AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0368550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368550 MtrunA17_Chr3g0111971 94.444 720 4 3 1 684 1 720 0.0 1380
Msa0368550 MtrunA17_Chr3g0129641 31.325 249 136 10 21 247 9 244 7.39e-19 89.4
Msa0368550 MtrunA17_Chr3g0129641 34.426 122 77 2 550 671 250 368 8.80e-16 79.7
Msa0368550 MtrunA17_Chr6g0448881 31.416 226 124 9 21 224 9 225 1.52e-18 88.2
Msa0368550 MtrunA17_Chr6g0448881 31.967 122 80 2 550 671 250 368 6.04e-15 77.4
Msa0368550 MtrunA17_Chr2g0305361 36.620 142 85 2 530 671 292 428 2.40e-18 88.2
Msa0368550 MtrunA17_Chr7g0258721 30.488 246 142 9 21 247 9 244 3.40e-18 87.0
Msa0368550 MtrunA17_Chr7g0258721 34.426 122 77 2 550 671 250 368 1.36e-15 79.3
Msa0368550 MtrunA17_Chr2g0278591 30.973 226 125 9 21 224 9 225 3.52e-18 87.0
Msa0368550 MtrunA17_Chr2g0278591 34.426 122 77 2 550 671 250 368 1.26e-15 79.3
Msa0368550 MtrunA17_Chr7g0223901 30.081 246 143 9 21 247 9 244 4.63e-18 86.7
Msa0368550 MtrunA17_Chr7g0223901 33.607 122 78 2 550 671 250 368 3.91e-15 77.8
Msa0368550 MtrunA17_Chr1g0175391 30.973 226 125 9 21 224 9 225 2.48e-17 84.3
Msa0368550 MtrunA17_Chr1g0175391 33.607 122 78 2 550 671 250 368 3.24e-15 78.2
Msa0368550 MtrunA17_Chr2g0328091 30.531 226 126 9 21 224 9 225 9.97e-17 82.8
Msa0368550 MtrunA17_Chr2g0328091 33.607 122 78 2 550 671 250 368 7.08e-16 80.1
Msa0368550 MtrunA17_Chr7g0224401 26.471 238 146 5 18 233 3 233 2.14e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0368550 AT3G12380.1 69.475 724 178 6 1 683 1 722 0.0 1008
Msa0368550 AT3G12380.2 68.904 730 178 7 1 683 1 728 0.0 1001
Msa0368550 AT2G42100.1 31.602 231 121 9 19 224 8 226 2.63e-19 90.9
Msa0368550 AT2G42100.1 33.607 122 78 2 550 671 251 369 1.51e-14 76.6
Msa0368550 AT3G53750.1 31.325 249 136 10 21 247 9 244 3.34e-19 90.5
Msa0368550 AT3G53750.1 32.787 122 79 2 550 671 250 368 7.69e-15 77.4
Msa0368550 AT3G53750.2 31.325 249 136 10 21 247 9 244 3.34e-19 90.5
Msa0368550 AT3G53750.2 32.787 122 79 2 550 671 250 368 7.69e-15 77.4
Msa0368550 AT2G37620.1 31.325 249 136 10 21 247 9 244 3.34e-19 90.5
Msa0368550 AT2G37620.1 32.787 122 79 2 550 671 250 368 7.69e-15 77.4
Msa0368550 AT2G37620.3 31.325 249 136 10 21 247 9 244 3.34e-19 90.5
Msa0368550 AT2G37620.3 32.787 122 79 2 550 671 250 368 7.69e-15 77.4
Msa0368550 AT2G37620.2 31.325 249 136 10 21 247 9 244 3.34e-19 90.5
Msa0368550 AT2G37620.2 32.787 122 79 2 550 671 250 368 7.69e-15 77.4
Msa0368550 AT2G37620.4 31.325 249 136 10 21 247 9 244 3.34e-19 90.5
Msa0368550 AT2G37620.4 32.787 122 79 2 550 671 250 368 7.69e-15 77.4
Msa0368550 AT5G09810.1 31.325 249 136 10 21 247 9 244 9.56e-19 89.4
Msa0368550 AT5G09810.1 34.426 122 77 2 550 671 250 368 2.07e-15 79.0
Msa0368550 AT3G12110.1 31.416 226 124 9 21 224 9 225 2.74e-18 87.8
Msa0368550 AT3G12110.1 32.787 122 79 2 550 671 250 368 8.57e-15 77.0
Msa0368550 AT3G33520.1 38.525 122 72 1 555 676 298 416 4.31e-18 87.8
Msa0368550 AT3G46520.2 29.915 234 123 9 21 227 9 228 9.64e-18 86.3
Msa0368550 AT3G46520.2 32.787 122 79 2 550 671 250 368 1.19e-13 73.6
Msa0368550 AT3G46520.1 29.915 234 123 9 21 227 9 228 9.64e-18 86.3
Msa0368550 AT3G46520.1 32.787 122 79 2 550 671 250 368 1.19e-13 73.6
Msa0368550 AT3G18780.1 31.416 226 124 9 21 224 9 225 3.00e-17 84.7
Msa0368550 AT3G18780.1 33.333 108 69 2 550 657 250 354 4.21e-13 72.0
Msa0368550 AT5G59370.2 29.487 234 124 9 21 227 9 228 3.18e-17 84.7
Msa0368550 AT5G59370.2 32.787 122 79 2 550 671 250 368 1.30e-13 73.6
Msa0368550 AT5G59370.1 29.487 234 124 9 21 227 9 228 3.18e-17 84.7
Msa0368550 AT5G59370.1 32.787 122 79 2 550 671 250 368 1.30e-13 73.6
Msa0368550 AT3G18780.2 31.416 226 124 9 21 224 9 225 3.27e-17 84.7
Msa0368550 AT3G18780.2 31.967 122 80 2 550 671 250 368 1.49e-14 76.6
Msa0368550 AT3G18780.3 31.416 226 124 9 21 224 9 225 3.27e-17 84.7
Msa0368550 AT3G18780.3 31.967 122 80 2 550 671 250 368 1.49e-14 76.6
Msa0368550 AT1G49240.1 30.303 231 120 9 21 224 9 225 3.30e-17 84.7
Msa0368550 AT1G49240.1 31.967 122 80 2 550 671 250 368 1.43e-14 76.6
Msa0368550 AT2G42090.1 28.279 244 139 10 21 247 3 227 1.48e-16 82.4
Msa0368550 AT2G42090.1 33.333 123 79 2 549 671 238 357 1.42e-12 70.1
Msa0368550 AT2G42170.5 33.607 122 78 2 550 671 104 222 3.77e-14 72.8
Msa0368550 AT2G42170.1 33.607 122 78 2 550 671 202 320 7.35e-14 73.9
Msa0368550 AT2G42170.1 33.858 127 66 5 116 227 57 180 1.80e-11 66.6
Msa0368550 AT2G42170.3 33.607 122 78 2 550 671 202 320 7.35e-14 73.9
Msa0368550 AT2G42170.3 33.858 127 66 5 116 227 57 180 1.80e-11 66.6
Msa0368550 AT3G27000.1 27.234 235 140 7 22 233 7 233 9.59e-14 73.9
Msa0368550 AT2G42170.4 35.577 104 64 2 550 653 202 302 1.07e-11 67.0
Msa0368550 AT2G42170.4 33.871 124 64 5 116 224 57 177 1.19e-11 67.0
Msa0368550 AT2G42170.2 35.577 104 64 2 550 653 202 302 1.07e-11 67.0
Msa0368550 AT2G42170.2 33.871 124 64 5 116 224 57 177 1.19e-11 67.0

Find 193 sgRNAs with CRISPR-Local

Find 435 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGGATTGGCGTTGGATTT+TGG 0.159254 3_1:-65340447 None:intergenic
TTCAGAAGCTCGATTGTTTC+TGG 0.165498 3_1:+65343782 Msa0368550:CDS
CGACAGCTTCCTTTATAAAT+TGG 0.189204 3_1:-65343529 None:intergenic
CTCCGAAAGGTCCTTGTATT+TGG 0.211732 3_1:-65345026 None:intergenic
CCAATGGAGCTGCCACATTT+TGG 0.236456 3_1:-65343910 None:intergenic
TTTGGACTGAACAAAATTTC+AGG 0.251702 3_1:-65345604 None:intergenic
AACAATCTGAAAATCTTCTT+TGG 0.277742 3_1:-65345557 None:intergenic
TTCTTGTGAGAAAGTGAAAT+TGG 0.290408 3_1:-65340271 None:intergenic
GCGCTTCCTATTTCCGTATT+GGG 0.313695 3_1:+65340513 Msa0368550:CDS
AGGATGGATTATTATGAAAA+AGG 0.324137 3_1:+65345916 Msa0368550:CDS
AGAGTACCCAATACGGAAAT+AGG 0.331001 3_1:-65340519 None:intergenic
CGAATGGGTGCAACAGGATC+AGG 0.331988 3_1:+65341696 Msa0368550:CDS
TCCTAGCTTCAGCAACAATA+TGG 0.343234 3_1:-65346073 None:intergenic
AGTTCAATCTCGAAGTAAAA+TGG 0.346799 3_1:+65342297 Msa0368550:CDS
CCAAAATGTGGCAGCTCCAT+TGG 0.349845 3_1:+65343910 Msa0368550:CDS
CATAACAATGTTCCATCTTC+AGG 0.350576 3_1:-65343743 None:intergenic
TTGCGAGAAAGGCAGCAATA+AGG 0.354563 3_1:+65343973 Msa0368550:CDS
GGCGCTTCCTATTTCCGTAT+TGG 0.360049 3_1:+65340512 Msa0368550:CDS
AAGTTGCCAATCTTCATCTT+TGG 0.360116 3_1:-65345227 None:intergenic
GGAAGCTGTCGCACTAATAT+TGG 0.366748 3_1:+65343541 Msa0368550:CDS
GACGGGGAACCAATTTATAA+AGG 0.369369 3_1:+65343520 Msa0368550:CDS
TAGAGCACTTGATCCGGTTA+TGG 0.370466 3_1:+65345831 Msa0368550:CDS
TCAGAAGGAGGCTCCTCAAC+TGG 0.380356 3_1:-65343942 None:intergenic
CAGTCCTTGCGGAAACAAAA+AGG 0.381377 3_1:+65344197 Msa0368550:CDS
ACAACCCACCCGATCGGGTC+GGG 0.388044 3_1:+65340314 Msa0368550:five_prime_UTR
GGCTCCTCCACGAATGGAAA+TGG 0.391186 3_1:+65345085 Msa0368550:CDS
GCTTCCACCAGTCACAAGTA+TGG 0.392619 3_1:-65345728 None:intergenic
TTTGATCGAATGGGTGCAAC+AGG 0.394008 3_1:+65341690 Msa0368550:CDS
TGGAAAGTTAGTTAGATTGC+TGG 0.400077 3_1:-65346053 None:intergenic
TTTGATAGCTTGTTGAAAAG+AGG 0.403014 3_1:+65344517 Msa0368550:intron
AGGTCAAAGGTTGCGAGAAA+TGG 0.404209 3_1:+65344004 Msa0368550:CDS
GCGTGGCGCCTCAGCAGGTT+GGG 0.405100 3_1:-65345521 None:intergenic
AGCTCTGTGTTATCCTCATC+TGG 0.405219 3_1:-65345292 None:intergenic
GAAGCGCTATGAAGAGGAAT+TGG 0.405469 3_1:+65344590 Msa0368550:CDS
AATTGTTCCAAGTAAAGCTC+TGG 0.406389 3_1:-65344998 None:intergenic
TGGGAGCTACTTTCTACCTT+GGG 0.410072 3_1:-65345502 None:intergenic
TGATCAACTCCAATCCAGTT+TGG 0.410760 3_1:-65345622 None:intergenic
TTGGGAGCTACTTTCTACCT+TGG 0.411598 3_1:-65345503 None:intergenic
TGCCAAATACAAGGACCTTT+CGG 0.412730 3_1:+65345024 Msa0368550:CDS
GGAGAAACTGTTACCATTGT+TGG 0.413207 3_1:+65340888 Msa0368550:intron
TGCGAGAAAGGCAGCAATAA+GGG 0.413882 3_1:+65343974 Msa0368550:CDS
CTTTAACAACCCACCCGATC+GGG 0.418323 3_1:+65340309 Msa0368550:five_prime_UTR
TATCACAAACACTTCGTTGT+TGG 0.429773 3_1:-65342691 None:intergenic
TGCTGCCTTTGATCGTGGTA+AGG 0.430300 3_1:+65345186 Msa0368550:CDS
CCCTGGCATCATTGAACGCC+TGG 0.431968 3_1:+65345759 Msa0368550:CDS
TGAGGAAGAGATTGCGAGAA+AGG 0.434305 3_1:+65343962 Msa0368550:CDS
CGAACGCGTGGCGCCTCAGC+AGG 0.435514 3_1:-65345526 None:intergenic
AACGCCTGGAAGCTGGAATT+CGG 0.436950 3_1:+65345773 Msa0368550:CDS
TCATCCGAATTCCAGCTTCC+AGG 0.437442 3_1:-65345777 None:intergenic
CCACGCCATGCATCCATAAC+CGG 0.439157 3_1:-65345844 None:intergenic
TACTTTGATTGTACTCGCTC+TGG 0.441154 3_1:+65340936 Msa0368550:CDS
GATCAAAGGCAGCAGTTGTC+AGG 0.443054 3_1:-65345177 None:intergenic
ACTATTTCCATTTCCATTCG+TGG 0.445874 3_1:-65345092 None:intergenic
AAAGTATTAGTACCTATAGA+TGG 0.446199 3_1:-65342349 None:intergenic
ACTTATGGAGTTCCATCTAT+AGG 0.448061 3_1:+65342337 Msa0368550:CDS
GGAACTGAAGCGATTGTAAT+CGG 0.451537 3_1:-65340465 None:intergenic
TTGGTGCCAAAGATGAAGAT+TGG 0.451676 3_1:+65345221 Msa0368550:CDS
CGCGTGGCGCCTCAGCAGGT+TGG 0.453077 3_1:-65345522 None:intergenic
ATCATTGAACGCCTGGAAGC+TGG 0.453300 3_1:+65345766 Msa0368550:CDS
TCTGCCGTCAGCATGTCATC+CGG 0.453326 3_1:-65344284 None:intergenic
TTCTCATTAGACGCAGCGTC+AGG 0.453339 3_1:-65344242 None:intergenic
TCTGCTTATGCATCAGCCCC+TGG 0.455002 3_1:+65345871 Msa0368550:CDS
TGCATACACATTCTGTGATC+AGG 0.456220 3_1:-65342270 None:intergenic
TTGGACTGAACAAAATTTCA+GGG 0.458568 3_1:-65345603 None:intergenic
CGTAAACGACTCAAAACAAA+TGG 0.459916 3_1:+65345061 Msa0368550:CDS
AATGAGAAGGTTATCATGTA+AGG 0.466365 3_1:+65345675 Msa0368550:CDS
AAACTGGATTGGAGTTGATC+AGG 0.466958 3_1:+65345624 Msa0368550:CDS
AGCTTGCCCGCATCTCTTCA+AGG 0.467261 3_1:+65345311 Msa0368550:CDS
GGCTAGATTTACATGGGAAA+AGG 0.468160 3_1:+65343713 Msa0368550:CDS
TGACATGCTGACGGCAGAGC+AGG 0.469962 3_1:+65344289 Msa0368550:CDS
TCTACCTTGGGCACAAATGT+TGG 0.469972 3_1:-65345490 None:intergenic
GGAGAACCCAGAGCTTTACT+TGG 0.470796 3_1:+65344991 Msa0368550:CDS
CCGCATCTCTTCAAGGCTCC+AGG 0.473430 3_1:+65345318 Msa0368550:CDS
TGGTGAGCCCCGACCCGATC+GGG 0.474643 3_1:-65340322 None:intergenic
CAAAATGTGGCAGCTCCATT+GGG 0.477487 3_1:+65343911 Msa0368550:CDS
GAGACTCAGTGCTGCTCAAA+GGG 0.484024 3_1:+65345141 Msa0368550:CDS
TCAAAGTACTTCAACAATGC+TGG 0.488489 3_1:-65340921 None:intergenic
TCCAGGCGTTCAATGATGCC+AGG 0.491307 3_1:-65345760 None:intergenic
TTGTTCAGTCCAAACTGGAT+TGG 0.495233 3_1:+65345613 Msa0368550:CDS
ATCATGTAAGGATGAAAAGC+TGG 0.497771 3_1:+65345687 Msa0368550:CDS
ATAGCCAGTCTCTGCTAAGA+AGG 0.501279 3_1:-65344132 None:intergenic
AATAGTTAGAGCACTTGATC+CGG 0.502102 3_1:+65345825 Msa0368550:CDS
GGTAAGGGCGAGGATACATT+TGG 0.505021 3_1:+65345202 Msa0368550:CDS
TGGGGTTAGATGAGATGGCC+GGG 0.510141 3_1:+65345647 Msa0368550:CDS
TTTCACACTCACATATGATA+AGG 0.513121 3_1:-65343613 None:intergenic
GCGATTTAAGAAGTTGAAGA+TGG 0.513798 3_1:-65340370 None:intergenic
CGATCCTTCTTAGCAGAGAC+TGG 0.517740 3_1:+65344128 Msa0368550:CDS
CTCGCAATCTCTTCCTCAGA+AGG 0.518831 3_1:-65343957 None:intergenic
AATACAGGGCTAGATTTACA+TGG 0.523587 3_1:+65343706 Msa0368550:intron
TTTCATTCTCCTCTCATGTG+AGG 0.524451 3_1:+65346184 Msa0368550:three_prime_UTR
ACTTCAACAATGCTGGATCA+TGG 0.526588 3_1:-65340914 None:intergenic
GATTGTAATCGGATTGGCGT+TGG 0.527135 3_1:-65340454 None:intergenic
TCAATTAAATCTATGTCCGA+TGG 0.528487 3_1:+65344549 Msa0368550:CDS
CTGCCGTCAGCATGTCATCC+GGG 0.530851 3_1:-65344283 None:intergenic
CAGAGACTGGCTATGTCTCT+AGG 0.531810 3_1:+65344141 Msa0368550:CDS
CAACCCACCCGATCGGGTCG+GGG 0.531989 3_1:+65340315 Msa0368550:five_prime_UTR
TTGGGTGCCACCTCCAGTTG+AGG 0.532459 3_1:+65343929 Msa0368550:CDS
CACACAAACATTCACTAGGA+TGG 0.534118 3_1:+65345900 Msa0368550:CDS
CTCGCCCTTACCACGATCAA+AGG 0.535951 3_1:-65345191 None:intergenic
GACTGGCTATGTCTCTAGGC+AGG 0.538143 3_1:+65344145 Msa0368550:CDS
TCTTCAACTTCTTAAATCGC+AGG 0.539615 3_1:+65340373 Msa0368550:five_prime_UTR
AGGACTGCACAACTTTACTA+CGG 0.540370 3_1:-65344181 None:intergenic
AATGTTTGTGTGTGGAAACC+AGG 0.541962 3_1:-65345889 None:intergenic
CAACTGGAGGTGGCACCCAA+TGG 0.542988 3_1:-65343926 None:intergenic
GGAGGCTCCTCAACTGGAGG+TGG 0.543167 3_1:-65343936 None:intergenic
AGCTGTCGCACTAATATTGG+TGG 0.543175 3_1:+65343544 Msa0368550:CDS
ACAATTGCGTGCCAAATACA+AGG 0.543355 3_1:+65345015 Msa0368550:CDS
AGAGACTCAGTGCTGCTCAA+AGG 0.543891 3_1:+65345140 Msa0368550:CDS
AATGGAGGCTCCTCCACGAA+TGG 0.545578 3_1:+65345079 Msa0368550:CDS
CTGGAGCCTTGAAGAGATGC+GGG 0.545647 3_1:-65345317 None:intergenic
AAAGGTTGAAGACCTGAAGA+TGG 0.546155 3_1:+65343731 Msa0368550:CDS
GTGGGGTTAGATGAGATGGC+CGG 0.546632 3_1:+65345646 Msa0368550:CDS
TCCATATTGTTGCTGAAGCT+AGG 0.549499 3_1:+65346072 Msa0368550:three_prime_UTR
TGAGCCCCGACCCGATCGGG+TGG 0.549539 3_1:-65340319 None:intergenic
GGAACATTGTTATGTTGCAC+AGG 0.549607 3_1:+65343752 Msa0368550:CDS
ACTTTAACAACCCACCCGAT+CGG 0.556231 3_1:+65340308 Msa0368550:five_prime_UTR
GGATCCAACATTTGTGCCCA+AGG 0.558370 3_1:+65345486 Msa0368550:CDS
GCTGCCTTTGATCGTGGTAA+GGG 0.560441 3_1:+65345187 Msa0368550:CDS
TCAGGTGGGGTTAGATGAGA+TGG 0.560508 3_1:+65345642 Msa0368550:CDS
ACACATTCTGTGATCAGGAT+AGG 0.562462 3_1:-65342265 None:intergenic
TTGATCCGGTTATGGATGCA+TGG 0.569262 3_1:+65345839 Msa0368550:CDS
AAGAGGAATTGGAAAGGGAA+AGG 0.571587 3_1:+65344601 Msa0368550:CDS
TTTGGAGATGAAAGGCATTG+TGG 0.573291 3_1:-65340429 None:intergenic
AAGGCATTGTGGAAGTGAAG+AGG 0.576553 3_1:-65340418 None:intergenic
TGAAGCGATTGTAATCGGAT+TGG 0.582038 3_1:-65340460 None:intergenic
AAAACAGAAGCGCTATGAAG+AGG 0.582251 3_1:+65344584 Msa0368550:CDS
ATTGTTCCAAGTAAAGCTCT+GGG 0.582286 3_1:-65344997 None:intergenic
AGTTGAGGAGCCTCCTTCTG+AGG 0.582751 3_1:+65343944 Msa0368550:CDS
CAATTAAATCTATGTCCGAT+GGG 0.583416 3_1:+65344550 Msa0368550:CDS
GAATGGGTGCAACAGGATCA+GGG 0.585195 3_1:+65341697 Msa0368550:CDS
CTTTGATCGTGGTAAGGGCG+AGG 0.585724 3_1:+65345192 Msa0368550:CDS
ACTAATTCCATACTTGTGAC+TGG 0.586278 3_1:+65345721 Msa0368550:CDS
CTATGAAGAGGAATTGGAAA+GGG 0.588782 3_1:+65344596 Msa0368550:CDS
ATGGTGAGCCCCGACCCGAT+CGG 0.589594 3_1:-65340323 None:intergenic
AACAACCCACCCGATCGGGT+CGG 0.592888 3_1:+65340313 Msa0368550:five_prime_UTR
TGGATTGGAGTTGATCAGGT+GGG 0.593502 3_1:+65345628 Msa0368550:CDS
GTCGATAACGATGGGAGTGG+TGG 0.594078 3_1:-65340486 None:intergenic
GTTTGAGAGAGTACCCAATA+CGG 0.594884 3_1:-65340526 None:intergenic
AAGTAGCTCCCAACCTGCTG+AGG 0.596677 3_1:+65345513 Msa0368550:CDS
GGTCTGGCAGAAAGGAGCTA+AGG 0.597955 3_1:+65343872 Msa0368550:intron
TGAAAATCTTCTTTGGTGAG+CGG 0.599646 3_1:-65345550 None:intergenic
GCGCCATTGTCGATAACGAT+GGG 0.599979 3_1:-65340494 None:intergenic
TAAGGGAGAAACAAGGTCAA+AGG 0.600031 3_1:+65343991 Msa0368550:CDS
GAATGCTGCGTCAACACCAA+AGG 0.600730 3_1:-65342654 None:intergenic
GGACTGCACAACTTTACTAC+GGG 0.602389 3_1:-65344180 None:intergenic
AAGAGTCTAAGTAGCAGACA+TGG 0.602452 3_1:-65340342 None:intergenic
GGATTGGAGTTGATCAGGTG+GGG 0.603330 3_1:+65345629 Msa0368550:CDS
TGGATCATGGTCACCAACAA+TGG 0.605508 3_1:-65340901 None:intergenic
CGGCCACGACATAAAGCCAC+AGG 0.608512 3_1:+65340700 Msa0368550:CDS
AATAGTTTGACAGGTAGTGT+TGG 0.609953 3_1:+65345109 Msa0368550:intron
ATACCTGTGGCTTTATGTCG+TGG 0.613268 3_1:-65340703 None:intergenic
TTGGTGAGCGGACGAACGCG+TGG 0.616384 3_1:-65345538 None:intergenic
GAGCCCCGACCCGATCGGGT+GGG 0.618304 3_1:-65340318 None:intergenic
ACAACTGCTGCCTTTGATCG+TGG 0.621156 3_1:+65345181 Msa0368550:CDS
TGGCCGGGGTCTCAATGAGA+AGG 0.621786 3_1:+65345662 Msa0368550:CDS
CCTGGAGCCTTGAAGAGATG+CGG 0.621822 3_1:-65345318 None:intergenic
CTGGATTGGAGTTGATCAGG+TGG 0.622971 3_1:+65345627 Msa0368550:CDS
TTGACAGGTAGTGTTGGTCG+TGG 0.623337 3_1:+65345115 Msa0368550:intron
ATTGTCGATAACGATGGGAG+TGG 0.624254 3_1:-65340489 None:intergenic
AAGGAAACAACAGCTAGAAG+AGG 0.625342 3_1:+65344620 Msa0368550:CDS
ATATATATTGTCTAAAATCG+AGG 0.625946 3_1:-65346025 None:intergenic
CTGGCAGAAAGGAGCTAAGG+AGG 0.626277 3_1:+65343875 Msa0368550:intron
AATTCCATACTTGTGACTGG+TGG 0.627990 3_1:+65345724 Msa0368550:CDS
AGCGCCATTGTCGATAACGA+TGG 0.629390 3_1:-65340495 None:intergenic
CCAGGCGTTCAATGATGCCA+GGG 0.631341 3_1:-65345759 None:intergenic
GCTAACAGTCCTCACATGAG+AGG 0.631500 3_1:-65346193 None:intergenic
TCCACACACAAACATTCACT+AGG 0.632292 3_1:+65345896 Msa0368550:CDS
TAACCTTCTCATTGAGACCC+CGG 0.634694 3_1:-65345665 None:intergenic
CAAAGGCAGCAGTTGTCAGG+AGG 0.634784 3_1:-65345174 None:intergenic
GCAATCTCTTCCTCAGAAGG+AGG 0.635472 3_1:-65343954 None:intergenic
TCCTAGTGAATGTTTGTGTG+TGG 0.637957 3_1:-65345897 None:intergenic
ACTCCCATCGTTATCGACAA+TGG 0.639040 3_1:+65340491 Msa0368550:CDS
TCGCTTTCGAATGCTGATCG+TGG 0.643501 3_1:-65340960 None:intergenic
GAAGGAGGCTCCTCAACTGG+AGG 0.645561 3_1:-65343939 None:intergenic
GAGAAATGGCTGAGGCGAAG+AGG 0.646132 3_1:+65344018 Msa0368550:CDS
ATGTTTGTGTGTGGAAACCA+GGG 0.651346 3_1:-65345888 None:intergenic
AAGGTTGCGAGAAATGGCTG+AGG 0.651418 3_1:+65344010 Msa0368550:CDS
GTAAAGTTGTGCAGTCCTTG+CGG 0.652419 3_1:+65344186 Msa0368550:CDS
AAACGACTCAAAACAAATGG+AGG 0.653455 3_1:+65345064 Msa0368550:CDS
AATGGGTGCAACAGGATCAG+GGG 0.654606 3_1:+65341698 Msa0368550:CDS
ATACAGGGCTAGATTTACAT+GGG 0.656838 3_1:+65343707 Msa0368550:intron
ATTTCCATTTCCATTCGTGG+AGG 0.662358 3_1:-65345089 None:intergenic
GCTATGAAGAGGAATTGGAA+AGG 0.664977 3_1:+65344595 Msa0368550:CDS
CCGGTTATGGATGCATGGCG+TGG 0.666067 3_1:+65345844 Msa0368550:CDS
CGATGACGATGAACCAGATG+AGG 0.674955 3_1:+65345279 Msa0368550:CDS
GGGGTTAGATGAGATGGCCG+GGG 0.683662 3_1:+65345648 Msa0368550:CDS
TTAAATCTATGTCCGATGGG+AGG 0.689589 3_1:+65344553 Msa0368550:CDS
GTATACGCTTATAAACATCC+CGG 0.690841 3_1:+65344265 Msa0368550:CDS
CATCCCGGATGACATGCTGA+CGG 0.695168 3_1:+65344280 Msa0368550:CDS
GCAGCAATAAGGGAGAAACA+AGG 0.705579 3_1:+65343984 Msa0368550:CDS
GAGCTGGAAAATGAATTACG+TGG 0.728785 3_1:+65344056 Msa0368550:CDS
ATTCGGATGATTAGACCCTG+CGG 0.743477 3_1:+65345790 Msa0368550:CDS
TGTTTGTGTGTGGAAACCAG+GGG 0.796872 3_1:-65345887 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAATTTTTAAATAAAT+AGG + chr3_1:65343357-65343376 Msa0368550:intron 0.0%
!!! TTTTATCTTTTTATAGAAAT+AGG - chr3_1:65341896-65341915 None:intergenic 10.0%
!!! AATTTTGAATTTTTTCATCA+TGG + chr3_1:65340580-65340599 Msa0368550:intron 15.0%
!!! ATTTTGAATTTTTTCATCAT+GGG + chr3_1:65340581-65340600 Msa0368550:intron 15.0%
!! AATATGAATAATTTCTAACT+AGG + chr3_1:65341256-65341275 Msa0368550:intron 15.0%
!! ATATGAATAATTTCTAACTA+GGG + chr3_1:65341257-65341276 Msa0368550:intron 15.0%
!!! CAATTTTCTAAGAAATTATT+TGG - chr3_1:65344451-65344470 None:intergenic 15.0%
!!! TTTTTGGTGAATTTTTAGAT+GGG + chr3_1:65340633-65340652 Msa0368550:intron 20.0%
!!! TGTTTTTCAGTTTGAAATAA+TGG + chr3_1:65340986-65341005 Msa0368550:CDS 20.0%
!! ATATATGTTAATGTCATACA+AGG - chr3_1:65341430-65341449 None:intergenic 20.0%
!! TGTACCATATTACATATTAT+GGG + chr3_1:65341554-65341573 Msa0368550:intron 20.0%
!! TATTCCCATAATATGTAATA+TGG - chr3_1:65341561-65341580 None:intergenic 20.0%
!! TATTACATATTATGGGAATA+TGG + chr3_1:65341561-65341580 Msa0368550:intron 20.0%
!! ATAAAAAAACACTTTACTCA+TGG - chr3_1:65341729-65341748 None:intergenic 20.0%
!!! TTATGCTATTTGCTTTATTA+AGG + chr3_1:65342773-65342792 Msa0368550:intron 20.0%
!!! TTGCTTTATTAAGGATTTTA+TGG + chr3_1:65342782-65342801 Msa0368550:intron 20.0%
!! AACATTGTTAAAAAAACTGT+AGG + chr3_1:65343285-65343304 Msa0368550:intron 20.0%
!! ACATTGTTAAAAAAACTGTA+GGG + chr3_1:65343286-65343305 Msa0368550:intron 20.0%
!! TTATTAACACTTTACACATT+TGG - chr3_1:65343448-65343467 None:intergenic 20.0%
!!! TTATATTTTCAGTTTGTTGA+CGG + chr3_1:65343502-65343521 Msa0368550:intron 20.0%
!! TAAGAAATAGTACGTATTTA+GGG - chr3_1:65343669-65343688 None:intergenic 20.0%
!! TCTTATTAAATTCTCAATAC+AGG + chr3_1:65343691-65343710 Msa0368550:intron 20.0%
!! CTTATTAAATTCTCAATACA+GGG + chr3_1:65343692-65343711 Msa0368550:intron 20.0%
!!! ATATATATTGTCTAAAATCG+AGG - chr3_1:65346028-65346047 None:intergenic 20.0%
!!! CTTTAAAGTTTGTTCCTTTT+TGG + chr3_1:65340617-65340636 Msa0368550:intron 25.0%
! CATCTAAAAATTCACCAAAA+AGG - chr3_1:65340634-65340653 None:intergenic 25.0%
!!! CTTTTTGGTGAATTTTTAGA+TGG + chr3_1:65340632-65340651 Msa0368550:intron 25.0%
! CAAACATAAGGTTAATTGTT+GGG + chr3_1:65340822-65340841 Msa0368550:intron 25.0%
! TATACTCACATAATTGTAAC+AGG - chr3_1:65341026-65341045 None:intergenic 25.0%
! TGTTACAATTATGTGAGTAT+AGG + chr3_1:65341025-65341044 Msa0368550:intron 25.0%
! TGCATTTGTGTGAAAAAATA+TGG + chr3_1:65341139-65341158 Msa0368550:intron 25.0%
! GAAATTATTCATATTGCTTG+TGG - chr3_1:65341251-65341270 None:intergenic 25.0%
! TAATTTCTAACTAGGGAAAT+AGG + chr3_1:65341264-65341283 Msa0368550:intron 25.0%
!!! CATTTTTGTGTGTTAGTTTT+AGG - chr3_1:65341340-65341359 None:intergenic 25.0%
! CTAAAACTAACACACAAAAA+TGG + chr3_1:65341338-65341357 Msa0368550:intron 25.0%
! TACTTGTTCATACTACAAAA+AGG - chr3_1:65341391-65341410 None:intergenic 25.0%
! TTTGTAGTATGAACAAGTAA+TGG + chr3_1:65341392-65341411 Msa0368550:intron 25.0%
! GTGTACCATATTACATATTA+TGG + chr3_1:65341553-65341572 Msa0368550:intron 25.0%
!! CATTAATGTACAGTGTTTTA+AGG + chr3_1:65341585-65341604 Msa0368550:intron 25.0%
! TCAGTAATATTAAACTCCAA+TGG + chr3_1:65341794-65341813 Msa0368550:intron 25.0%
! TAATATTAAACTCCAATGGT+AGG + chr3_1:65341798-65341817 Msa0368550:intron 25.0%
! ATGATATAAGCTGCAAATTA+TGG - chr3_1:65341841-65341860 None:intergenic 25.0%
! GAACTTATGAAAACAACTTA+TGG - chr3_1:65342012-65342031 None:intergenic 25.0%
! AACATGTATTTACAAAACCA+AGG - chr3_1:65342162-65342181 None:intergenic 25.0%
!! AAAGTATTAGTACCTATAGA+TGG - chr3_1:65342352-65342371 None:intergenic 25.0%
!!! AATACTTTTTAACCCTACAA+TGG + chr3_1:65342364-65342383 Msa0368550:intron 25.0%
!! TGTTGATATCTGTTTAAGTT+AGG + chr3_1:65342577-65342596 Msa0368550:intron 25.0%
!! GCATTGTACATGTAATTTTA+TGG + chr3_1:65342599-65342618 Msa0368550:intron 25.0%
!! AAATAGCATAAAAAGCATAC+CGG - chr3_1:65342764-65342783 None:intergenic 25.0%
! AAACTATCAGAGTAACTATT+AGG + chr3_1:65343060-65343079 Msa0368550:intron 25.0%
! TTCTATCATAAGCCATATTT+CGG - chr3_1:65343112-65343131 None:intergenic 25.0%
!!! TGTTGTTGTTGCTTTATTTA+AGG + chr3_1:65343192-65343211 Msa0368550:intron 25.0%
! CATTGTTAAAAAAACTGTAG+GGG + chr3_1:65343287-65343306 Msa0368550:intron 25.0%
!! ATAGGATGAATCATTTTCAA+TGG + chr3_1:65343375-65343394 Msa0368550:intron 25.0%
!!! TATATTTTCAGTTTGTTGAC+GGG + chr3_1:65343503-65343522 Msa0368550:intron 25.0%
! AAGAAATAGTACGTATTTAG+GGG - chr3_1:65343668-65343687 None:intergenic 25.0%
! GTAAGAAATAGTACGTATTT+AGG - chr3_1:65343670-65343689 None:intergenic 25.0%
!! GAATTTCTTTTGAATCAACT+TGG + chr3_1:65344083-65344102 Msa0368550:intron 25.0%
!!! GCTTCTTTTTTTTTTTTGCT+TGG + chr3_1:65344398-65344417 Msa0368550:intron 25.0%
! ATTAAGACTATAAGCACAAA+TGG - chr3_1:65344426-65344445 None:intergenic 25.0%
! TCTTAGAAAATTGTTTACTG+TGG + chr3_1:65344458-65344477 Msa0368550:intron 25.0%
!!! TGCTTTAAAATGTTTCTGAT+TGG + chr3_1:65344944-65344963 Msa0368550:intron 25.0%
! AAAAAATCCTGTTGATATGT+TGG + chr3_1:65345450-65345469 Msa0368550:intron 25.0%
! AACAATCTGAAAATCTTCTT+TGG - chr3_1:65345560-65345579 None:intergenic 25.0%
!! GAAGATTTTCAGATTGTTTT+CGG + chr3_1:65345562-65345581 Msa0368550:CDS 25.0%
!!! AGTGCTCTAACTATTTTTAT+AGG - chr3_1:65345820-65345839 None:intergenic 25.0%
!!! AGGATGGATTATTATGAAAA+AGG + chr3_1:65345916-65345935 Msa0368550:CDS 25.0%
! ATTATGAAAAAGGTGAAGAT+TGG + chr3_1:65345926-65345945 Msa0368550:CDS 25.0%
TTCTTGTGAGAAAGTGAAAT+TGG - chr3_1:65340274-65340293 None:intergenic 30.0%
! TTTTTCGCAACATTGTTCAA+CGG + chr3_1:65340680-65340699 Msa0368550:CDS 30.0%
GTCTATGTTTAGCAAACATA+AGG + chr3_1:65340810-65340829 Msa0368550:intron 30.0%
GCAAACATAAGGTTAATTGT+TGG + chr3_1:65340821-65340840 Msa0368550:intron 30.0%
! TTTTTAACATTGTGTGACAC+AGG + chr3_1:65340867-65340886 Msa0368550:intron 30.0%
TACAATTATGTGAGTATAGG+AGG + chr3_1:65341028-65341047 Msa0368550:intron 30.0%
ATAGGTCACAACATCAAAAT+AGG - chr3_1:65341072-65341091 None:intergenic 30.0%
ATAGGTCACAACATCAAAAT+AGG - chr3_1:65341072-65341091 None:intergenic 30.0%
CATAAGTTCAAACCTATCTA+TGG - chr3_1:65341185-65341204 None:intergenic 30.0%
TGAATTGAAGTGAGACAATA+AGG + chr3_1:65341453-65341472 Msa0368550:intron 30.0%
GAATGTAACCATATGTTCAT+AGG + chr3_1:65341508-65341527 Msa0368550:intron 30.0%
GTTATGAACCTATGAACATA+TGG - chr3_1:65341519-65341538 None:intergenic 30.0%
TAGGTTCATAACAACTAGTT+AGG + chr3_1:65341527-65341546 Msa0368550:intron 30.0%
AGGTTCATAACAACTAGTTA+GGG + chr3_1:65341528-65341547 Msa0368550:intron 30.0%
ATTATGGTGTTTATCCAAAC+AGG - chr3_1:65341825-65341844 None:intergenic 30.0%
! TTTTACTTCGAGATTGAACT+GGG - chr3_1:65342297-65342316 None:intergenic 30.0%
! ATTTTACTTCGAGATTGAAC+TGG - chr3_1:65342298-65342317 None:intergenic 30.0%
AGTTCAATCTCGAAGTAAAA+TGG + chr3_1:65342297-65342316 Msa0368550:CDS 30.0%
!!! GAACTTCTTTTTGAGACTTA+TGG + chr3_1:65342322-65342341 Msa0368550:CDS 30.0%
! TTTTCATTTACGAATAGACC+TGG - chr3_1:65342474-65342493 None:intergenic 30.0%
TCTTGTGACATAGTTATTAC+TGG + chr3_1:65342533-65342552 Msa0368550:intron 30.0%
! TGACATAGTTATTACTGGTT+TGG + chr3_1:65342538-65342557 Msa0368550:intron 30.0%
! ATTTTATGGTAAAGACGAGA+TGG + chr3_1:65342796-65342815 Msa0368550:intron 30.0%
! TTTTATGGTAAAGACGAGAT+GGG + chr3_1:65342797-65342816 Msa0368550:intron 30.0%
GACCTATAGATTCTGTAATA+AGG + chr3_1:65342994-65343013 Msa0368550:intron 30.0%
CTCCTTATTACAGAATCTAT+AGG - chr3_1:65342999-65343018 None:intergenic 30.0%
AGTAACTATTAGGAAAGAGT+TGG + chr3_1:65343070-65343089 Msa0368550:intron 30.0%
AGAGTTGGAAATTAATGAGT+TGG + chr3_1:65343085-65343104 Msa0368550:intron 30.0%
TGGCTTATGATAGAACATTA+TGG + chr3_1:65343117-65343136 Msa0368550:intron 30.0%
TTTAACAATGTTTGTCTGTG+AGG - chr3_1:65343277-65343296 None:intergenic 30.0%
!!! ATATTTTCAGTTTGTTGACG+GGG + chr3_1:65343504-65343523 Msa0368550:intron 30.0%
TTTCACACTCACATATGATA+AGG - chr3_1:65343616-65343635 None:intergenic 30.0%
!! GATTGTTTCTGGTAAGAAAT+AGG + chr3_1:65343793-65343812 Msa0368550:intron 30.0%
AACAGTAGAAAAACTTAGAC+GGG - chr3_1:65343828-65343847 None:intergenic 30.0%
GAACAGTAGAAAAACTTAGA+CGG - chr3_1:65343829-65343848 None:intergenic 30.0%
TTAAATGGCGTATAAGTCTT+AGG - chr3_1:65343851-65343870 None:intergenic 30.0%
AAGACTTATACGCCATTTAA+TGG + chr3_1:65343851-65343870 Msa0368550:intron 30.0%
!!! CCACATTTTGGTTTTTTCTT+CGG - chr3_1:65343901-65343920 None:intergenic 30.0%
GTCATCAAAAATAAATGAGC+TGG + chr3_1:65344040-65344059 Msa0368550:CDS 30.0%
AAGCTACAAGCATATTTGAA+GGG - chr3_1:65344382-65344401 None:intergenic 30.0%
CAAAGTTGACAATGTTTGTT+GGG + chr3_1:65344485-65344504 Msa0368550:intron 30.0%
!! TTTGATAGCTTGTTGAAAAG+AGG + chr3_1:65344517-65344536 Msa0368550:intron 30.0%
TCAATTAAATCTATGTCCGA+TGG + chr3_1:65344549-65344568 Msa0368550:CDS 30.0%
CAATTAAATCTATGTCCGAT+GGG + chr3_1:65344550-65344569 Msa0368550:CDS 30.0%
AGCTTGAATAAATTGAAGCA+TGG - chr3_1:65344663-65344682 None:intergenic 30.0%
AAGCTTACTAAGTTCCTTAA+TGG + chr3_1:65344812-65344831 Msa0368550:intron 30.0%
AGCTTACTAAGTTCCTTAAT+GGG + chr3_1:65344813-65344832 Msa0368550:intron 30.0%
AGAAAACTGGCTAAATCTTT+AGG + chr3_1:65344840-65344859 Msa0368550:intron 30.0%
!! ATGTTTCTGATTGGTTTCTT+TGG + chr3_1:65344953-65344972 Msa0368550:intron 30.0%
TCTTTGGACATTCTTAACAT+AGG + chr3_1:65344969-65344988 Msa0368550:intron 30.0%
CTTTGGACATTCTTAACATA+GGG + chr3_1:65344970-65344989 Msa0368550:intron 30.0%
TTGGACTGAACAAAATTTCA+GGG - chr3_1:65345606-65345625 None:intergenic 30.0%
TTTGGACTGAACAAAATTTC+AGG - chr3_1:65345607-65345626 None:intergenic 30.0%
! AAATTTTGTTCAGTCCAAAC+TGG + chr3_1:65345608-65345627 Msa0368550:CDS 30.0%
AATGAGAAGGTTATCATGTA+AGG + chr3_1:65345675-65345694 Msa0368550:CDS 30.0%
GCGATTTAAGAAGTTGAAGA+TGG - chr3_1:65340373-65340392 None:intergenic 35.0%
TCTTCAACTTCTTAAATCGC+AGG + chr3_1:65340373-65340392 Msa0368550:five_prime_UTR 35.0%
!!! CGCGTTTTGAAGTGAAATTA+GGG - chr3_1:65340551-65340570 None:intergenic 35.0%
CCTAATTTCACTTCAAAACG+CGG + chr3_1:65340549-65340568 Msa0368550:intron 35.0%
GATGAAGAAAAAGATACCTG+TGG - chr3_1:65340719-65340738 None:intergenic 35.0%
! TCAAAGTACTTCAACAATGC+TGG - chr3_1:65340924-65340943 None:intergenic 35.0%
!! GATGTTGTGACCTATTTTGA+TGG + chr3_1:65341077-65341096 Msa0368550:intron 35.0%
GATCAACAACTAAACAACAC+AGG - chr3_1:65341213-65341232 None:intergenic 35.0%
TGAAGTGAGACAATAAGGTT+TGG + chr3_1:65341458-65341477 Msa0368550:intron 35.0%
TTCATAACAACTAGTTAGGG+AGG + chr3_1:65341531-65341550 Msa0368550:intron 35.0%
! GTTGTTTCATCTTCAGATTC+TGG + chr3_1:65341659-65341678 Msa0368550:intron 35.0%
!! GACTTTGCTTTTGATCGAAT+GGG + chr3_1:65341681-65341700 Msa0368550:CDS 35.0%
GATGTTCTCATAAGCTATCT+TGG + chr3_1:65341947-65341966 Msa0368550:intron 35.0%
TCAAATAAGTCCATCCAAAC+AGG + chr3_1:65342071-65342090 Msa0368550:intron 35.0%
ACTTATGGAGTTCCATCTAT+AGG + chr3_1:65342337-65342356 Msa0368550:CDS 35.0%
AAGGCTCTTGTAAAAGATCA+AGG - chr3_1:65342396-65342415 None:intergenic 35.0%
ATGTCACAAGATGTCAAACA+TGG - chr3_1:65342524-65342543 None:intergenic 35.0%
TATCACAAACACTTCGTTGT+TGG - chr3_1:65342694-65342713 None:intergenic 35.0%
! CGAAGTGTTTGTGATAAAGA+TGG + chr3_1:65342698-65342717 Msa0368550:intron 35.0%
TGGGATAGGATTAGAAATGA+CGG + chr3_1:65342816-65342835 Msa0368550:intron 35.0%
AGCACCTATAGTTGAAAAGA+TGG + chr3_1:65342932-65342951 Msa0368550:intron 35.0%
ACCTATAGTTGAAAAGATGG+TGG + chr3_1:65342935-65342954 Msa0368550:intron 35.0%
CCTATAGTTGAAAAGATGGT+GGG + chr3_1:65342936-65342955 Msa0368550:intron 35.0%
AATAAGGAGAGTAGATCAGA+TGG + chr3_1:65343010-65343029 Msa0368550:intron 35.0%
! TAATGAGTTGGACCGAAATA+TGG + chr3_1:65343097-65343116 Msa0368550:intron 35.0%
TAACACTTTACACATTTGGC+AGG - chr3_1:65343444-65343463 None:intergenic 35.0%
CGACAGCTTCCTTTATAAAT+TGG - chr3_1:65343532-65343551 None:intergenic 35.0%
AATACAGGGCTAGATTTACA+TGG + chr3_1:65343706-65343725 Msa0368550:intron 35.0%
ATACAGGGCTAGATTTACAT+GGG + chr3_1:65343707-65343726 Msa0368550:intron 35.0%
CATAACAATGTTCCATCTTC+AGG - chr3_1:65343746-65343765 None:intergenic 35.0%
ACAGTAGAAAAACTTAGACG+GGG - chr3_1:65343827-65343846 None:intergenic 35.0%
TTATACGCCATTTAATGGTC+TGG + chr3_1:65343856-65343875 Msa0368550:intron 35.0%
CCGAAGAAAAAACCAAAATG+TGG + chr3_1:65343898-65343917 Msa0368550:CDS 35.0%
GGAAAATGAATTACGTGGTT+TGG + chr3_1:65344061-65344080 Msa0368550:intron 35.0%
GTATACGCTTATAAACATCC+CGG + chr3_1:65344265-65344284 Msa0368550:CDS 35.0%
GAAGCTACAAGCATATTTGA+AGG - chr3_1:65344383-65344402 None:intergenic 35.0%
GCAAAGTTGACAATGTTTGT+TGG + chr3_1:65344484-65344503 Msa0368550:intron 35.0%
CTATGAAGAGGAATTGGAAA+GGG + chr3_1:65344596-65344615 Msa0368550:CDS 35.0%
AATTGAAGCATGGAACATAC+AGG - chr3_1:65344653-65344672 None:intergenic 35.0%
TGGTATTCAGCTTAGTGAAA+TGG + chr3_1:65344724-65344743 Msa0368550:intron 35.0%
GGTATTCAGCTTAGTGAAAT+GGG + chr3_1:65344725-65344744 Msa0368550:intron 35.0%
GCTTACTAAGTTCCTTAATG+GGG + chr3_1:65344814-65344833 Msa0368550:intron 35.0%
CTTACTAAGTTCCTTAATGG+GGG + chr3_1:65344815-65344834 Msa0368550:intron 35.0%
ATTGTTCCAAGTAAAGCTCT+GGG - chr3_1:65345000-65345019 None:intergenic 35.0%
AATTGTTCCAAGTAAAGCTC+TGG - chr3_1:65345001-65345020 None:intergenic 35.0%
!!! TTGTTTTGAGTCGTTTACGT+TGG - chr3_1:65345060-65345079 None:intergenic 35.0%
CGTAAACGACTCAAAACAAA+TGG + chr3_1:65345061-65345080 Msa0368550:CDS 35.0%
AAACGACTCAAAACAAATGG+AGG + chr3_1:65345064-65345083 Msa0368550:CDS 35.0%
ACTATTTCCATTTCCATTCG+TGG - chr3_1:65345095-65345114 None:intergenic 35.0%
GGAAATGGAAATAGTTTGAC+AGG + chr3_1:65345100-65345119 Msa0368550:intron 35.0%
AATAGTTTGACAGGTAGTGT+TGG + chr3_1:65345109-65345128 Msa0368550:intron 35.0%
AAGTTGCCAATCTTCATCTT+TGG - chr3_1:65345230-65345249 None:intergenic 35.0%
! AGGTCGAGTCTTTTATAATG+TGG + chr3_1:65345343-65345362 Msa0368550:intron 35.0%
!!! AACACGGCTAATTTTAGGTT+AGG - chr3_1:65345371-65345390 None:intergenic 35.0%
CATGAGAGTTCTTTGATACA+AGG - chr3_1:65345427-65345446 None:intergenic 35.0%
! ATCCTGTTGATATGTTGGTT+TGG + chr3_1:65345455-65345474 Msa0368550:intron 35.0%
TACCAAACCAACATATCAAC+AGG - chr3_1:65345460-65345479 None:intergenic 35.0%
!! TGTTGATATGTTGGTTTGGT+AGG + chr3_1:65345459-65345478 Msa0368550:intron 35.0%
TGAAAATCTTCTTTGGTGAG+CGG - chr3_1:65345553-65345572 None:intergenic 35.0%
! AGATTGTTTTCGGAGTTGAA+AGG + chr3_1:65345572-65345591 Msa0368550:CDS 35.0%
! TTTTCGGAGTTGAAAGGTTT+AGG + chr3_1:65345578-65345597 Msa0368550:CDS 35.0%
ATCATGTAAGGATGAAAAGC+TGG + chr3_1:65345687-65345706 Msa0368550:CDS 35.0%
ACTAATTCCATACTTGTGAC+TGG + chr3_1:65345721-65345740 Msa0368550:CDS 35.0%
! AATAGTTAGAGCACTTGATC+CGG + chr3_1:65345825-65345844 Msa0368550:CDS 35.0%
TGGAAAGTTAGTTAGATTGC+TGG - chr3_1:65346056-65346075 None:intergenic 35.0%
AAGAGTCTAAGTAGCAGACA+TGG - chr3_1:65340345-65340364 None:intergenic 40.0%
!! TTTGGAGATGAAAGGCATTG+TGG - chr3_1:65340432-65340451 None:intergenic 40.0%
!! CGTTGGATTTTGGAGATGAA+AGG - chr3_1:65340440-65340459 None:intergenic 40.0%
TGAAGCGATTGTAATCGGAT+TGG - chr3_1:65340463-65340482 None:intergenic 40.0%
GGAACTGAAGCGATTGTAAT+CGG - chr3_1:65340468-65340487 None:intergenic 40.0%
! AGAGTACCCAATACGGAAAT+AGG - chr3_1:65340522-65340541 None:intergenic 40.0%
!! GTTTGAGAGAGTACCCAATA+CGG - chr3_1:65340529-65340548 None:intergenic 40.0%
!!! CCGCGTTTTGAAGTGAAATT+AGG - chr3_1:65340552-65340571 None:intergenic 40.0%
!! TGGTGAATTTTTAGATGGGC+TGG + chr3_1:65340637-65340656 Msa0368550:intron 40.0%
ATGTTGCGAAAAACAACACG+AGG - chr3_1:65340673-65340692 None:intergenic 40.0%
GGAGAAACTGTTACCATTGT+TGG + chr3_1:65340888-65340907 Msa0368550:intron 40.0%
ACTTCAACAATGCTGGATCA+TGG - chr3_1:65340917-65340936 None:intergenic 40.0%
TACTTTGATTGTACTCGCTC+TGG + chr3_1:65340936-65340955 Msa0368550:CDS 40.0%
TGACATGCAGCCATCAAAAT+AGG - chr3_1:65341108-65341127 None:intergenic 40.0%
CCTATCTATGGCAACAAAAC+AGG - chr3_1:65341173-65341192 None:intergenic 40.0%
!! CCTGTTTTGTTGCCATAGAT+AGG + chr3_1:65341170-65341189 Msa0368550:intron 40.0%
! ATTGCTTGTGGCGTTCATTT+TGG - chr3_1:65341239-65341258 None:intergenic 40.0%
! TTTGCTATGCGTCATGTACT+TGG + chr3_1:65341302-65341321 Msa0368550:intron 40.0%
TTGCTATGCGTCATGTACTT+GGG + chr3_1:65341303-65341322 Msa0368550:intron 40.0%
TTTGGCACGACACACTTTAA+AGG + chr3_1:65341476-65341495 Msa0368550:intron 40.0%
!! GGACTTTGCTTTTGATCGAA+TGG + chr3_1:65341680-65341699 Msa0368550:CDS 40.0%
TTTAGCAGCACACCAAAGTT+GGG - chr3_1:65342098-65342117 None:intergenic 40.0%
ATAGGATGATCAATCTGCTC+TGG - chr3_1:65342250-65342269 None:intergenic 40.0%
ACACATTCTGTGATCAGGAT+AGG - chr3_1:65342268-65342287 None:intergenic 40.0%
TGCATACACATTCTGTGATC+AGG - chr3_1:65342273-65342292 None:intergenic 40.0%
! TCAAGGCTTTTGCCATTGTA+GGG - chr3_1:65342379-65342398 None:intergenic 40.0%
! ATCAAGGCTTTTGCCATTGT+AGG - chr3_1:65342380-65342399 None:intergenic 40.0%
!! CGCTTCTGTTTCTACTACTA+AGG - chr3_1:65342415-65342434 None:intergenic 40.0%
TCATTTACGAATAGACCTGG+TGG - chr3_1:65342471-65342490 None:intergenic 40.0%
AAAGCATACCGGAATCACAT+GGG - chr3_1:65342753-65342772 None:intergenic 40.0%
! AAAAGCATACCGGAATCACA+TGG - chr3_1:65342754-65342773 None:intergenic 40.0%
! CCCACCATCTTTTCAACTAT+AGG - chr3_1:65342939-65342958 None:intergenic 40.0%
!! AGATGGTGGGAAATAAGCTT+AGG + chr3_1:65342949-65342968 Msa0368550:intron 40.0%
GGAAATAAGCTTAGGTGGTT+TGG + chr3_1:65342957-65342976 Msa0368550:intron 40.0%
! AAACCTTTTCCCACTAAGTG+GGG - chr3_1:65343166-65343185 None:intergenic 40.0%
! CAAACCTTTTCCCACTAAGT+GGG - chr3_1:65343167-65343186 None:intergenic 40.0%
! TGTTTTGCAGAGTTGCTTGT+AGG + chr3_1:65343408-65343427 Msa0368550:intron 40.0%
GACGGGGAACCAATTTATAA+AGG + chr3_1:65343520-65343539 Msa0368550:CDS 40.0%
! AGCTTGGTAATAGCAAAAGC+AGG - chr3_1:65343643-65343662 None:intergenic 40.0%
!! TACGTATTTAGGGGTTAGCT+TGG - chr3_1:65343659-65343678 None:intergenic 40.0%
GGCTAGATTTACATGGGAAA+AGG + chr3_1:65343713-65343732 Msa0368550:CDS 40.0%
AAAGGTTGAAGACCTGAAGA+TGG + chr3_1:65343731-65343750 Msa0368550:CDS 40.0%
GGAACATTGTTATGTTGCAC+AGG + chr3_1:65343752-65343771 Msa0368550:CDS 40.0%
TTCAGAAGCTCGATTGTTTC+TGG + chr3_1:65343782-65343801 Msa0368550:CDS 40.0%
CTTTCTGCCAGACCATTAAA+TGG - chr3_1:65343866-65343885 None:intergenic 40.0%
CATTTAATGGTCTGGCAGAA+AGG + chr3_1:65343864-65343883 Msa0368550:intron 40.0%
TAAGGGAGAAACAAGGTCAA+AGG + chr3_1:65343991-65344010 Msa0368550:CDS 40.0%
GAGCTGGAAAATGAATTACG+TGG + chr3_1:65344056-65344075 Msa0368550:CDS 40.0%
AGGACTGCACAACTTTACTA+CGG - chr3_1:65344184-65344203 None:intergenic 40.0%
! ATTTGAAGGGTGTGATGACA+GGG - chr3_1:65344369-65344388 None:intergenic 40.0%
! TATTTGAAGGGTGTGATGAC+AGG - chr3_1:65344370-65344389 None:intergenic 40.0%
TTAAATCTATGTCCGATGGG+AGG + chr3_1:65344553-65344572 Msa0368550:CDS 40.0%
!! AAAACAGAAGCGCTATGAAG+AGG + chr3_1:65344584-65344603 Msa0368550:CDS 40.0%
GCTATGAAGAGGAATTGGAA+AGG + chr3_1:65344595-65344614 Msa0368550:CDS 40.0%
AAGAGGAATTGGAAAGGGAA+AGG + chr3_1:65344601-65344620 Msa0368550:CDS 40.0%
AAGGAAACAACAGCTAGAAG+AGG + chr3_1:65344620-65344639 Msa0368550:CDS 40.0%
ATATTCATGCGAGCAAGAGA+TGG + chr3_1:65344704-65344723 Msa0368550:intron 40.0%
!! CTGGCTAAATCTTTAGGACA+AGG + chr3_1:65344846-65344865 Msa0368550:intron 40.0%
ACAATTGCGTGCCAAATACA+AGG + chr3_1:65345015-65345034 Msa0368550:CDS 40.0%
TGCCAAATACAAGGACCTTT+CGG + chr3_1:65345024-65345043 Msa0368550:CDS 40.0%
! GTTGGTCAATTTTCTCCGAA+AGG - chr3_1:65345042-65345061 None:intergenic 40.0%
ATTTCCATTTCCATTCGTGG+AGG - chr3_1:65345092-65345111 None:intergenic 40.0%
!! TTGGTGCCAAAGATGAAGAT+TGG + chr3_1:65345221-65345240 Msa0368550:CDS 40.0%
ATAAAAGACTCGACCTAACC+TGG - chr3_1:65345339-65345358 None:intergenic 40.0%
! CACACAACACGGCTAATTTT+AGG - chr3_1:65345376-65345395 None:intergenic 40.0%
ACCAACACATACACACAACA+CGG - chr3_1:65345387-65345406 None:intergenic 40.0%
! GTTGTGTGTATGTGTTGGTA+TGG + chr3_1:65345388-65345407 Msa0368550:intron 40.0%
!! TATGTTGGTTTGGTAGGACT+TGG + chr3_1:65345465-65345484 Msa0368550:intron 40.0%
TTGTTCAGTCCAAACTGGAT+TGG + chr3_1:65345613-65345632 Msa0368550:CDS 40.0%
TGATCAACTCCAATCCAGTT+TGG - chr3_1:65345625-65345644 None:intergenic 40.0%
! AAACTGGATTGGAGTTGATC+AGG + chr3_1:65345624-65345643 Msa0368550:CDS 40.0%
AATTCCATACTTGTGACTGG+TGG + chr3_1:65345724-65345743 Msa0368550:CDS 40.0%
! ATTTTTATAGGCGAACCGCA+GGG - chr3_1:65345808-65345827 None:intergenic 40.0%
!! TATTTTTATAGGCGAACCGC+AGG - chr3_1:65345809-65345828 None:intergenic 40.0%
ATGTTTGTGTGTGGAAACCA+GGG - chr3_1:65345891-65345910 None:intergenic 40.0%
AATGTTTGTGTGTGGAAACC+AGG - chr3_1:65345892-65345911 None:intergenic 40.0%
TCCACACACAAACATTCACT+AGG + chr3_1:65345896-65345915 Msa0368550:CDS 40.0%
TCCTAGTGAATGTTTGTGTG+TGG - chr3_1:65345900-65345919 None:intergenic 40.0%
CACACAAACATTCACTAGGA+TGG + chr3_1:65345900-65345919 Msa0368550:CDS 40.0%
TCCATATTGTTGCTGAAGCT+AGG + chr3_1:65346072-65346091 Msa0368550:three_prime_UTR 40.0%
TCCTAGCTTCAGCAACAATA+TGG - chr3_1:65346076-65346095 None:intergenic 40.0%
TTTCATTCTCCTCTCATGTG+AGG + chr3_1:65346184-65346203 Msa0368550:three_prime_UTR 40.0%
ACTTTAACAACCCACCCGAT+CGG + chr3_1:65340308-65340327 Msa0368550:five_prime_UTR 45.0%
!! AAGGCATTGTGGAAGTGAAG+AGG - chr3_1:65340421-65340440 None:intergenic 45.0%
!!! ATCGGATTGGCGTTGGATTT+TGG - chr3_1:65340450-65340469 None:intergenic 45.0%
!! GATTGTAATCGGATTGGCGT+TGG - chr3_1:65340457-65340476 None:intergenic 45.0%
ATTGTCGATAACGATGGGAG+TGG - chr3_1:65340492-65340511 None:intergenic 45.0%
ACTCCCATCGTTATCGACAA+TGG + chr3_1:65340491-65340510 Msa0368550:CDS 45.0%
GCGCTTCCTATTTCCGTATT+GGG + chr3_1:65340513-65340532 Msa0368550:CDS 45.0%
!! ATACCTGTGGCTTTATGTCG+TGG - chr3_1:65340706-65340725 None:intergenic 45.0%
TGGATCATGGTCACCAACAA+TGG - chr3_1:65340904-65340923 None:intergenic 45.0%
TGATGGCTGCATGTCAGAAT+TGG + chr3_1:65341112-65341131 Msa0368550:intron 45.0%
! CGACACACTTTAAAGGTTGC+AGG + chr3_1:65341483-65341502 Msa0368550:intron 45.0%
! CACACTTTAAAGGTTGCAGG+TGG + chr3_1:65341486-65341505 Msa0368550:intron 45.0%
TTTGATCGAATGGGTGCAAC+AGG + chr3_1:65341690-65341709 Msa0368550:CDS 45.0%
ATCCAAACAGGACCTACCAT+TGG - chr3_1:65341813-65341832 None:intergenic 45.0%
TTAGCAGCACACCAAAGTTG+GGG - chr3_1:65342097-65342116 None:intergenic 45.0%
GTTTAGCAGCACACCAAAGT+TGG - chr3_1:65342099-65342118 None:intergenic 45.0%
! CTTTGGTGTGCTGCTAAACT+TGG + chr3_1:65342100-65342119 Msa0368550:intron 45.0%
!! ATCGTGTGGTGTTGTTACCT+TGG + chr3_1:65342126-65342145 Msa0368550:intron 45.0%
!! TGGTGTTGTTACCTTGGACT+TGG + chr3_1:65342132-65342151 Msa0368550:intron 45.0%
AAGATTGGGCATAAGGCAAC+AGG - chr3_1:65342446-65342465 None:intergenic 45.0%
! TAGACCTGGTGGTGAAGATT+GGG - chr3_1:65342460-65342479 None:intergenic 45.0%
! ATAGACCTGGTGGTGAAGAT+TGG - chr3_1:65342461-65342480 None:intergenic 45.0%
TGGTAAAGACGAGATGGGAT+AGG + chr3_1:65342802-65342821 Msa0368550:intron 45.0%
AGAGAGAGAGAGAGAGAGTT+GGG + chr3_1:65342907-65342926 Msa0368550:intron 45.0%
TGGTGGGAAATAAGCTTAGG+TGG + chr3_1:65342952-65342971 Msa0368550:intron 45.0%
! CCAAACCTTTTCCCACTAAG+TGG - chr3_1:65343168-65343187 None:intergenic 45.0%
CCACTTAGTGGGAAAAGGTT+TGG + chr3_1:65343165-65343184 Msa0368550:intron 45.0%
GGAAGCTGTCGCACTAATAT+TGG + chr3_1:65343541-65343560 Msa0368550:CDS 45.0%
AGCTGTCGCACTAATATTGG+TGG + chr3_1:65343544-65343563 Msa0368550:CDS 45.0%
CAAAATGTGGCAGCTCCATT+GGG + chr3_1:65343911-65343930 Msa0368550:CDS 45.0%
TGAGGAAGAGATTGCGAGAA+AGG + chr3_1:65343962-65343981 Msa0368550:CDS 45.0%
TTGCGAGAAAGGCAGCAATA+AGG + chr3_1:65343973-65343992 Msa0368550:CDS 45.0%
TGCGAGAAAGGCAGCAATAA+GGG + chr3_1:65343974-65343993 Msa0368550:CDS 45.0%
GCAGCAATAAGGGAGAAACA+AGG + chr3_1:65343984-65344003 Msa0368550:CDS 45.0%
AGGTCAAAGGTTGCGAGAAA+TGG + chr3_1:65344004-65344023 Msa0368550:CDS 45.0%
ATAGCCAGTCTCTGCTAAGA+AGG - chr3_1:65344135-65344154 None:intergenic 45.0%
GGACTGCACAACTTTACTAC+GGG - chr3_1:65344183-65344202 None:intergenic 45.0%
GTAAAGTTGTGCAGTCCTTG+CGG + chr3_1:65344186-65344205 Msa0368550:CDS 45.0%
CAGTCCTTGCGGAAACAAAA+AGG + chr3_1:65344197-65344216 Msa0368550:CDS 45.0%
!! CTCACCTTTTTGTTTCCGCA+AGG - chr3_1:65344204-65344223 None:intergenic 45.0%
! TTTTAATCGCTGCCTCCCAT+CGG - chr3_1:65344568-65344587 None:intergenic 45.0%
! GAAGCGCTATGAAGAGGAAT+TGG + chr3_1:65344590-65344609 Msa0368550:CDS 45.0%
! CAGTTTTCTCTCCCCCATTA+AGG - chr3_1:65344829-65344848 None:intergenic 45.0%
CTTAATGGGGGAGAGAAAAC+TGG + chr3_1:65344827-65344846 Msa0368550:intron 45.0%
GCACGACTTCAATCTTGACA+AGG + chr3_1:65344885-65344904 Msa0368550:intron 45.0%
CTCCGAAAGGTCCTTGTATT+TGG - chr3_1:65345029-65345048 None:intergenic 45.0%
AGCTCTGTGTTATCCTCATC+TGG - chr3_1:65345295-65345314 None:intergenic 45.0%
TCTACCTTGGGCACAAATGT+TGG - chr3_1:65345493-65345512 None:intergenic 45.0%
! TGGGAGCTACTTTCTACCTT+GGG - chr3_1:65345505-65345524 None:intergenic 45.0%
! TTGGGAGCTACTTTCTACCT+TGG - chr3_1:65345506-65345525 None:intergenic 45.0%
! TGGATTGGAGTTGATCAGGT+GGG + chr3_1:65345628-65345647 Msa0368550:CDS 45.0%
TAACCTTCTCATTGAGACCC+CGG - chr3_1:65345668-65345687 None:intergenic 45.0%
ATTCGGATGATTAGACCCTG+CGG + chr3_1:65345790-65345809 Msa0368550:CDS 45.0%
! TAGAGCACTTGATCCGGTTA+TGG + chr3_1:65345831-65345850 Msa0368550:CDS 45.0%
TTGATCCGGTTATGGATGCA+TGG + chr3_1:65345839-65345858 Msa0368550:CDS 45.0%
TGTTTGTGTGTGGAAACCAG+GGG - chr3_1:65345890-65345909 None:intergenic 45.0%
!! TAAAAAACTAAAATAAAAAA+TGG + chr3_1:65343323-65343342 Msa0368550:intron 5.0%
CTTTAACAACCCACCCGATC+GGG + chr3_1:65340309-65340328 Msa0368550:five_prime_UTR 50.0%
GCGCCATTGTCGATAACGAT+GGG - chr3_1:65340497-65340516 None:intergenic 50.0%
AGCGCCATTGTCGATAACGA+TGG - chr3_1:65340498-65340517 None:intergenic 50.0%
GGCGCTTCCTATTTCCGTAT+TGG + chr3_1:65340512-65340531 Msa0368550:CDS 50.0%
TCGCTTTCGAATGCTGATCG+TGG - chr3_1:65340963-65340982 None:intergenic 50.0%
GAATGGGTGCAACAGGATCA+GGG + chr3_1:65341697-65341716 Msa0368550:CDS 50.0%
AATGGGTGCAACAGGATCAG+GGG + chr3_1:65341698-65341717 Msa0368550:CDS 50.0%
CTCCAATGGTAGGTCCTGTT+TGG + chr3_1:65341808-65341827 Msa0368550:intron 50.0%
AAAGTTGGGGCCTGTTTGGA+TGG - chr3_1:65342084-65342103 None:intergenic 50.0%
ATCCAAACAGGCCCCAACTT+TGG + chr3_1:65342083-65342102 Msa0368550:intron 50.0%
! TGGTGTGCTGCTAAACTTGG+TGG + chr3_1:65342103-65342122 Msa0368550:intron 50.0%
! GCTAAACTTGGTGGATCGTG+TGG + chr3_1:65342112-65342131 Msa0368550:intron 50.0%
ACCTTGGACTTGGAGTTCCT+TGG + chr3_1:65342142-65342161 Msa0368550:intron 50.0%
ACCAAGGAACTCCAAGTCCA+AGG - chr3_1:65342146-65342165 None:intergenic 50.0%
GGTGGTGAAGATTGGGCATA+AGG - chr3_1:65342453-65342472 None:intergenic 50.0%
TATGCCCAATCTTCACCACC+AGG + chr3_1:65342453-65342472 Msa0368550:intron 50.0%
! TTTTCTGCCATGCCAGCCTT+TGG + chr3_1:65342638-65342657 Msa0368550:intron 50.0%
GAATGCTGCGTCAACACCAA+AGG - chr3_1:65342657-65342676 None:intergenic 50.0%
! GATGGTCTTGCTATGTGTCC+TGG + chr3_1:65342716-65342735 Msa0368550:intron 50.0%
! ACATGGGTTGTAGCGAATCC+AGG - chr3_1:65342737-65342756 None:intergenic 50.0%
CGCTACAACCCATGTGATTC+CGG + chr3_1:65342742-65342761 Msa0368550:intron 50.0%
GAGAGAGAGAGAGAGAGAGT+TGG + chr3_1:65342906-65342925 Msa0368550:intron 50.0%
! CTTTTCCCACTAAGTGGGGT+CGG - chr3_1:65343162-65343181 None:intergenic 50.0%
! CCAATGGAGCTGCCACATTT+TGG - chr3_1:65343913-65343932 None:intergenic 50.0%
CCAAAATGTGGCAGCTCCAT+TGG + chr3_1:65343910-65343929 Msa0368550:CDS 50.0%
GCAATCTCTTCCTCAGAAGG+AGG - chr3_1:65343957-65343976 None:intergenic 50.0%
CTCGCAATCTCTTCCTCAGA+AGG - chr3_1:65343960-65343979 None:intergenic 50.0%
AAGGTTGCGAGAAATGGCTG+AGG + chr3_1:65344010-65344029 Msa0368550:CDS 50.0%
CGATCCTTCTTAGCAGAGAC+TGG + chr3_1:65344128-65344147 Msa0368550:CDS 50.0%
! CAGAGACTGGCTATGTCTCT+AGG + chr3_1:65344141-65344160 Msa0368550:CDS 50.0%
TTCTCATTAGACGCAGCGTC+AGG - chr3_1:65344245-65344264 None:intergenic 50.0%
GGAGAACCCAGAGCTTTACT+TGG + chr3_1:65344991-65345010 Msa0368550:CDS 50.0%
!! TTGACAGGTAGTGTTGGTCG+TGG + chr3_1:65345115-65345134 Msa0368550:intron 50.0%
! AGAGACTCAGTGCTGCTCAA+AGG + chr3_1:65345140-65345159 Msa0368550:CDS 50.0%
! GAGACTCAGTGCTGCTCAAA+GGG + chr3_1:65345141-65345160 Msa0368550:CDS 50.0%
GATCAAAGGCAGCAGTTGTC+AGG - chr3_1:65345180-65345199 None:intergenic 50.0%
ACAACTGCTGCCTTTGATCG+TGG + chr3_1:65345181-65345200 Msa0368550:CDS 50.0%
TGCTGCCTTTGATCGTGGTA+AGG + chr3_1:65345186-65345205 Msa0368550:CDS 50.0%
GCTGCCTTTGATCGTGGTAA+GGG + chr3_1:65345187-65345206 Msa0368550:CDS 50.0%
GGTAAGGGCGAGGATACATT+TGG + chr3_1:65345202-65345221 Msa0368550:CDS 50.0%
CGATGACGATGAACCAGATG+AGG + chr3_1:65345279-65345298 Msa0368550:CDS 50.0%
TCTCTTCAAGGCTCCAGGTT+AGG + chr3_1:65345323-65345342 Msa0368550:intron 50.0%
GCCGTGTTGTGTGTATGTGT+TGG + chr3_1:65345383-65345402 Msa0368550:intron 50.0%
GGATCCAACATTTGTGCCCA+AGG + chr3_1:65345486-65345505 Msa0368550:CDS 50.0%
! CTGGATTGGAGTTGATCAGG+TGG + chr3_1:65345627-65345646 Msa0368550:CDS 50.0%
! GGATTGGAGTTGATCAGGTG+GGG + chr3_1:65345629-65345648 Msa0368550:CDS 50.0%
TCAGGTGGGGTTAGATGAGA+TGG + chr3_1:65345642-65345661 Msa0368550:CDS 50.0%
GCTTCCACCAGTCACAAGTA+TGG - chr3_1:65345731-65345750 None:intergenic 50.0%
ATCATTGAACGCCTGGAAGC+TGG + chr3_1:65345766-65345785 Msa0368550:CDS 50.0%
AACGCCTGGAAGCTGGAATT+CGG + chr3_1:65345773-65345792 Msa0368550:CDS 50.0%
TCATCCGAATTCCAGCTTCC+AGG - chr3_1:65345780-65345799 None:intergenic 50.0%
GTCGATAACGATGGGAGTGG+TGG - chr3_1:65340489-65340508 None:intergenic 55.0%
CGAATGGGTGCAACAGGATC+AGG + chr3_1:65341696-65341715 Msa0368550:CDS 55.0%
GTGCAACAGGATCAGGGGTA+TGG + chr3_1:65341703-65341722 Msa0368550:intron 55.0%
CACCAAAGTTGGGGCCTGTT+TGG - chr3_1:65342088-65342107 None:intergenic 55.0%
GTCAACACCAAAGGCTGGCA+TGG - chr3_1:65342648-65342667 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr3_1:65343154-65343173 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr3_1:65343153-65343172 Msa0368550:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr3_1:65343154-65343173 Msa0368550:intron 55.0%
CGACCCCACTTAGTGGGAAA+AGG + chr3_1:65343160-65343179 Msa0368550:intron 55.0%
GGTCTGGCAGAAAGGAGCTA+AGG + chr3_1:65343872-65343891 Msa0368550:intron 55.0%
CTGGCAGAAAGGAGCTAAGG+AGG + chr3_1:65343875-65343894 Msa0368550:intron 55.0%
TCAGAAGGAGGCTCCTCAAC+TGG - chr3_1:65343945-65343964 None:intergenic 55.0%
AGTTGAGGAGCCTCCTTCTG+AGG + chr3_1:65343944-65343963 Msa0368550:CDS 55.0%
GAGAAATGGCTGAGGCGAAG+AGG + chr3_1:65344018-65344037 Msa0368550:CDS 55.0%
! GACTGGCTATGTCTCTAGGC+AGG + chr3_1:65344145-65344164 Msa0368550:CDS 55.0%
CATCCCGGATGACATGCTGA+CGG + chr3_1:65344280-65344299 Msa0368550:CDS 55.0%
TCTGCCGTCAGCATGTCATC+CGG - chr3_1:65344287-65344306 None:intergenic 55.0%
AATGGAGGCTCCTCCACGAA+TGG + chr3_1:65345079-65345098 Msa0368550:CDS 55.0%
GGCTCCTCCACGAATGGAAA+TGG + chr3_1:65345085-65345104 Msa0368550:CDS 55.0%
CAAAGGCAGCAGTTGTCAGG+AGG - chr3_1:65345177-65345196 None:intergenic 55.0%
CTCGCCCTTACCACGATCAA+AGG - chr3_1:65345194-65345213 None:intergenic 55.0%
CTTTGATCGTGGTAAGGGCG+AGG + chr3_1:65345192-65345211 Msa0368550:CDS 55.0%
AGCTTGCCCGCATCTCTTCA+AGG + chr3_1:65345311-65345330 Msa0368550:CDS 55.0%
CTGGAGCCTTGAAGAGATGC+GGG - chr3_1:65345320-65345339 None:intergenic 55.0%
CCTGGAGCCTTGAAGAGATG+CGG - chr3_1:65345321-65345340 None:intergenic 55.0%
AAGTAGCTCCCAACCTGCTG+AGG + chr3_1:65345513-65345532 Msa0368550:CDS 55.0%
GTGGGGTTAGATGAGATGGC+CGG + chr3_1:65345646-65345665 Msa0368550:CDS 55.0%
TGGGGTTAGATGAGATGGCC+GGG + chr3_1:65345647-65345666 Msa0368550:CDS 55.0%
! GGTGGAAGCTCTCTTTTCCC+TGG + chr3_1:65345742-65345761 Msa0368550:CDS 55.0%
CCAGGCGTTCAATGATGCCA+GGG - chr3_1:65345762-65345781 None:intergenic 55.0%
TCCAGGCGTTCAATGATGCC+AGG - chr3_1:65345763-65345782 None:intergenic 55.0%
CCACGCCATGCATCCATAAC+CGG - chr3_1:65345847-65345866 None:intergenic 55.0%
TCTGCTTATGCATCAGCCCC+TGG + chr3_1:65345871-65345890 Msa0368550:CDS 55.0%
AACAACCCACCCGATCGGGT+CGG + chr3_1:65340313-65340332 Msa0368550:five_prime_UTR 60.0%
CGGCCACGACATAAAGCCAC+AGG + chr3_1:65340700-65340719 Msa0368550:CDS 60.0%
GCTGCGTCAACACCAAAGGC+TGG - chr3_1:65342653-65342672 None:intergenic 60.0%
CAACTGGAGGTGGCACCCAA+TGG - chr3_1:65343929-65343948 None:intergenic 60.0%
! TTGGGTGCCACCTCCAGTTG+AGG + chr3_1:65343929-65343948 Msa0368550:CDS 60.0%
GAAGGAGGCTCCTCAACTGG+AGG - chr3_1:65343942-65343961 None:intergenic 60.0%
CTGCCGTCAGCATGTCATCC+GGG - chr3_1:65344286-65344305 None:intergenic 60.0%
TGACATGCTGACGGCAGAGC+AGG + chr3_1:65344289-65344308 Msa0368550:CDS 60.0%
CCGCATCTCTTCAAGGCTCC+AGG + chr3_1:65345318-65345337 Msa0368550:CDS 60.0%
GGGGTTAGATGAGATGGCCG+GGG + chr3_1:65345648-65345667 Msa0368550:CDS 60.0%
TGGCCGGGGTCTCAATGAGA+AGG + chr3_1:65345662-65345681 Msa0368550:CDS 60.0%
CCCTGGCATCATTGAACGCC+TGG + chr3_1:65345759-65345778 Msa0368550:CDS 60.0%
CCGGTTATGGATGCATGGCG+TGG + chr3_1:65345844-65345863 Msa0368550:CDS 60.0%
ACAACCCACCCGATCGGGTC+GGG + chr3_1:65340314-65340333 Msa0368550:five_prime_UTR 65.0%
ATGGTGAGCCCCGACCCGAT+CGG - chr3_1:65340326-65340345 None:intergenic 65.0%
GGAGGCTCCTCAACTGGAGG+TGG - chr3_1:65343939-65343958 None:intergenic 65.0%
TTGGTGAGCGGACGAACGCG+TGG - chr3_1:65345541-65345560 None:intergenic 65.0%
CAACCCACCCGATCGGGTCG+GGG + chr3_1:65340315-65340334 Msa0368550:five_prime_UTR 70.0%
TGGTGAGCCCCGACCCGATC+GGG - chr3_1:65340325-65340344 None:intergenic 70.0%
GCGTGGCGCCTCAGCAGGTT+GGG - chr3_1:65345524-65345543 None:intergenic 70.0%
GAGCCCCGACCCGATCGGGT+GGG - chr3_1:65340321-65340340 None:intergenic 75.0%
TGAGCCCCGACCCGATCGGG+TGG - chr3_1:65340322-65340341 None:intergenic 75.0%
CGCGTGGCGCCTCAGCAGGT+TGG - chr3_1:65345525-65345544 None:intergenic 75.0%
CGAACGCGTGGCGCCTCAGC+AGG - chr3_1:65345529-65345548 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 65340260 65346214 65340260 ID=Msa0368550;Name=Msa0368550
chr3_1 mRNA 65340260 65346214 65340260 ID=Msa0368550-mRNA-1;Parent=Msa0368550;Name=Msa0368550-mRNA-1;_AED=0.10;_eAED=0.10;_QI=174|0.76|0.64|1|0.92|0.85|14|233|684
chr3_1 exon 65340260 65340534 65340260 ID=Msa0368550-mRNA-1:exon:13072;Parent=Msa0368550-mRNA-1
chr3_1 exon 65340651 65340721 65340651 ID=Msa0368550-mRNA-1:exon:13073;Parent=Msa0368550-mRNA-1
chr3_1 exon 65340889 65341013 65340889 ID=Msa0368550-mRNA-1:exon:13074;Parent=Msa0368550-mRNA-1
chr3_1 exon 65341675 65341719 65341675 ID=Msa0368550-mRNA-1:exon:13075;Parent=Msa0368550-mRNA-1
chr3_1 exon 65342256 65342358 65342256 ID=Msa0368550-mRNA-1:exon:13076;Parent=Msa0368550-mRNA-1
chr3_1 exon 65342654 65342703 65342654 ID=Msa0368550-mRNA-1:exon:13077;Parent=Msa0368550-mRNA-1
chr3_1 exon 65343514 65343623 65343514 ID=Msa0368550-mRNA-1:exon:13078;Parent=Msa0368550-mRNA-1
chr3_1 exon 65343713 65343803 65343713 ID=Msa0368550-mRNA-1:exon:13079;Parent=Msa0368550-mRNA-1
chr3_1 exon 65343882 65344077 65343882 ID=Msa0368550-mRNA-1:exon:13080;Parent=Msa0368550-mRNA-1
chr3_1 exon 65344117 65344310 65344117 ID=Msa0368550-mRNA-1:exon:13081;Parent=Msa0368550-mRNA-1
chr3_1 exon 65344525 65344652 65344525 ID=Msa0368550-mRNA-1:exon:13082;Parent=Msa0368550-mRNA-1
chr3_1 exon 65344991 65345112 65344991 ID=Msa0368550-mRNA-1:exon:13083;Parent=Msa0368550-mRNA-1
chr3_1 exon 65345122 65345339 65345122 ID=Msa0368550-mRNA-1:exon:13084;Parent=Msa0368550-mRNA-1
chr3_1 exon 65345481 65346214 65345481 ID=Msa0368550-mRNA-1:exon:13085;Parent=Msa0368550-mRNA-1
chr3_1 five_prime_UTR 65340260 65340433 65340260 ID=Msa0368550-mRNA-1:five_prime_utr;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65340434 65340534 65340434 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65340651 65340721 65340651 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65340889 65341013 65340889 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65341675 65341719 65341675 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65342256 65342358 65342256 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65342654 65342703 65342654 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65343514 65343623 65343514 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65343713 65343803 65343713 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65343882 65344077 65343882 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65344117 65344310 65344117 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65344525 65344652 65344525 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65344991 65345112 65344991 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65345122 65345339 65345122 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 CDS 65345481 65345981 65345481 ID=Msa0368550-mRNA-1:cds;Parent=Msa0368550-mRNA-1
chr3_1 three_prime_UTR 65345982 65346214 65345982 ID=Msa0368550-mRNA-1:three_prime_utr;Parent=Msa0368550-mRNA-1
Gene Sequence

>Msa0368550

ATGCCTTTCATCTCCAAAATCCAACGCCAATCCGATTACAATCGCTTCAGTTCCACCACTCCCATCGTTATCGACAATGGCGCTTCCTATTTCCGTATTGGATGGGCTGGTGAGTCTGAACCTCGTGTTGTTTTTCGCAACATTGTTCAACGGCCACGACATAAAGCCACAGGAGAAACTGTTACCATTGTTGGTGACCATGATCCAGCATTGTTGAAGTACTTTGATTGTACTCGCTCTGGACCACGATCAGCATTCGAAAGCGATGTTGTTTTTCAGTTTGAAATAATGGAATATATTCTGGACTTTGCTTTTGATCGAATGGGTGCAACAGGATCAGGGATTGATCATCCTATCCTGATCACAGAATGTGTATGCAACCCAGTTCAATCTCGAAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGTGTTGACGCAGCATTCAGCTATAAATATAACCAACAACGAAGTTTTGTTGACGGGGAACCAATTTATAAAGGAAGCTGTCGCACTAATATTGGTGGATTTCATGTGACTGATTATTTTCAGCGACTTCTTTCACTTAAATATCCTTATCATATGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATGTTGCACAGGACTATGTTTCAGAAGCTCGATTGTTTCTGAAAGGAGCTAAGGAGGCCGAAGAAAAAACCAAAATGTGGCAGCTCCATTGGGTGCCACCTCCAGTTGAGGAGCCTCCTTCTGAGGAAGAGATTGCGAGAAAGGCAGCAATAAGGGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCGAAGAGGTCATCAAAAATAAATGAGCTGGAAAATGAATTACGTGAGAGTGATGTACGATCCTTCTTAGCAGAGACTGGCTATGTCTCTAGGCAGGAAGTAGAATCTGCCCGTAGTAAAGTTGTGCAGTCCTTGCGGAAACAAAAAGGTGAGCAAACTGAAATTGAAAAACCTGACGCTGCGTCTAATGAGAAGTATACGCTTATAAACATCCCGGATGACATGCTGACGGCAGAGCAGCTTGTTGAAAAGAGGAAACAGCTGTCAATTAAATCTATGTCCGATGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAAAGGGAAAGGAAACAACAGCTAGAAGAGGAGAGACGCCTGGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAATACAAGGACCTTTCGGAGAAAATTGACCAACGTAAACGACTCAAAACAAATGGAGGCTCCTCCACGAATGGAAATGGAAATAGTAGTGTTGGTCGTGGTGAGAGACTCAGTGCTGCTCAAAGGGAGAGAATGCGCCTCCTGACAACTGCTGCCTTTGATCGTGGTAAGGGCGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGCAAAGATAATGATGACGATGACGATGAACCAGATGAGGATAACACAGAGCTTGCCCGCATCTCTTCAAGGCTCCAGGACTTGGATCCAACATTTGTGCCCAAGGTAGAAAGTAGCTCCCAACCTGCTGAGGCGCCACGCGTTCGTCCGCTCACCAAAGAAGATTTTCAGATTGTTTTCGGAGTTGAAAGGTTTAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGAGTTGATCAGGTGGGGTTAGATGAGATGGCCGGGGTCTCAATGAGAAGGTTATCATGTAAGGATGAAAAGCTGGAACAGAGAATGACTAATTCCATACTTGTGACTGGTGGAAGCTCTCTTTTCCCTGGCATCATTGAACGCCTGGAAGCTGGAATTCGGATGATTAGACCCTGCGGTTCGCCTATAAAAATAGTTAGAGCACTTGATCCGGTTATGGATGCATGGCGTGGTGCGTCTGCTTATGCATCAGCCCCTGGTTTCCACACACAAACATTCACTAGGATGGATTATTATGAAAAAGGTGAAGATTGGCTTCGTAATTATCAACTGAAATATTCATTGTAA
Protein sequence

>Msa0368550

MPFISKIQRQSDYNRFSSTTPIVIDNGASYFRIGWAGESEPRVVFRNIVQRPRHKATGETVTIVGDHDPALLKYFDCTRSGPRSAFESDVVFQFEIMEYILDFAFDRMGATGSGIDHPILITECVCNPVQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQRSFVDGEPIYKGSCRTNIGGFHVTDYFQRLLSLKYPYHMARFTWEKVEDLKMEHCYVAQDYVSEARLFLKGAKEAEEKTKMWQLHWVPPPVEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSKINELENELRESDVRSFLAETGYVSRQEVESARSKVVQSLRKQKGEQTEIEKPDAASNEKYTLINIPDDMLTAEQLVEKRKQLSIKSMSDGRQRLKQKRYEEELERERKQQLEEERRLENPELYLEQLRAKYKDLSEKIDQRKRLKTNGGSSTNGNGNSSVGRGERLSAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDDEPDEDNTELARISSRLQDLDPTFVPKVESSSQPAEAPRVRPLTKEDFQIVFGVERFRCPEILFSPNWIGVDQVGLDEMAGVSMRRLSCKDEKLEQRMTNSILVTGGSSLFPGIIERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGASAYASAPGFHTQTFTRMDYYEKGEDWLRNYQLKYSL*