AlfalfaGEDB | Msa0507930

M. sativa cultivar zhongmu-4 / Msa0507930

KEGG: K11672
GO: -
PFAM: PF00022.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507930	XP_013460687.1	94.306	720	5	3	1	684	1	720	0.0	1378

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507930	sp\|Q940Z2\|ARP5_ARATH	69.475	724	178	6	1	683	1	722	0.0	1008

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507930	A0A072UZ49	94.306	720	5	3	1	684	1	720	0.0	1378

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0368550	Msa0507930	0.829083	6.277395e-55	-8.615850e-47
Msa0461560	Msa0507930	0.845152	4.852314e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507930	MtrunA17_Chr3g0111971	94.306	720	5	3	1	684	1	720	0.0	1378
Msa0507930	MtrunA17_Chr3g0129641	31.325	249	136	10	21	247	9	244	7.66e-19	89.0
Msa0507930	MtrunA17_Chr3g0129641	34.426	122	77	2	550	671	250	368	8.88e-16	79.7
Msa0507930	MtrunA17_Chr6g0448881	31.416	226	124	9	21	224	9	225	1.49e-18	88.2
Msa0507930	MtrunA17_Chr6g0448881	31.967	122	80	2	550	671	250	368	5.99e-15	77.4
Msa0507930	MtrunA17_Chr2g0305361	36.620	142	85	2	530	671	292	428	2.32e-18	88.2
Msa0507930	MtrunA17_Chr7g0258721	30.488	246	142	9	21	247	9	244	3.56e-18	87.0
Msa0507930	MtrunA17_Chr7g0258721	34.426	122	77	2	550	671	250	368	1.32e-15	79.3
Msa0507930	MtrunA17_Chr2g0278591	30.973	226	125	9	21	224	9	225	3.69e-18	87.0
Msa0507930	MtrunA17_Chr2g0278591	34.426	122	77	2	550	671	250	368	1.23e-15	79.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0507930	AT3G12380.1	69.475	724	178	6	1	683	1	722	0.0	1008
Msa0507930	AT3G12380.2	68.904	730	178	7	1	683	1	728	0.0	1001
Msa0507930	AT2G42100.1	31.602	231	121	9	19	224	8	226	3.08e-19	90.9
Msa0507930	AT2G42100.1	33.607	122	78	2	550	671	251	369	1.58e-14	76.3
Msa0507930	AT3G53750.1	31.325	249	136	10	21	247	9	244	3.28e-19	90.5
Msa0507930	AT3G53750.1	32.787	122	79	2	550	671	250	368	7.76e-15	77.4
Msa0507930	AT3G53750.2	31.325	249	136	10	21	247	9	244	3.28e-19	90.5
Msa0507930	AT3G53750.2	32.787	122	79	2	550	671	250	368	7.76e-15	77.4
Msa0507930	AT2G37620.1	31.325	249	136	10	21	247	9	244	3.28e-19	90.5
Msa0507930	AT2G37620.1	32.787	122	79	2	550	671	250	368	7.76e-15	77.4

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Find 193 sgRNAs with CRISPR-Local

Find 429 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAGAAGCGCTATGAAG+AGG	0.582251	3_4:-55583402	Msa0507930:CDS
AAACGACTCAAAACAAATGG+AGG	0.653455	3_4:-55582922	Msa0507930:CDS
AAACTGGATTGGAGTTGATC+AGG	0.466958	3_4:-55582362	Msa0507930:CDS
AAAGGTTGAAGACCTGAAGA+TGG	0.546155	3_4:-55584255	Msa0507930:CDS
AAAGTATTAGTACCTATAGA+TGG	0.446199	3_4:+55585585	None:intergenic
AACAACCCACCCGATCGGGT+CGG	0.592888	3_4:-55587602	Msa0507930:five_prime_UTR
AACAATCTGAAAATCTTCTT+TGG	0.277742	3_4:+55582429	None:intergenic
AACGCCTGGAAGCTGGAATT+CGG	0.436950	3_4:-55582213	Msa0507930:CDS
AAGAATCTAAGTAGCAGACA+TGG	0.636385	3_4:+55587573	None:intergenic
AAGAGGAATTGGAAAGGGAA+AGG	0.571587	3_4:-55583385	Msa0507930:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCTAATTTCACTTCAAAACT+CGG	-	chr3_4:55582082-55582101	Msa0507930:CDS	30.0%
GTCTATGTTTAGCAAACATA+AGG	-	chr3_4:55582343-55582362	Msa0507930:CDS	30.0%
GCAAACATAAGGTTAATTGT+TGG	-	chr3_4:55582354-55582373	Msa0507930:CDS	30.0%
TACAATTATGTGAGTATAGG+AGG	-	chr3_4:55582561-55582580	Msa0507930:intron	30.0%
ATAGGTCACTACATCAAAAT+AGG	+	chr3_4:55582604-55582623	None:intergenic	30.0%
CATAAGTTCAAACCTATCTA+TGG	+	chr3_4:55582699-55582718	None:intergenic	30.0%
TGAATTGAAGTGAGACAATA+AGG	-	chr3_4:55582967-55582986	Msa0507930:CDS	30.0%
GAATGTAACCATATGTTCAT+AGG	-	chr3_4:55583022-55583041	Msa0507930:intron	30.0%
GTTATGAACCTATGAACATA+TGG	+	chr3_4:55583033-55583052	None:intergenic	30.0%
TAGGTTCATAACAACTAGTT+AGG	-	chr3_4:55583041-55583060	Msa0507930:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	55581793	55587677	55581793	ID=Msa0507930;Name=Msa0507930
chr3_4	mRNA	55581793	55587677	55581793	ID=Msa0507930-mRNA-1;Parent=Msa0507930;Name=Msa0507930-mRNA-1;_AED=0.10;_eAED=0.10;_QI=174\|0.76\|0.64\|1\|0.69\|0.71\|14\|234\|684
chr3_4	exon	55581793	55582527	55581793	ID=Msa0507930-mRNA-1:exon:12372;Parent=Msa0507930-mRNA-1
chr3_4	exon	55582669	55582886	55582669	ID=Msa0507930-mRNA-1:exon:12371;Parent=Msa0507930-mRNA-1
chr3_4	exon	55582896	55583017	55582896	ID=Msa0507930-mRNA-1:exon:12370;Parent=Msa0507930-mRNA-1
chr3_4	exon	55583356	55583483	55583356	ID=Msa0507930-mRNA-1:exon:12369;Parent=Msa0507930-mRNA-1
chr3_4	exon	55583698	55583891	55583698	ID=Msa0507930-mRNA-1:exon:12368;Parent=Msa0507930-mRNA-1
chr3_4	exon	55583931	55584126	55583931	ID=Msa0507930-mRNA-1:exon:12367;Parent=Msa0507930-mRNA-1
chr3_4	exon	55584205	55584295	55584205	ID=Msa0507930-mRNA-1:exon:12366;Parent=Msa0507930-mRNA-1
chr3_4	exon	55584385	55584494	55584385	ID=Msa0507930-mRNA-1:exon:12365;Parent=Msa0507930-mRNA-1
chr3_4	exon	55585253	55585302	55585253	ID=Msa0507930-mRNA-1:exon:12364;Parent=Msa0507930-mRNA-1
chr3_4	exon	55585598	55585700	55585598	ID=Msa0507930-mRNA-1:exon:12363;Parent=Msa0507930-mRNA-1
chr3_4	exon	55586237	55586281	55586237	ID=Msa0507930-mRNA-1:exon:12362;Parent=Msa0507930-mRNA-1
chr3_4	exon	55586924	55587048	55586924	ID=Msa0507930-mRNA-1:exon:12361;Parent=Msa0507930-mRNA-1
chr3_4	exon	55587216	55587286	55587216	ID=Msa0507930-mRNA-1:exon:12360;Parent=Msa0507930-mRNA-1
chr3_4	exon	55587403	55587677	55587403	ID=Msa0507930-mRNA-1:exon:12359;Parent=Msa0507930-mRNA-1
chr3_4	five_prime_UTR	55587504	55587677	55587504	ID=Msa0507930-mRNA-1:five_prime_utr;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55587403	55587503	55587403	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55587216	55587286	55587216	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55586924	55587048	55586924	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55586237	55586281	55586237	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55585598	55585700	55585598	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55585253	55585302	55585253	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55584385	55584494	55584385	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55584205	55584295	55584205	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55583931	55584126	55583931	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55583698	55583891	55583698	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55583356	55583483	55583356	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55582896	55583017	55582896	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55582669	55582886	55582669	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	CDS	55582027	55582527	55582027	ID=Msa0507930-mRNA-1:cds;Parent=Msa0507930-mRNA-1
chr3_4	three_prime_UTR	55581793	55582026	55581793	ID=Msa0507930-mRNA-1:three_prime_utr;Parent=Msa0507930-mRNA-1

Gene Sequence

>Msa0507930

ATGCCTTTCATCTCCAAAATCCAACGCCAATCCGATTACAATCGCTTCAGTTCCGCCACTCCCATCGTTATCGACAATGGCGCTTCCTATTTCCGTATTGGATGGGCTGGTGAGTCTGAACCTCGTGTTGTTTTTCGCAACATTGTTCAACGGCCACGACATAAAGCCACGGGAGAAACTGTTACCATTGTTGGTGACCATGATCCAGCATTGTTGAAGTACTTTGATTGTACTCGCTCTGGACCACGATCAGCATTCGAAAGCGATGTTGTTTTTCAGTTTGAGATAATGGAATATATTCTGGACTTTGCTTTTGATCGAATGGGTGCAACAGGATCAGGGATTGATCATCCTATCCTGATCACAGAATGTGTATGCAACCCAGTTCAATCTCGAAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGTGTTGACGCAGCATTCAGCTATAAATATAACCAACAACGAAGTTTTGTTGACGGGGAACCAATTTATAAAGGAAGCTGTCGCACTAATATTGGTGGATTTCATGTGACTGATTATTTTCAGCGACTTCTTTCACTTAAATATCCTTATCATATGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATGTTGCACAGGATTATGTTTCAGAAGCTCGATTGTTTCTGAAAGGAGCTAAGGAGGCCGAAGAAAAAACCAAAATGTGGCAGCTCCATTGGGTGCCACCTCCAGTTGAGGAGCCTCCTTCTGAGGAAGAGATTGCGAGAAAGGCAGCAATAAGGGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCGAAGAGGTCATCAAAAATAAATGAGCTGGAAAATGAATTACGTGAGAGTGATGTACGATCCTTCTTAGCAGAGACTGGCTATGTCTCTAGGCAGGAAGTAGAATCTGCCCGTAGTAAAGTTGTGCAGTCCTTGCGGAAACAAAAAGGTGAGCAAACTGAAATTGAAAAACCTGACGCTGCGTCTAATGAGAAGTATACGCTTATAAACATCCCGGATGACATGCTGACGGCAGAGCAGCTTGTTGAAAAGAGGAAACAGCTGTCAATTAAATCTATGTCCGATGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAAAGGGAAAGGAAACAACAGCTAGAAGAGGAGAGACGCCTGGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAATACAAGGACCTTTCGGAGAAAATTGACCAACGTAAACGACTCAAAACAAATGGAGGCTCCTCCACGAATGGAAATGGAAATAGTAGTGTTGGTCGTGGTGAGAGACTCAGTGCTGCTCAAAGGGAGAGAATGCGCCTCCTGACAACTGCTGCCTTTGATCGTGGTAAGGGCGAGGATACATTTGGTGCCAAAGACGAAGATTGGCAACTTTACAAATTGATGAGCAAAGATAATGATGACGATGACGATGAACCAGATGAGGATAACACAGAGCTTGCCCGCATCTCTTCAAGGCTCCAGGACTTGGATCCAACATTTGTGCCCAAGGTAGAAAGTAGCTCCCAACCTGCTGAGGCGCCACGCGTTCGTCCGCTCACCAAAGAAGATTTTCAGATTGTTTTCGGAGTTGAAAGGTTTAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGAGTTGATCAGGTGGGGTTAGATGAGATGGCCGGGGTCTCAATGAGAAGGTTATCATGTAAGGATGAAAAGCTGGAACAGAGAATGACTAATTCCATACTTGTGACTGGTGGAAGCTCTCTTTTCCCTGGCATCATTGAACGCCTGGAAGCTGGAATTCGGATGATTAGACCCTGCGGTTCGCCTATAAAAATAGTTAGAGCACTTGATCCGGTTATGGATGCATGGCGTGGTGCGTCTGCTTATGCATCAGCCCCTGGTTTCCACACACAAACATTCACTAGGATGGATTATTATGAAAAAGGTGAAGATTGGCTTCGTAATTATCAACTGAAATATTCATTGTAA

Protein sequence

>Msa0507930

MPFISKIQRQSDYNRFSSATPIVIDNGASYFRIGWAGESEPRVVFRNIVQRPRHKATGETVTIVGDHDPALLKYFDCTRSGPRSAFESDVVFQFEIMEYILDFAFDRMGATGSGIDHPILITECVCNPVQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQRSFVDGEPIYKGSCRTNIGGFHVTDYFQRLLSLKYPYHMARFTWEKVEDLKMEHCYVAQDYVSEARLFLKGAKEAEEKTKMWQLHWVPPPVEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSKINELENELRESDVRSFLAETGYVSRQEVESARSKVVQSLRKQKGEQTEIEKPDAASNEKYTLINIPDDMLTAEQLVEKRKQLSIKSMSDGRQRLKQKRYEEELERERKQQLEEERRLENPELYLEQLRAKYKDLSEKIDQRKRLKTNGGSSTNGNGNSSVGRGERLSAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDDEPDEDNTELARISSRLQDLDPTFVPKVESSSQPAEAPRVRPLTKEDFQIVFGVERFRCPEILFSPNWIGVDQVGLDEMAGVSMRRLSCKDEKLEQRMTNSILVTGGSSLFPGIIERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGASAYASAPGFHTQTFTRMDYYEKGEDWLRNYQLKYSL*