AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1009000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009000 MtrunA17_Chr7g0219331 79.913 458 42 1 1 408 96 553 0.0 734
Msa1009000 MtrunA17_Chr7g0219331 91.803 61 5 0 1 61 1 61 2.61e-29 119
Msa1009000 MtrunA17_Chr7g0219301 79.075 454 45 1 2 405 4 457 0.0 718
Msa1009000 MtrunA17_Chr7g0219301 78.880 393 47 1 16 408 527 883 0.0 619
Msa1009000 MtrunA17_Chr6g0455341 41.880 468 198 12 2 408 8 462 7.68e-117 348
Msa1009000 MtrunA17_Chr6g0455361 40.948 464 203 11 3 408 9 459 7.73e-113 338
Msa1009000 MtrunA17_Chr6g0454761 40.909 462 203 10 3 408 9 456 1.83e-105 332
Msa1009000 MtrunA17_Chr6g0454761 39.565 460 213 9 3 408 496 944 7.47e-101 320
Msa1009000 MtrunA17_Chr7g0219311 93.878 147 9 0 245 391 1 147 1.64e-95 282
Msa1009000 MtrunA17_Chr7g0219181 35.504 476 230 11 3 408 9 477 5.64e-93 288
Msa1009000 MtrunA17_Chr7g0219351 65.438 217 25 1 72 238 15 231 1.92e-92 278
Msa1009000 MtrunA17_Chr7g0219341 86.842 152 20 0 257 408 1 152 3.57e-89 266
Msa1009000 MtrunA17_Chr6g0455351 36.052 466 191 12 3 408 9 427 2.76e-87 271
Msa1009000 MtrunA17_Chr7g0219241 36.920 474 219 15 3 406 10 473 4.20e-85 267
Msa1009000 MtrunA17_Chr7g0219291 35.881 471 227 14 3 408 357 817 3.22e-80 263
Msa1009000 MtrunA17_Chr7g0219291 36.620 284 168 9 117 392 35 314 1.02e-40 154
Msa1009000 MtrunA17_Chr7g0219101 34.878 410 230 11 27 407 30 431 1.32e-73 236
Msa1009000 MtrunA17_Chr2g0323511 33.615 473 230 12 3 402 17 478 1.22e-67 222
Msa1009000 MtrunA17_Chr7g0219121 31.677 483 237 16 3 406 9 477 8.50e-62 207
Msa1009000 MtrunA17_Chr2g0323471 33.034 445 222 12 22 402 41 473 5.18e-60 202
Msa1009000 MtrunA17_Chr3g0087901 29.764 467 254 11 3 406 9 464 1.01e-56 193
Msa1009000 MtrunA17_Chr7g0219881 30.882 476 228 15 3 402 6 456 5.50e-56 191
Msa1009000 MtrunA17_Chr8g0339641 30.977 481 243 15 3 406 4 472 2.20e-55 189
Msa1009000 MtrunA17_Chr2g0323481 30.068 439 224 11 39 408 39 463 1.35e-52 182
Msa1009000 MtrunA17_Chr3g0083761 27.837 467 255 11 3 402 6 457 8.99e-51 177
Msa1009000 MtrunA17_Chr2g0323501 28.539 445 252 10 26 408 37 477 9.93e-50 175
Msa1009000 MtrunA17_Chr3g0124341 30.297 472 252 15 3 406 10 472 6.34e-48 170
Msa1009000 MtrunA17_Chr7g0219211 34.657 277 112 7 3 217 10 279 6.06e-39 142
Msa1009000 MtrunA17_Chr2g0323421 26.096 479 258 15 3 408 56 511 6.90e-32 126
Msa1009000 MtrunA17_Chr7g0219191 38.308 201 68 6 22 169 15 212 1.79e-30 117
Msa1009000 MtrunA17_Chr2g0323441 46.575 146 69 5 1 142 1 141 2.77e-30 115
Msa1009000 MtrunA17_Chr7g0219221 38.816 152 90 3 257 406 8 158 1.34e-29 112
Msa1009000 MtrunA17_Chr7g0219201 39.344 183 106 4 230 407 21 203 1.44e-29 114
Msa1009000 MtrunA17_Chr7g0219251 39.860 143 74 3 3 142 8 141 8.98e-25 100
Msa1009000 MtrunA17_Chr3g0092011 46.429 112 57 1 3 114 4 112 2.83e-21 92.8
Msa1009000 MtrunA17_Chr6g0454741 31.707 164 58 3 76 189 25 184 9.66e-20 87.8
Msa1009000 MtrunA17_Chr6g0454741 54.667 75 33 1 310 383 161 235 3.90e-14 71.6
Msa1009000 MtrunA17_Chr3g0087401 26.730 318 173 12 95 383 141 427 1.58e-14 75.1
Msa1009000 MtrunA17_Chr4g0053111 27.473 273 158 13 111 377 171 409 8.89e-14 72.8
Msa1009000 MtrunA17_Chr3g0087221 26.766 269 161 12 110 363 156 403 1.59e-13 72.0
Msa1009000 MtrunA17_Chr8g0386141 23.735 257 165 9 108 360 154 383 8.13e-11 63.5
Msa1009000 MtrunA17_Chr3g0132001 24.917 301 182 11 113 403 167 433 8.52e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1009000 AT5G39090.1 33.843 458 229 13 5 406 8 447 6.58e-69 224
Msa1009000 AT3G29635.1 34.685 444 213 13 24 406 27 454 8.44e-67 219
Msa1009000 AT3G29670.1 33.691 466 229 13 4 408 5 451 8.59e-67 219
Msa1009000 AT5G61160.1 32.766 470 231 13 3 408 4 452 6.41e-66 217
Msa1009000 AT5G39050.1 32.979 470 236 13 3 406 11 467 8.72e-66 217
Msa1009000 AT5G39080.1 31.613 465 238 13 4 402 7 457 3.21e-64 213
Msa1009000 AT3G29680.1 32.653 441 215 13 24 402 23 443 4.41e-60 202
Msa1009000 AT3G29590.1 33.546 471 213 16 4 406 10 448 1.45e-57 195
Msa1009000 AT1G03940.1 31.303 476 235 15 3 406 9 464 3.79e-57 194
Msa1009000 AT1G03495.1 30.595 353 161 12 4 290 10 344 1.60e-34 131
Msa1009000 AT3G29690.1 34.459 148 85 4 262 405 38 177 6.48e-18 81.6
Msa1009000 AT5G41040.2 25.197 254 161 9 110 359 166 394 4.85e-11 64.7
Msa1009000 AT5G41040.1 25.197 254 161 9 110 359 182 410 5.80e-11 64.3

Find 67 sgRNAs with CRISPR-Local

Find 196 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCGACTCCTGCAACATATTT+TGG 0.089197 7_1:-9767489 Msa1009000:CDS
GCTGATTTCAATCATCTTTC+AGG 0.150127 7_1:-9768124 Msa1009000:intron
ATTGAAAATTTCTATGATTT+TGG 0.163660 7_1:+9768441 None:intergenic
TGTTGAAACAAGTGAGTTAT+TGG 0.246021 7_1:-9767439 Msa1009000:CDS
GAAACCATTTCAACTTTCTT+TGG 0.269632 7_1:+9767222 None:intergenic
TTACTTTCTTTGACATACTA+TGG 0.279036 7_1:-9768369 Msa1009000:CDS
GTACTATAAACCTCAAATTT+AGG 0.281913 7_1:+9767264 None:intergenic
AACCAACAATAGAAGCTTAA+TGG 0.299594 7_1:-9767763 Msa1009000:CDS
GTTATTTCAATTATCTCGTT+TGG 0.307673 7_1:-9767703 Msa1009000:CDS
GTTGAAACAAGTGAGTTATT+GGG 0.310202 7_1:-9767438 Msa1009000:CDS
AGGCAAAATATTTGAGTGAT+TGG 0.326856 7_1:-9767800 Msa1009000:CDS
ACAATAGAAGCTTAATGGTT+TGG 0.327026 7_1:-9767758 Msa1009000:CDS
GTTCCAGAAGATTCATTTAG+AGG 0.333102 7_1:-9767726 Msa1009000:CDS
AACCATTAAGCTTCTATTGT+TGG 0.335300 7_1:+9767761 None:intergenic
TTTGGATATCGAAAAGCTTA+AGG 0.345008 7_1:-9767685 Msa1009000:CDS
CAATAGAAGCTTAATGGTTT+GGG 0.346870 7_1:-9767757 Msa1009000:CDS
TGTCTTTCTGATTGTAGAAA+TGG 0.347109 7_1:-9767177 Msa1009000:CDS
GAGGTTTATAGTACTGATTT+TGG 0.352559 7_1:-9767255 Msa1009000:CDS
AACCCTCTAAATGAATCTTC+TGG 0.355233 7_1:+9767723 None:intergenic
TTGTATCCATAGCTTATGCC+TGG 0.358494 7_1:-9767596 Msa1009000:CDS
TAGAAGAAAATTCTTTGAAC+AGG 0.373178 7_1:+9768334 None:intergenic
TGCTGGTTCACCTAAATTTG+AGG 0.384622 7_1:-9767274 Msa1009000:CDS
CAAGGATCCAAATGAATTAG+AGG 0.386216 7_1:-9767820 Msa1009000:CDS
TGAAGTGTTAAGTGAAGCTT+TGG 0.391195 7_1:-9767391 Msa1009000:CDS
ATTTCTGATGTTAAAGCAAT+TGG 0.393974 7_1:-9767300 Msa1009000:CDS
ATTTGTAGTGTCAAAGCAAA+AGG 0.403561 7_1:-9767661 Msa1009000:CDS
CAATTTCCAAAATATGTTGC+AGG 0.404618 7_1:+9767483 None:intergenic
CCTTTGATGAATTTAATGAT+TGG 0.405006 7_1:+9768181 None:intergenic
TTAAAAGATGGAGTGTTGAA+TGG 0.421534 7_1:-9767363 Msa1009000:CDS
AAAACCAAAGAAAGTTGAAA+TGG 0.434697 7_1:-9767226 Msa1009000:CDS
TTGCTTCGCTCTTTGTCAAA+GGG 0.440215 7_1:-9767104 Msa1009000:CDS
AATGGTGATGGTGTTGAGAT+AGG 0.443549 7_1:-9767159 Msa1009000:CDS
AGTATGTCAAAGAAAGTAAG+AGG 0.444791 7_1:+9768373 None:intergenic
GCTTTGGAAACTTTAAAAGA+TGG 0.454178 7_1:-9767375 Msa1009000:CDS
TTTGCTTCGCTCTTTGTCAA+AGG 0.460307 7_1:-9767105 Msa1009000:CDS
TTGAAACAAGTGAGTTATTG+GGG 0.479171 7_1:-9767437 Msa1009000:CDS
CCAAAATATGTTGCAGGAGT+CGG 0.485029 7_1:+9767489 None:intergenic
ATGGTTTCTATAGATAGAAC+TGG 0.490163 7_1:-9767207 Msa1009000:CDS
GTTAAAGCAATTGGTGCTGC+TGG 0.491334 7_1:-9767291 Msa1009000:CDS
TGTCAAAGCAAAAGGGTACT+AGG 0.499646 7_1:-9767653 Msa1009000:CDS
AAGAAAATTCTTTGAACAGG+TGG 0.502827 7_1:+9768337 None:intergenic
CCTATGTAGAAATCTTGAAA+AGG 0.507641 7_1:-9767913 Msa1009000:CDS
GGTAGTTCTTCTTGTGAAGA+TGG 0.511257 7_1:+9768412 None:intergenic
AGCTTTCATTCTGCATACCC+AGG 0.512729 7_1:+9767578 None:intergenic
TTCCAGAAGATTCATTTAGA+GGG 0.521713 7_1:-9767725 Msa1009000:CDS
TGGCTTTGAATATTGATTGT+CGG 0.525216 7_1:-9767527 Msa1009000:CDS
GTTTGGGAAGAAGGGTGTTG+AGG 0.530313 7_1:+9768284 None:intergenic
TCTACAATCAGAAAGACAAA+AGG 0.534606 7_1:+9767182 None:intergenic
GCATACCCAGGCATAAGCTA+TGG 0.548203 7_1:+9767590 None:intergenic
TGTATCCATAGCTTATGCCT+GGG 0.550290 7_1:-9767595 Msa1009000:CDS
AAGGGTGTTGAGGAAGAGTG+AGG 0.553924 7_1:+9768294 None:intergenic
AGAGGAAGTGATGTATCTGA+AGG 0.556506 7_1:+9768391 None:intergenic
CCAATCATTAAATTCATCAA+AGG 0.568697 7_1:-9768181 Msa1009000:CDS
TTTGTAGTGTCAAAGCAAAA+GGG 0.581463 7_1:-9767660 Msa1009000:CDS
AGGAAGAGTGAGGCTTGGTG+TGG 0.588661 7_1:+9768304 None:intergenic
CAAATGAGATGACCCAAAAG+AGG 0.588902 7_1:+9768223 None:intergenic
TGTTGAGGAAGAGTGAGGCT+TGG 0.589306 7_1:+9768299 None:intergenic
TTGAGTGATTGGTCAAAGCA+AGG 0.594084 7_1:-9767789 Msa1009000:CDS
ATCAGCATCAGATTCAGCTA+TGG 0.602424 7_1:+9768141 None:intergenic
TCTGATTGTAGAAATGGTGA+TGG 0.615354 7_1:-9767171 Msa1009000:CDS
AAATATGTTGCAGGAGTCGG+TGG 0.620986 7_1:+9767492 None:intergenic
GGAAGAGTGAGGCTTGGTGT+GGG 0.646190 7_1:+9768305 None:intergenic
TAGAAAGGACAAAACTCATG+TGG 0.652604 7_1:+9767858 None:intergenic
AGTGATTGGTCAAAGCAAGG+TGG 0.675947 7_1:-9767786 Msa1009000:CDS
TGAAACAAGTGAGTTATTGG+GGG 0.676029 7_1:-9767436 Msa1009000:CDS
ATTGGCTTGTGAGAATCATG+AGG 0.731339 7_1:+9768199 None:intergenic
GGAAGATGGACTAATCGTGG+CGG 0.752782 7_1:-9767415 Msa1009000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGAAAATTTCTATGATTT+TGG + chr7_1:9767099-9767118 None:intergenic 15.0%
!!! ATTATTTTTCTATCATAGAA+AGG + chr7_1:9767697-9767716 None:intergenic 15.0%
!!! ATTGAAAATTTCTATGATTT+TGG + chr7_1:9767099-9767118 None:intergenic 15.0%
!!! ATTATTTTTCTATCATAGAA+AGG + chr7_1:9767697-9767716 None:intergenic 15.0%
!!! GAAAGTGATTTTTTTAGTTT+GGG + chr7_1:9767272-9767291 None:intergenic 20.0%
!!! TGAAAGTGATTTTTTTAGTT+TGG + chr7_1:9767273-9767292 None:intergenic 20.0%
!!! TTTTCATTTTTATCCTCTTT+TGG - chr7_1:9767301-9767320 Msa1009000:CDS 20.0%
!!! TTTCATTTTTATCCTCTTTT+GGG - chr7_1:9767302-9767321 Msa1009000:CDS 20.0%
!!! AACTTCTTTTATCAAATCTT+GGG - chr7_1:9767597-9767616 Msa1009000:CDS 20.0%
!! CTATGATAGAAAAATAATCA+AGG - chr7_1:9767699-9767718 Msa1009000:CDS 20.0%
!!! GAAAGTGATTTTTTTAGTTT+GGG + chr7_1:9767272-9767291 None:intergenic 20.0%
!!! TGAAAGTGATTTTTTTAGTT+TGG + chr7_1:9767273-9767292 None:intergenic 20.0%
!!! TTTTCATTTTTATCCTCTTT+TGG - chr7_1:9767301-9767320 Msa1009000:CDS 20.0%
!!! TTTCATTTTTATCCTCTTTT+GGG - chr7_1:9767302-9767321 Msa1009000:CDS 20.0%
!!! AACTTCTTTTATCAAATCTT+GGG - chr7_1:9767597-9767616 Msa1009000:CDS 20.0%
!! CTATGATAGAAAAATAATCA+AGG - chr7_1:9767699-9767718 Msa1009000:CDS 20.0%
! TTACTTTCTTTGACATACTA+TGG - chr7_1:9767168-9767187 Msa1009000:CDS 25.0%
! TAGAAGAAAATTCTTTGAAC+AGG + chr7_1:9767206-9767225 None:intergenic 25.0%
!!! TTTTTTTAGTTTGGGAAGAA+GGG + chr7_1:9767264-9767283 None:intergenic 25.0%
!!! ATTTTTTTAGTTTGGGAAGA+AGG + chr7_1:9767265-9767284 None:intergenic 25.0%
! CCTTTGATGAATTTAATGAT+TGG + chr7_1:9767359-9767378 None:intergenic 25.0%
! CCAATCATTAAATTCATCAA+AGG - chr7_1:9767356-9767375 Msa1009000:CDS 25.0%
!! TCATGAGAAATATTCAAGTT+AGG + chr7_1:9767479-9767498 None:intergenic 25.0%
! AAAATCCATAGTTTGGAAAA+AGG + chr7_1:9767531-9767550 None:intergenic 25.0%
!! CAACTTCTTTTATCAAATCT+TGG - chr7_1:9767596-9767615 Msa1009000:CDS 25.0%
!! TATTTTGCCTCTAATTCATT+TGG + chr7_1:9767727-9767746 None:intergenic 25.0%
!! GTTATTTCAATTATCTCGTT+TGG - chr7_1:9767834-9767853 Msa1009000:CDS 25.0%
!!! TATTTTGGAAATTGTATTGC+AGG - chr7_1:9768063-9768082 Msa1009000:intron 25.0%
!! AATTTTTGTTCATCGTTACT+TGG - chr7_1:9768204-9768223 Msa1009000:CDS 25.0%
! ATTTCTGATGTTAAAGCAAT+TGG - chr7_1:9768237-9768256 Msa1009000:CDS 25.0%
! GTACTATAAACCTCAAATTT+AGG + chr7_1:9768276-9768295 None:intergenic 25.0%
! AAAACCAAAGAAAGTTGAAA+TGG - chr7_1:9768311-9768330 Msa1009000:CDS 25.0%
! TTACTTTCTTTGACATACTA+TGG - chr7_1:9767168-9767187 Msa1009000:CDS 25.0%
! TAGAAGAAAATTCTTTGAAC+AGG + chr7_1:9767206-9767225 None:intergenic 25.0%
!!! TTTTTTTAGTTTGGGAAGAA+GGG + chr7_1:9767264-9767283 None:intergenic 25.0%
!!! ATTTTTTTAGTTTGGGAAGA+AGG + chr7_1:9767265-9767284 None:intergenic 25.0%
! CCTTTGATGAATTTAATGAT+TGG + chr7_1:9767359-9767378 None:intergenic 25.0%
! CCAATCATTAAATTCATCAA+AGG - chr7_1:9767356-9767375 Msa1009000:CDS 25.0%
!! TCATGAGAAATATTCAAGTT+AGG + chr7_1:9767479-9767498 None:intergenic 25.0%
! AAAATCCATAGTTTGGAAAA+AGG + chr7_1:9767531-9767550 None:intergenic 25.0%
!! CAACTTCTTTTATCAAATCT+TGG - chr7_1:9767596-9767615 Msa1009000:CDS 25.0%
!! TATTTTGCCTCTAATTCATT+TGG + chr7_1:9767727-9767746 None:intergenic 25.0%
!! GTTATTTCAATTATCTCGTT+TGG - chr7_1:9767834-9767853 Msa1009000:CDS 25.0%
!!! TATTTTGGAAATTGTATTGC+AGG - chr7_1:9768063-9768082 Msa1009000:intron 25.0%
!! AATTTTTGTTCATCGTTACT+TGG - chr7_1:9768204-9768223 Msa1009000:CDS 25.0%
! ATTTCTGATGTTAAAGCAAT+TGG - chr7_1:9768237-9768256 Msa1009000:CDS 25.0%
! GTACTATAAACCTCAAATTT+AGG + chr7_1:9768276-9768295 None:intergenic 25.0%
! AAAACCAAAGAAAGTTGAAA+TGG - chr7_1:9768311-9768330 Msa1009000:CDS 25.0%
AGTATGTCAAAGAAAGTAAG+AGG + chr7_1:9767167-9767186 None:intergenic 30.0%
AAGAAAATTCTTTGAACAGG+TGG + chr7_1:9767203-9767222 None:intergenic 30.0%
! AGTAACCTTTTTCCAAACTA+TGG - chr7_1:9767523-9767542 Msa1009000:CDS 30.0%
CCAATTGAAAATCCATAGTT+TGG + chr7_1:9767538-9767557 None:intergenic 30.0%
! CCAAACTATGGATTTTCAAT+TGG - chr7_1:9767535-9767554 Msa1009000:CDS 30.0%
!! CCTTTTCAAGATTTCTACAT+AGG + chr7_1:9767627-9767646 None:intergenic 30.0%
CCTATGTAGAAATCTTGAAA+AGG - chr7_1:9767624-9767643 Msa1009000:CDS 30.0%
AACTCATGTGGCAAAAAAAT+GGG + chr7_1:9767670-9767689 None:intergenic 30.0%
AAACTCATGTGGCAAAAAAA+TGG + chr7_1:9767671-9767690 None:intergenic 30.0%
AGGCAAAATATTTGAGTGAT+TGG - chr7_1:9767737-9767756 Msa1009000:CDS 30.0%
AACCAACAATAGAAGCTTAA+TGG - chr7_1:9767774-9767793 Msa1009000:CDS 30.0%
AACCATTAAGCTTCTATTGT+TGG + chr7_1:9767779-9767798 None:intergenic 30.0%
ACAATAGAAGCTTAATGGTT+TGG - chr7_1:9767779-9767798 Msa1009000:CDS 30.0%
CAATAGAAGCTTAATGGTTT+GGG - chr7_1:9767780-9767799 Msa1009000:CDS 30.0%
TTCCAGAAGATTCATTTAGA+GGG - chr7_1:9767812-9767831 Msa1009000:CDS 30.0%
TTTGGATATCGAAAAGCTTA+AGG - chr7_1:9767852-9767871 Msa1009000:CDS 30.0%
ATTTGTAGTGTCAAAGCAAA+AGG - chr7_1:9767876-9767895 Msa1009000:CDS 30.0%
TTTGTAGTGTCAAAGCAAAA+GGG - chr7_1:9767877-9767896 Msa1009000:CDS 30.0%
TAAGAACAAAAATGCTCTGA+TGG - chr7_1:9767990-9768009 Msa1009000:intron 30.0%
!! TGGCTTTGAATATTGATTGT+CGG - chr7_1:9768010-9768029 Msa1009000:intron 30.0%
CAATTTCCAAAATATGTTGC+AGG + chr7_1:9768057-9768076 None:intergenic 30.0%
TGTTGAAACAAGTGAGTTAT+TGG - chr7_1:9768098-9768117 Msa1009000:intron 30.0%
GTTGAAACAAGTGAGTTATT+GGG - chr7_1:9768099-9768118 Msa1009000:intron 30.0%
TTGAAACAAGTGAGTTATTG+GGG - chr7_1:9768100-9768119 Msa1009000:intron 30.0%
!! GCTTTGGAAACTTTAAAAGA+TGG - chr7_1:9768162-9768181 Msa1009000:CDS 30.0%
!! TTAAAAGATGGAGTGTTGAA+TGG - chr7_1:9768174-9768193 Msa1009000:CDS 30.0%
!!! GAGGTTTATAGTACTGATTT+TGG - chr7_1:9768282-9768301 Msa1009000:CDS 30.0%
!!! TATAGTACTGATTTTGGTTG+TGG - chr7_1:9768288-9768307 Msa1009000:CDS 30.0%
GAAACCATTTCAACTTTCTT+TGG + chr7_1:9768318-9768337 None:intergenic 30.0%
ATGGTTTCTATAGATAGAAC+TGG - chr7_1:9768330-9768349 Msa1009000:CDS 30.0%
TCTACAATCAGAAAGACAAA+AGG + chr7_1:9768358-9768377 None:intergenic 30.0%
TGTCTTTCTGATTGTAGAAA+TGG - chr7_1:9768360-9768379 Msa1009000:CDS 30.0%
TGTGTCTAACAAAAAAGCAA+TGG - chr7_1:9768404-9768423 Msa1009000:CDS 30.0%
AGTATGTCAAAGAAAGTAAG+AGG + chr7_1:9767167-9767186 None:intergenic 30.0%
AAGAAAATTCTTTGAACAGG+TGG + chr7_1:9767203-9767222 None:intergenic 30.0%
! AGTAACCTTTTTCCAAACTA+TGG - chr7_1:9767523-9767542 Msa1009000:CDS 30.0%
CCAATTGAAAATCCATAGTT+TGG + chr7_1:9767538-9767557 None:intergenic 30.0%
! CCAAACTATGGATTTTCAAT+TGG - chr7_1:9767535-9767554 Msa1009000:CDS 30.0%
!! CCTTTTCAAGATTTCTACAT+AGG + chr7_1:9767627-9767646 None:intergenic 30.0%
CCTATGTAGAAATCTTGAAA+AGG - chr7_1:9767624-9767643 Msa1009000:CDS 30.0%
AACTCATGTGGCAAAAAAAT+GGG + chr7_1:9767670-9767689 None:intergenic 30.0%
AAACTCATGTGGCAAAAAAA+TGG + chr7_1:9767671-9767690 None:intergenic 30.0%
AGGCAAAATATTTGAGTGAT+TGG - chr7_1:9767737-9767756 Msa1009000:CDS 30.0%
AACCAACAATAGAAGCTTAA+TGG - chr7_1:9767774-9767793 Msa1009000:CDS 30.0%
AACCATTAAGCTTCTATTGT+TGG + chr7_1:9767779-9767798 None:intergenic 30.0%
ACAATAGAAGCTTAATGGTT+TGG - chr7_1:9767779-9767798 Msa1009000:CDS 30.0%
CAATAGAAGCTTAATGGTTT+GGG - chr7_1:9767780-9767799 Msa1009000:CDS 30.0%
TTCCAGAAGATTCATTTAGA+GGG - chr7_1:9767812-9767831 Msa1009000:CDS 30.0%
TTTGGATATCGAAAAGCTTA+AGG - chr7_1:9767852-9767871 Msa1009000:CDS 30.0%
ATTTGTAGTGTCAAAGCAAA+AGG - chr7_1:9767876-9767895 Msa1009000:CDS 30.0%
TTTGTAGTGTCAAAGCAAAA+GGG - chr7_1:9767877-9767896 Msa1009000:CDS 30.0%
TAAGAACAAAAATGCTCTGA+TGG - chr7_1:9767990-9768009 Msa1009000:intron 30.0%
!! TGGCTTTGAATATTGATTGT+CGG - chr7_1:9768010-9768029 Msa1009000:intron 30.0%
CAATTTCCAAAATATGTTGC+AGG + chr7_1:9768057-9768076 None:intergenic 30.0%
TGTTGAAACAAGTGAGTTAT+TGG - chr7_1:9768098-9768117 Msa1009000:intron 30.0%
GTTGAAACAAGTGAGTTATT+GGG - chr7_1:9768099-9768118 Msa1009000:intron 30.0%
TTGAAACAAGTGAGTTATTG+GGG - chr7_1:9768100-9768119 Msa1009000:intron 30.0%
!! GCTTTGGAAACTTTAAAAGA+TGG - chr7_1:9768162-9768181 Msa1009000:CDS 30.0%
!! TTAAAAGATGGAGTGTTGAA+TGG - chr7_1:9768174-9768193 Msa1009000:CDS 30.0%
!!! GAGGTTTATAGTACTGATTT+TGG - chr7_1:9768282-9768301 Msa1009000:CDS 30.0%
!!! TATAGTACTGATTTTGGTTG+TGG - chr7_1:9768288-9768307 Msa1009000:CDS 30.0%
GAAACCATTTCAACTTTCTT+TGG + chr7_1:9768318-9768337 None:intergenic 30.0%
ATGGTTTCTATAGATAGAAC+TGG - chr7_1:9768330-9768349 Msa1009000:CDS 30.0%
TCTACAATCAGAAAGACAAA+AGG + chr7_1:9768358-9768377 None:intergenic 30.0%
TGTCTTTCTGATTGTAGAAA+TGG - chr7_1:9768360-9768379 Msa1009000:CDS 30.0%
TGTGTCTAACAAAAAAGCAA+TGG - chr7_1:9768404-9768423 Msa1009000:CDS 30.0%
! GCTGATTTCAATCATCTTTC+AGG - chr7_1:9767413-9767432 Msa1009000:CDS 35.0%
GTATTTGTGTAGCTTCAGAA+AGG + chr7_1:9767445-9767464 None:intergenic 35.0%
! TCATGATCAAGCTTCTGTTT+TGG - chr7_1:9767493-9767512 Msa1009000:CDS 35.0%
!!! TCACATCATGCTGTTTTAGA+TGG - chr7_1:9767565-9767584 Msa1009000:CDS 35.0%
TAGAAAGGACAAAACTCATG+TGG + chr7_1:9767682-9767701 None:intergenic 35.0%
CAAGGATCCAAATGAATTAG+AGG - chr7_1:9767717-9767736 Msa1009000:CDS 35.0%
GTTCCAGAAGATTCATTTAG+AGG - chr7_1:9767811-9767830 Msa1009000:CDS 35.0%
AACCCTCTAAATGAATCTTC+TGG + chr7_1:9767817-9767836 None:intergenic 35.0%
TGAAACAAGTGAGTTATTGG+GGG - chr7_1:9768101-9768120 Msa1009000:intron 35.0%
! TGAAGTGTTAAGTGAAGCTT+TGG - chr7_1:9768146-9768165 Msa1009000:CDS 35.0%
! TTTTGTTCATCGTTACTTGG+CGG - chr7_1:9768207-9768226 Msa1009000:CDS 35.0%
TCTGATTGTAGAAATGGTGA+TGG - chr7_1:9768366-9768385 Msa1009000:CDS 35.0%
! GCTGATTTCAATCATCTTTC+AGG - chr7_1:9767413-9767432 Msa1009000:CDS 35.0%
GTATTTGTGTAGCTTCAGAA+AGG + chr7_1:9767445-9767464 None:intergenic 35.0%
! TCATGATCAAGCTTCTGTTT+TGG - chr7_1:9767493-9767512 Msa1009000:CDS 35.0%
!!! TCACATCATGCTGTTTTAGA+TGG - chr7_1:9767565-9767584 Msa1009000:CDS 35.0%
TAGAAAGGACAAAACTCATG+TGG + chr7_1:9767682-9767701 None:intergenic 35.0%
CAAGGATCCAAATGAATTAG+AGG - chr7_1:9767717-9767736 Msa1009000:CDS 35.0%
GTTCCAGAAGATTCATTTAG+AGG - chr7_1:9767811-9767830 Msa1009000:CDS 35.0%
AACCCTCTAAATGAATCTTC+TGG + chr7_1:9767817-9767836 None:intergenic 35.0%
TGAAACAAGTGAGTTATTGG+GGG - chr7_1:9768101-9768120 Msa1009000:intron 35.0%
! TGAAGTGTTAAGTGAAGCTT+TGG - chr7_1:9768146-9768165 Msa1009000:CDS 35.0%
! TTTTGTTCATCGTTACTTGG+CGG - chr7_1:9768207-9768226 Msa1009000:CDS 35.0%
TCTGATTGTAGAAATGGTGA+TGG - chr7_1:9768366-9768385 Msa1009000:CDS 35.0%
GGTAGTTCTTCTTGTGAAGA+TGG + chr7_1:9767128-9767147 None:intergenic 40.0%
AGAGGAAGTGATGTATCTGA+AGG + chr7_1:9767149-9767168 None:intergenic 40.0%
CAAATGAGATGACCCAAAAG+AGG + chr7_1:9767317-9767336 None:intergenic 40.0%
!! CTCTTTTGGGTCATCTCATT+TGG - chr7_1:9767315-9767334 Msa1009000:CDS 40.0%
!! ATTGGCTTGTGAGAATCATG+AGG + chr7_1:9767341-9767360 None:intergenic 40.0%
ATCAGCATCAGATTCAGCTA+TGG + chr7_1:9767399-9767418 None:intergenic 40.0%
! TTGAGTGATTGGTCAAAGCA+AGG - chr7_1:9767748-9767767 Msa1009000:CDS 40.0%
!! TGTCAAAGCAAAAGGGTACT+AGG - chr7_1:9767884-9767903 Msa1009000:CDS 40.0%
TTGTATCCATAGCTTATGCC+TGG - chr7_1:9767941-9767960 Msa1009000:CDS 40.0%
TGTATCCATAGCTTATGCCT+GGG - chr7_1:9767942-9767961 Msa1009000:CDS 40.0%
CCAAAATATGTTGCAGGAGT+CGG + chr7_1:9768051-9768070 None:intergenic 40.0%
!! TGCTGGTTCACCTAAATTTG+AGG - chr7_1:9768263-9768282 Msa1009000:CDS 40.0%
!! AATGGTGATGGTGTTGAGAT+AGG - chr7_1:9768378-9768397 Msa1009000:CDS 40.0%
TTTGCTTCGCTCTTTGTCAA+AGG - chr7_1:9768432-9768451 Msa1009000:CDS 40.0%
TTGCTTCGCTCTTTGTCAAA+GGG - chr7_1:9768433-9768452 Msa1009000:CDS 40.0%
GGTAGTTCTTCTTGTGAAGA+TGG + chr7_1:9767128-9767147 None:intergenic 40.0%
AGAGGAAGTGATGTATCTGA+AGG + chr7_1:9767149-9767168 None:intergenic 40.0%
CAAATGAGATGACCCAAAAG+AGG + chr7_1:9767317-9767336 None:intergenic 40.0%
!! CTCTTTTGGGTCATCTCATT+TGG - chr7_1:9767315-9767334 Msa1009000:CDS 40.0%
!! ATTGGCTTGTGAGAATCATG+AGG + chr7_1:9767341-9767360 None:intergenic 40.0%
ATCAGCATCAGATTCAGCTA+TGG + chr7_1:9767399-9767418 None:intergenic 40.0%
! TTGAGTGATTGGTCAAAGCA+AGG - chr7_1:9767748-9767767 Msa1009000:CDS 40.0%
!! TGTCAAAGCAAAAGGGTACT+AGG - chr7_1:9767884-9767903 Msa1009000:CDS 40.0%
TTGTATCCATAGCTTATGCC+TGG - chr7_1:9767941-9767960 Msa1009000:CDS 40.0%
TGTATCCATAGCTTATGCCT+GGG - chr7_1:9767942-9767961 Msa1009000:CDS 40.0%
CCAAAATATGTTGCAGGAGT+CGG + chr7_1:9768051-9768070 None:intergenic 40.0%
!! TGCTGGTTCACCTAAATTTG+AGG - chr7_1:9768263-9768282 Msa1009000:CDS 40.0%
!! AATGGTGATGGTGTTGAGAT+AGG - chr7_1:9768378-9768397 Msa1009000:CDS 40.0%
TTTGCTTCGCTCTTTGTCAA+AGG - chr7_1:9768432-9768451 Msa1009000:CDS 40.0%
TTGCTTCGCTCTTTGTCAAA+GGG - chr7_1:9768433-9768452 Msa1009000:CDS 40.0%
! AGTGATTGGTCAAAGCAAGG+TGG - chr7_1:9767751-9767770 Msa1009000:CDS 45.0%
AGCTTTCATTCTGCATACCC+AGG + chr7_1:9767962-9767981 None:intergenic 45.0%
AAATATGTTGCAGGAGTCGG+TGG + chr7_1:9768048-9768067 None:intergenic 45.0%
! CCGACTCCTGCAACATATTT+TGG - chr7_1:9768048-9768067 Msa1009000:intron 45.0%
AGTGAGTTATTGGGGGAAGA+TGG - chr7_1:9768108-9768127 Msa1009000:intron 45.0%
!! GTTAAAGCAATTGGTGCTGC+TGG - chr7_1:9768246-9768265 Msa1009000:CDS 45.0%
! AGTGATTGGTCAAAGCAAGG+TGG - chr7_1:9767751-9767770 Msa1009000:CDS 45.0%
AGCTTTCATTCTGCATACCC+AGG + chr7_1:9767962-9767981 None:intergenic 45.0%
AAATATGTTGCAGGAGTCGG+TGG + chr7_1:9768048-9768067 None:intergenic 45.0%
! CCGACTCCTGCAACATATTT+TGG - chr7_1:9768048-9768067 Msa1009000:intron 45.0%
AGTGAGTTATTGGGGGAAGA+TGG - chr7_1:9768108-9768127 Msa1009000:intron 45.0%
!! GTTAAAGCAATTGGTGCTGC+TGG - chr7_1:9768246-9768265 Msa1009000:CDS 45.0%
TGTTGAGGAAGAGTGAGGCT+TGG + chr7_1:9767241-9767260 None:intergenic 50.0%
!! AAGGGTGTTGAGGAAGAGTG+AGG + chr7_1:9767246-9767265 None:intergenic 50.0%
!! GTTTGGGAAGAAGGGTGTTG+AGG + chr7_1:9767256-9767275 None:intergenic 50.0%
GCATACCCAGGCATAAGCTA+TGG + chr7_1:9767950-9767969 None:intergenic 50.0%
!! GGAAGATGGACTAATCGTGG+CGG - chr7_1:9768122-9768141 Msa1009000:intron 50.0%
TGTTGAGGAAGAGTGAGGCT+TGG + chr7_1:9767241-9767260 None:intergenic 50.0%
!! AAGGGTGTTGAGGAAGAGTG+AGG + chr7_1:9767246-9767265 None:intergenic 50.0%
!! GTTTGGGAAGAAGGGTGTTG+AGG + chr7_1:9767256-9767275 None:intergenic 50.0%
GCATACCCAGGCATAAGCTA+TGG + chr7_1:9767950-9767969 None:intergenic 50.0%
!! GGAAGATGGACTAATCGTGG+CGG - chr7_1:9768122-9768141 Msa1009000:intron 50.0%
!! GGAAGAGTGAGGCTTGGTGT+GGG + chr7_1:9767235-9767254 None:intergenic 55.0%
!! AGGAAGAGTGAGGCTTGGTG+TGG + chr7_1:9767236-9767255 None:intergenic 55.0%
!! GGGGGAAGATGGACTAATCG+TGG - chr7_1:9768119-9768138 Msa1009000:intron 55.0%
!! GGAAGAGTGAGGCTTGGTGT+GGG + chr7_1:9767235-9767254 None:intergenic 55.0%
!! AGGAAGAGTGAGGCTTGGTG+TGG + chr7_1:9767236-9767255 None:intergenic 55.0%
!! GGGGGAAGATGGACTAATCG+TGG - chr7_1:9768119-9768138 Msa1009000:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 9767092 9768467 9767092 ID=Msa1009000;Name=Msa1009000
chr7_1 mRNA 9767092 9768467 9767092 ID=Msa1009000-mRNA-1;Parent=Msa1009000;Name=Msa1009000-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|2|0|408
chr7_1 exon 9768125 9768467 9768125 ID=Msa1009000-mRNA-1:exon:2742;Parent=Msa1009000-mRNA-1
chr7_1 exon 9767092 9767975 9767092 ID=Msa1009000-mRNA-1:exon:2741;Parent=Msa1009000-mRNA-1
chr7_1 CDS 9768125 9768467 9768125 ID=Msa1009000-mRNA-1:cds;Parent=Msa1009000-mRNA-1
chr7_1 CDS 9767092 9767975 9767092 ID=Msa1009000-mRNA-1:cds;Parent=Msa1009000-mRNA-1
Gene Sequence

>Msa1009000

ATGACCAAAATCATAGAAATTTTCAATGTAGCACCATCTTCACAAGAAGAACTACCTTCAGATACATCACTTCCTCTTACTTTCTTTGACATACTATGGTTAAGATTACCACCTGTTCAAAGAATTTTCTTCTATGAATTCCCACACCAAGCCTCACTCTTCCTCAACACCCTTCTTCCCAAACTAAAAAAATCACTTTCAATTGCACTTTTTCATTTTTATCCTCTTTTGGGTCATCTCATTTGGCCTCATGATTCTCACAAGCCAATCATTAAATTCATCAAAGGAAACACTCTTTCACTTACCATAGCTGAATCTGATGCTGATTTCAATCATCTTTCAGATGGTAAAACTTCAACTTCTTTTATCAAATCTTGGGCTTACCTATGTAGAAATCTTGAAAAGGAAGTATCTGAATCAGAATCACCCATTTTTTTGCCACATGAGTTTTGTCCTTTCTATGATAGAAAAATAATCAAGGATCCAAATGAATTAGAGGCAAAATATTTGAGTGATTGGTCAAAGCAAGGTGGAACCAACAATAGAAGCTTAATGGTTTGGGATCTTCAAGTTCCAGAAGATTCATTTAGAGGGTTATTTCAATTATCTCGTTTGGATATCGAAAAGCTTAAGGAATTTGTAGTGTCAAAGCAAAAGGGTACTAGGAATGAGAAAAAAAACGTTCACTTGTCAACTTTTGTTGTATCCATAGCTTATGCCTGGGTATGCAGAATGAAAGCTGAAGAAATTAAGAACAAAAATGCTCTGATGGCTTTGAATATTGATTGTCGGAATCGTTTAGAACCACCGACTCCTGCAACATATTTTGGAAATTGTATTGCAGGAAGACTTGCAATTGTTGAAACAAGTGAGTTATTGGGGGAAGATGGACTAATCGTGGCGGTTGAAGTGTTAAGTGAAGCTTTGGAAACTTTAAAAGATGGAGTGTTGAATGGAGCTGAAAATTTTTGTTCATCGTTACTTGGCGGTCTTGCAATTTCTGATGTTAAAGCAATTGGTGCTGCTGGTTCACCTAAATTTGAGGTTTATAGTACTGATTTTGGTTGTGGAAAACCAAAGAAAGTTGAAATGGTTTCTATAGATAGAACTGGTGCCTTTTGTCTTTCTGATTGTAGAAATGGTGATGGTGTTGAGATAGGTTTTGTGTCTAACAAAAAAGCAATGGAAGCTTTTGCTTCGCTCTTTGTCAAAGGGATTGCATCTTGA

Protein sequence

>Msa1009000

MTKIIEIFNVAPSSQEELPSDTSLPLTFFDILWLRLPPVQRIFFYEFPHQASLFLNTLLPKLKKSLSIALFHFYPLLGHLIWPHDSHKPIIKFIKGNTLSLTIAESDADFNHLSDGKTSTSFIKSWAYLCRNLEKEVSESESPIFLPHEFCPFYDRKIIKDPNELEAKYLSDWSKQGGTNNRSLMVWDLQVPEDSFRGLFQLSRLDIEKLKEFVVSKQKGTRNEKKNVHLSTFVVSIAYAWVCRMKAEEIKNKNALMALNIDCRNRLEPPTPATYFGNCIAGRLAIVETSELLGEDGLIVAVEVLSEALETLKDGVLNGAENFCSSLLGGLAISDVKAIGAAGSPKFEVYSTDFGCGKPKKVEMVSIDRTGAFCLSDCRNGDGVEIGFVSNKKAMEAFASLFVKGIAS*