATTTTGATTTTTCTTATTAA+CGG - tig0024141:50224-50243 Msa1414750:intron 10.0%
!! AATATTAAGATTACTTATTT+CGG + tig0024141:50797-50816 None:intergenic 10.0%
!! TTAATTAGAAAATGTTAAAA+AGG - tig0024141:52067-52086 Msa1414750:intron 10.0%
!! TCTAATAAAATTGAGAAAAT+CGG + tig0024141:49323-49342 None:intergenic 15.0%
!!! TTTAATTTGAACTTGAATTT+AGG + tig0024141:49415-49434 None:intergenic 15.0%
!!! AATAATTGTAAAATTGATTC+CGG - tig0024141:49545-49564 Msa1414750:intron 15.0%
!! ATTTGTATGTAAAGTTATAA+TGG - tig0024141:50198-50217 Msa1414750:intron 15.0%
!!! TTTTAAAATGTTATTACCAA+CGG - tig0024141:51221-51240 Msa1414750:CDS 15.0%
!! ACTAAAATATTTATGAATGA+AGG - tig0024141:51589-51608 Msa1414750:intron 15.0%
!!! ATTATTTTTTCAGACATTTT+TGG - tig0024141:52018-52037 Msa1414750:intron 15.0%
!! TAATAATAATCAATCATACT+GGG + tig0024141:52166-52185 None:intergenic 15.0%
!! TTAATAATAATCAATCATAC+TGG + tig0024141:52167-52186 None:intergenic 15.0%
!! ACATTACAAAAAAAAAAAAC+AGG + tig0024141:52443-52462 None:intergenic 15.0%
!!! AAATCTAGAATGAATTTTGT+AGG - tig0024141:49948-49967 Msa1414750:intron 20.0%
!! ACGGTAATAATTTAAGAAAA+TGG + tig0024141:50081-50100 None:intergenic 20.0%
!!! TATTTTAGTATTAGTTGAAG+AGG + tig0024141:51578-51597 None:intergenic 20.0%
!!! AAAATTTGAAATTGTCGAAA+CGG + tig0024141:51874-51893 None:intergenic 20.0%
!!! CATTTAACTACATATTTTCA+AGG + tig0024141:51928-51947 None:intergenic 20.0%
!! ATGTCTGAAAAAATAATTCA+AGG + tig0024141:52015-52034 None:intergenic 20.0%
!! AATAATAATCAATCATACTG+GGG + tig0024141:52165-52184 None:intergenic 20.0%
!! GAAAATAATATGTACATGTA+AGG - tig0024141:52682-52701 Msa1414750:five_prime_UTR 20.0%
!! TAAATGAATGAAATTTACCA+TGG - tig0024141:52766-52785 Msa1414750:five_prime_UTR 20.0%
!! GCATAGATTTTTGAATATGA+AGG + tig0024141:49388-49407 None:intergenic 25.0%
!!! GAAATCGATTTTGATATGTT+AGG + tig0024141:49798-49817 None:intergenic 25.0%
! CATAACAAATCATCATACAT+TGG + tig0024141:50177-50196 None:intergenic 25.0%
! CAAATTAGTTCAAAAAACAG+CGG - tig0024141:50692-50711 Msa1414750:CDS 25.0%
!! TTTTTATGTTTAGCAAAACC+TGG - tig0024141:50875-50894 Msa1414750:intron 25.0%
!!! CTGAGTTTTGATTTTTACTT+AGG - tig0024141:50961-50980 Msa1414750:intron 25.0%
!! TCTATTGGTTAAAATTCACA+TGG - tig0024141:51440-51459 Msa1414750:intron 25.0%
!! ATATAAGTCCCACATAATTT+TGG + tig0024141:51472-51491 None:intergenic 25.0%
!! CCTACTGATTAAAATTCAAA+TGG + tig0024141:51508-51527 None:intergenic 25.0%
!!! CCATTTGAATTTTAATCAGT+AGG - tig0024141:51505-51524 Msa1414750:intron 25.0%
!!! TCTTGTTATTTGAACTTAAG+AGG - tig0024141:51685-51704 Msa1414750:intron 25.0%
!! AAATTTGAAATTGTCGAAAC+GGG + tig0024141:51873-51892 None:intergenic 25.0%
! ATTATATATGTCACAATTGC+AGG - tig0024141:51948-51967 Msa1414750:intron 25.0%
! TCTGAAAAAATAATTCAAGG+AGG + tig0024141:52012-52031 None:intergenic 25.0%
!!! TTTTTTCAGACATTTTTGGT+TGG - tig0024141:52022-52041 Msa1414750:intron 25.0%
! TCTAATTAATGACTACACAT+GGG + tig0024141:52056-52075 None:intergenic 25.0%
! TTCTAATTAATGACTACACA+TGG + tig0024141:52057-52076 None:intergenic 25.0%
! AGAATAAAGAAGAAATGCAA+CGG + tig0024141:52129-52148 None:intergenic 25.0%
! ATAATAATCAATCATACTGG+GGG + tig0024141:52164-52183 None:intergenic 25.0%
! TTAATTACTTATTTGCCATG+TGG - tig0024141:52183-52202 Msa1414750:intron 25.0%
! TAATTACTTATTTGCCATGT+GGG - tig0024141:52184-52203 Msa1414750:intron 25.0%
! TTGTAATGTGTTTAATCACA+AGG - tig0024141:52454-52473 Msa1414750:CDS 25.0%
! TAATCACAAGGAAATAATAG+TGG - tig0024141:52466-52485 Msa1414750:CDS 25.0%
! GAAAATGACATTGAAAATGA+TGG + tig0024141:52521-52540 None:intergenic 25.0%
!! AAGAACTTGTATATTTTCTG+AGG - tig0024141:52569-52588 Msa1414750:CDS 25.0%
! ATGAATGTAGAAACAAATGA+GGG + tig0024141:52641-52660 None:intergenic 25.0%
!! CTCTTTGTTATTCTTCTTTC+TGG + tig0024141:49098-49117 None:intergenic 30.0%
CAGAAAGAAGAATAACAAAG+AGG - tig0024141:49096-49115 Msa1414750:three_prime_UTR 30.0%
AGAAGAAGAAGAATAAGATC+TGG + tig0024141:49209-49228 None:intergenic 30.0%
TAATTCTGTTGCATTTAGCT+AGG - tig0024141:49460-49479 Msa1414750:intron 30.0%
AGGTTATGTCTATTGTAGTA+TGG - tig0024141:49480-49499 Msa1414750:intron 30.0%
ATAGATTCTAACTTGAAGCT+AGG + tig0024141:49742-49761 None:intergenic 30.0%
! CTTCAAGTTAGAATCTATTC+CGG - tig0024141:49744-49763 Msa1414750:intron 30.0%
ATAAATCACTTGCCTATGTT+TGG + tig0024141:49860-49879 None:intergenic 30.0%
GAAATGATTGAGTGTATGTT+TGG + tig0024141:50059-50078 None:intergenic 30.0%
TTATCTATGAAACACAGACA+CGG + tig0024141:50100-50119 None:intergenic 30.0%
TTATCTATGAAACACAGACA+CGG + tig0024141:50100-50119 None:intergenic 30.0%
TACTTACTTTACGTAAAGAG+AGG - tig0024141:50254-50273 Msa1414750:intron 30.0%
AAAAAACATTCACAGAATGC+AGG - tig0024141:50334-50353 Msa1414750:intron 30.0%
TGAAAATTGGAGTGAACTTT+CGG - tig0024141:50467-50486 Msa1414750:intron 30.0%
ACATGCATTGTCTAAAAGTA+CGG - tig0024141:50512-50531 Msa1414750:intron 30.0%
CATTCTTAACACCTTGAAAA+TGG - tig0024141:50605-50624 Msa1414750:CDS 30.0%
! GTCATCAATTTCCATTTTCA+AGG + tig0024141:50619-50638 None:intergenic 30.0%
TTTCACACATATATAAGACC+TGG - tig0024141:50669-50688 Msa1414750:CDS 30.0%
!!! GTTTTTTGAACTAATTTGCC+AGG + tig0024141:50690-50709 None:intergenic 30.0%
CATCAGTAAATTGAAATCGT+TGG - tig0024141:50729-50748 Msa1414750:CDS 30.0%
AGTAAATTGAAATCGTTGGA+TGG - tig0024141:50733-50752 Msa1414750:CDS 30.0%
CAATAGTGTCTCTAATGAAT+CGG + tig0024141:50902-50921 None:intergenic 30.0%
!! AGAGCATTTTGCATATGATT+GGG + tig0024141:51001-51020 None:intergenic 30.0%
GTCATGATCTTTCACAATTA+AGG + tig0024141:51354-51373 None:intergenic 30.0%
TGGATCTTACCAAAATTATG+TGG - tig0024141:51460-51479 Msa1414750:intron 30.0%
GGATCTTACCAAAATTATGT+GGG - tig0024141:51461-51480 Msa1414750:intron 30.0%
TGGGACTTATATGATTTACT+GGG - tig0024141:51480-51499 Msa1414750:intron 30.0%
AAGGTAAAATAACTCATGAC+AGG - tig0024141:52086-52105 Msa1414750:intron 30.0%
GGATATGAAAATAACATGTC+AGG - tig0024141:52590-52609 Msa1414750:CDS 30.0%
TATGAAAATAACATGTCAGG+TGG - tig0024141:52593-52612 Msa1414750:CDS 30.0%
TGAATGTAGAAACAAATGAG+GGG + tig0024141:52640-52659 None:intergenic 30.0%
GATGAATGTAGAAACAAATG+AGG + tig0024141:52642-52661 None:intergenic 30.0%
ATGCAGATTTCAATGAAACA+TGG + tig0024141:52716-52735 None:intergenic 30.0%
AATGGAAGAAAAGGTTCGAA+GGG + tig0024141:49266-49285 None:intergenic 35.0%
AATAGCCTAGAAAAGCTCAT+CGG + tig0024141:49441-49460 None:intergenic 35.0%
!! TACGCCTCTAAAATCAAATG+TGG - tig0024141:50016-50035 Msa1414750:intron 35.0%
!! TGAGCCACATTTGATTTTAG+AGG + tig0024141:50023-50042 None:intergenic 35.0%
!! AGGATTTGTTGGCTGAAAAT+TGG - tig0024141:50454-50473 Msa1414750:intron 35.0%
! ATGGAAATTGATGACAGCAT+TGG - tig0024141:50624-50643 Msa1414750:CDS 35.0%
TCATTGGATGAAGATCAAAC+AGG + tig0024141:50822-50841 None:intergenic 35.0%
AGTCAGCATATTGGAATCAT+TGG + tig0024141:50838-50857 None:intergenic 35.0%
TACCATTCACCTATCACATT+TGG - tig0024141:50930-50949 Msa1414750:intron 35.0%
AACCAAATGTGATAGGTGAA+TGG + tig0024141:50935-50954 None:intergenic 35.0%
GATCATCAACCAAATGTGAT+AGG + tig0024141:50942-50961 None:intergenic 35.0%
! TTTTGCATATGATTGGGCAA+AGG + tig0024141:50995-51014 None:intergenic 35.0%
!! CAGAGCATTTTGCATATGAT+TGG + tig0024141:51002-51021 None:intergenic 35.0%
! ACCACCTATTTGAATGCTTT+TGG - tig0024141:51043-51062 Msa1414750:intron 35.0%
! CCACCTATTTGAATGCTTTT+GGG - tig0024141:51044-51063 Msa1414750:intron 35.0%
CACTTAAAAATGAGATGCAG+TGG - tig0024141:51124-51143 Msa1414750:CDS 35.0%
ATGTTATTACCAACGGCTTA+TGG - tig0024141:51228-51247 Msa1414750:CDS 35.0%
GCTGAAACATATATTCCAGA+AGG + tig0024141:51376-51395 None:intergenic 35.0%
TTTCAGCTGAGAATTATGCT+AGG - tig0024141:51389-51408 Msa1414750:CDS 35.0%
GTGGGACTTATATGATTTAC+TGG - tig0024141:51479-51498 Msa1414750:intron 35.0%
TTTGTTGGATCTCTATGACA+TGG + tig0024141:51806-51825 None:intergenic 35.0%
! GATCCAACAAAGTTTTACGT+TGG - tig0024141:51815-51834 Msa1414750:intron 35.0%
AAATTGTCGAAACGGGTAAA+AGG + tig0024141:51866-51885 None:intergenic 35.0%
TTCTGATCCTTTATCCTATC+TGG - tig0024141:52257-52276 Msa1414750:intron 35.0%
TCTGATCCTTTATCCTATCT+GGG - tig0024141:52258-52277 Msa1414750:intron 35.0%
TTTAGAAACAGTGCATGCAA+TGG - tig0024141:52360-52379 Msa1414750:intron 35.0%
!! TGGCTTTTAACTATGTCAAC+TGG - tig0024141:52486-52505 Msa1414750:CDS 35.0%
!! GGCTTTTAACTATGTCAACT+GGG - tig0024141:52487-52506 Msa1414750:CDS 35.0%
TTTCCATAAGCTGAAAATGC+TGG - tig0024141:52537-52556 Msa1414750:CDS 35.0%
AAAATAACATGTCAGGTGGT+TGG - tig0024141:52597-52616 Msa1414750:CDS 35.0%
TGGAAGAAGAGTTGAGTGAT+CGG + tig0024141:49189-49208 None:intergenic 40.0%
GAATGGAAGAAAAGGTTCGA+AGG + tig0024141:49267-49286 None:intergenic 40.0%
GGAAAAGCGAATGGAAGAAA+AGG + tig0024141:49275-49294 None:intergenic 40.0%
GAAGTGATTGGAAAAGCGAA+TGG + tig0024141:49284-49303 None:intergenic 40.0%
ATTGAGAAAATCGGTACCTG+AGG + tig0024141:49314-49333 None:intergenic 40.0%
! AAATGCCGATGAGCTTTTCT+AGG - tig0024141:49433-49452 Msa1414750:CDS 40.0%
ACACTGAATGTAACCACATG+CGG + tig0024141:49517-49536 None:intergenic 40.0%
CAAGTTAGAATCTATTCCGG+AGG - tig0024141:49747-49766 Msa1414750:intron 40.0%
!! AGTAGAATCGATTTTGCCTC+CGG + tig0024141:49766-49785 None:intergenic 40.0%
! GCAGCTAGAATTGATTCTAG+AGG + tig0024141:49824-49843 None:intergenic 40.0%
! AATTCTAGCTGCTCTAAACG+TGG - tig0024141:49832-49851 Msa1414750:intron 40.0%
CTAAACGTGGAACCAAACAT+AGG - tig0024141:49845-49864 Msa1414750:intron 40.0%
! TGTATGTTTGGTTCCACTGT+TGG + tig0024141:50047-50066 None:intergenic 40.0%
TCTCCTTTCTCAAATGGCAT+AGG - tig0024141:50357-50376 Msa1414750:intron 40.0%
CTCCTTTCTCAAATGGCATA+GGG - tig0024141:50358-50377 Msa1414750:intron 40.0%
TGAAAACGCTGTAAAGCTCA+GGG + tig0024141:50434-50453 None:intergenic 40.0%
TTGAAAACGCTGTAAAGCTC+AGG + tig0024141:50435-50454 None:intergenic 40.0%
! TGAGCTTTACAGCGTTTTCA+AGG - tig0024141:50434-50453 Msa1414750:intron 40.0%
!! CAGCGTTTTCAAGGATTTGT+TGG - tig0024141:50443-50462 Msa1414750:intron 40.0%
! AAAAGTACGGAAGACAAAGC+TGG - tig0024141:50525-50544 Msa1414750:intron 40.0%
ATTTCGGACGCAAATTGATG+AGG + tig0024141:50781-50800 None:intergenic 40.0%
! TTCCAATATGCTGACTGTAG+TGG - tig0024141:50842-50861 Msa1414750:intron 40.0%
!! CTCTGCGTACCATTTTTGAT+CGG - tig0024141:51017-51036 Msa1414750:intron 40.0%
!! CCCAAAAGCATTCAAATAGG+TGG + tig0024141:51047-51066 None:intergenic 40.0%
!! AGGCCCAAAAGCATTCAAAT+AGG + tig0024141:51050-51069 None:intergenic 40.0%
!! TTTTAGAAACTTGCCCCCAT+TGG + tig0024141:51257-51276 None:intergenic 40.0%
!! GGGGCAAGTTTCTAAAACTA+TGG - tig0024141:51260-51279 Msa1414750:CDS 40.0%
TGGAAACATGACAGATAGTC+TGG - tig0024141:51280-51299 Msa1414750:CDS 40.0%
TGTGAAAGATCATGACCTTC+TGG - tig0024141:51358-51377 Msa1414750:CDS 40.0%
TCCAACTCACACTCTTCTAT+TGG - tig0024141:51425-51444 Msa1414750:intron 40.0%
! ACCAATAGAAGAGTGTGAGT+TGG + tig0024141:51429-51448 None:intergenic 40.0%
AGGCTTAGCACTGTAATCAA+TGG - tig0024141:51705-51724 Msa1414750:intron 40.0%
! TGGTTGTTGTTGTCGAAACA+GGG + tig0024141:51753-51772 None:intergenic 40.0%
! TTGGTTGTTGTTGTCGAAAC+AGG + tig0024141:51754-51773 None:intergenic 40.0%
GACAAATATCCCCACTTAGT+GGG + tig0024141:51784-51803 None:intergenic 40.0%
CAGCCAACGTAAAACTTTGT+TGG + tig0024141:51821-51840 None:intergenic 40.0%
TAAAAGGAGAGGGTTGTGTT+AGG + tig0024141:51850-51869 None:intergenic 40.0%
TCAAGGAGGAGTTTGAGAAA+GGG + tig0024141:51998-52017 None:intergenic 40.0%
TTCAAGGAGGAGTTTGAGAA+AGG + tig0024141:51999-52018 None:intergenic 40.0%
TGTAGAACTACTATCCCACA+TGG + tig0024141:52201-52220 None:intergenic 40.0%
CTGATCCTTTATCCTATCTG+GGG - tig0024141:52259-52278 Msa1414750:intron 40.0%
AGAAACCCCAGATAGGATAA+AGG + tig0024141:52267-52286 None:intergenic 40.0%
! TCACCAGCATTTTCAGCTTA+TGG + tig0024141:52543-52562 None:intergenic 40.0%
TCACTTGCAAGCACAAATAC+AGG - tig0024141:52660-52679 Msa1414750:five_prime_UTR 40.0%
GAAGATGAAGACGACGATGA+CGG - tig0024141:49144-49163 Msa1414750:three_prime_UTR 45.0%
AAGATGAAGACGACGATGAC+GGG - tig0024141:49145-49164 Msa1414750:three_prime_UTR 45.0%
AAGAAGAGTTGAGTGATCGG+AGG + tig0024141:49186-49205 None:intergenic 45.0%
AGAAAATCGGTACCTGAGGA+GGG + tig0024141:49310-49329 None:intergenic 45.0%
!! CTCTTCGACTCACTTTTAGC+CGG + tig0024141:49567-49586 None:intergenic 45.0%
GCTAAAAGTGAGTCGAAGAG+TGG - tig0024141:49567-49586 Msa1414750:intron 45.0%
AAATGTGGCTCATCCAACAG+TGG - tig0024141:50031-50050 Msa1414750:intron 45.0%
TGCAGGTCTCCTTTCTCAAA+TGG - tig0024141:50351-50370 Msa1414750:intron 45.0%
! CTCCCTATGCCATTTGAGAA+AGG + tig0024141:50363-50382 None:intergenic 45.0%
! AGCTCAGGGTCTTTTATGTC+AGG + tig0024141:50420-50439 None:intergenic 45.0%
GGAAGACAAAGCTGGTAAAG+AGG - tig0024141:50533-50552 Msa1414750:intron 45.0%
! GATGACAGCATTGGATTGAG+TGG - tig0024141:50633-50652 Msa1414750:CDS 45.0%
AGCCACTACAGTCAGCATAT+TGG + tig0024141:50847-50866 None:intergenic 45.0%
TGTCTCTAATGAATCGGACC+AGG + tig0024141:50896-50915 None:intergenic 45.0%
! GGTGGTGTACCGATCAAAAA+TGG + tig0024141:51029-51048 None:intergenic 45.0%
TTCCGCAGATAGTTCTCATC+AGG + tig0024141:51070-51089 None:intergenic 45.0%
TGAGAACTATCTGCGGAAGA+AGG - tig0024141:51072-51091 Msa1414750:intron 45.0%
AAAATGAGATGCAGTGGCCT+TGG - tig0024141:51130-51149 Msa1414750:CDS 45.0%
GTATGATACCTTTCCCCACT+CGG + tig0024141:51158-51177 None:intergenic 45.0%
!! GTTGCTTTCAAGTTGAAGCG+CGG - tig0024141:51302-51321 Msa1414750:CDS 45.0%
! ATCAGTAGGAGAGAGCGTAT+TGG - tig0024141:51519-51538 Msa1414750:intron 45.0%
AGGGGTTCAAATAACGAGAG+TGG + tig0024141:51734-51753 None:intergenic 45.0%
! GGTTGTTGTTGTCGAAACAG+GGG + tig0024141:51752-51771 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - tig0024141:51771-51790 Msa1414750:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - tig0024141:51772-51791 Msa1414750:intron 45.0%
TATCCCCACTTAGTGGGATA+AGG + tig0024141:51778-51797 None:intergenic 45.0%
GGACAAATATCCCCACTTAG+TGG + tig0024141:51785-51804 None:intergenic 45.0%
!! AAGTTTTACGTTGGCTGTCG+AGG - tig0024141:51824-51843 Msa1414750:intron 45.0%
TCGAAACGGGTAAAAGGAGA+GGG + tig0024141:51860-51879 None:intergenic 45.0%
GTTACGGTTCTTGGAACTTC+TGG - tig0024141:52294-52313 Msa1414750:intron 45.0%
ACAGGAGAAGACGAATCGAA+GGG + tig0024141:52425-52444 None:intergenic 45.0%
AACAGGAGAAGACGAATCGA+AGG + tig0024141:52426-52445 None:intergenic 45.0%
GTTGAGTGATCGGAGGAACA+AGG + tig0024141:49179-49198 None:intergenic 50.0%
AGAAAAGGTTCGAAGGGTGG+TGG + tig0024141:49260-49279 None:intergenic 50.0%
GGAAGAAAAGGTTCGAAGGG+TGG + tig0024141:49263-49282 None:intergenic 50.0%
TGAGGAGGGAGAGAAGTGAT+TGG + tig0024141:49296-49315 None:intergenic 50.0%
AATCACTTCTCTCCCTCCTC+AGG - tig0024141:49295-49314 Msa1414750:three_prime_UTR 50.0%
GAGAAAATCGGTACCTGAGG+AGG + tig0024141:49311-49330 None:intergenic 50.0%
GGAGTAATGAACACCGCATG+TGG - tig0024141:49501-49520 Msa1414750:intron 50.0%
AGGTTGTGACCAACGTGTTC+CGG - tig0024141:50553-50572 Msa1414750:intron 50.0%
ACCAAACTCCTCAACAGCCT+GGG + tig0024141:50583-50602 None:intergenic 50.0%
GGCCTGATGAGAACTATCTG+CGG - tig0024141:51065-51084 Msa1414750:intron 50.0%
GAACTATCTGCGGAAGAAGG+TGG - tig0024141:51075-51094 Msa1414750:intron 50.0%
AAGAAGGTGGAGCAGGAGTT+GGG - tig0024141:51088-51107 Msa1414750:intron 50.0%
AACGGCTTATGGCTGCCAAT+GGG - tig0024141:51239-51258 Msa1414750:CDS 50.0%
CCACTTAGTGGGATAAGGCT+TGG + tig0024141:51773-51792 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - tig0024141:51770-51789 Msa1414750:intron 50.0%
GTCGAAACGGGTAAAAGGAG+AGG + tig0024141:51861-51880 None:intergenic 50.0%
CTGCAACAGAAACCCCAGAT+AGG + tig0024141:52274-52293 None:intergenic 50.0%
! CTATCTGGGGTTTCTGTTGC+AGG - tig0024141:52272-52291 Msa1414750:intron 50.0%
GGGGTTTCTGTTGCAGGTTA+CGG - tig0024141:52278-52297 Msa1414750:intron 50.0%
CTGTTGCAGGTTACGGTTCT+TGG - tig0024141:52285-52304 Msa1414750:intron 50.0%
CTTGGAACTTCTGGACTTGC+AGG - tig0024141:52303-52322 Msa1414750:intron 50.0%
! AAAGGTTCGAAGGGTGGTGG+TGG + tig0024141:49257-49276 None:intergenic 55.0%
GGTTGTGACCAACGTGTTCC+GGG - tig0024141:50554-50573 Msa1414750:intron 55.0%
CACCAAACTCCTCAACAGCC+TGG + tig0024141:50584-50603 None:intergenic 55.0%
CAGGCTGTTGAGGAGTTTGG+TGG - tig0024141:50582-50601 Msa1414750:intron 55.0%
! CAGCATTGGATTGAGTGGCG+AGG - tig0024141:50638-50657 Msa1414750:CDS 55.0%
GAAGAAGGTGGAGCAGGAGT+TGG - tig0024141:51087-51106 Msa1414750:intron 55.0%
CATTGGCAGCCATAAGCCGT+TGG + tig0024141:51240-51259 None:intergenic 55.0%
CAACGGCTTATGGCTGCCAA+TGG - tig0024141:51238-51257 Msa1414750:CDS 55.0%
ACGGCTTATGGCTGCCAATG+GGG - tig0024141:51240-51259 Msa1414750:CDS 55.0%
!! TCGAAGGGTGGTGGTGGATG+CGG + tig0024141:49251-49270 None:intergenic 60.0%
GCCCAGGCTGTTGAGGAGTT+TGG - tig0024141:50579-50598 Msa1414750:intron 60.0%
TCTGCGGAAGAAGGTGGAGC+AGG - tig0024141:51081-51100 Msa1414750:intron 60.0%
! CAGTGGCCTTGGTTCCGAGT+GGG - tig0024141:51141-51160 Msa1414750:CDS 60.0%
! AGTGGCCTTGGTTCCGAGTG+GGG - tig0024141:51142-51161 Msa1414750:CDS 60.0%
CCTTTCCCCACTCGGAACCA+AGG + tig0024141:51150-51169 None:intergenic 60.0%
CCTTGGTTCCGAGTGGGGAA+AGG - tig0024141:51147-51166 Msa1414750:CDS 60.0%
CGGCTTATGGCTGCCAATGG+GGG - tig0024141:51241-51260 Msa1414750:CDS 60.0%
!! AAGGGTGGTGGTGGATGCGG+TGG + tig0024141:49248-49267 None:intergenic 65.0%
! GCAGTGGCCTTGGTTCCGAG+TGG - tig0024141:51140-51159 Msa1414750:CDS 65.0%
!! GGTGGTGGTGGATGCGGTGG+CGG + tig0024141:49245-49264 None:intergenic 70.0%
CTGGGCAGCCCGGAACACGT+TGG + tig0024141:50565-50584 None:intergenic 70.0%
CAACGTGTTCCGGGCTGCCC+AGG - tig0024141:50563-50582 Msa1414750:intron 70.0%
CCTCAACAGCCTGGGCAGCC+CGG + tig0024141:50575-50594 None:intergenic 70.0%
!! GGTGGTGGATGCGGTGGCGG+CGG + tig0024141:49242-49261 None:intergenic 75.0%
CCGGGCTGCCCAGGCTGTTG+AGG - tig0024141:50572-50591 Msa1414750:intron 75.0%
!! TGCGGTGGCGGCGGCGATGG+CGG + tig0024141:49233-49252 None:intergenic 80.0%
!! GGATGCGGTGGCGGCGGCGA+TGG + tig0024141:49236-49255 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
tig0024141 gene 48974 52794 48974 ID=Msa1414750;Name=Msa1414750
tig0024141 mRNA 48974 52794 48974 ID=Msa1414750-mRNA-1;Parent=Msa1414750;Name=Msa1414750-mRNA-1;_AED=0.08;_eAED=0.08;_QI=174|1|1|1|1|1|4|444|240
tig0024141 exon 48974 49474 48974 ID=Msa1414750-mRNA-1:exon:21971;Parent=Msa1414750-mRNA-1
tig0024141 exon 50600 50785 50600 ID=Msa1414750-mRNA-1:exon:21970;Parent=Msa1414750-mRNA-1
tig0024141 exon 51109 51419 51109 ID=Msa1414750-mRNA-1:exon:21969;Parent=Msa1414750-mRNA-1
tig0024141 exon 52452 52794 52452 ID=Msa1414750-mRNA-1:exon:21968;Parent=Msa1414750-mRNA-1
tig0024141 five_prime_UTR 52621 52794 52621 ID=Msa1414750-mRNA-1:five_prime_utr;Parent=Msa1414750-mRNA-1
tig0024141 CDS 52452 52620 52452 ID=Msa1414750-mRNA-1:cds;Parent=Msa1414750-mRNA-1
tig0024141 CDS 51109 51419 51109 ID=Msa1414750-mRNA-1:cds;Parent=Msa1414750-mRNA-1
tig0024141 CDS 50600 50785 50600 ID=Msa1414750-mRNA-1:cds;Parent=Msa1414750-mRNA-1
tig0024141 CDS 49418 49474 49418 ID=Msa1414750-mRNA-1:cds;Parent=Msa1414750-mRNA-1
tig0024141 three_prime_UTR 48974 49417 48974 ID=Msa1414750-mRNA-1:three_prime_utr;Parent=Msa1414750-mRNA-1
Gene Sequence

>Msa1414750

ATGAAGACGACGATGACGGGATTGAGATCCTTGTTCCTCCGATCACTCAACTCTTCTTCCAGATCTTATTCTTCTTCTTCTGCCGCCATCGCCGCCGCCACCGCATCCACCACCACCCTTCGAACCTTTTCTTCCATTCGCTTTTCCAATCACTTCTCTCCCTCCTCAGAATGCAGGTCTCCTTTCTCAAATGGCATAGGGAGCATGCGATTTTATAGTGAAGAAGTGACTCACATGCCTGACATAAAAGACCCTGAGCTTTACAGCGTTTTCAAGGATTTGTTGGCTGAAAATTGGAGTGAACTTTCGGATGCTGTCGTTTCTGATGCTAAACATGCATTGTCTAAAAGTACGGAAGACAAAGCTGGTAAAGAGGTTGTGACCAACGTGTTCCGGGCTGCCCAGGCTGTTGAGGAGTTTGGTGGCATTCTTAACACCTTGAAAATGGAAATTGATGACAGCATTGGATTGAGTGGCGAGGATGTAAAACCTTTGCCCAATCATATGCAAAATGCTCTGCGTACCATTTTTGATCGGTACACCACCTATTTGAATGCTTTTGGGCCTGATGAGAACTATCTGCGGAAGAAGGTGGAGCAGGAGTTGGGTACAAAGATGATACACTTAAAAATGAGATGCAGTGGCCTTGGTTCCGAGTGGGGAAAGGTTACGGTTCTTGGAACTTCTGGACTTGCAGGTTCATATGTCGAGCAAAGAGCATAG

Protein sequence

>Msa1414750

MKTTMTGLRSLFLRSLNSSSRSYSSSSAAIAAATASTTTLRTFSSIRFSNHFSPSSECRSPFSNGIGSMRFYSEEVTHMPDIKDPELYSVFKDLLAENWSELSDAVVSDAKHALSKSTEDKAGKEVVTNVFRAAQAVEEFGGILNTLKMEIDDSIGLSGEDVKPLPNHMQNALRTIFDRYTTYLNAFGPDENYLRKKVEQELGTKMIHLKMRCSGLGSEWGKVTVLGTSGLAGSYVEQRA*