AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0507930

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507930 MtrunA17_Chr3g0111971 94.306 720 5 3 1 684 1 720 0.0 1378
Msa0507930 MtrunA17_Chr3g0129641 31.325 249 136 10 21 247 9 244 7.66e-19 89.0
Msa0507930 MtrunA17_Chr3g0129641 34.426 122 77 2 550 671 250 368 8.88e-16 79.7
Msa0507930 MtrunA17_Chr6g0448881 31.416 226 124 9 21 224 9 225 1.49e-18 88.2
Msa0507930 MtrunA17_Chr6g0448881 31.967 122 80 2 550 671 250 368 5.99e-15 77.4
Msa0507930 MtrunA17_Chr2g0305361 36.620 142 85 2 530 671 292 428 2.32e-18 88.2
Msa0507930 MtrunA17_Chr7g0258721 30.488 246 142 9 21 247 9 244 3.56e-18 87.0
Msa0507930 MtrunA17_Chr7g0258721 34.426 122 77 2 550 671 250 368 1.32e-15 79.3
Msa0507930 MtrunA17_Chr2g0278591 30.973 226 125 9 21 224 9 225 3.69e-18 87.0
Msa0507930 MtrunA17_Chr2g0278591 34.426 122 77 2 550 671 250 368 1.23e-15 79.3
Msa0507930 MtrunA17_Chr7g0223901 30.120 249 139 10 21 247 9 244 4.51e-18 86.7
Msa0507930 MtrunA17_Chr7g0223901 33.607 122 78 2 550 671 250 368 3.99e-15 77.8
Msa0507930 MtrunA17_Chr1g0175391 30.973 226 125 9 21 224 9 225 2.60e-17 84.3
Msa0507930 MtrunA17_Chr1g0175391 33.607 122 78 2 550 671 250 368 3.21e-15 78.2
Msa0507930 MtrunA17_Chr2g0328091 30.531 226 126 9 21 224 9 225 9.88e-17 82.8
Msa0507930 MtrunA17_Chr2g0328091 33.607 122 78 2 550 671 250 368 7.01e-16 80.1
Msa0507930 MtrunA17_Chr7g0224401 26.471 238 146 5 18 233 3 233 2.01e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0507930 AT3G12380.1 69.475 724 178 6 1 683 1 722 0.0 1008
Msa0507930 AT3G12380.2 68.904 730 178 7 1 683 1 728 0.0 1001
Msa0507930 AT2G42100.1 31.602 231 121 9 19 224 8 226 3.08e-19 90.9
Msa0507930 AT2G42100.1 33.607 122 78 2 550 671 251 369 1.58e-14 76.3
Msa0507930 AT3G53750.1 31.325 249 136 10 21 247 9 244 3.28e-19 90.5
Msa0507930 AT3G53750.1 32.787 122 79 2 550 671 250 368 7.76e-15 77.4
Msa0507930 AT3G53750.2 31.325 249 136 10 21 247 9 244 3.28e-19 90.5
Msa0507930 AT3G53750.2 32.787 122 79 2 550 671 250 368 7.76e-15 77.4
Msa0507930 AT2G37620.1 31.325 249 136 10 21 247 9 244 3.28e-19 90.5
Msa0507930 AT2G37620.1 32.787 122 79 2 550 671 250 368 7.76e-15 77.4
Msa0507930 AT2G37620.3 31.325 249 136 10 21 247 9 244 3.28e-19 90.5
Msa0507930 AT2G37620.3 32.787 122 79 2 550 671 250 368 7.76e-15 77.4
Msa0507930 AT2G37620.2 31.325 249 136 10 21 247 9 244 3.28e-19 90.5
Msa0507930 AT2G37620.2 32.787 122 79 2 550 671 250 368 7.76e-15 77.4
Msa0507930 AT2G37620.4 31.325 249 136 10 21 247 9 244 3.28e-19 90.5
Msa0507930 AT2G37620.4 32.787 122 79 2 550 671 250 368 7.76e-15 77.4
Msa0507930 AT5G09810.1 31.325 249 136 10 21 247 9 244 1.00e-18 89.4
Msa0507930 AT5G09810.1 34.426 122 77 2 550 671 250 368 2.00e-15 79.0
Msa0507930 AT3G12110.1 31.416 226 124 9 21 224 9 225 2.74e-18 87.8
Msa0507930 AT3G12110.1 32.787 122 79 2 550 671 250 368 8.96e-15 77.0
Msa0507930 AT3G33520.1 38.525 122 72 1 555 676 298 416 4.47e-18 87.8
Msa0507930 AT3G46520.2 29.915 234 123 9 21 227 9 228 1.00e-17 86.3
Msa0507930 AT3G46520.2 32.787 122 79 2 550 671 250 368 1.22e-13 73.6
Msa0507930 AT3G46520.1 29.915 234 123 9 21 227 9 228 1.00e-17 86.3
Msa0507930 AT3G46520.1 32.787 122 79 2 550 671 250 368 1.22e-13 73.6
Msa0507930 AT3G18780.1 31.416 226 124 9 21 224 9 225 2.84e-17 84.7
Msa0507930 AT3G18780.1 33.333 108 69 2 550 657 250 354 4.09e-13 72.0
Msa0507930 AT5G59370.2 29.487 234 124 9 21 227 9 228 3.24e-17 84.7
Msa0507930 AT5G59370.2 32.787 122 79 2 550 671 250 368 1.31e-13 73.6
Msa0507930 AT5G59370.1 29.487 234 124 9 21 227 9 228 3.24e-17 84.7
Msa0507930 AT5G59370.1 32.787 122 79 2 550 671 250 368 1.31e-13 73.6
Msa0507930 AT3G18780.2 30.303 231 120 9 21 224 9 225 3.49e-17 84.3
Msa0507930 AT3G18780.2 31.967 122 80 2 550 671 250 368 1.47e-14 76.6
Msa0507930 AT3G18780.3 30.303 231 120 9 21 224 9 225 3.49e-17 84.3
Msa0507930 AT3G18780.3 31.967 122 80 2 550 671 250 368 1.47e-14 76.6
Msa0507930 AT1G49240.1 30.303 231 120 9 21 224 9 225 3.65e-17 84.3
Msa0507930 AT1G49240.1 31.967 122 80 2 550 671 250 368 1.45e-14 76.6
Msa0507930 AT2G42090.1 28.279 244 139 10 21 247 3 227 1.49e-16 82.4
Msa0507930 AT2G42090.1 33.333 123 79 2 549 671 238 357 1.43e-12 70.1
Msa0507930 AT2G42170.5 33.607 122 78 2 550 671 104 222 3.77e-14 72.8
Msa0507930 AT2G42170.1 33.607 122 78 2 550 671 202 320 7.35e-14 73.9
Msa0507930 AT2G42170.1 33.858 127 66 5 116 227 57 180 1.79e-11 66.6
Msa0507930 AT2G42170.3 33.607 122 78 2 550 671 202 320 7.35e-14 73.9
Msa0507930 AT2G42170.3 33.858 127 66 5 116 227 57 180 1.79e-11 66.6
Msa0507930 AT3G27000.1 27.234 235 140 7 22 233 7 233 9.42e-14 73.9
Msa0507930 AT2G42170.4 35.577 104 64 2 550 653 202 302 1.03e-11 67.0
Msa0507930 AT2G42170.4 33.871 124 64 5 116 224 57 177 1.14e-11 67.0
Msa0507930 AT2G42170.2 35.577 104 64 2 550 653 202 302 1.03e-11 67.0
Msa0507930 AT2G42170.2 33.871 124 64 5 116 224 57 177 1.14e-11 67.0

Find 193 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGGATTGGCGTTGGATTT+TGG 0.159254 3_4:+55587468 None:intergenic
TTCAGAAGCTCGATTGTTTC+TGG 0.165498 3_4:-55584204 Msa0507930:intron
CGACAGCTTCCTTTATAAAT+TGG 0.189204 3_4:+55584457 None:intergenic
CTCCGAAAGGTCCTTGTATT+TGG 0.211732 3_4:+55582960 None:intergenic
CCAATGGAGCTGCCACATTT+TGG 0.236456 3_4:+55584076 None:intergenic
TTTGGACTGAACAAAATTTC+AGG 0.251702 3_4:+55582382 None:intergenic
AACAATCTGAAAATCTTCTT+TGG 0.277742 3_4:+55582429 None:intergenic
GCGCTTCCTATTTCCGTATT+GGG 0.313695 3_4:-55587402 Msa0507930:intron
AGGATGGATTATTATGAAAA+AGG 0.324137 3_4:-55582070 Msa0507930:CDS
AGAGTACCCAATACGGAAAT+AGG 0.331001 3_4:+55587396 None:intergenic
CGAATGGGTGCAACAGGATC+AGG 0.331988 3_4:-55586238 Msa0507930:CDS
TCCTAGCTTCAGCAACAATA+TGG 0.343234 3_4:+55581913 None:intergenic
AGTTCAATCTCGAAGTAAAA+TGG 0.346799 3_4:-55585637 Msa0507930:CDS
CCAAAATGTGGCAGCTCCAT+TGG 0.349845 3_4:-55584076 Msa0507930:CDS
CATAACAATGTTCCATCTTC+AGG 0.350576 3_4:+55584243 None:intergenic
TTGCGAGAAAGGCAGCAATA+AGG 0.354563 3_4:-55584013 Msa0507930:CDS
GGCGCTTCCTATTTCCGTAT+TGG 0.360049 3_4:-55587403 Msa0507930:CDS
AAGTTGCCAATCTTCGTCTT+TGG 0.365221 3_4:+55582759 None:intergenic
GGAAGCTGTCGCACTAATAT+TGG 0.366748 3_4:-55584445 Msa0507930:CDS
GACGGGGAACCAATTTATAA+AGG 0.369369 3_4:-55584466 Msa0507930:CDS
TAGAGCACTTGATCCGGTTA+TGG 0.370466 3_4:-55582155 Msa0507930:CDS
TCAGAAGGAGGCTCCTCAAC+TGG 0.380356 3_4:+55584044 None:intergenic
CAGTCCTTGCGGAAACAAAA+AGG 0.381377 3_4:-55583789 Msa0507930:CDS
ACAACCCACCCGATCGGGTC+GGG 0.388044 3_4:-55587601 Msa0507930:five_prime_UTR
GGCTCCTCCACGAATGGAAA+TGG 0.391186 3_4:-55582901 Msa0507930:CDS
GCTTCCACCAGTCACAAGTA+TGG 0.392619 3_4:+55582258 None:intergenic
TTTGATCGAATGGGTGCAAC+AGG 0.394008 3_4:-55586244 Msa0507930:CDS
TGGAAAGTTAGTTAGATTGC+TGG 0.400077 3_4:+55581933 None:intergenic
TTTGATAGCTTGTTGAAAAG+AGG 0.403014 3_4:-55583469 Msa0507930:intron
AGGTCAAAGGTTGCGAGAAA+TGG 0.404209 3_4:-55583982 Msa0507930:CDS
GCGTGGCGCCTCAGCAGGTT+GGG 0.405100 3_4:+55582465 None:intergenic
AGCTCTGTGTTATCCTCATC+TGG 0.405219 3_4:+55582694 None:intergenic
GAAGCGCTATGAAGAGGAAT+TGG 0.405469 3_4:-55583396 Msa0507930:CDS
AATTGTTCCAAGTAAAGCTC+TGG 0.406389 3_4:+55582988 None:intergenic
TGGGAGCTACTTTCTACCTT+GGG 0.410072 3_4:+55582484 None:intergenic
TGATCAACTCCAATCCAGTT+TGG 0.410760 3_4:+55582364 None:intergenic
TTGGGAGCTACTTTCTACCT+TGG 0.411598 3_4:+55582483 None:intergenic
TGCCAAATACAAGGACCTTT+CGG 0.412730 3_4:-55582962 Msa0507930:CDS
GGAGAAACTGTTACCATTGT+TGG 0.413207 3_4:-55587027 Msa0507930:CDS
TGCGAGAAAGGCAGCAATAA+GGG 0.413882 3_4:-55584012 Msa0507930:CDS
CTTTAACAACCCACCCGATC+GGG 0.418323 3_4:-55587606 Msa0507930:five_prime_UTR
GGAACTGAAGCGATTGTAAT+CGG 0.418796 3_4:+55587450 None:intergenic
TATCACAAACACTTCGTTGT+TGG 0.429773 3_4:+55585243 None:intergenic
TGCTGCCTTTGATCGTGGTA+AGG 0.430300 3_4:-55582800 Msa0507930:CDS
TTGGTGCCAAAGACGAAGAT+TGG 0.431400 3_4:-55582765 Msa0507930:CDS
CCCTGGCATCATTGAACGCC+TGG 0.431968 3_4:-55582227 Msa0507930:CDS
TGAGGAAGAGATTGCGAGAA+AGG 0.434305 3_4:-55584024 Msa0507930:CDS
CGAACGCGTGGCGCCTCAGC+AGG 0.435514 3_4:+55582460 None:intergenic
AACGCCTGGAAGCTGGAATT+CGG 0.436950 3_4:-55582213 Msa0507930:CDS
TCATCCGAATTCCAGCTTCC+AGG 0.437442 3_4:+55582209 None:intergenic
CCACGCCATGCATCCATAAC+CGG 0.439157 3_4:+55582142 None:intergenic
TACTTTGATTGTACTCGCTC+TGG 0.441154 3_4:-55586979 Msa0507930:CDS
GATCAAAGGCAGCAGTTGTC+AGG 0.443054 3_4:+55582809 None:intergenic
ACTATTTCCATTTCCATTCG+TGG 0.445874 3_4:+55582894 None:intergenic
AAAGTATTAGTACCTATAGA+TGG 0.446199 3_4:+55585585 None:intergenic
ACTTATGGAGTTCCATCTAT+AGG 0.448061 3_4:-55585597 Msa0507930:intron
CGCGTGGCGCCTCAGCAGGT+TGG 0.453077 3_4:+55582464 None:intergenic
ATCATTGAACGCCTGGAAGC+TGG 0.453300 3_4:-55582220 Msa0507930:CDS
TCTGCCGTCAGCATGTCATC+CGG 0.453326 3_4:+55583702 None:intergenic
TTCTCATTAGACGCAGCGTC+AGG 0.453339 3_4:+55583744 None:intergenic
TCTGCTTATGCATCAGCCCC+TGG 0.455002 3_4:-55582115 Msa0507930:CDS
TGCATACACATTCTGTGATC+AGG 0.456220 3_4:+55585664 None:intergenic
TTGGACTGAACAAAATTTCA+GGG 0.458568 3_4:+55582383 None:intergenic
CGTAAACGACTCAAAACAAA+TGG 0.459916 3_4:-55582925 Msa0507930:CDS
AATGAGAAGGTTATCATGTA+AGG 0.466365 3_4:-55582311 Msa0507930:CDS
AAACTGGATTGGAGTTGATC+AGG 0.466958 3_4:-55582362 Msa0507930:CDS
AGCTTGCCCGCATCTCTTCA+AGG 0.467261 3_4:-55582675 Msa0507930:CDS
GGCTAGATTTACATGGGAAA+AGG 0.468160 3_4:-55584273 Msa0507930:CDS
TGACATGCTGACGGCAGAGC+AGG 0.469962 3_4:-55583697 Msa0507930:intron
TCTACCTTGGGCACAAATGT+TGG 0.469972 3_4:+55582496 None:intergenic
GGAGAACCCAGAGCTTTACT+TGG 0.470796 3_4:-55582995 Msa0507930:CDS
CCGCATCTCTTCAAGGCTCC+AGG 0.473430 3_4:-55582668 Msa0507930:intron
TGGTGAGCCCCGACCCGATC+GGG 0.474643 3_4:+55587593 None:intergenic
CAAAATGTGGCAGCTCCATT+GGG 0.477487 3_4:-55584075 Msa0507930:CDS
GAGACTCAGTGCTGCTCAAA+GGG 0.484024 3_4:-55582845 Msa0507930:CDS
TCAAAGTACTTCAACAATGC+TGG 0.488489 3_4:+55586994 None:intergenic
GGAACATTGTTATGTTGCAC+AGG 0.489999 3_4:-55584234 Msa0507930:CDS
TCCAGGCGTTCAATGATGCC+AGG 0.491307 3_4:+55582226 None:intergenic
TTGTTCAGTCCAAACTGGAT+TGG 0.495233 3_4:-55582373 Msa0507930:CDS
ATCATGTAAGGATGAAAAGC+TGG 0.497771 3_4:-55582299 Msa0507930:CDS
ATAGCCAGTCTCTGCTAAGA+AGG 0.501279 3_4:+55583854 None:intergenic
AATAGTTAGAGCACTTGATC+CGG 0.502102 3_4:-55582161 Msa0507930:CDS
GGTAAGGGCGAGGATACATT+TGG 0.505021 3_4:-55582784 Msa0507930:CDS
TGGGGTTAGATGAGATGGCC+GGG 0.510141 3_4:-55582339 Msa0507930:CDS
TTTCACACTCACATATGATA+AGG 0.513121 3_4:+55584373 None:intergenic
GCGATTTAAGAAGTTGAAGA+TGG 0.513798 3_4:+55587545 None:intergenic
CGATCCTTCTTAGCAGAGAC+TGG 0.517740 3_4:-55583858 Msa0507930:CDS
CTCGCAATCTCTTCCTCAGA+AGG 0.518831 3_4:+55584029 None:intergenic
AATACAGGGCTAGATTTACA+TGG 0.523587 3_4:-55584280 Msa0507930:intron
TTTCATTCTCCTCTCATGTG+AGG 0.524451 3_4:-55581801 Msa0507930:three_prime_UTR
ACTTCAACAATGCTGGATCA+TGG 0.526588 3_4:+55587001 None:intergenic
GATTGTAATCGGATTGGCGT+TGG 0.527135 3_4:+55587461 None:intergenic
TCAATTAAATCTATGTCCGA+TGG 0.528487 3_4:-55583437 Msa0507930:CDS
CTGCCGTCAGCATGTCATCC+GGG 0.530851 3_4:+55583703 None:intergenic
CAGAGACTGGCTATGTCTCT+AGG 0.531810 3_4:-55583845 Msa0507930:CDS
CAACCCACCCGATCGGGTCG+GGG 0.531989 3_4:-55587600 Msa0507930:five_prime_UTR
TTGGGTGCCACCTCCAGTTG+AGG 0.532459 3_4:-55584057 Msa0507930:CDS
CACACAAACATTCACTAGGA+TGG 0.534118 3_4:-55582086 Msa0507930:CDS
CTCGCCCTTACCACGATCAA+AGG 0.535951 3_4:+55582795 None:intergenic
GACTGGCTATGTCTCTAGGC+AGG 0.538143 3_4:-55583841 Msa0507930:CDS
TCTTCAACTTCTTAAATCGC+AGG 0.539615 3_4:-55587542 Msa0507930:five_prime_UTR
AGGACTGCACAACTTTACTA+CGG 0.540370 3_4:+55583805 None:intergenic
AATGTTTGTGTGTGGAAACC+AGG 0.541962 3_4:+55582097 None:intergenic
CAACTGGAGGTGGCACCCAA+TGG 0.542988 3_4:+55584060 None:intergenic
GGAGGCTCCTCAACTGGAGG+TGG 0.543167 3_4:+55584050 None:intergenic
AGCTGTCGCACTAATATTGG+TGG 0.543175 3_4:-55584442 Msa0507930:CDS
ACAATTGCGTGCCAAATACA+AGG 0.543355 3_4:-55582971 Msa0507930:CDS
AGAGACTCAGTGCTGCTCAA+AGG 0.543891 3_4:-55582846 Msa0507930:CDS
AATGGAGGCTCCTCCACGAA+TGG 0.545578 3_4:-55582907 Msa0507930:CDS
CTGGAGCCTTGAAGAGATGC+GGG 0.545647 3_4:+55582669 None:intergenic
AAAGGTTGAAGACCTGAAGA+TGG 0.546155 3_4:-55584255 Msa0507930:CDS
GTGGGGTTAGATGAGATGGC+CGG 0.546632 3_4:-55582340 Msa0507930:CDS
TCCATATTGTTGCTGAAGCT+AGG 0.549499 3_4:-55581914 Msa0507930:three_prime_UTR
TGAGCCCCGACCCGATCGGG+TGG 0.549539 3_4:+55587596 None:intergenic
ACTTTAACAACCCACCCGAT+CGG 0.556231 3_4:-55587607 Msa0507930:five_prime_UTR
GGATCCAACATTTGTGCCCA+AGG 0.558370 3_4:-55582500 Msa0507930:CDS
GCTGCCTTTGATCGTGGTAA+GGG 0.560441 3_4:-55582799 Msa0507930:CDS
TCAGGTGGGGTTAGATGAGA+TGG 0.560508 3_4:-55582344 Msa0507930:CDS
ACACATTCTGTGATCAGGAT+AGG 0.562462 3_4:+55585669 None:intergenic
TTGATCCGGTTATGGATGCA+TGG 0.569262 3_4:-55582147 Msa0507930:CDS
GTCGATAACGATGGGAGTGG+CGG 0.570470 3_4:+55587429 None:intergenic
AAGAGGAATTGGAAAGGGAA+AGG 0.571587 3_4:-55583385 Msa0507930:CDS
TGAAGCGATTGTAATCGGAT+TGG 0.582038 3_4:+55587455 None:intergenic
AAAACAGAAGCGCTATGAAG+AGG 0.582251 3_4:-55583402 Msa0507930:CDS
ATTGTTCCAAGTAAAGCTCT+GGG 0.582286 3_4:+55582989 None:intergenic
AGTTGAGGAGCCTCCTTCTG+AGG 0.582751 3_4:-55584042 Msa0507930:CDS
CAATTAAATCTATGTCCGAT+GGG 0.583416 3_4:-55583436 Msa0507930:CDS
GAATGGGTGCAACAGGATCA+GGG 0.585195 3_4:-55586237 Msa0507930:CDS
CTTTGATCGTGGTAAGGGCG+AGG 0.585724 3_4:-55582794 Msa0507930:CDS
ACTAATTCCATACTTGTGAC+TGG 0.586278 3_4:-55582265 Msa0507930:CDS
CTATGAAGAGGAATTGGAAA+GGG 0.588782 3_4:-55583390 Msa0507930:CDS
ATGGTGAGCCCCGACCCGAT+CGG 0.589594 3_4:+55587592 None:intergenic
AACAACCCACCCGATCGGGT+CGG 0.592888 3_4:-55587602 Msa0507930:five_prime_UTR
TGGATTGGAGTTGATCAGGT+GGG 0.593502 3_4:-55582358 Msa0507930:CDS
GTTTGAGAGAGTACCCAATA+CGG 0.594884 3_4:+55587389 None:intergenic
AAGTAGCTCCCAACCTGCTG+AGG 0.596677 3_4:-55582473 Msa0507930:CDS
GGTCTGGCAGAAAGGAGCTA+AGG 0.597955 3_4:-55584114 Msa0507930:intron
TGAAAATCTTCTTTGGTGAG+CGG 0.599646 3_4:+55582436 None:intergenic
GCGCCATTGTCGATAACGAT+GGG 0.599979 3_4:+55587421 None:intergenic
TAAGGGAGAAACAAGGTCAA+AGG 0.600031 3_4:-55583995 Msa0507930:CDS
GAATGCTGCGTCAACACCAA+AGG 0.600730 3_4:+55585280 None:intergenic
GGACTGCACAACTTTACTAC+GGG 0.602389 3_4:+55583806 None:intergenic
GGATTGGAGTTGATCAGGTG+GGG 0.603330 3_4:-55582357 Msa0507930:CDS
TGGATCATGGTCACCAACAA+TGG 0.605508 3_4:+55587014 None:intergenic
AATAGTTTGACAGGTAGTGT+TGG 0.609953 3_4:-55582877 Msa0507930:intron
ATTGTCGATAACGATGGGAG+TGG 0.615786 3_4:+55587426 None:intergenic
TTGGTGAGCGGACGAACGCG+TGG 0.616384 3_4:+55582448 None:intergenic
GAGCCCCGACCCGATCGGGT+GGG 0.618304 3_4:+55587597 None:intergenic
AAGGCATTGCGGAAGTGAAG+AGG 0.618795 3_4:+55587497 None:intergenic
ACAACTGCTGCCTTTGATCG+TGG 0.621156 3_4:-55582805 Msa0507930:CDS
TGGCCGGGGTCTCAATGAGA+AGG 0.621786 3_4:-55582324 Msa0507930:CDS
CCTGGAGCCTTGAAGAGATG+CGG 0.621822 3_4:+55582668 None:intergenic
CGGCCACGACATAAAGCCAC+GGG 0.622532 3_4:-55587215 Msa0507930:intron
CTGGATTGGAGTTGATCAGG+TGG 0.622971 3_4:-55582359 Msa0507930:CDS
TTGACAGGTAGTGTTGGTCG+TGG 0.623337 3_4:-55582871 Msa0507930:intron
AAGGAAACAACAGCTAGAAG+AGG 0.625342 3_4:-55583366 Msa0507930:CDS
ATATATATTGTCTAAAATCG+AGG 0.625946 3_4:+55581961 None:intergenic
CTGGCAGAAAGGAGCTAAGG+AGG 0.626277 3_4:-55584111 Msa0507930:intron
AATTCCATACTTGTGACTGG+TGG 0.627990 3_4:-55582262 Msa0507930:CDS
ACTCCCATCGTTATCGACAA+TGG 0.628591 3_4:-55587424 Msa0507930:CDS
AGCGCCATTGTCGATAACGA+TGG 0.629390 3_4:+55587420 None:intergenic
CCAGGCGTTCAATGATGCCA+GGG 0.631341 3_4:+55582227 None:intergenic
GCTAACAGTCCTCACATGAG+AGG 0.631500 3_4:+55581792 None:intergenic
TCCACACACAAACATTCACT+AGG 0.632292 3_4:-55582090 Msa0507930:CDS
TAACCTTCTCATTGAGACCC+CGG 0.634694 3_4:+55582321 None:intergenic
CAAAGGCAGCAGTTGTCAGG+AGG 0.634784 3_4:+55582812 None:intergenic
GCAATCTCTTCCTCAGAAGG+AGG 0.635472 3_4:+55584032 None:intergenic
AAGAATCTAAGTAGCAGACA+TGG 0.636385 3_4:+55587573 None:intergenic
ATACCCGTGGCTTTATGTCG+TGG 0.637852 3_4:+55587212 None:intergenic
TCCTAGTGAATGTTTGTGTG+TGG 0.637957 3_4:+55582089 None:intergenic
TCGCTTTCGAATGCTGATCG+TGG 0.643501 3_4:+55586955 None:intergenic
GAAGGAGGCTCCTCAACTGG+AGG 0.645561 3_4:+55584047 None:intergenic
GAGAAATGGCTGAGGCGAAG+AGG 0.646132 3_4:-55583968 Msa0507930:CDS
ATGTTTGTGTGTGGAAACCA+GGG 0.651346 3_4:+55582098 None:intergenic
AAGGTTGCGAGAAATGGCTG+AGG 0.651418 3_4:-55583976 Msa0507930:CDS
GTAAAGTTGTGCAGTCCTTG+CGG 0.652419 3_4:-55583800 Msa0507930:CDS
AAACGACTCAAAACAAATGG+AGG 0.653455 3_4:-55582922 Msa0507930:CDS
AATGGGTGCAACAGGATCAG+GGG 0.654606 3_4:-55586236 Msa0507930:intron
ATACAGGGCTAGATTTACAT+GGG 0.656838 3_4:-55584279 Msa0507930:intron
ATTTCCATTTCCATTCGTGG+AGG 0.662358 3_4:+55582897 None:intergenic
GCTATGAAGAGGAATTGGAA+AGG 0.664977 3_4:-55583391 Msa0507930:CDS
CCGGTTATGGATGCATGGCG+TGG 0.666067 3_4:-55582142 Msa0507930:CDS
ACGGCCACGACATAAAGCCA+CGG 0.672237 3_4:-55587216 Msa0507930:CDS
TTTGGAGATGAAAGGCATTG+CGG 0.672259 3_4:+55587486 None:intergenic
CGATGACGATGAACCAGATG+AGG 0.674955 3_4:-55582707 Msa0507930:CDS
GGGGTTAGATGAGATGGCCG+GGG 0.683662 3_4:-55582338 Msa0507930:CDS
TTAAATCTATGTCCGATGGG+AGG 0.689589 3_4:-55583433 Msa0507930:CDS
GTATACGCTTATAAACATCC+CGG 0.690841 3_4:-55583721 Msa0507930:CDS
CATCCCGGATGACATGCTGA+CGG 0.695168 3_4:-55583706 Msa0507930:CDS
GCAGCAATAAGGGAGAAACA+AGG 0.705579 3_4:-55584002 Msa0507930:CDS
GAGCTGGAAAATGAATTACG+TGG 0.728785 3_4:-55583930 Msa0507930:intron
ATTCGGATGATTAGACCCTG+CGG 0.743477 3_4:-55582196 Msa0507930:CDS
TGTTTGTGTGTGGAAACCAG+GGG 0.796872 3_4:+55582099 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAATTTTTAAATAAAT+AGG - chr3_4:55584819-55584838 Msa0507930:intron 0.0%
!!! TTTTATCTTTTTATAGAAAT+AGG + chr3_4:55583410-55583429 None:intergenic 10.0%
!!! AATTTTGAATTTTTTCATCA+TGG - chr3_4:55582113-55582132 Msa0507930:CDS 15.0%
!!! ATTTTGAATTTTTTCATCAT+GGG - chr3_4:55582114-55582133 Msa0507930:CDS 15.0%
!! AATATGAATAATTTCTAACT+AGG - chr3_4:55582770-55582789 Msa0507930:CDS 15.0%
!! ATATGAATAATTTCTAACTA+GGG - chr3_4:55582771-55582790 Msa0507930:CDS 15.0%
!!! CAATTTTCTAAGAAATTATT+TGG + chr3_4:55585913-55585932 None:intergenic 15.0%
!!! TTTTTGGTGAATTTTTAGAT+GGG - chr3_4:55582166-55582185 Msa0507930:CDS 20.0%
!! ATATATGTTAATGTCATACA+AGG + chr3_4:55582944-55582963 None:intergenic 20.0%
!! TGTACCATATTACATATTAT+GGG - chr3_4:55583068-55583087 Msa0507930:intron 20.0%
!! TATTCCCATAATATGTAATA+TGG + chr3_4:55583075-55583094 None:intergenic 20.0%
!! TATTACATATTATGGGAATA+TGG - chr3_4:55583075-55583094 Msa0507930:intron 20.0%
!! ATAAAAAAACACTTTACTCA+TGG + chr3_4:55583243-55583262 None:intergenic 20.0%
!!! TTATGCTATTTGCTTTATTA+AGG - chr3_4:55584287-55584306 Msa0507930:intron 20.0%
!!! TTGCTTTATTAAGGATTTTA+TGG - chr3_4:55584296-55584315 Msa0507930:intron 20.0%
!! AACATTGTTAAAAAAACTGT+AGG - chr3_4:55584747-55584766 Msa0507930:intron 20.0%
!! ACATTGTTAAAAAAACTGTA+GGG - chr3_4:55584748-55584767 Msa0507930:intron 20.0%
!! TTATTAACACTTTACACATT+TGG + chr3_4:55584910-55584929 None:intergenic 20.0%
!!! TTATATTTTCAGTTTGTTGA+CGG - chr3_4:55584964-55584983 Msa0507930:intron 20.0%
!! TAAGAAATAGTACGTATTTA+GGG + chr3_4:55585131-55585150 None:intergenic 20.0%
!! TCTTATTAAATTCTCAATAC+AGG - chr3_4:55585153-55585172 Msa0507930:intron 20.0%
!! CTTATTAAATTCTCAATACA+GGG - chr3_4:55585154-55585173 Msa0507930:intron 20.0%
!! ATTAAGACTATAAGCATAAA+TGG + chr3_4:55585888-55585907 None:intergenic 20.0%
!!! ATATATATTGTCTAAAATCG+AGG + chr3_4:55587490-55587509 None:intergenic 20.0%
!! TTTTTGTGAGAAAGTGAAAT+TGG + chr3_4:55581807-55581826 None:intergenic 25.0%
! ATTTCACTTTCTCACAAAAA+AGG - chr3_4:55581807-55581826 Msa0507930:three_prime_UTR 25.0%
!!! CTTTAAAGTTTGTTCCTTTT+TGG - chr3_4:55582150-55582169 Msa0507930:CDS 25.0%
! CATCTAAAAATTCACCAAAA+AGG + chr3_4:55582167-55582186 None:intergenic 25.0%
!!! CTTTTTGGTGAATTTTTAGA+TGG - chr3_4:55582165-55582184 Msa0507930:CDS 25.0%
! CAAACATAAGGTTAATTGTT+GGG - chr3_4:55582355-55582374 Msa0507930:CDS 25.0%
!!! TGTTTTTCAGTTTGAGATAA+TGG - chr3_4:55582519-55582538 Msa0507930:intron 25.0%
! TATACTCACATAATTGTAAC+AGG + chr3_4:55582559-55582578 None:intergenic 25.0%
! TGTTACAATTATGTGAGTAT+AGG - chr3_4:55582558-55582577 Msa0507930:intron 25.0%
! TGCATTTGTGTGAAAAAATA+TGG - chr3_4:55582653-55582672 Msa0507930:intron 25.0%
! GAAATTATTCATATTGCTTG+TGG + chr3_4:55582765-55582784 None:intergenic 25.0%
! TAATTTCTAACTAGGGAAAT+AGG - chr3_4:55582778-55582797 Msa0507930:CDS 25.0%
!!! CATTTTTGTGTGTTAGTTTT+AGG + chr3_4:55582854-55582873 None:intergenic 25.0%
! CTAAAACTAACACACAAAAA+TGG - chr3_4:55582852-55582871 Msa0507930:CDS 25.0%
! TACTTGTTCATACTACAAAA+AGG + chr3_4:55582905-55582924 None:intergenic 25.0%
! TTTGTAGTATGAACAAGTAA+TGG - chr3_4:55582906-55582925 Msa0507930:CDS 25.0%
! GTGTACCATATTACATATTA+TGG - chr3_4:55583067-55583086 Msa0507930:intron 25.0%
!! CATTAATGTACAGTGTTTTA+AGG - chr3_4:55583099-55583118 Msa0507930:intron 25.0%
! TCAGTAATATTAAACTCCAA+TGG - chr3_4:55583308-55583327 Msa0507930:intron 25.0%
! TAATATTAAACTCCAATGGT+AGG - chr3_4:55583312-55583331 Msa0507930:intron 25.0%
! ATGATATAAGCTGCAAATTA+TGG + chr3_4:55583355-55583374 None:intergenic 25.0%
! GAACTTATGAAAACAACTTA+TGG + chr3_4:55583526-55583545 None:intergenic 25.0%
! AACATGTATTTACAAAACCA+AGG + chr3_4:55583676-55583695 None:intergenic 25.0%
!! AAAGTATTAGTACCTATAGA+TGG + chr3_4:55583866-55583885 None:intergenic 25.0%
!!! AATACTTTTTAACCCTACAA+TGG - chr3_4:55583878-55583897 Msa0507930:intron 25.0%
!! TGTTGATATCTGTTTAAGTT+AGG - chr3_4:55584091-55584110 Msa0507930:CDS 25.0%
!! GCATTGTACATGTAATTTTA+TGG - chr3_4:55584113-55584132 Msa0507930:intron 25.0%
!! AAATAGCATAAAAAGCATAC+CGG + chr3_4:55584278-55584297 None:intergenic 25.0%
! AAACTATCAGAGTAACTATT+AGG - chr3_4:55584522-55584541 Msa0507930:intron 25.0%
! TTCTATCATAAGCCATATTT+CGG + chr3_4:55584574-55584593 None:intergenic 25.0%
!!! TGTTGTTGTTGCTTTATTTA+AGG - chr3_4:55584654-55584673 Msa0507930:intron 25.0%
! CATTGTTAAAAAAACTGTAG+GGG - chr3_4:55584749-55584768 Msa0507930:intron 25.0%
!! ATAGGATGAATCATTTTCAA+TGG - chr3_4:55584837-55584856 Msa0507930:intron 25.0%
!!! TATATTTTCAGTTTGTTGAC+GGG - chr3_4:55584965-55584984 Msa0507930:intron 25.0%
! AAGAAATAGTACGTATTTAG+GGG + chr3_4:55585130-55585149 None:intergenic 25.0%
! GTAAGAAATAGTACGTATTT+AGG + chr3_4:55585132-55585151 None:intergenic 25.0%
!! GAATTTCTTTTGAATCAACT+TGG - chr3_4:55585545-55585564 Msa0507930:intron 25.0%
!!! GCTTCTTTTTTTTTTTTGCT+TGG - chr3_4:55585860-55585879 Msa0507930:intron 25.0%
! TCTTAGAAAATTGTTTACTG+TGG - chr3_4:55585920-55585939 Msa0507930:intron 25.0%
!!! TGCTTTAAAATGTTTCTGAT+TGG - chr3_4:55586406-55586425 Msa0507930:intron 25.0%
! AAAAAATCCTGTTGATATGT+TGG - chr3_4:55586912-55586931 Msa0507930:intron 25.0%
! AACAATCTGAAAATCTTCTT+TGG + chr3_4:55587022-55587041 None:intergenic 25.0%
!! GAAGATTTTCAGATTGTTTT+CGG - chr3_4:55587024-55587043 Msa0507930:CDS 25.0%
!!! AGTGCTCTAACTATTTTTAT+AGG + chr3_4:55587282-55587301 None:intergenic 25.0%
!!! AGGATGGATTATTATGAAAA+AGG - chr3_4:55587378-55587397 Msa0507930:intron 25.0%
! ATTATGAAAAAGGTGAAGAT+TGG - chr3_4:55587388-55587407 Msa0507930:intron 25.0%
!!! CGAGTTTTGAAGTGAAATTA+GGG + chr3_4:55582084-55582103 None:intergenic 30.0%
CCTAATTTCACTTCAAAACT+CGG - chr3_4:55582082-55582101 Msa0507930:CDS 30.0%
! TTTTTCGCAACATTGTTCAA+CGG - chr3_4:55582213-55582232 Msa0507930:CDS 30.0%
GTCTATGTTTAGCAAACATA+AGG - chr3_4:55582343-55582362 Msa0507930:CDS 30.0%
GCAAACATAAGGTTAATTGT+TGG - chr3_4:55582354-55582373 Msa0507930:CDS 30.0%
! TTTTTAACATTGTGTGACAC+AGG - chr3_4:55582400-55582419 Msa0507930:CDS 30.0%
TACAATTATGTGAGTATAGG+AGG - chr3_4:55582561-55582580 Msa0507930:intron 30.0%
ATAGGTCACTACATCAAAAT+AGG + chr3_4:55582604-55582623 None:intergenic 30.0%
CATAAGTTCAAACCTATCTA+TGG + chr3_4:55582699-55582718 None:intergenic 30.0%
TGAATTGAAGTGAGACAATA+AGG - chr3_4:55582967-55582986 Msa0507930:CDS 30.0%
GAATGTAACCATATGTTCAT+AGG - chr3_4:55583022-55583041 Msa0507930:intron 30.0%
GTTATGAACCTATGAACATA+TGG + chr3_4:55583033-55583052 None:intergenic 30.0%
TAGGTTCATAACAACTAGTT+AGG - chr3_4:55583041-55583060 Msa0507930:intron 30.0%
AGGTTCATAACAACTAGTTA+GGG - chr3_4:55583042-55583061 Msa0507930:intron 30.0%
ATTATGGTGTTTATCCAAAC+AGG + chr3_4:55583339-55583358 None:intergenic 30.0%
! TTTTACTTCGAGATTGAACT+GGG + chr3_4:55583811-55583830 None:intergenic 30.0%
! ATTTTACTTCGAGATTGAAC+TGG + chr3_4:55583812-55583831 None:intergenic 30.0%
AGTTCAATCTCGAAGTAAAA+TGG - chr3_4:55583811-55583830 Msa0507930:CDS 30.0%
!!! GAACTTCTTTTTGAGACTTA+TGG - chr3_4:55583836-55583855 Msa0507930:CDS 30.0%
! TTTTCATTTACGAATAGACC+TGG + chr3_4:55583988-55584007 None:intergenic 30.0%
TCTTGTGACATAGTTATTAC+TGG - chr3_4:55584047-55584066 Msa0507930:CDS 30.0%
! TGACATAGTTATTACTGGTT+TGG - chr3_4:55584052-55584071 Msa0507930:CDS 30.0%
! ATTTTATGGTAAAGACGAGA+TGG - chr3_4:55584310-55584329 Msa0507930:intron 30.0%
! TTTTATGGTAAAGACGAGAT+GGG - chr3_4:55584311-55584330 Msa0507930:intron 30.0%
GACCTATAGATTCTGTAATA+AGG - chr3_4:55584456-55584475 Msa0507930:CDS 30.0%
CTCCTTATTACAGAATCTAT+AGG + chr3_4:55584461-55584480 None:intergenic 30.0%
AGTAACTATTAGGAAAGAGT+TGG - chr3_4:55584532-55584551 Msa0507930:intron 30.0%
AGAGTTGGAAATTAATGAGT+TGG - chr3_4:55584547-55584566 Msa0507930:intron 30.0%
TGGCTTATGATAGAACATTA+TGG - chr3_4:55584579-55584598 Msa0507930:intron 30.0%
TTTAACAATGTTTGTCTGTG+AGG + chr3_4:55584739-55584758 None:intergenic 30.0%
!!! ATATTTTCAGTTTGTTGACG+GGG - chr3_4:55584966-55584985 Msa0507930:intron 30.0%
TTTCACACTCACATATGATA+AGG + chr3_4:55585078-55585097 None:intergenic 30.0%
!! GATTGTTTCTGGTAAGAAAT+AGG - chr3_4:55585255-55585274 Msa0507930:CDS 30.0%
AACAGTAGAAAAACTTAGAC+GGG + chr3_4:55585290-55585309 None:intergenic 30.0%
GAACAGTAGAAAAACTTAGA+CGG + chr3_4:55585291-55585310 None:intergenic 30.0%
TTAAATGGCGTATAAGTCTT+AGG + chr3_4:55585313-55585332 None:intergenic 30.0%
AAGACTTATACGCCATTTAA+TGG - chr3_4:55585313-55585332 Msa0507930:intron 30.0%
!!! CCACATTTTGGTTTTTTCTT+CGG + chr3_4:55585363-55585382 None:intergenic 30.0%
GTCATCAAAAATAAATGAGC+TGG - chr3_4:55585502-55585521 Msa0507930:intron 30.0%
AAGCTACAAGCATATTTGAA+GGG + chr3_4:55585844-55585863 None:intergenic 30.0%
CAAAGTTGACAATGTTTGTT+GGG - chr3_4:55585947-55585966 Msa0507930:intron 30.0%
!! TTTGATAGCTTGTTGAAAAG+AGG - chr3_4:55585979-55585998 Msa0507930:intron 30.0%
TCAATTAAATCTATGTCCGA+TGG - chr3_4:55586011-55586030 Msa0507930:intron 30.0%
CAATTAAATCTATGTCCGAT+GGG - chr3_4:55586012-55586031 Msa0507930:intron 30.0%
AGCTTGAATAAATTGAAGCA+TGG + chr3_4:55586125-55586144 None:intergenic 30.0%
AAGCTTACTAAGTTCCTTAA+TGG - chr3_4:55586274-55586293 Msa0507930:intron 30.0%
AGCTTACTAAGTTCCTTAAT+GGG - chr3_4:55586275-55586294 Msa0507930:intron 30.0%
AGAAAACTGGCTAAATCTTT+AGG - chr3_4:55586302-55586321 Msa0507930:intron 30.0%
!! ATGTTTCTGATTGGTTTCTT+TGG - chr3_4:55586415-55586434 Msa0507930:intron 30.0%
TCTTTGGACATTCTTAACAT+AGG - chr3_4:55586431-55586450 Msa0507930:intron 30.0%
CTTTGGACATTCTTAACATA+GGG - chr3_4:55586432-55586451 Msa0507930:intron 30.0%
TTGGACTGAACAAAATTTCA+GGG + chr3_4:55587068-55587087 None:intergenic 30.0%
TTTGGACTGAACAAAATTTC+AGG + chr3_4:55587069-55587088 None:intergenic 30.0%
! AAATTTTGTTCAGTCCAAAC+TGG - chr3_4:55587070-55587089 Msa0507930:intron 30.0%
AATGAGAAGGTTATCATGTA+AGG - chr3_4:55587137-55587156 Msa0507930:intron 30.0%
AAGAATCTAAGTAGCAGACA+TGG + chr3_4:55581878-55581897 None:intergenic 35.0%
GCGATTTAAGAAGTTGAAGA+TGG + chr3_4:55581906-55581925 None:intergenic 35.0%
TCTTCAACTTCTTAAATCGC+AGG - chr3_4:55581906-55581925 Msa0507930:three_prime_UTR 35.0%
!!! CCGAGTTTTGAAGTGAAATT+AGG + chr3_4:55582085-55582104 None:intergenic 35.0%
! TCAAAGTACTTCAACAATGC+TGG + chr3_4:55582457-55582476 None:intergenic 35.0%
!! GATGTAGTGACCTATTTTGA+TGG - chr3_4:55582609-55582628 Msa0507930:intron 35.0%
GATCAACAACTAAACAACAC+AGG + chr3_4:55582727-55582746 None:intergenic 35.0%
TGAAGTGAGACAATAAGGTT+TGG - chr3_4:55582972-55582991 Msa0507930:CDS 35.0%
TTCATAACAACTAGTTAGGG+AGG - chr3_4:55583045-55583064 Msa0507930:intron 35.0%
! GTTGTTTCATCTTCAGATTC+TGG - chr3_4:55583173-55583192 Msa0507930:intron 35.0%
!! GACTTTGCTTTTGATCGAAT+GGG - chr3_4:55583195-55583214 Msa0507930:intron 35.0%
GATGTTCTCATAAGCTATCT+TGG - chr3_4:55583461-55583480 Msa0507930:CDS 35.0%
TCAAATAAGTCCATCCAAAC+AGG - chr3_4:55583585-55583604 Msa0507930:intron 35.0%
ACTTATGGAGTTCCATCTAT+AGG - chr3_4:55583851-55583870 Msa0507930:CDS 35.0%
AAGGCTCTTGTAAAAGATCA+AGG + chr3_4:55583910-55583929 None:intergenic 35.0%
ATGTCACAAGATGTCAAACA+TGG + chr3_4:55584038-55584057 None:intergenic 35.0%
TATCACAAACACTTCGTTGT+TGG + chr3_4:55584208-55584227 None:intergenic 35.0%
! CGAAGTGTTTGTGATAAAGA+TGG - chr3_4:55584212-55584231 Msa0507930:CDS 35.0%
AGCACCTATAGTTGAAAAGA+TGG - chr3_4:55584394-55584413 Msa0507930:CDS 35.0%
ACCTATAGTTGAAAAGATGG+TGG - chr3_4:55584397-55584416 Msa0507930:CDS 35.0%
! ACCACCATCTTTTCAACTAT+AGG + chr3_4:55584401-55584420 None:intergenic 35.0%
! AGATGGTGGTAAATAAGCTT+AGG - chr3_4:55584411-55584430 Msa0507930:CDS 35.0%
GTAAATAAGCTTAGGTGGTT+TGG - chr3_4:55584419-55584438 Msa0507930:CDS 35.0%
AATAAGGAGAGTAGATCAGA+TGG - chr3_4:55584472-55584491 Msa0507930:CDS 35.0%
! TAATGAGTTGGACCGAAATA+TGG - chr3_4:55584559-55584578 Msa0507930:intron 35.0%
TAACACTTTACACATTTGGC+AGG + chr3_4:55584906-55584925 None:intergenic 35.0%
CGACAGCTTCCTTTATAAAT+TGG + chr3_4:55584994-55585013 None:intergenic 35.0%
AATACAGGGCTAGATTTACA+TGG - chr3_4:55585168-55585187 Msa0507930:intron 35.0%
ATACAGGGCTAGATTTACAT+GGG - chr3_4:55585169-55585188 Msa0507930:intron 35.0%
CATAACAATGTTCCATCTTC+AGG + chr3_4:55585208-55585227 None:intergenic 35.0%
ACAGTAGAAAAACTTAGACG+GGG + chr3_4:55585289-55585308 None:intergenic 35.0%
TTATACGCCATTTAATGGTC+TGG - chr3_4:55585318-55585337 Msa0507930:intron 35.0%
CCGAAGAAAAAACCAAAATG+TGG - chr3_4:55585360-55585379 Msa0507930:intron 35.0%
GGAAAATGAATTACGTGGTT+TGG - chr3_4:55585523-55585542 Msa0507930:intron 35.0%
GTATACGCTTATAAACATCC+CGG - chr3_4:55585727-55585746 Msa0507930:intron 35.0%
GAAGCTACAAGCATATTTGA+AGG + chr3_4:55585845-55585864 None:intergenic 35.0%
GCAAAGTTGACAATGTTTGT+TGG - chr3_4:55585946-55585965 Msa0507930:intron 35.0%
CTATGAAGAGGAATTGGAAA+GGG - chr3_4:55586058-55586077 Msa0507930:intron 35.0%
AATTGAAGCATGGAACATAC+AGG + chr3_4:55586115-55586134 None:intergenic 35.0%
TGGTATTCAGCTTAGTGAAA+TGG - chr3_4:55586186-55586205 Msa0507930:intron 35.0%
GGTATTCAGCTTAGTGAAAT+GGG - chr3_4:55586187-55586206 Msa0507930:intron 35.0%
GCTTACTAAGTTCCTTAATG+GGG - chr3_4:55586276-55586295 Msa0507930:intron 35.0%
CTTACTAAGTTCCTTAATGG+GGG - chr3_4:55586277-55586296 Msa0507930:intron 35.0%
ATTGTTCCAAGTAAAGCTCT+GGG + chr3_4:55586462-55586481 None:intergenic 35.0%
AATTGTTCCAAGTAAAGCTC+TGG + chr3_4:55586463-55586482 None:intergenic 35.0%
!!! TTGTTTTGAGTCGTTTACGT+TGG + chr3_4:55586522-55586541 None:intergenic 35.0%
CGTAAACGACTCAAAACAAA+TGG - chr3_4:55586523-55586542 Msa0507930:intron 35.0%
AAACGACTCAAAACAAATGG+AGG - chr3_4:55586526-55586545 Msa0507930:intron 35.0%
ACTATTTCCATTTCCATTCG+TGG + chr3_4:55586557-55586576 None:intergenic 35.0%
GGAAATGGAAATAGTTTGAC+AGG - chr3_4:55586562-55586581 Msa0507930:intron 35.0%
AATAGTTTGACAGGTAGTGT+TGG - chr3_4:55586571-55586590 Msa0507930:intron 35.0%
! AGGTCGAGTCTTTTATAATG+TGG - chr3_4:55586805-55586824 Msa0507930:intron 35.0%
!!! AACACGGCTAATTTTAGGTT+AGG + chr3_4:55586833-55586852 None:intergenic 35.0%
CATGAGAGTTCTTTGATACA+AGG + chr3_4:55586889-55586908 None:intergenic 35.0%
! ATCCTGTTGATATGTTGGTT+TGG - chr3_4:55586917-55586936 Msa0507930:intron 35.0%
TACCAAACCAACATATCAAC+AGG + chr3_4:55586922-55586941 None:intergenic 35.0%
!! TGTTGATATGTTGGTTTGGT+AGG - chr3_4:55586921-55586940 Msa0507930:intron 35.0%
TGAAAATCTTCTTTGGTGAG+CGG + chr3_4:55587015-55587034 None:intergenic 35.0%
! AGATTGTTTTCGGAGTTGAA+AGG - chr3_4:55587034-55587053 Msa0507930:intron 35.0%
! TTTTCGGAGTTGAAAGGTTT+AGG - chr3_4:55587040-55587059 Msa0507930:intron 35.0%
ATCATGTAAGGATGAAAAGC+TGG - chr3_4:55587149-55587168 Msa0507930:intron 35.0%
ACTAATTCCATACTTGTGAC+TGG - chr3_4:55587183-55587202 Msa0507930:intron 35.0%
! AATAGTTAGAGCACTTGATC+CGG - chr3_4:55587287-55587306 Msa0507930:intron 35.0%
TGGAAAGTTAGTTAGATTGC+TGG + chr3_4:55587518-55587537 None:intergenic 35.0%
!! TTTGGAGATGAAAGGCATTG+CGG + chr3_4:55581965-55581984 None:intergenic 40.0%
!! CGTTGGATTTTGGAGATGAA+AGG + chr3_4:55581973-55581992 None:intergenic 40.0%
TGAAGCGATTGTAATCGGAT+TGG + chr3_4:55581996-55582015 None:intergenic 40.0%
GGAACTGAAGCGATTGTAAT+CGG + chr3_4:55582001-55582020 None:intergenic 40.0%
! AGAGTACCCAATACGGAAAT+AGG + chr3_4:55582055-55582074 None:intergenic 40.0%
!! GTTTGAGAGAGTACCCAATA+CGG + chr3_4:55582062-55582081 None:intergenic 40.0%
!! TGGTGAATTTTTAGATGGGC+TGG - chr3_4:55582170-55582189 Msa0507930:CDS 40.0%
ATGTTGCGAAAAACAACACG+AGG + chr3_4:55582206-55582225 None:intergenic 40.0%
GATGAAGAAAAAGATACCCG+TGG + chr3_4:55582252-55582271 None:intergenic 40.0%
GGAGAAACTGTTACCATTGT+TGG - chr3_4:55582421-55582440 Msa0507930:CDS 40.0%
ACTTCAACAATGCTGGATCA+TGG + chr3_4:55582450-55582469 None:intergenic 40.0%
TACTTTGATTGTACTCGCTC+TGG - chr3_4:55582469-55582488 Msa0507930:CDS 40.0%
TGACATGCAGCCATCAAAAT+AGG + chr3_4:55582622-55582641 None:intergenic 40.0%
CCTATCTATGGCAACAAAAC+AGG + chr3_4:55582687-55582706 None:intergenic 40.0%
!! CCTGTTTTGTTGCCATAGAT+AGG - chr3_4:55582684-55582703 Msa0507930:CDS 40.0%
! ATTGCTTGTGGCGTTCATTT+TGG + chr3_4:55582753-55582772 None:intergenic 40.0%
! TTTGCTATGCGTCATGTACT+TGG - chr3_4:55582816-55582835 Msa0507930:CDS 40.0%
TTGCTATGCGTCATGTACTT+GGG - chr3_4:55582817-55582836 Msa0507930:CDS 40.0%
TTTGGCACGACACACTTTAA+AGG - chr3_4:55582990-55583009 Msa0507930:CDS 40.0%
!! GGACTTTGCTTTTGATCGAA+TGG - chr3_4:55583194-55583213 Msa0507930:intron 40.0%
TTTAGCAGCACACCAAAGTT+GGG + chr3_4:55583612-55583631 None:intergenic 40.0%
ATAGGATGATCAATCTGCTC+TGG + chr3_4:55583764-55583783 None:intergenic 40.0%
ACACATTCTGTGATCAGGAT+AGG + chr3_4:55583782-55583801 None:intergenic 40.0%
TGCATACACATTCTGTGATC+AGG + chr3_4:55583787-55583806 None:intergenic 40.0%
! TCAAGGCTTTTGCCATTGTA+GGG + chr3_4:55583893-55583912 None:intergenic 40.0%
! ATCAAGGCTTTTGCCATTGT+AGG + chr3_4:55583894-55583913 None:intergenic 40.0%
!! CGCTTCTGTTTCTACTACTA+AGG + chr3_4:55583929-55583948 None:intergenic 40.0%
TCATTTACGAATAGACCTGG+TGG + chr3_4:55583985-55584004 None:intergenic 40.0%
AAAGCATACCGGAATCACAT+GGG + chr3_4:55584267-55584286 None:intergenic 40.0%
! AAAAGCATACCGGAATCACA+TGG + chr3_4:55584268-55584287 None:intergenic 40.0%
TGGTGGTAAATAAGCTTAGG+TGG - chr3_4:55584414-55584433 Msa0507930:CDS 40.0%
! AAACCTTTTCCCACTAAGTG+GGG + chr3_4:55584628-55584647 None:intergenic 40.0%
! CAAACCTTTTCCCACTAAGT+GGG + chr3_4:55584629-55584648 None:intergenic 40.0%
! TGTTTTGCAGAGTTGCTTGT+AGG - chr3_4:55584870-55584889 Msa0507930:intron 40.0%
GACGGGGAACCAATTTATAA+AGG - chr3_4:55584982-55585001 Msa0507930:intron 40.0%
! AGCTTGGTAATAGCAAAAGC+AGG + chr3_4:55585105-55585124 None:intergenic 40.0%
!! TACGTATTTAGGGGTTAGCT+TGG + chr3_4:55585121-55585140 None:intergenic 40.0%
GGCTAGATTTACATGGGAAA+AGG - chr3_4:55585175-55585194 Msa0507930:intron 40.0%
AAAGGTTGAAGACCTGAAGA+TGG - chr3_4:55585193-55585212 Msa0507930:intron 40.0%
GGAACATTGTTATGTTGCAC+AGG - chr3_4:55585214-55585233 Msa0507930:intron 40.0%
TTCAGAAGCTCGATTGTTTC+TGG - chr3_4:55585244-55585263 Msa0507930:intron 40.0%
CTTTCTGCCAGACCATTAAA+TGG + chr3_4:55585328-55585347 None:intergenic 40.0%
CATTTAATGGTCTGGCAGAA+AGG - chr3_4:55585326-55585345 Msa0507930:intron 40.0%
TAAGGGAGAAACAAGGTCAA+AGG - chr3_4:55585453-55585472 Msa0507930:intron 40.0%
GAGCTGGAAAATGAATTACG+TGG - chr3_4:55585518-55585537 Msa0507930:intron 40.0%
AGGACTGCACAACTTTACTA+CGG + chr3_4:55585646-55585665 None:intergenic 40.0%
! ATTTGAAGGGTGTGATGACA+GGG + chr3_4:55585831-55585850 None:intergenic 40.0%
! TATTTGAAGGGTGTGATGAC+AGG + chr3_4:55585832-55585851 None:intergenic 40.0%
TTAAATCTATGTCCGATGGG+AGG - chr3_4:55586015-55586034 Msa0507930:intron 40.0%
!! AAAACAGAAGCGCTATGAAG+AGG - chr3_4:55586046-55586065 Msa0507930:intron 40.0%
GCTATGAAGAGGAATTGGAA+AGG - chr3_4:55586057-55586076 Msa0507930:intron 40.0%
AAGAGGAATTGGAAAGGGAA+AGG - chr3_4:55586063-55586082 Msa0507930:intron 40.0%
AAGGAAACAACAGCTAGAAG+AGG - chr3_4:55586082-55586101 Msa0507930:intron 40.0%
ATATTCATGCGAGCAAGAGA+TGG - chr3_4:55586166-55586185 Msa0507930:intron 40.0%
!! CTGGCTAAATCTTTAGGACA+AGG - chr3_4:55586308-55586327 Msa0507930:intron 40.0%
ACAATTGCGTGCCAAATACA+AGG - chr3_4:55586477-55586496 Msa0507930:intron 40.0%
TGCCAAATACAAGGACCTTT+CGG - chr3_4:55586486-55586505 Msa0507930:intron 40.0%
! GTTGGTCAATTTTCTCCGAA+AGG + chr3_4:55586504-55586523 None:intergenic 40.0%
ATTTCCATTTCCATTCGTGG+AGG + chr3_4:55586554-55586573 None:intergenic 40.0%
AAGTTGCCAATCTTCGTCTT+TGG + chr3_4:55586692-55586711 None:intergenic 40.0%
ATAAAAGACTCGACCTAACC+TGG + chr3_4:55586801-55586820 None:intergenic 40.0%
! CACACAACACGGCTAATTTT+AGG + chr3_4:55586838-55586857 None:intergenic 40.0%
ACCAACACATACACACAACA+CGG + chr3_4:55586849-55586868 None:intergenic 40.0%
! GTTGTGTGTATGTGTTGGTA+TGG - chr3_4:55586850-55586869 Msa0507930:intron 40.0%
!! TATGTTGGTTTGGTAGGACT+TGG - chr3_4:55586927-55586946 Msa0507930:CDS 40.0%
TTGTTCAGTCCAAACTGGAT+TGG - chr3_4:55587075-55587094 Msa0507930:intron 40.0%
TGATCAACTCCAATCCAGTT+TGG + chr3_4:55587087-55587106 None:intergenic 40.0%
! AAACTGGATTGGAGTTGATC+AGG - chr3_4:55587086-55587105 Msa0507930:intron 40.0%
AATTCCATACTTGTGACTGG+TGG - chr3_4:55587186-55587205 Msa0507930:intron 40.0%
! ATTTTTATAGGCGAACCGCA+GGG + chr3_4:55587270-55587289 None:intergenic 40.0%
!! TATTTTTATAGGCGAACCGC+AGG + chr3_4:55587271-55587290 None:intergenic 40.0%
ATGTTTGTGTGTGGAAACCA+GGG + chr3_4:55587353-55587372 None:intergenic 40.0%
AATGTTTGTGTGTGGAAACC+AGG + chr3_4:55587354-55587373 None:intergenic 40.0%
TCCACACACAAACATTCACT+AGG - chr3_4:55587358-55587377 Msa0507930:intron 40.0%
TCCTAGTGAATGTTTGTGTG+TGG + chr3_4:55587362-55587381 None:intergenic 40.0%
CACACAAACATTCACTAGGA+TGG - chr3_4:55587362-55587381 Msa0507930:intron 40.0%
TCCATATTGTTGCTGAAGCT+AGG - chr3_4:55587534-55587553 Msa0507930:five_prime_UTR 40.0%
TCCTAGCTTCAGCAACAATA+TGG + chr3_4:55587538-55587557 None:intergenic 40.0%
TTTCATTCTCCTCTCATGTG+AGG - chr3_4:55587647-55587666 Msa0507930:five_prime_UTR 40.0%
ACTTTAACAACCCACCCGAT+CGG - chr3_4:55581841-55581860 Msa0507930:three_prime_UTR 45.0%
!!! ATCGGATTGGCGTTGGATTT+TGG + chr3_4:55581983-55582002 None:intergenic 45.0%
!! GATTGTAATCGGATTGGCGT+TGG + chr3_4:55581990-55582009 None:intergenic 45.0%
ATTGTCGATAACGATGGGAG+TGG + chr3_4:55582025-55582044 None:intergenic 45.0%
ACTCCCATCGTTATCGACAA+TGG - chr3_4:55582024-55582043 Msa0507930:exon 45.0%
GCGCTTCCTATTTCCGTATT+GGG - chr3_4:55582046-55582065 Msa0507930:CDS 45.0%
TGGATCATGGTCACCAACAA+TGG + chr3_4:55582437-55582456 None:intergenic 45.0%
TGATGGCTGCATGTCAGAAT+TGG - chr3_4:55582626-55582645 Msa0507930:intron 45.0%
! CGACACACTTTAAAGGTTGC+AGG - chr3_4:55582997-55583016 Msa0507930:CDS 45.0%
! CACACTTTAAAGGTTGCAGG+TGG - chr3_4:55583000-55583019 Msa0507930:intron 45.0%
TTTGATCGAATGGGTGCAAC+AGG - chr3_4:55583204-55583223 Msa0507930:intron 45.0%
ATCCAAACAGGACCTACCAT+TGG + chr3_4:55583327-55583346 None:intergenic 45.0%
TTAGCAGCACACCAAAGTTG+GGG + chr3_4:55583611-55583630 None:intergenic 45.0%
GTTTAGCAGCACACCAAAGT+TGG + chr3_4:55583613-55583632 None:intergenic 45.0%
! CTTTGGTGTGCTGCTAAACT+TGG - chr3_4:55583614-55583633 Msa0507930:intron 45.0%
!! ATCGTGTGGTGTTGTTACCT+TGG - chr3_4:55583640-55583659 Msa0507930:intron 45.0%
!! TGGTGTTGTTACCTTGGACT+TGG - chr3_4:55583646-55583665 Msa0507930:intron 45.0%
AAGATTGGGCATAAGGCAAC+AGG + chr3_4:55583960-55583979 None:intergenic 45.0%
! TAGACCTGGTGGTGAAGATT+GGG + chr3_4:55583974-55583993 None:intergenic 45.0%
! ATAGACCTGGTGGTGAAGAT+TGG + chr3_4:55583975-55583994 None:intergenic 45.0%
TGGTAAAGACGAGATGGGAT+AGG - chr3_4:55584316-55584335 Msa0507930:intron 45.0%
AGAGAGAGAGAGAGAGAGTT+GGG - chr3_4:55584369-55584388 Msa0507930:intron 45.0%
! CCAAACCTTTTCCCACTAAG+TGG + chr3_4:55584630-55584649 None:intergenic 45.0%
CCACTTAGTGGGAAAAGGTT+TGG - chr3_4:55584627-55584646 Msa0507930:intron 45.0%
GGAAGCTGTCGCACTAATAT+TGG - chr3_4:55585003-55585022 Msa0507930:intron 45.0%
AGCTGTCGCACTAATATTGG+TGG - chr3_4:55585006-55585025 Msa0507930:intron 45.0%
CAAAATGTGGCAGCTCCATT+GGG - chr3_4:55585373-55585392 Msa0507930:intron 45.0%
TGAGGAAGAGATTGCGAGAA+AGG - chr3_4:55585424-55585443 Msa0507930:intron 45.0%
TTGCGAGAAAGGCAGCAATA+AGG - chr3_4:55585435-55585454 Msa0507930:intron 45.0%
TGCGAGAAAGGCAGCAATAA+GGG - chr3_4:55585436-55585455 Msa0507930:intron 45.0%
GCAGCAATAAGGGAGAAACA+AGG - chr3_4:55585446-55585465 Msa0507930:intron 45.0%
AGGTCAAAGGTTGCGAGAAA+TGG - chr3_4:55585466-55585485 Msa0507930:intron 45.0%
ATAGCCAGTCTCTGCTAAGA+AGG + chr3_4:55585597-55585616 None:intergenic 45.0%
GGACTGCACAACTTTACTAC+GGG + chr3_4:55585645-55585664 None:intergenic 45.0%
GTAAAGTTGTGCAGTCCTTG+CGG - chr3_4:55585648-55585667 Msa0507930:CDS 45.0%
CAGTCCTTGCGGAAACAAAA+AGG - chr3_4:55585659-55585678 Msa0507930:CDS 45.0%
!! CTCACCTTTTTGTTTCCGCA+AGG + chr3_4:55585666-55585685 None:intergenic 45.0%
! TTTTAATCGCTGCCTCCCAT+CGG + chr3_4:55586030-55586049 None:intergenic 45.0%
! GAAGCGCTATGAAGAGGAAT+TGG - chr3_4:55586052-55586071 Msa0507930:intron 45.0%
! CAGTTTTCTCTCCCCCATTA+AGG + chr3_4:55586291-55586310 None:intergenic 45.0%
CTTAATGGGGGAGAGAAAAC+TGG - chr3_4:55586289-55586308 Msa0507930:intron 45.0%
GCACGACTTCAATCTTGACA+AGG - chr3_4:55586347-55586366 Msa0507930:intron 45.0%
CTCCGAAAGGTCCTTGTATT+TGG + chr3_4:55586491-55586510 None:intergenic 45.0%
!! TTGGTGCCAAAGACGAAGAT+TGG - chr3_4:55586683-55586702 Msa0507930:intron 45.0%
AGCTCTGTGTTATCCTCATC+TGG + chr3_4:55586757-55586776 None:intergenic 45.0%
TCTACCTTGGGCACAAATGT+TGG + chr3_4:55586955-55586974 None:intergenic 45.0%
! TGGGAGCTACTTTCTACCTT+GGG + chr3_4:55586967-55586986 None:intergenic 45.0%
! TTGGGAGCTACTTTCTACCT+TGG + chr3_4:55586968-55586987 None:intergenic 45.0%
! TGGATTGGAGTTGATCAGGT+GGG - chr3_4:55587090-55587109 Msa0507930:intron 45.0%
TAACCTTCTCATTGAGACCC+CGG + chr3_4:55587130-55587149 None:intergenic 45.0%
ATTCGGATGATTAGACCCTG+CGG - chr3_4:55587252-55587271 Msa0507930:CDS 45.0%
! TAGAGCACTTGATCCGGTTA+TGG - chr3_4:55587293-55587312 Msa0507930:intron 45.0%
TTGATCCGGTTATGGATGCA+TGG - chr3_4:55587301-55587320 Msa0507930:intron 45.0%
TGTTTGTGTGTGGAAACCAG+GGG + chr3_4:55587352-55587371 None:intergenic 45.0%
!! TAAAAAACTAAAATAAAAAA+TGG - chr3_4:55584785-55584804 Msa0507930:intron 5.0%
CTTTAACAACCCACCCGATC+GGG - chr3_4:55581842-55581861 Msa0507930:three_prime_UTR 50.0%
!! AAGGCATTGCGGAAGTGAAG+AGG + chr3_4:55581954-55581973 None:intergenic 50.0%
GCGCCATTGTCGATAACGAT+GGG + chr3_4:55582030-55582049 None:intergenic 50.0%
AGCGCCATTGTCGATAACGA+TGG + chr3_4:55582031-55582050 None:intergenic 50.0%
GGCGCTTCCTATTTCCGTAT+TGG - chr3_4:55582045-55582064 Msa0507930:CDS 50.0%
!! ATACCCGTGGCTTTATGTCG+TGG + chr3_4:55582239-55582258 None:intergenic 50.0%
TCGCTTTCGAATGCTGATCG+TGG + chr3_4:55582496-55582515 None:intergenic 50.0%
GAATGGGTGCAACAGGATCA+GGG - chr3_4:55583211-55583230 Msa0507930:intron 50.0%
AATGGGTGCAACAGGATCAG+GGG - chr3_4:55583212-55583231 Msa0507930:intron 50.0%
CTCCAATGGTAGGTCCTGTT+TGG - chr3_4:55583322-55583341 Msa0507930:intron 50.0%
AAAGTTGGGGCCTGTTTGGA+TGG + chr3_4:55583598-55583617 None:intergenic 50.0%
ATCCAAACAGGCCCCAACTT+TGG - chr3_4:55583597-55583616 Msa0507930:intron 50.0%
! TGGTGTGCTGCTAAACTTGG+TGG - chr3_4:55583617-55583636 Msa0507930:intron 50.0%
! GCTAAACTTGGTGGATCGTG+TGG - chr3_4:55583626-55583645 Msa0507930:intron 50.0%
ACCTTGGACTTGGAGTTCCT+TGG - chr3_4:55583656-55583675 Msa0507930:intron 50.0%
ACCAAGGAACTCCAAGTCCA+AGG + chr3_4:55583660-55583679 None:intergenic 50.0%
GGTGGTGAAGATTGGGCATA+AGG + chr3_4:55583967-55583986 None:intergenic 50.0%
TATGCCCAATCTTCACCACC+AGG - chr3_4:55583967-55583986 Msa0507930:CDS 50.0%
! TTTTCTGCCATGCCAGCCTT+TGG - chr3_4:55584152-55584171 Msa0507930:intron 50.0%
GAATGCTGCGTCAACACCAA+AGG + chr3_4:55584171-55584190 None:intergenic 50.0%
! GATGGTCTTGCTATGTGTCC+TGG - chr3_4:55584230-55584249 Msa0507930:CDS 50.0%
! ACATGGGTTGTAGCGAATCC+AGG + chr3_4:55584251-55584270 None:intergenic 50.0%
CGCTACAACCCATGTGATTC+CGG - chr3_4:55584256-55584275 Msa0507930:CDS 50.0%
GAGAGAGAGAGAGAGAGAGT+TGG - chr3_4:55584368-55584387 Msa0507930:intron 50.0%
! CTTTTCCCACTAAGTGGGGT+CGG + chr3_4:55584624-55584643 None:intergenic 50.0%
! CCAATGGAGCTGCCACATTT+TGG + chr3_4:55585375-55585394 None:intergenic 50.0%
CCAAAATGTGGCAGCTCCAT+TGG - chr3_4:55585372-55585391 Msa0507930:intron 50.0%
GCAATCTCTTCCTCAGAAGG+AGG + chr3_4:55585419-55585438 None:intergenic 50.0%
CTCGCAATCTCTTCCTCAGA+AGG + chr3_4:55585422-55585441 None:intergenic 50.0%
AAGGTTGCGAGAAATGGCTG+AGG - chr3_4:55585472-55585491 Msa0507930:intron 50.0%
CGATCCTTCTTAGCAGAGAC+TGG - chr3_4:55585590-55585609 Msa0507930:intron 50.0%
! CAGAGACTGGCTATGTCTCT+AGG - chr3_4:55585603-55585622 Msa0507930:CDS 50.0%
TTCTCATTAGACGCAGCGTC+AGG + chr3_4:55585707-55585726 None:intergenic 50.0%
GGAGAACCCAGAGCTTTACT+TGG - chr3_4:55586453-55586472 Msa0507930:intron 50.0%
!! TTGACAGGTAGTGTTGGTCG+TGG - chr3_4:55586577-55586596 Msa0507930:intron 50.0%
! AGAGACTCAGTGCTGCTCAA+AGG - chr3_4:55586602-55586621 Msa0507930:intron 50.0%
! GAGACTCAGTGCTGCTCAAA+GGG - chr3_4:55586603-55586622 Msa0507930:intron 50.0%
GATCAAAGGCAGCAGTTGTC+AGG + chr3_4:55586642-55586661 None:intergenic 50.0%
ACAACTGCTGCCTTTGATCG+TGG - chr3_4:55586643-55586662 Msa0507930:intron 50.0%
TGCTGCCTTTGATCGTGGTA+AGG - chr3_4:55586648-55586667 Msa0507930:intron 50.0%
GCTGCCTTTGATCGTGGTAA+GGG - chr3_4:55586649-55586668 Msa0507930:intron 50.0%
GGTAAGGGCGAGGATACATT+TGG - chr3_4:55586664-55586683 Msa0507930:intron 50.0%
CGATGACGATGAACCAGATG+AGG - chr3_4:55586741-55586760 Msa0507930:intron 50.0%
GCCGTGTTGTGTGTATGTGT+TGG - chr3_4:55586845-55586864 Msa0507930:intron 50.0%
GGATCCAACATTTGTGCCCA+AGG - chr3_4:55586948-55586967 Msa0507930:CDS 50.0%
! CTGGATTGGAGTTGATCAGG+TGG - chr3_4:55587089-55587108 Msa0507930:intron 50.0%
! GGATTGGAGTTGATCAGGTG+GGG - chr3_4:55587091-55587110 Msa0507930:intron 50.0%
TCAGGTGGGGTTAGATGAGA+TGG - chr3_4:55587104-55587123 Msa0507930:intron 50.0%
GCTTCCACCAGTCACAAGTA+TGG + chr3_4:55587193-55587212 None:intergenic 50.0%
ATCATTGAACGCCTGGAAGC+TGG - chr3_4:55587228-55587247 Msa0507930:CDS 50.0%
AACGCCTGGAAGCTGGAATT+CGG - chr3_4:55587235-55587254 Msa0507930:CDS 50.0%
TCATCCGAATTCCAGCTTCC+AGG + chr3_4:55587242-55587261 None:intergenic 50.0%
GTCGATAACGATGGGAGTGG+CGG + chr3_4:55582022-55582041 None:intergenic 55.0%
ACGGCCACGACATAAAGCCA+CGG - chr3_4:55582232-55582251 Msa0507930:CDS 55.0%
CGAATGGGTGCAACAGGATC+AGG - chr3_4:55583210-55583229 Msa0507930:intron 55.0%
GTGCAACAGGATCAGGGGTA+TGG - chr3_4:55583217-55583236 Msa0507930:intron 55.0%
CACCAAAGTTGGGGCCTGTT+TGG + chr3_4:55583602-55583621 None:intergenic 55.0%
GTCAACACCAAAGGCTGGCA+TGG + chr3_4:55584162-55584181 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr3_4:55584616-55584635 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr3_4:55584615-55584634 Msa0507930:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr3_4:55584616-55584635 Msa0507930:intron 55.0%
CGACCCCACTTAGTGGGAAA+AGG - chr3_4:55584622-55584641 Msa0507930:intron 55.0%
GGTCTGGCAGAAAGGAGCTA+AGG - chr3_4:55585334-55585353 Msa0507930:intron 55.0%
CTGGCAGAAAGGAGCTAAGG+AGG - chr3_4:55585337-55585356 Msa0507930:intron 55.0%
TCAGAAGGAGGCTCCTCAAC+TGG + chr3_4:55585407-55585426 None:intergenic 55.0%
AGTTGAGGAGCCTCCTTCTG+AGG - chr3_4:55585406-55585425 Msa0507930:intron 55.0%
GAGAAATGGCTGAGGCGAAG+AGG - chr3_4:55585480-55585499 Msa0507930:intron 55.0%
! GACTGGCTATGTCTCTAGGC+AGG - chr3_4:55585607-55585626 Msa0507930:CDS 55.0%
CATCCCGGATGACATGCTGA+CGG - chr3_4:55585742-55585761 Msa0507930:intron 55.0%
TCTGCCGTCAGCATGTCATC+CGG + chr3_4:55585749-55585768 None:intergenic 55.0%
AATGGAGGCTCCTCCACGAA+TGG - chr3_4:55586541-55586560 Msa0507930:intron 55.0%
GGCTCCTCCACGAATGGAAA+TGG - chr3_4:55586547-55586566 Msa0507930:intron 55.0%
CAAAGGCAGCAGTTGTCAGG+AGG + chr3_4:55586639-55586658 None:intergenic 55.0%
CTCGCCCTTACCACGATCAA+AGG + chr3_4:55586656-55586675 None:intergenic 55.0%
CTTTGATCGTGGTAAGGGCG+AGG - chr3_4:55586654-55586673 Msa0507930:intron 55.0%
AAGTAGCTCCCAACCTGCTG+AGG - chr3_4:55586975-55586994 Msa0507930:CDS 55.0%
GTGGGGTTAGATGAGATGGC+CGG - chr3_4:55587108-55587127 Msa0507930:intron 55.0%
TGGGGTTAGATGAGATGGCC+GGG - chr3_4:55587109-55587128 Msa0507930:intron 55.0%
! GGTGGAAGCTCTCTTTTCCC+TGG - chr3_4:55587204-55587223 Msa0507930:intron 55.0%
CCAGGCGTTCAATGATGCCA+GGG + chr3_4:55587224-55587243 None:intergenic 55.0%
TCCAGGCGTTCAATGATGCC+AGG + chr3_4:55587225-55587244 None:intergenic 55.0%
CCACGCCATGCATCCATAAC+CGG + chr3_4:55587309-55587328 None:intergenic 55.0%
TCTGCTTATGCATCAGCCCC+TGG - chr3_4:55587333-55587352 Msa0507930:intron 55.0%
AACAACCCACCCGATCGGGT+CGG - chr3_4:55581846-55581865 Msa0507930:three_prime_UTR 60.0%
CGGCCACGACATAAAGCCAC+GGG - chr3_4:55582233-55582252 Msa0507930:CDS 60.0%
GCTGCGTCAACACCAAAGGC+TGG + chr3_4:55584167-55584186 None:intergenic 60.0%
CAACTGGAGGTGGCACCCAA+TGG + chr3_4:55585391-55585410 None:intergenic 60.0%
! TTGGGTGCCACCTCCAGTTG+AGG - chr3_4:55585391-55585410 Msa0507930:intron 60.0%
GAAGGAGGCTCCTCAACTGG+AGG + chr3_4:55585404-55585423 None:intergenic 60.0%
CTGCCGTCAGCATGTCATCC+GGG + chr3_4:55585748-55585767 None:intergenic 60.0%
TGACATGCTGACGGCAGAGC+AGG - chr3_4:55585751-55585770 Msa0507930:intron 60.0%
GGGGTTAGATGAGATGGCCG+GGG - chr3_4:55587110-55587129 Msa0507930:intron 60.0%
TGGCCGGGGTCTCAATGAGA+AGG - chr3_4:55587124-55587143 Msa0507930:intron 60.0%
CCCTGGCATCATTGAACGCC+TGG - chr3_4:55587221-55587240 Msa0507930:CDS 60.0%
CCGGTTATGGATGCATGGCG+TGG - chr3_4:55587306-55587325 Msa0507930:intron 60.0%
ACAACCCACCCGATCGGGTC+GGG - chr3_4:55581847-55581866 Msa0507930:three_prime_UTR 65.0%
ATGGTGAGCCCCGACCCGAT+CGG + chr3_4:55581859-55581878 None:intergenic 65.0%
GGAGGCTCCTCAACTGGAGG+TGG + chr3_4:55585401-55585420 None:intergenic 65.0%
TTGGTGAGCGGACGAACGCG+TGG + chr3_4:55587003-55587022 None:intergenic 65.0%
CAACCCACCCGATCGGGTCG+GGG - chr3_4:55581848-55581867 Msa0507930:three_prime_UTR 70.0%
TGGTGAGCCCCGACCCGATC+GGG + chr3_4:55581858-55581877 None:intergenic 70.0%
GCGTGGCGCCTCAGCAGGTT+GGG + chr3_4:55586986-55587005 None:intergenic 70.0%
GAGCCCCGACCCGATCGGGT+GGG + chr3_4:55581854-55581873 None:intergenic 75.0%
TGAGCCCCGACCCGATCGGG+TGG + chr3_4:55581855-55581874 None:intergenic 75.0%
CGCGTGGCGCCTCAGCAGGT+TGG + chr3_4:55586987-55587006 None:intergenic 75.0%
CGAACGCGTGGCGCCTCAGC+AGG + chr3_4:55586991-55587010 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 55581793 55587677 55581793 ID=Msa0507930;Name=Msa0507930
chr3_4 mRNA 55581793 55587677 55581793 ID=Msa0507930-mRNA-1;Parent=Msa0507930;Name=Msa0507930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=174|0.76|0.64|1|0.69|0.71|14|234|684
chr3_4 exon 55581793 55582527 55581793 ID=Msa0507930-mRNA-1:exon:12372;Parent=Msa0507930-mRNA-1
chr3_4 exon 55582669 55582886 55582669 ID=Msa0507930-mRNA-1:exon:12371;Parent=Msa0507930-mRNA-1
chr3_4 exon 55582896 55583017 55582896 ID=Msa0507930-mRNA-1:exon:12370;Parent=Msa0507930-mRNA-1
chr3_4 exon 55583356 55583483 55583356 ID=Msa0507930-mRNA-1:exon:12369;Parent=Msa0507930-mRNA-1
chr3_4 exon 55583698 55583891 55583698 ID=Msa0507930-mRNA-1:exon:12368;Parent=Msa0507930-mRNA-1
chr3_4 exon 55583931 55584126 55583931 ID=Msa0507930-mRNA-1:exon:12367;Parent=Msa0507930-mRNA-1
chr3_4 exon 55584205 55584295 55584205 ID=Msa0507930-mRNA-1:exon:12366;Parent=Msa0507930-mRNA-1
chr3_4 exon 55584385 55584494 55584385 ID=Msa0507930-mRNA-1:exon:12365;Parent=Msa0507930-mRNA-1
chr3_4 exon 55585253 55585302 55585253 ID=Msa0507930-mRNA-1:exon:12364;Parent=Msa0507930-mRNA-1
chr3_4 exon 55585598 55585700 55585598 ID=Msa0507930-mRNA-1:exon:12363;Parent=Msa0507930-mRNA-1
chr3_4 exon 55586237 55586281 55586237 ID=Msa0507930-mRNA-1:exon:12362;Parent=Msa0507930-mRNA-1
chr3_4 exon 55586924 55587048 55586924 ID=Msa0507930-mRNA-1:exon:12361;Parent=Msa0507930-mRNA-1
chr3_4 exon 55587216 55587286 55587216 ID=Msa0507930-mRNA-1:exon:12360;Parent=Msa0507930-mRNA-1
chr3_4 exon 55587403 55587677 55587403 ID=Msa0507930-mRNA-1:exon:12359;Parent=Msa0507930-mRNA-1
chr3_4 five_prime_UTR 55587504 55587677 55587504 ID=Msa0507930-mRNA-1:five_prime_utr;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55587403 55587503 55587403 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55587216 55587286 55587216 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55586924 55587048 55586924 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55586237 55586281 55586237 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55585598 55585700 55585598 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55585253 55585302 55585253 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55584385 55584494 55584385 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55584205 55584295 55584205 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55583931 55584126 55583931 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55583698 55583891 55583698 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55583356 55583483 55583356 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55582896 55583017 55582896 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55582669 55582886 55582669 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 CDS 55582027 55582527 55582027 ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4 three_prime_UTR 55581793 55582026 55581793 ID=Msa0507930-mRNA-1:three_prime_utr;Parent=Msa0507930-mRNA-1
Gene Sequence

>Msa0507930

ATGCCTTTCATCTCCAAAATCCAACGCCAATCCGATTACAATCGCTTCAGTTCCGCCACTCCCATCGTTATCGACAATGGCGCTTCCTATTTCCGTATTGGATGGGCTGGTGAGTCTGAACCTCGTGTTGTTTTTCGCAACATTGTTCAACGGCCACGACATAAAGCCACGGGAGAAACTGTTACCATTGTTGGTGACCATGATCCAGCATTGTTGAAGTACTTTGATTGTACTCGCTCTGGACCACGATCAGCATTCGAAAGCGATGTTGTTTTTCAGTTTGAGATAATGGAATATATTCTGGACTTTGCTTTTGATCGAATGGGTGCAACAGGATCAGGGATTGATCATCCTATCCTGATCACAGAATGTGTATGCAACCCAGTTCAATCTCGAAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGTGTTGACGCAGCATTCAGCTATAAATATAACCAACAACGAAGTTTTGTTGACGGGGAACCAATTTATAAAGGAAGCTGTCGCACTAATATTGGTGGATTTCATGTGACTGATTATTTTCAGCGACTTCTTTCACTTAAATATCCTTATCATATGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATGTTGCACAGGATTATGTTTCAGAAGCTCGATTGTTTCTGAAAGGAGCTAAGGAGGCCGAAGAAAAAACCAAAATGTGGCAGCTCCATTGGGTGCCACCTCCAGTTGAGGAGCCTCCTTCTGAGGAAGAGATTGCGAGAAAGGCAGCAATAAGGGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCGAAGAGGTCATCAAAAATAAATGAGCTGGAAAATGAATTACGTGAGAGTGATGTACGATCCTTCTTAGCAGAGACTGGCTATGTCTCTAGGCAGGAAGTAGAATCTGCCCGTAGTAAAGTTGTGCAGTCCTTGCGGAAACAAAAAGGTGAGCAAACTGAAATTGAAAAACCTGACGCTGCGTCTAATGAGAAGTATACGCTTATAAACATCCCGGATGACATGCTGACGGCAGAGCAGCTTGTTGAAAAGAGGAAACAGCTGTCAATTAAATCTATGTCCGATGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAAAGGGAAAGGAAACAACAGCTAGAAGAGGAGAGACGCCTGGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAATACAAGGACCTTTCGGAGAAAATTGACCAACGTAAACGACTCAAAACAAATGGAGGCTCCTCCACGAATGGAAATGGAAATAGTAGTGTTGGTCGTGGTGAGAGACTCAGTGCTGCTCAAAGGGAGAGAATGCGCCTCCTGACAACTGCTGCCTTTGATCGTGGTAAGGGCGAGGATACATTTGGTGCCAAAGACGAAGATTGGCAACTTTACAAATTGATGAGCAAAGATAATGATGACGATGACGATGAACCAGATGAGGATAACACAGAGCTTGCCCGCATCTCTTCAAGGCTCCAGGACTTGGATCCAACATTTGTGCCCAAGGTAGAAAGTAGCTCCCAACCTGCTGAGGCGCCACGCGTTCGTCCGCTCACCAAAGAAGATTTTCAGATTGTTTTCGGAGTTGAAAGGTTTAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGAGTTGATCAGGTGGGGTTAGATGAGATGGCCGGGGTCTCAATGAGAAGGTTATCATGTAAGGATGAAAAGCTGGAACAGAGAATGACTAATTCCATACTTGTGACTGGTGGAAGCTCTCTTTTCCCTGGCATCATTGAACGCCTGGAAGCTGGAATTCGGATGATTAGACCCTGCGGTTCGCCTATAAAAATAGTTAGAGCACTTGATCCGGTTATGGATGCATGGCGTGGTGCGTCTGCTTATGCATCAGCCCCTGGTTTCCACACACAAACATTCACTAGGATGGATTATTATGAAAAAGGTGAAGATTGGCTTCGTAATTATCAACTGAAATATTCATTGTAA
Protein sequence

>Msa0507930

MPFISKIQRQSDYNRFSSATPIVIDNGASYFRIGWAGESEPRVVFRNIVQRPRHKATGETVTIVGDHDPALLKYFDCTRSGPRSAFESDVVFQFEIMEYILDFAFDRMGATGSGIDHPILITECVCNPVQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQRSFVDGEPIYKGSCRTNIGGFHVTDYFQRLLSLKYPYHMARFTWEKVEDLKMEHCYVAQDYVSEARLFLKGAKEAEEKTKMWQLHWVPPPVEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSKINELENELRESDVRSFLAETGYVSRQEVESARSKVVQSLRKQKGEQTEIEKPDAASNEKYTLINIPDDMLTAEQLVEKRKQLSIKSMSDGRQRLKQKRYEEELERERKQQLEEERRLENPELYLEQLRAKYKDLSEKIDQRKRLKTNGGSSTNGNGNSSVGRGERLSAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDDEPDEDNTELARISSRLQDLDPTFVPKVESSSQPAEAPRVRPLTKEDFQIVFGVERFRCPEILFSPNWIGVDQVGLDEMAGVSMRRLSCKDEKLEQRMTNSILVTGGSSLFPGIIERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGASAYASAPGFHTQTFTRMDYYEKGEDWLRNYQLKYSL*