AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0461560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0461560 MtrunA17_Chr3g0111971 94.444 720 4 3 1 684 1 720 0.0 1380
Msa0461560 MtrunA17_Chr3g0129641 31.325 249 136 10 21 247 9 244 7.39e-19 89.4
Msa0461560 MtrunA17_Chr3g0129641 34.426 122 77 2 550 671 250 368 8.80e-16 79.7
Msa0461560 MtrunA17_Chr6g0448881 31.416 226 124 9 21 224 9 225 1.52e-18 88.2
Msa0461560 MtrunA17_Chr6g0448881 31.967 122 80 2 550 671 250 368 6.04e-15 77.4
Msa0461560 MtrunA17_Chr2g0305361 36.620 142 85 2 530 671 292 428 2.40e-18 88.2
Msa0461560 MtrunA17_Chr7g0258721 30.488 246 142 9 21 247 9 244 3.40e-18 87.0
Msa0461560 MtrunA17_Chr7g0258721 34.426 122 77 2 550 671 250 368 1.36e-15 79.3
Msa0461560 MtrunA17_Chr2g0278591 30.973 226 125 9 21 224 9 225 3.52e-18 87.0
Msa0461560 MtrunA17_Chr2g0278591 34.426 122 77 2 550 671 250 368 1.26e-15 79.3
Msa0461560 MtrunA17_Chr7g0223901 30.081 246 143 9 21 247 9 244 4.63e-18 86.7
Msa0461560 MtrunA17_Chr7g0223901 33.607 122 78 2 550 671 250 368 3.91e-15 77.8
Msa0461560 MtrunA17_Chr1g0175391 30.973 226 125 9 21 224 9 225 2.48e-17 84.3
Msa0461560 MtrunA17_Chr1g0175391 33.607 122 78 2 550 671 250 368 3.24e-15 78.2
Msa0461560 MtrunA17_Chr2g0328091 30.531 226 126 9 21 224 9 225 9.97e-17 82.8
Msa0461560 MtrunA17_Chr2g0328091 33.607 122 78 2 550 671 250 368 7.08e-16 80.1
Msa0461560 MtrunA17_Chr7g0224401 26.471 238 146 5 18 233 3 233 2.14e-12 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0461560 AT3G12380.1 69.475 724 178 6 1 683 1 722 0.0 1008
Msa0461560 AT3G12380.2 68.904 730 178 7 1 683 1 728 0.0 1001
Msa0461560 AT2G42100.1 31.602 231 121 9 19 224 8 226 2.63e-19 90.9
Msa0461560 AT2G42100.1 33.607 122 78 2 550 671 251 369 1.51e-14 76.6
Msa0461560 AT3G53750.1 31.325 249 136 10 21 247 9 244 3.34e-19 90.5
Msa0461560 AT3G53750.1 32.787 122 79 2 550 671 250 368 7.69e-15 77.4
Msa0461560 AT3G53750.2 31.325 249 136 10 21 247 9 244 3.34e-19 90.5
Msa0461560 AT3G53750.2 32.787 122 79 2 550 671 250 368 7.69e-15 77.4
Msa0461560 AT2G37620.1 31.325 249 136 10 21 247 9 244 3.34e-19 90.5
Msa0461560 AT2G37620.1 32.787 122 79 2 550 671 250 368 7.69e-15 77.4
Msa0461560 AT2G37620.3 31.325 249 136 10 21 247 9 244 3.34e-19 90.5
Msa0461560 AT2G37620.3 32.787 122 79 2 550 671 250 368 7.69e-15 77.4
Msa0461560 AT2G37620.2 31.325 249 136 10 21 247 9 244 3.34e-19 90.5
Msa0461560 AT2G37620.2 32.787 122 79 2 550 671 250 368 7.69e-15 77.4
Msa0461560 AT2G37620.4 31.325 249 136 10 21 247 9 244 3.34e-19 90.5
Msa0461560 AT2G37620.4 32.787 122 79 2 550 671 250 368 7.69e-15 77.4
Msa0461560 AT5G09810.1 31.325 249 136 10 21 247 9 244 9.56e-19 89.4
Msa0461560 AT5G09810.1 34.426 122 77 2 550 671 250 368 2.07e-15 79.0
Msa0461560 AT3G12110.1 31.416 226 124 9 21 224 9 225 2.74e-18 87.8
Msa0461560 AT3G12110.1 32.787 122 79 2 550 671 250 368 8.57e-15 77.0
Msa0461560 AT3G33520.1 38.525 122 72 1 555 676 298 416 4.31e-18 87.8
Msa0461560 AT3G46520.2 29.915 234 123 9 21 227 9 228 9.64e-18 86.3
Msa0461560 AT3G46520.2 32.787 122 79 2 550 671 250 368 1.19e-13 73.6
Msa0461560 AT3G46520.1 29.915 234 123 9 21 227 9 228 9.64e-18 86.3
Msa0461560 AT3G46520.1 32.787 122 79 2 550 671 250 368 1.19e-13 73.6
Msa0461560 AT3G18780.1 31.416 226 124 9 21 224 9 225 3.00e-17 84.7
Msa0461560 AT3G18780.1 33.333 108 69 2 550 657 250 354 4.21e-13 72.0
Msa0461560 AT5G59370.2 29.487 234 124 9 21 227 9 228 3.18e-17 84.7
Msa0461560 AT5G59370.2 32.787 122 79 2 550 671 250 368 1.30e-13 73.6
Msa0461560 AT5G59370.1 29.487 234 124 9 21 227 9 228 3.18e-17 84.7
Msa0461560 AT5G59370.1 32.787 122 79 2 550 671 250 368 1.30e-13 73.6
Msa0461560 AT3G18780.2 31.416 226 124 9 21 224 9 225 3.27e-17 84.7
Msa0461560 AT3G18780.2 31.967 122 80 2 550 671 250 368 1.49e-14 76.6
Msa0461560 AT3G18780.3 31.416 226 124 9 21 224 9 225 3.27e-17 84.7
Msa0461560 AT3G18780.3 31.967 122 80 2 550 671 250 368 1.49e-14 76.6
Msa0461560 AT1G49240.1 30.303 231 120 9 21 224 9 225 3.30e-17 84.7
Msa0461560 AT1G49240.1 31.967 122 80 2 550 671 250 368 1.43e-14 76.6
Msa0461560 AT2G42090.1 28.279 244 139 10 21 247 3 227 1.48e-16 82.4
Msa0461560 AT2G42090.1 33.333 123 79 2 549 671 238 357 1.42e-12 70.1
Msa0461560 AT2G42170.5 33.607 122 78 2 550 671 104 222 3.77e-14 72.8
Msa0461560 AT2G42170.1 33.607 122 78 2 550 671 202 320 7.35e-14 73.9
Msa0461560 AT2G42170.1 33.858 127 66 5 116 227 57 180 1.80e-11 66.6
Msa0461560 AT2G42170.3 33.607 122 78 2 550 671 202 320 7.35e-14 73.9
Msa0461560 AT2G42170.3 33.858 127 66 5 116 227 57 180 1.80e-11 66.6
Msa0461560 AT3G27000.1 27.234 235 140 7 22 233 7 233 9.59e-14 73.9
Msa0461560 AT2G42170.4 35.577 104 64 2 550 653 202 302 1.07e-11 67.0
Msa0461560 AT2G42170.4 33.871 124 64 5 116 224 57 177 1.19e-11 67.0
Msa0461560 AT2G42170.2 35.577 104 64 2 550 653 202 302 1.07e-11 67.0
Msa0461560 AT2G42170.2 33.871 124 64 5 116 224 57 177 1.19e-11 67.0

Find 193 sgRNAs with CRISPR-Local

Find 439 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCGGATTGGCGTTGGATTT+TGG 0.159254 3_3:+59862299 None:intergenic
TTCAGAAGCTCGATTGTTTC+TGG 0.165498 3_3:-59858986 Msa0461560:intron
CGACAGCTTCCTTTATAAAT+TGG 0.189204 3_3:+59859239 None:intergenic
CTCCGAAAGGTCCTTGTATT+TGG 0.211732 3_3:+59857732 None:intergenic
CCAATGGAGCTGCCACATTT+TGG 0.236456 3_3:+59858858 None:intergenic
TTTGGACTGAACAAAATTTC+AGG 0.251702 3_3:+59857154 None:intergenic
AACAATCTGAAAATCTTCTT+TGG 0.277742 3_3:+59857201 None:intergenic
TTCTTGTGAGAAAGTGAAAT+TGG 0.290408 3_3:+59862475 None:intergenic
GCGCTTCCTATTTCCGTATT+GGG 0.313695 3_3:-59862233 Msa0461560:intron
AGGATGGATTATTATGAAAA+AGG 0.324137 3_3:-59856842 Msa0461560:CDS
AGAGTACCCAATACGGAAAT+AGG 0.331001 3_3:+59862227 None:intergenic
CGAATGGGTGCAACAGGATC+AGG 0.331988 3_3:-59861069 Msa0461560:CDS
TCCTAGCTTCAGCAACAATA+TGG 0.343234 3_3:+59856685 None:intergenic
AGTTCAATCTCGAAGTAAAA+TGG 0.346799 3_3:-59860468 Msa0461560:CDS
CCAAAATGTGGCAGCTCCAT+TGG 0.349845 3_3:-59858858 Msa0461560:CDS
CATAACAATGTTCCATCTTC+AGG 0.350576 3_3:+59859025 None:intergenic
TTGCGAGAAAGGCAGCAATA+AGG 0.354563 3_3:-59858795 Msa0461560:CDS
GGCGCTTCCTATTTCCGTAT+TGG 0.360049 3_3:-59862234 Msa0461560:CDS
AAGTTGCCAATCTTCATCTT+TGG 0.360116 3_3:+59857531 None:intergenic
GGAAGCTGTCGCACTAATAT+TGG 0.366748 3_3:-59859227 Msa0461560:CDS
GACGGGGAACCAATTTATAA+AGG 0.369369 3_3:-59859248 Msa0461560:CDS
TAGAGCACTTGATCCGGTTA+TGG 0.370466 3_3:-59856927 Msa0461560:CDS
TCAGAAGGAGGCTCCTCAAC+TGG 0.380356 3_3:+59858826 None:intergenic
CAGTCCTTGCGGAAACAAAA+AGG 0.381377 3_3:-59858571 Msa0461560:CDS
ACAACCCACCCGATCGGGTC+GGG 0.388044 3_3:-59862432 Msa0461560:five_prime_UTR
GGCTCCTCCACGAATGGAAA+TGG 0.391186 3_3:-59857673 Msa0461560:CDS
GCTTCCACCAGTCACAAGTA+TGG 0.392619 3_3:+59857030 None:intergenic
TTTGATCGAATGGGTGCAAC+AGG 0.394008 3_3:-59861075 Msa0461560:CDS
TGGAAAGTTAGTTAGATTGC+TGG 0.400077 3_3:+59856705 None:intergenic
TTTGATAGCTTGTTGAAAAG+AGG 0.403014 3_3:-59858247 Msa0461560:intron
AGGTCAAAGGTTGCGAGAAA+TGG 0.404209 3_3:-59858764 Msa0461560:CDS
GCGTGGCGCCTCAGCAGGTT+GGG 0.405100 3_3:+59857237 None:intergenic
AGCTCTGTGTTATCCTCATC+TGG 0.405219 3_3:+59857466 None:intergenic
GAAGCGCTATGAAGAGGAAT+TGG 0.405469 3_3:-59858174 Msa0461560:CDS
AATTGTTCCAAGTAAAGCTC+TGG 0.406389 3_3:+59857760 None:intergenic
TGGGAGCTACTTTCTACCTT+GGG 0.410072 3_3:+59857256 None:intergenic
TGATCAACTCCAATCCAGTT+TGG 0.410760 3_3:+59857136 None:intergenic
TTGGGAGCTACTTTCTACCT+TGG 0.411598 3_3:+59857255 None:intergenic
TGCCAAATACAAGGACCTTT+CGG 0.412730 3_3:-59857734 Msa0461560:CDS
GGAGAAACTGTTACCATTGT+TGG 0.413207 3_3:-59861857 Msa0461560:CDS
TGCGAGAAAGGCAGCAATAA+GGG 0.413882 3_3:-59858794 Msa0461560:CDS
CTTTAACAACCCACCCGATC+GGG 0.418323 3_3:-59862437 Msa0461560:five_prime_UTR
TATCACAAACACTTCGTTGT+TGG 0.429773 3_3:+59860074 None:intergenic
TGCTGCCTTTGATCGTGGTA+AGG 0.430300 3_3:-59857572 Msa0461560:CDS
CCCTGGCATCATTGAACGCC+TGG 0.431968 3_3:-59856999 Msa0461560:CDS
TGAGGAAGAGATTGCGAGAA+AGG 0.434305 3_3:-59858806 Msa0461560:CDS
CGAACGCGTGGCGCCTCAGC+AGG 0.435514 3_3:+59857232 None:intergenic
AACGCCTGGAAGCTGGAATT+CGG 0.436950 3_3:-59856985 Msa0461560:CDS
TCATCCGAATTCCAGCTTCC+AGG 0.437442 3_3:+59856981 None:intergenic
CCACGCCATGCATCCATAAC+CGG 0.439157 3_3:+59856914 None:intergenic
TACTTTGATTGTACTCGCTC+TGG 0.441154 3_3:-59861809 Msa0461560:CDS
GATCAAAGGCAGCAGTTGTC+AGG 0.443054 3_3:+59857581 None:intergenic
ACTATTTCCATTTCCATTCG+TGG 0.445874 3_3:+59857666 None:intergenic
AAAGTATTAGTACCTATAGA+TGG 0.446199 3_3:+59860416 None:intergenic
ACTTATGGAGTTCCATCTAT+AGG 0.448061 3_3:-59860428 Msa0461560:intron
GGAACTGAAGCGATTGTAAT+CGG 0.451537 3_3:+59862281 None:intergenic
TTGGTGCCAAAGATGAAGAT+TGG 0.451676 3_3:-59857537 Msa0461560:CDS
CGCGTGGCGCCTCAGCAGGT+TGG 0.453077 3_3:+59857236 None:intergenic
ATCATTGAACGCCTGGAAGC+TGG 0.453300 3_3:-59856992 Msa0461560:CDS
TCTGCCGTCAGCATGTCATC+CGG 0.453326 3_3:+59858484 None:intergenic
TTCTCATTAGACGCAGCGTC+AGG 0.453339 3_3:+59858526 None:intergenic
TCTGCTTATGCATCAGCCCC+TGG 0.455002 3_3:-59856887 Msa0461560:CDS
TGCATACACATTCTGTGATC+AGG 0.456220 3_3:+59860495 None:intergenic
TTGGACTGAACAAAATTTCA+GGG 0.458568 3_3:+59857155 None:intergenic
CGTAAACGACTCAAAACAAA+TGG 0.459916 3_3:-59857697 Msa0461560:CDS
AATGAGAAGGTTATCATGTA+AGG 0.466365 3_3:-59857083 Msa0461560:CDS
AAACTGGATTGGAGTTGATC+AGG 0.466958 3_3:-59857134 Msa0461560:CDS
AGCTTGCCCGCATCTCTTCA+AGG 0.467261 3_3:-59857447 Msa0461560:CDS
GGCTAGATTTACATGGGAAA+AGG 0.468160 3_3:-59859055 Msa0461560:CDS
TGACATGCTGACGGCAGAGC+AGG 0.469962 3_3:-59858479 Msa0461560:intron
TCTACCTTGGGCACAAATGT+TGG 0.469972 3_3:+59857268 None:intergenic
GGAGAACCCAGAGCTTTACT+TGG 0.470796 3_3:-59857767 Msa0461560:CDS
CCGCATCTCTTCAAGGCTCC+AGG 0.473430 3_3:-59857440 Msa0461560:intron
TGGTGAGCCCCGACCCGATC+GGG 0.474643 3_3:+59862424 None:intergenic
CAAAATGTGGCAGCTCCATT+GGG 0.477487 3_3:-59858857 Msa0461560:CDS
GAGACTCAGTGCTGCTCAAA+GGG 0.484024 3_3:-59857617 Msa0461560:CDS
TCAAAGTACTTCAACAATGC+TGG 0.488489 3_3:+59861824 None:intergenic
TCCAGGCGTTCAATGATGCC+AGG 0.491307 3_3:+59856998 None:intergenic
TTGTTCAGTCCAAACTGGAT+TGG 0.495233 3_3:-59857145 Msa0461560:CDS
ATCATGTAAGGATGAAAAGC+TGG 0.497771 3_3:-59857071 Msa0461560:CDS
ATAGCCAGTCTCTGCTAAGA+AGG 0.501279 3_3:+59858636 None:intergenic
AATAGTTAGAGCACTTGATC+CGG 0.502102 3_3:-59856933 Msa0461560:CDS
GGTAAGGGCGAGGATACATT+TGG 0.505021 3_3:-59857556 Msa0461560:CDS
TGGGGTTAGATGAGATGGCC+GGG 0.510141 3_3:-59857111 Msa0461560:CDS
TTTCACACTCACATATGATA+AGG 0.513121 3_3:+59859155 None:intergenic
GCGATTTAAGAAGTTGAAGA+TGG 0.513798 3_3:+59862376 None:intergenic
CGATCCTTCTTAGCAGAGAC+TGG 0.517740 3_3:-59858640 Msa0461560:CDS
CTCGCAATCTCTTCCTCAGA+AGG 0.518831 3_3:+59858811 None:intergenic
AATACAGGGCTAGATTTACA+TGG 0.523587 3_3:-59859062 Msa0461560:intron
TTTCATTCTCCTCTCATGTG+AGG 0.524451 3_3:-59856574 Msa0461560:three_prime_UTR
ACTTCAACAATGCTGGATCA+TGG 0.526588 3_3:+59861831 None:intergenic
GATTGTAATCGGATTGGCGT+TGG 0.527135 3_3:+59862292 None:intergenic
TCAATTAAATCTATGTCCGA+TGG 0.528487 3_3:-59858215 Msa0461560:CDS
CTGCCGTCAGCATGTCATCC+GGG 0.530851 3_3:+59858485 None:intergenic
CAGAGACTGGCTATGTCTCT+AGG 0.531810 3_3:-59858627 Msa0461560:CDS
CAACCCACCCGATCGGGTCG+GGG 0.531989 3_3:-59862431 Msa0461560:five_prime_UTR
TTGGGTGCCACCTCCAGTTG+AGG 0.532459 3_3:-59858839 Msa0461560:CDS
CACACAAACATTCACTAGGA+TGG 0.534118 3_3:-59856858 Msa0461560:CDS
CTCGCCCTTACCACGATCAA+AGG 0.535951 3_3:+59857567 None:intergenic
GACTGGCTATGTCTCTAGGC+AGG 0.538143 3_3:-59858623 Msa0461560:CDS
TCTTCAACTTCTTAAATCGC+AGG 0.539615 3_3:-59862373 Msa0461560:five_prime_UTR
AGGACTGCACAACTTTACTA+CGG 0.540370 3_3:+59858587 None:intergenic
AATGTTTGTGTGTGGAAACC+AGG 0.541962 3_3:+59856869 None:intergenic
CAACTGGAGGTGGCACCCAA+TGG 0.542988 3_3:+59858842 None:intergenic
GGAGGCTCCTCAACTGGAGG+TGG 0.543167 3_3:+59858832 None:intergenic
AGCTGTCGCACTAATATTGG+TGG 0.543175 3_3:-59859224 Msa0461560:CDS
ACAATTGCGTGCCAAATACA+AGG 0.543355 3_3:-59857743 Msa0461560:CDS
AGAGACTCAGTGCTGCTCAA+AGG 0.543891 3_3:-59857618 Msa0461560:CDS
AATGGAGGCTCCTCCACGAA+TGG 0.545578 3_3:-59857679 Msa0461560:CDS
CTGGAGCCTTGAAGAGATGC+GGG 0.545647 3_3:+59857441 None:intergenic
AAAGGTTGAAGACCTGAAGA+TGG 0.546155 3_3:-59859037 Msa0461560:CDS
GTGGGGTTAGATGAGATGGC+CGG 0.546632 3_3:-59857112 Msa0461560:CDS
TCCATATTGTTGCTGAAGCT+AGG 0.549499 3_3:-59856686 Msa0461560:three_prime_UTR
TGAGCCCCGACCCGATCGGG+TGG 0.549539 3_3:+59862427 None:intergenic
GGAACATTGTTATGTTGCAC+AGG 0.549607 3_3:-59859016 Msa0461560:CDS
ACTTTAACAACCCACCCGAT+CGG 0.556231 3_3:-59862438 Msa0461560:five_prime_UTR
GGATCCAACATTTGTGCCCA+AGG 0.558370 3_3:-59857272 Msa0461560:CDS
GCTGCCTTTGATCGTGGTAA+GGG 0.560441 3_3:-59857571 Msa0461560:CDS
TCAGGTGGGGTTAGATGAGA+TGG 0.560508 3_3:-59857116 Msa0461560:CDS
ACACATTCTGTGATCAGGAT+AGG 0.562462 3_3:+59860500 None:intergenic
TTGATCCGGTTATGGATGCA+TGG 0.569262 3_3:-59856919 Msa0461560:CDS
AAGAGGAATTGGAAAGGGAA+AGG 0.571587 3_3:-59858163 Msa0461560:CDS
TTTGGAGATGAAAGGCATTG+TGG 0.573291 3_3:+59862317 None:intergenic
AAGGCATTGTGGAAGTGAAG+AGG 0.576553 3_3:+59862328 None:intergenic
TGAAGCGATTGTAATCGGAT+TGG 0.582038 3_3:+59862286 None:intergenic
AAAACAGAAGCGCTATGAAG+AGG 0.582251 3_3:-59858180 Msa0461560:CDS
ATTGTTCCAAGTAAAGCTCT+GGG 0.582286 3_3:+59857761 None:intergenic
AGTTGAGGAGCCTCCTTCTG+AGG 0.582751 3_3:-59858824 Msa0461560:CDS
CAATTAAATCTATGTCCGAT+GGG 0.583416 3_3:-59858214 Msa0461560:CDS
GAATGGGTGCAACAGGATCA+GGG 0.585195 3_3:-59861068 Msa0461560:CDS
CTTTGATCGTGGTAAGGGCG+AGG 0.585724 3_3:-59857566 Msa0461560:CDS
ACTAATTCCATACTTGTGAC+TGG 0.586278 3_3:-59857037 Msa0461560:CDS
CTATGAAGAGGAATTGGAAA+GGG 0.588782 3_3:-59858168 Msa0461560:CDS
ATGGTGAGCCCCGACCCGAT+CGG 0.589594 3_3:+59862423 None:intergenic
AACAACCCACCCGATCGGGT+CGG 0.592888 3_3:-59862433 Msa0461560:five_prime_UTR
TGGATTGGAGTTGATCAGGT+GGG 0.593502 3_3:-59857130 Msa0461560:CDS
GTCGATAACGATGGGAGTGG+TGG 0.594078 3_3:+59862260 None:intergenic
GTTTGAGAGAGTACCCAATA+CGG 0.594884 3_3:+59862220 None:intergenic
AAGTAGCTCCCAACCTGCTG+AGG 0.596677 3_3:-59857245 Msa0461560:CDS
GGTCTGGCAGAAAGGAGCTA+AGG 0.597955 3_3:-59858896 Msa0461560:intron
TGAAAATCTTCTTTGGTGAG+CGG 0.599646 3_3:+59857208 None:intergenic
GCGCCATTGTCGATAACGAT+GGG 0.599979 3_3:+59862252 None:intergenic
TAAGGGAGAAACAAGGTCAA+AGG 0.600031 3_3:-59858777 Msa0461560:CDS
GAATGCTGCGTCAACACCAA+AGG 0.600730 3_3:+59860111 None:intergenic
GGACTGCACAACTTTACTAC+GGG 0.602389 3_3:+59858588 None:intergenic
GGATTGGAGTTGATCAGGTG+GGG 0.603330 3_3:-59857129 Msa0461560:CDS
TGGATCATGGTCACCAACAA+TGG 0.605508 3_3:+59861844 None:intergenic
AATAGTTTGACAGGTAGTGT+TGG 0.609953 3_3:-59857649 Msa0461560:intron
TTGGTGAGCGGACGAACGCG+TGG 0.616384 3_3:+59857220 None:intergenic
CGGCCGCGACATAAAGCCAC+AGG 0.616729 3_3:-59862046 Msa0461560:intron
GAGCCCCGACCCGATCGGGT+GGG 0.618304 3_3:+59862428 None:intergenic
ACAACTGCTGCCTTTGATCG+TGG 0.621156 3_3:-59857577 Msa0461560:CDS
TGGCCGGGGTCTCAATGAGA+AGG 0.621786 3_3:-59857096 Msa0461560:CDS
CCTGGAGCCTTGAAGAGATG+CGG 0.621822 3_3:+59857440 None:intergenic
CTGGATTGGAGTTGATCAGG+TGG 0.622971 3_3:-59857131 Msa0461560:CDS
TTGACAGGTAGTGTTGGTCG+TGG 0.623337 3_3:-59857643 Msa0461560:intron
ATTGTCGATAACGATGGGAG+TGG 0.624254 3_3:+59862257 None:intergenic
AAGGAAACAACAGCTAGAAG+AGG 0.625342 3_3:-59858144 Msa0461560:CDS
ATATATATTGTCTAAAATCG+AGG 0.625946 3_3:+59856733 None:intergenic
CTGGCAGAAAGGAGCTAAGG+AGG 0.626277 3_3:-59858893 Msa0461560:intron
AATTCCATACTTGTGACTGG+TGG 0.627990 3_3:-59857034 Msa0461560:CDS
AGCGCCATTGTCGATAACGA+TGG 0.629390 3_3:+59862251 None:intergenic
CCAGGCGTTCAATGATGCCA+GGG 0.631341 3_3:+59856999 None:intergenic
GCTAACAGTCCTCACATGAG+AGG 0.631500 3_3:+59856565 None:intergenic
TCCACACACAAACATTCACT+AGG 0.632292 3_3:-59856862 Msa0461560:CDS
TAACCTTCTCATTGAGACCC+CGG 0.634694 3_3:+59857093 None:intergenic
CAAAGGCAGCAGTTGTCAGG+AGG 0.634784 3_3:+59857584 None:intergenic
GCAATCTCTTCCTCAGAAGG+AGG 0.635472 3_3:+59858814 None:intergenic
AAGAATCTAAGTAGCAGACA+TGG 0.636385 3_3:+59862404 None:intergenic
TCCTAGTGAATGTTTGTGTG+TGG 0.637957 3_3:+59856861 None:intergenic
ACTCCCATCGTTATCGACAA+TGG 0.639040 3_3:-59862255 Msa0461560:CDS
ATACCTGTGGCTTTATGTCG+CGG 0.641067 3_3:+59862043 None:intergenic
TCGCTTTCGAATGCTGATCG+TGG 0.643501 3_3:+59861785 None:intergenic
GAAGGAGGCTCCTCAACTGG+AGG 0.645561 3_3:+59858829 None:intergenic
GAGAAATGGCTGAGGCGAAG+AGG 0.646132 3_3:-59858750 Msa0461560:CDS
ATGTTTGTGTGTGGAAACCA+GGG 0.651346 3_3:+59856870 None:intergenic
AAGGTTGCGAGAAATGGCTG+AGG 0.651418 3_3:-59858758 Msa0461560:CDS
GTAAAGTTGTGCAGTCCTTG+CGG 0.652419 3_3:-59858582 Msa0461560:CDS
AAACGACTCAAAACAAATGG+AGG 0.653455 3_3:-59857694 Msa0461560:CDS
AATGGGTGCAACAGGATCAG+GGG 0.654606 3_3:-59861067 Msa0461560:intron
ATACAGGGCTAGATTTACAT+GGG 0.656838 3_3:-59859061 Msa0461560:intron
ATTTCCATTTCCATTCGTGG+AGG 0.662358 3_3:+59857669 None:intergenic
GCTATGAAGAGGAATTGGAA+AGG 0.664977 3_3:-59858169 Msa0461560:CDS
CCGGTTATGGATGCATGGCG+TGG 0.666067 3_3:-59856914 Msa0461560:CDS
CGATGACGATGAACCAGATG+AGG 0.674955 3_3:-59857479 Msa0461560:CDS
GGGGTTAGATGAGATGGCCG+GGG 0.683662 3_3:-59857110 Msa0461560:CDS
TTAAATCTATGTCCGATGGG+AGG 0.689589 3_3:-59858211 Msa0461560:CDS
GTATACGCTTATAAACATCC+CGG 0.690841 3_3:-59858503 Msa0461560:CDS
CATCCCGGATGACATGCTGA+CGG 0.695168 3_3:-59858488 Msa0461560:CDS
GCAGCAATAAGGGAGAAACA+AGG 0.705579 3_3:-59858784 Msa0461560:CDS
GAGCTGGAAAATGAATTACG+TGG 0.728785 3_3:-59858712 Msa0461560:intron
ATTCGGATGATTAGACCCTG+CGG 0.743477 3_3:-59856968 Msa0461560:CDS
TGTTTGTGTGTGGAAACCAG+GGG 0.796872 3_3:+59856871 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATAAATTTTTAAATAAAT+AGG - chr3_3:59859641-59859660 Msa0461560:intron 0.0%
!!! TTTTATCTTTTTATAGAAAT+AGG + chr3_3:59858183-59858202 None:intergenic 10.0%
!!! AATTTTGAATATTTTCATCA+TGG - chr3_3:59856886-59856905 Msa0461560:CDS 15.0%
!!! ATTTTGAATATTTTCATCAT+GGG - chr3_3:59856887-59856906 Msa0461560:CDS 15.0%
!! AATATGAATAATTTCTAACT+AGG - chr3_3:59857544-59857563 Msa0461560:CDS 15.0%
!! ATATGAATAATTTCTAACTA+GGG - chr3_3:59857545-59857564 Msa0461560:CDS 15.0%
!!! CTTTTTTTTTTTTTTTTGCT+TGG - chr3_3:59860686-59860705 Msa0461560:intron 15.0%
!!! CAATTTTCTAAGAAATTATT+TGG + chr3_3:59860739-59860758 None:intergenic 15.0%
!!! TTTTTGGTGAATTTTTAGAT+GGG - chr3_3:59856939-59856958 Msa0461560:CDS 20.0%
!! ATATATGTTAATGTCATACA+AGG + chr3_3:59857718-59857737 None:intergenic 20.0%
!! TGTACCATATTACATATTAT+GGG - chr3_3:59857842-59857861 Msa0461560:intron 20.0%
!! TATTCCCATAATATGTAATA+TGG + chr3_3:59857849-59857868 None:intergenic 20.0%
!! TATTACATATTATGGGAATA+TGG - chr3_3:59857849-59857868 Msa0461560:intron 20.0%
!! ATAAAAAAACACTTTACTCA+TGG + chr3_3:59858016-59858035 None:intergenic 20.0%
!!! TTGCTTTATTAAGGATTTTA+TGG - chr3_3:59859060-59859079 Msa0461560:intron 20.0%
!! AACATTGTTAAAAAAACTGT+AGG - chr3_3:59859570-59859589 Msa0461560:intron 20.0%
!! ACATTGTTAAAAAAACTGTA+GGG - chr3_3:59859571-59859590 Msa0461560:intron 20.0%
!! TTATTAACACTTTACACATT+TGG + chr3_3:59859732-59859751 None:intergenic 20.0%
!!! TTATATTTTCAGTTTGTTGA+CGG - chr3_3:59859786-59859805 Msa0461560:intron 20.0%
!! TAAGAAATAGTACGTATTTA+GGG + chr3_3:59859953-59859972 None:intergenic 20.0%
!! TCTTATTAAATTCTCAATAC+AGG - chr3_3:59859975-59859994 Msa0461560:intron 20.0%
!! CTTATTAAATTCTCAATACA+GGG - chr3_3:59859976-59859995 Msa0461560:intron 20.0%
!!! ATATATATTGTCTAAAATCG+AGG + chr3_3:59862322-59862341 None:intergenic 20.0%
! CATCTAAAAATTCACCAAAA+AGG + chr3_3:59856940-59856959 None:intergenic 25.0%
!!! CTTTTTGGTGAATTTTTAGA+TGG - chr3_3:59856938-59856957 Msa0461560:CDS 25.0%
! CAAACATAAGGTTAATTGTT+GGG - chr3_3:59857129-59857148 Msa0461560:CDS 25.0%
!!! TGTTTTTCAGTTTGAGATAA+TGG - chr3_3:59857293-59857312 Msa0461560:intron 25.0%
! TATACTCACATAATTGTAAC+AGG + chr3_3:59857333-59857352 None:intergenic 25.0%
! TGTTACAATTATGTGAGTAT+AGG - chr3_3:59857332-59857351 Msa0461560:intron 25.0%
! TGCATTTGTGTGAAAAAATA+TGG - chr3_3:59857427-59857446 Msa0461560:intron 25.0%
! GAAATTATTCATATTGCTTG+TGG + chr3_3:59857539-59857558 None:intergenic 25.0%
! TAATTTCTAACTAGGGAAAT+AGG - chr3_3:59857552-59857571 Msa0461560:CDS 25.0%
!!! CATTTTTGTGTGTTAGTTTT+AGG + chr3_3:59857628-59857647 None:intergenic 25.0%
! CTAAAACTAACACACAAAAA+TGG - chr3_3:59857626-59857645 Msa0461560:CDS 25.0%
! TACTTGTTCATACTACAAAA+AGG + chr3_3:59857679-59857698 None:intergenic 25.0%
! TTTGTAGTATGAACAAGTAA+TGG - chr3_3:59857680-59857699 Msa0461560:CDS 25.0%
! GTGTACCATATTACATATTA+TGG - chr3_3:59857841-59857860 Msa0461560:intron 25.0%
!! CATTAATGTACAGTGTTTTA+AGG - chr3_3:59857873-59857892 Msa0461560:intron 25.0%
! TCAGTAATATTAAACTCCAA+TGG - chr3_3:59858081-59858100 Msa0461560:intron 25.0%
! TAATATTAAACTCCAATGGT+AGG - chr3_3:59858085-59858104 Msa0461560:intron 25.0%
! ATGATATAAGCTGCAAATTA+TGG + chr3_3:59858128-59858147 None:intergenic 25.0%
! GAACTTATGAAAACAACTTA+TGG + chr3_3:59858299-59858318 None:intergenic 25.0%
! AACATGTATTTACAAAACCA+AGG + chr3_3:59858449-59858468 None:intergenic 25.0%
!! AAAGTATTAGTACCTATAGA+TGG + chr3_3:59858639-59858658 None:intergenic 25.0%
!!! AATACTTTTTAACCCTACAA+TGG - chr3_3:59858651-59858670 Msa0461560:CDS 25.0%
!! TGTTGATATCTGTTTAAGTT+AGG - chr3_3:59858864-59858883 Msa0461560:CDS 25.0%
!! GCATTGTACATGTAATTTTA+TGG - chr3_3:59858886-59858905 Msa0461560:CDS 25.0%
! TAATAAAGCAAATAGCATAC+CGG + chr3_3:59859051-59859070 None:intergenic 25.0%
!! GTATGCTATTTGCTTTATTA+AGG - chr3_3:59859051-59859070 Msa0461560:CDS 25.0%
! AAACTATCAGAGTAACTATT+AGG - chr3_3:59859345-59859364 Msa0461560:intron 25.0%
! TTCTATCATAAGCCATATTT+CGG + chr3_3:59859397-59859416 None:intergenic 25.0%
!!! TGTTGTTGTTGCTTTATTTA+AGG - chr3_3:59859477-59859496 Msa0461560:intron 25.0%
! CATTGTTAAAAAAACTGTAG+GGG - chr3_3:59859572-59859591 Msa0461560:intron 25.0%
!! ATAGGATGAATCATTTTCAA+TGG - chr3_3:59859659-59859678 Msa0461560:intron 25.0%
!!! TATATTTTCAGTTTGTTGAC+GGG - chr3_3:59859787-59859806 Msa0461560:intron 25.0%
! AAGAAATAGTACGTATTTAG+GGG + chr3_3:59859952-59859971 None:intergenic 25.0%
! GTAAGAAATAGTACGTATTT+AGG + chr3_3:59859954-59859973 None:intergenic 25.0%
!! GAATTTCTTTTGAATCAACT+TGG - chr3_3:59860367-59860386 Msa0461560:intron 25.0%
! ATTAAGACTATAAGCACAAA+TGG + chr3_3:59860714-59860733 None:intergenic 25.0%
! TCTTAGAAAATTGTTTACTG+TGG - chr3_3:59860746-59860765 Msa0461560:intron 25.0%
!!! TGCTTTAAAATGTTTCTGAT+TGG - chr3_3:59861238-59861257 Msa0461560:intron 25.0%
! AAAAAATCCTGTTGATATGT+TGG - chr3_3:59861744-59861763 Msa0461560:intron 25.0%
! AACAATCTGAAAATCTTCTT+TGG + chr3_3:59861854-59861873 None:intergenic 25.0%
!! GAAGATTTTCAGATTGTTTT+CGG - chr3_3:59861856-59861875 Msa0461560:CDS 25.0%
!!! AGTGCTCTAACTATTTTTAT+AGG + chr3_3:59862114-59862133 None:intergenic 25.0%
!!! AGGATGGATTATTATGAAAA+AGG - chr3_3:59862210-59862229 Msa0461560:intron 25.0%
! ATTATGAAAAAGGTGAAGAT+TGG - chr3_3:59862220-59862239 Msa0461560:intron 25.0%
TTCTTGTGAGAAAGTGAAAT+TGG + chr3_3:59856580-59856599 None:intergenic 30.0%
!!! CACGTTTTGAAGTGAAATTA+GGG + chr3_3:59856857-59856876 None:intergenic 30.0%
!! CTTCAAAGTTTGTTCCTTTT+TGG - chr3_3:59856923-59856942 Msa0461560:CDS 30.0%
! TTTTTCGCAACATTGTTCAA+CGG - chr3_3:59856986-59857005 Msa0461560:CDS 30.0%
GTCTATGTTTAGCAAACATA+AGG - chr3_3:59857117-59857136 Msa0461560:CDS 30.0%
GCAAACATAAGGTTAATTGT+TGG - chr3_3:59857128-59857147 Msa0461560:CDS 30.0%
! TTTTTAACATTGTGTGACAC+AGG - chr3_3:59857174-59857193 Msa0461560:CDS 30.0%
TACAATTATGTGAGTATAGG+AGG - chr3_3:59857335-59857354 Msa0461560:intron 30.0%
ATAGGTCACTACATCAAAAT+AGG + chr3_3:59857378-59857397 None:intergenic 30.0%
CATAAGTTCAAACCTATCTA+TGG + chr3_3:59857473-59857492 None:intergenic 30.0%
TGAATTGAAGTGAGACAATA+AGG - chr3_3:59857741-59857760 Msa0461560:CDS 30.0%
GAATGTAACCATATGTTCAT+AGG - chr3_3:59857796-59857815 Msa0461560:intron 30.0%
GTTATGAACCTATGAACATA+TGG + chr3_3:59857807-59857826 None:intergenic 30.0%
TAGGTTCATAACAACTAGTT+AGG - chr3_3:59857815-59857834 Msa0461560:intron 30.0%
AGGTTCATAACAACTAGTTA+GGG - chr3_3:59857816-59857835 Msa0461560:intron 30.0%
ATTATGGTGTTTATCCAAAC+AGG + chr3_3:59858112-59858131 None:intergenic 30.0%
! TTTTACTTCGAGATTGAACT+GGG + chr3_3:59858584-59858603 None:intergenic 30.0%
! ATTTTACTTCGAGATTGAAC+TGG + chr3_3:59858585-59858604 None:intergenic 30.0%
AGTTCAATCTCGAAGTAAAA+TGG - chr3_3:59858584-59858603 Msa0461560:CDS 30.0%
!!! GAACTTCTTTTTGAGACTTA+TGG - chr3_3:59858609-59858628 Msa0461560:CDS 30.0%
! TTTTCATTTACGAATAGACC+TGG + chr3_3:59858761-59858780 None:intergenic 30.0%
TCTTGTGACATAGTTATTAC+TGG - chr3_3:59858820-59858839 Msa0461560:CDS 30.0%
! TGACATAGTTATTACTGGTT+TGG - chr3_3:59858825-59858844 Msa0461560:CDS 30.0%
! ATTTTATGGTAAAGACGAGA+TGG - chr3_3:59859074-59859093 Msa0461560:intron 30.0%
! TTTTATGGTAAAGACGAGAT+GGG - chr3_3:59859075-59859094 Msa0461560:intron 30.0%
GACCTATAGATTCTGTAATA+AGG - chr3_3:59859279-59859298 Msa0461560:intron 30.0%
CTCCTTATTACAGAATCTAT+AGG + chr3_3:59859284-59859303 None:intergenic 30.0%
AGTAACTATTAGGAAAGAGT+TGG - chr3_3:59859355-59859374 Msa0461560:intron 30.0%
AGAGTTGGAAATTAATGAGT+TGG - chr3_3:59859370-59859389 Msa0461560:intron 30.0%
TGGCTTATGATAGAACATTA+TGG - chr3_3:59859402-59859421 Msa0461560:intron 30.0%
TTTAACAATGTTTGTCTGTG+AGG + chr3_3:59859562-59859581 None:intergenic 30.0%
!!! ATATTTTCAGTTTGTTGACG+GGG - chr3_3:59859788-59859807 Msa0461560:intron 30.0%
TTTCACACTCACATATGATA+AGG + chr3_3:59859900-59859919 None:intergenic 30.0%
!! GATTGTTTCTGGTAAGAAAT+AGG - chr3_3:59860077-59860096 Msa0461560:intron 30.0%
AACAGTAGAAAAACTTAGAC+GGG + chr3_3:59860112-59860131 None:intergenic 30.0%
GAACAGTAGAAAAACTTAGA+CGG + chr3_3:59860113-59860132 None:intergenic 30.0%
TTAAATGGCGTATAAGTCTT+AGG + chr3_3:59860135-59860154 None:intergenic 30.0%
AAGACTTATACGCCATTTAA+TGG - chr3_3:59860135-59860154 Msa0461560:intron 30.0%
!!! CCACATTTTGGTTTTTTCTT+CGG + chr3_3:59860185-59860204 None:intergenic 30.0%
GTCATCAAAAATAAATGAGC+TGG - chr3_3:59860324-59860343 Msa0461560:intron 30.0%
AAGCTACAAGCATATTTGAA+GGG + chr3_3:59860666-59860685 None:intergenic 30.0%
CAAAGTTGACAATGTTTGTT+GGG - chr3_3:59860773-59860792 Msa0461560:intron 30.0%
!! TTTGATAGCTTGTTGAAAAG+AGG - chr3_3:59860805-59860824 Msa0461560:intron 30.0%
TCAATTAAATCTATGTCCGA+TGG - chr3_3:59860837-59860856 Msa0461560:intron 30.0%
CAATTAAATCTATGTCCGAT+GGG - chr3_3:59860838-59860857 Msa0461560:intron 30.0%
AGCTTGAATAAATTGAAGCA+TGG + chr3_3:59860951-59860970 None:intergenic 30.0%
AAGCTTACTAAGTTCCTTAA+TGG - chr3_3:59861106-59861125 Msa0461560:intron 30.0%
AGCTTACTAAGTTCCTTAAT+GGG - chr3_3:59861107-59861126 Msa0461560:intron 30.0%
AGAAAACTGGCTAAATCTTT+AGG - chr3_3:59861134-59861153 Msa0461560:intron 30.0%
!! ATGTTTCTGATTGGTTTCTT+TGG - chr3_3:59861247-59861266 Msa0461560:intron 30.0%
TCTTTGGACATTCTTAACAT+AGG - chr3_3:59861263-59861282 Msa0461560:intron 30.0%
CTTTGGACATTCTTAACATA+GGG - chr3_3:59861264-59861283 Msa0461560:intron 30.0%
TTGGACTGAACAAAATTTCA+GGG + chr3_3:59861900-59861919 None:intergenic 30.0%
TTTGGACTGAACAAAATTTC+AGG + chr3_3:59861901-59861920 None:intergenic 30.0%
! AAATTTTGTTCAGTCCAAAC+TGG - chr3_3:59861902-59861921 Msa0461560:intron 30.0%
AATGAGAAGGTTATCATGTA+AGG - chr3_3:59861969-59861988 Msa0461560:intron 30.0%
AAGAATCTAAGTAGCAGACA+TGG + chr3_3:59856651-59856670 None:intergenic 35.0%
GCGATTTAAGAAGTTGAAGA+TGG + chr3_3:59856679-59856698 None:intergenic 35.0%
TCTTCAACTTCTTAAATCGC+AGG - chr3_3:59856679-59856698 Msa0461560:three_prime_UTR 35.0%
!!! CCACGTTTTGAAGTGAAATT+AGG + chr3_3:59856858-59856877 None:intergenic 35.0%
CCTAATTTCACTTCAAAACG+TGG - chr3_3:59856855-59856874 Msa0461560:CDS 35.0%
GATGAAGAAAAAGATACCTG+TGG + chr3_3:59857025-59857044 None:intergenic 35.0%
! TCAAAGTACTTCAACAATGC+TGG + chr3_3:59857231-59857250 None:intergenic 35.0%
!! GATGTAGTGACCTATTTTGA+TGG - chr3_3:59857383-59857402 Msa0461560:intron 35.0%
GATCAACAACTAAACAACAC+AGG + chr3_3:59857501-59857520 None:intergenic 35.0%
TGAAGTGAGACAATAAGGTT+TGG - chr3_3:59857746-59857765 Msa0461560:CDS 35.0%
TTCATAACAACTAGTTAGGG+AGG - chr3_3:59857819-59857838 Msa0461560:intron 35.0%
! GTTGTTTCATCTTCAGATTC+TGG - chr3_3:59857946-59857965 Msa0461560:intron 35.0%
!! GACTTTGCTTTTGATCGAAT+GGG - chr3_3:59857968-59857987 Msa0461560:intron 35.0%
GATGTTCTCATAAGCTATCT+TGG - chr3_3:59858234-59858253 Msa0461560:CDS 35.0%
TCAAATAAGTCCATCCAAAC+AGG - chr3_3:59858358-59858377 Msa0461560:intron 35.0%
ACTTATGGAGTTCCATCTAT+AGG - chr3_3:59858624-59858643 Msa0461560:CDS 35.0%
AAGGCTCTTGTAAAAGATCA+AGG + chr3_3:59858683-59858702 None:intergenic 35.0%
ATGTCACAAGATGTCAAACA+TGG + chr3_3:59858811-59858830 None:intergenic 35.0%
TATCACAAACACTTCGTTGT+TGG + chr3_3:59858981-59859000 None:intergenic 35.0%
! CGAAGTGTTTGTGATAAAGA+TGG - chr3_3:59858985-59859004 Msa0461560:intron 35.0%
AGCACCTATAGTTGAAAAGA+TGG - chr3_3:59859184-59859203 Msa0461560:CDS 35.0%
ACCTATAGTTGAAAAGATGG+TGG - chr3_3:59859187-59859206 Msa0461560:CDS 35.0%
CCTATAGTTGAAAAGATGGT+GGG - chr3_3:59859188-59859207 Msa0461560:CDS 35.0%
GCTTAGGATAGTTGAAAAGA+TGG - chr3_3:59859217-59859236 Msa0461560:CDS 35.0%
TAGGATAGTTGAAAAGATGG+TGG - chr3_3:59859220-59859239 Msa0461560:CDS 35.0%
AGGATAGTTGAAAAGATGGT+GGG - chr3_3:59859221-59859240 Msa0461560:CDS 35.0%
AATAAGGAGAGTAGATCAGA+TGG - chr3_3:59859295-59859314 Msa0461560:intron 35.0%
! TAATGAGTTGGACCGAAATA+TGG - chr3_3:59859382-59859401 Msa0461560:intron 35.0%
TAACACTTTACACATTTGGC+AGG + chr3_3:59859728-59859747 None:intergenic 35.0%
CGACAGCTTCCTTTATAAAT+TGG + chr3_3:59859816-59859835 None:intergenic 35.0%
AATACAGGGCTAGATTTACA+TGG - chr3_3:59859990-59860009 Msa0461560:intron 35.0%
ATACAGGGCTAGATTTACAT+GGG - chr3_3:59859991-59860010 Msa0461560:intron 35.0%
CATAACAATGTTCCATCTTC+AGG + chr3_3:59860030-59860049 None:intergenic 35.0%
ACAGTAGAAAAACTTAGACG+GGG + chr3_3:59860111-59860130 None:intergenic 35.0%
TTATACGCCATTTAATGGTC+TGG - chr3_3:59860140-59860159 Msa0461560:intron 35.0%
CCGAAGAAAAAACCAAAATG+TGG - chr3_3:59860182-59860201 Msa0461560:intron 35.0%
GGAAAATGAATTACGTGGTT+TGG - chr3_3:59860345-59860364 Msa0461560:intron 35.0%
GTATACGCTTATAAACATCC+CGG - chr3_3:59860549-59860568 Msa0461560:intron 35.0%
GAAGCTACAAGCATATTTGA+AGG + chr3_3:59860667-59860686 None:intergenic 35.0%
GCAAAGTTGACAATGTTTGT+TGG - chr3_3:59860772-59860791 Msa0461560:intron 35.0%
CTATGAAGAGGAATTGGAAA+GGG - chr3_3:59860884-59860903 Msa0461560:intron 35.0%
AATTGAAGCATGGAACATAC+AGG + chr3_3:59860941-59860960 None:intergenic 35.0%
TGGTATTCAGCTTAGTGAAA+TGG - chr3_3:59861012-59861031 Msa0461560:intron 35.0%
GGTATTCAGCTTAGTGAAAT+GGG - chr3_3:59861013-59861032 Msa0461560:intron 35.0%
GCTTACTAAGTTCCTTAATG+GGG - chr3_3:59861108-59861127 Msa0461560:intron 35.0%
CTTACTAAGTTCCTTAATGG+GGG - chr3_3:59861109-59861128 Msa0461560:intron 35.0%
ATTGTTCCAAGTAAAGCTCT+GGG + chr3_3:59861294-59861313 None:intergenic 35.0%
AATTGTTCCAAGTAAAGCTC+TGG + chr3_3:59861295-59861314 None:intergenic 35.0%
!!! TTGTTTTGAGTCGTTTACGT+TGG + chr3_3:59861354-59861373 None:intergenic 35.0%
CGTAAACGACTCAAAACAAA+TGG - chr3_3:59861355-59861374 Msa0461560:intron 35.0%
AAACGACTCAAAACAAATGG+AGG - chr3_3:59861358-59861377 Msa0461560:intron 35.0%
ACTATTTCCATTTCCATTCG+TGG + chr3_3:59861389-59861408 None:intergenic 35.0%
GGAAATGGAAATAGTTTGAC+AGG - chr3_3:59861394-59861413 Msa0461560:intron 35.0%
AATAGTTTGACAGGTAGTGT+TGG - chr3_3:59861403-59861422 Msa0461560:intron 35.0%
AAGTTGCCAATCTTCATCTT+TGG + chr3_3:59861524-59861543 None:intergenic 35.0%
! AGGTCGAGTCTTTTATAATG+TGG - chr3_3:59861637-59861656 Msa0461560:intron 35.0%
!!! AACACGGCTAATTTTAGGTT+AGG + chr3_3:59861665-59861684 None:intergenic 35.0%
CATGAGAGTTCTTTGATACA+AGG + chr3_3:59861721-59861740 None:intergenic 35.0%
! ATCCTGTTGATATGTTGGTT+TGG - chr3_3:59861749-59861768 Msa0461560:intron 35.0%
TACCAAACCAACATATCAAC+AGG + chr3_3:59861754-59861773 None:intergenic 35.0%
!! TGTTGATATGTTGGTTTGGT+AGG - chr3_3:59861753-59861772 Msa0461560:intron 35.0%
TGAAAATCTTCTTTGGTGAG+CGG + chr3_3:59861847-59861866 None:intergenic 35.0%
! AGATTGTTTTCGGAGTTGAA+AGG - chr3_3:59861866-59861885 Msa0461560:intron 35.0%
! TTTTCGGAGTTGAAAGGTTT+AGG - chr3_3:59861872-59861891 Msa0461560:intron 35.0%
ATCATGTAAGGATGAAAAGC+TGG - chr3_3:59861981-59862000 Msa0461560:intron 35.0%
ACTAATTCCATACTTGTGAC+TGG - chr3_3:59862015-59862034 Msa0461560:intron 35.0%
! AATAGTTAGAGCACTTGATC+CGG - chr3_3:59862119-59862138 Msa0461560:intron 35.0%
TGGAAAGTTAGTTAGATTGC+TGG + chr3_3:59862350-59862369 None:intergenic 35.0%
!! TTTGGAGATGAAAGGCATTG+TGG + chr3_3:59856738-59856757 None:intergenic 40.0%
!! CGTTGGATTTTGGAGATGAA+AGG + chr3_3:59856746-59856765 None:intergenic 40.0%
TGAAGCGATTGTAATCGGAT+TGG + chr3_3:59856769-59856788 None:intergenic 40.0%
GGAACTGAAGCGATTGTAAT+CGG + chr3_3:59856774-59856793 None:intergenic 40.0%
! AGAGTACCCAATACGGAAAT+AGG + chr3_3:59856828-59856847 None:intergenic 40.0%
!! GTTTGAGAGAGTACCCAATA+CGG + chr3_3:59856835-59856854 None:intergenic 40.0%
!! TGGTGAATTTTTAGATGGGC+TGG - chr3_3:59856943-59856962 Msa0461560:CDS 40.0%
ATGTTGCGAAAAACAACACG+AGG + chr3_3:59856979-59856998 None:intergenic 40.0%
GGAGAAACTGTTACCATTGT+TGG - chr3_3:59857195-59857214 Msa0461560:CDS 40.0%
ACTTCAACAATGCTGGATCA+TGG + chr3_3:59857224-59857243 None:intergenic 40.0%
TACTTTGATTGTACTCGCTC+TGG - chr3_3:59857243-59857262 Msa0461560:CDS 40.0%
TGACATGCAGCCATCAAAAT+AGG + chr3_3:59857396-59857415 None:intergenic 40.0%
CCTATCTATGGCAACAAAAC+AGG + chr3_3:59857461-59857480 None:intergenic 40.0%
!! CCTGTTTTGTTGCCATAGAT+AGG - chr3_3:59857458-59857477 Msa0461560:CDS 40.0%
! ATTGCTTGTGGCGTTCATTT+TGG + chr3_3:59857527-59857546 None:intergenic 40.0%
TTTGGCACGACACACTTTAA+AGG - chr3_3:59857764-59857783 Msa0461560:CDS 40.0%
!! GGACTTTGCTTTTGATCGAA+TGG - chr3_3:59857967-59857986 Msa0461560:intron 40.0%
TTTAGCAGCACACCAAAGTT+GGG + chr3_3:59858385-59858404 None:intergenic 40.0%
ATAGGATGATCAATCTGCTC+TGG + chr3_3:59858537-59858556 None:intergenic 40.0%
ACACATTCTGTGATCAGGAT+AGG + chr3_3:59858555-59858574 None:intergenic 40.0%
TGCATACACATTCTGTGATC+AGG + chr3_3:59858560-59858579 None:intergenic 40.0%
! TCAAGGCTTTTGCCATTGTA+GGG + chr3_3:59858666-59858685 None:intergenic 40.0%
! ATCAAGGCTTTTGCCATTGT+AGG + chr3_3:59858667-59858686 None:intergenic 40.0%
!! CGCTTCTGTTTCTACTACTA+AGG + chr3_3:59858702-59858721 None:intergenic 40.0%
TCATTTACGAATAGACCTGG+TGG + chr3_3:59858758-59858777 None:intergenic 40.0%
ATAGCATACCGGAATCACAT+GGG + chr3_3:59859040-59859059 None:intergenic 40.0%
AATAGCATACCGGAATCACA+TGG + chr3_3:59859041-59859060 None:intergenic 40.0%
! CCCACCATCTTTTCAACTAT+AGG + chr3_3:59859191-59859210 None:intergenic 40.0%
!! AGATGGTGGGAAATAAGCTT+AGG - chr3_3:59859201-59859220 Msa0461560:CDS 40.0%
!! AGATGGTGGGAAATAAGCTT+AGG - chr3_3:59859201-59859220 Msa0461560:CDS 40.0%
GGAAATAAGCTTAGGTGGTT+TGG - chr3_3:59859242-59859261 Msa0461560:CDS 40.0%
! AAACCTTTTCCCACTAAGTG+GGG + chr3_3:59859451-59859470 None:intergenic 40.0%
! CAAACCTTTTCCCACTAAGT+GGG + chr3_3:59859452-59859471 None:intergenic 40.0%
! TGTTTTGCAGAGTTGCTTGT+AGG - chr3_3:59859692-59859711 Msa0461560:intron 40.0%
GACGGGGAACCAATTTATAA+AGG - chr3_3:59859804-59859823 Msa0461560:intron 40.0%
! AGCTTGGTAATAGCAAAAGC+AGG + chr3_3:59859927-59859946 None:intergenic 40.0%
!! TACGTATTTAGGGGTTAGCT+TGG + chr3_3:59859943-59859962 None:intergenic 40.0%
GGCTAGATTTACATGGGAAA+AGG - chr3_3:59859997-59860016 Msa0461560:intron 40.0%
AAAGGTTGAAGACCTGAAGA+TGG - chr3_3:59860015-59860034 Msa0461560:intron 40.0%
GGAACATTGTTATGTTGCAC+AGG - chr3_3:59860036-59860055 Msa0461560:intron 40.0%
TTCAGAAGCTCGATTGTTTC+TGG - chr3_3:59860066-59860085 Msa0461560:intron 40.0%
CTTTCTGCCAGACCATTAAA+TGG + chr3_3:59860150-59860169 None:intergenic 40.0%
CATTTAATGGTCTGGCAGAA+AGG - chr3_3:59860148-59860167 Msa0461560:intron 40.0%
TAAGGGAGAAACAAGGTCAA+AGG - chr3_3:59860275-59860294 Msa0461560:intron 40.0%
GAGCTGGAAAATGAATTACG+TGG - chr3_3:59860340-59860359 Msa0461560:intron 40.0%
AGGACTGCACAACTTTACTA+CGG + chr3_3:59860468-59860487 None:intergenic 40.0%
! ATTTGAAGGGTGTGATGACA+GGG + chr3_3:59860653-59860672 None:intergenic 40.0%
! TATTTGAAGGGTGTGATGAC+AGG + chr3_3:59860654-59860673 None:intergenic 40.0%
TTAAATCTATGTCCGATGGG+AGG - chr3_3:59860841-59860860 Msa0461560:intron 40.0%
!! AAAACAGAAGCGCTATGAAG+AGG - chr3_3:59860872-59860891 Msa0461560:intron 40.0%
GCTATGAAGAGGAATTGGAA+AGG - chr3_3:59860883-59860902 Msa0461560:intron 40.0%
AAGAGGAATTGGAAAGGGAA+AGG - chr3_3:59860889-59860908 Msa0461560:intron 40.0%
AAGGAAACAACAGCTAGAAG+AGG - chr3_3:59860908-59860927 Msa0461560:intron 40.0%
ATATTCATGCGAGCAAGAGA+TGG - chr3_3:59860992-59861011 Msa0461560:intron 40.0%
!! CTGGCTAAATCTTTAGGACA+AGG - chr3_3:59861140-59861159 Msa0461560:intron 40.0%
ACAATTGCGTGCCAAATACA+AGG - chr3_3:59861309-59861328 Msa0461560:intron 40.0%
TGCCAAATACAAGGACCTTT+CGG - chr3_3:59861318-59861337 Msa0461560:intron 40.0%
! GTTGGTCAATTTTCTCCGAA+AGG + chr3_3:59861336-59861355 None:intergenic 40.0%
ATTTCCATTTCCATTCGTGG+AGG + chr3_3:59861386-59861405 None:intergenic 40.0%
!! TTGGTGCCAAAGATGAAGAT+TGG - chr3_3:59861515-59861534 Msa0461560:intron 40.0%
ATAAAAGACTCGACCTAACC+TGG + chr3_3:59861633-59861652 None:intergenic 40.0%
! CACACAACACGGCTAATTTT+AGG + chr3_3:59861670-59861689 None:intergenic 40.0%
ACCAACACATACACACAACA+CGG + chr3_3:59861681-59861700 None:intergenic 40.0%
! GTTGTGTGTATGTGTTGGTA+TGG - chr3_3:59861682-59861701 Msa0461560:intron 40.0%
!! TATGTTGGTTTGGTAGGACT+TGG - chr3_3:59861759-59861778 Msa0461560:CDS 40.0%
TTGTTCAGTCCAAACTGGAT+TGG - chr3_3:59861907-59861926 Msa0461560:intron 40.0%
TGATCAACTCCAATCCAGTT+TGG + chr3_3:59861919-59861938 None:intergenic 40.0%
! AAACTGGATTGGAGTTGATC+AGG - chr3_3:59861918-59861937 Msa0461560:intron 40.0%
AATTCCATACTTGTGACTGG+TGG - chr3_3:59862018-59862037 Msa0461560:intron 40.0%
! ATTTTTATAGGCGAACCGCA+GGG + chr3_3:59862102-59862121 None:intergenic 40.0%
!! TATTTTTATAGGCGAACCGC+AGG + chr3_3:59862103-59862122 None:intergenic 40.0%
ATGTTTGTGTGTGGAAACCA+GGG + chr3_3:59862185-59862204 None:intergenic 40.0%
AATGTTTGTGTGTGGAAACC+AGG + chr3_3:59862186-59862205 None:intergenic 40.0%
TCCACACACAAACATTCACT+AGG - chr3_3:59862190-59862209 Msa0461560:intron 40.0%
TCCTAGTGAATGTTTGTGTG+TGG + chr3_3:59862194-59862213 None:intergenic 40.0%
CACACAAACATTCACTAGGA+TGG - chr3_3:59862194-59862213 Msa0461560:intron 40.0%
TCCATATTGTTGCTGAAGCT+AGG - chr3_3:59862366-59862385 Msa0461560:five_prime_UTR 40.0%
TCCTAGCTTCAGCAACAATA+TGG + chr3_3:59862370-59862389 None:intergenic 40.0%
TTTCATTCTCCTCTCATGTG+AGG - chr3_3:59862478-59862497 Msa0461560:five_prime_UTR 40.0%
ACTTTAACAACCCACCCGAT+CGG - chr3_3:59856614-59856633 Msa0461560:three_prime_UTR 45.0%
!! AAGGCATTGTGGAAGTGAAG+AGG + chr3_3:59856727-59856746 None:intergenic 45.0%
!!! ATCGGATTGGCGTTGGATTT+TGG + chr3_3:59856756-59856775 None:intergenic 45.0%
!! GATTGTAATCGGATTGGCGT+TGG + chr3_3:59856763-59856782 None:intergenic 45.0%
ATTGTCGATAACGATGGGAG+TGG + chr3_3:59856798-59856817 None:intergenic 45.0%
ACTCCCATCGTTATCGACAA+TGG - chr3_3:59856797-59856816 Msa0461560:exon 45.0%
GCGCTTCCTATTTCCGTATT+GGG - chr3_3:59856819-59856838 Msa0461560:CDS 45.0%
!! ATACCTGTGGCTTTATGTCG+CGG + chr3_3:59857012-59857031 None:intergenic 45.0%
TGGATCATGGTCACCAACAA+TGG + chr3_3:59857211-59857230 None:intergenic 45.0%
TGATGGCTGCATGTCAGAAT+TGG - chr3_3:59857400-59857419 Msa0461560:intron 45.0%
TTTGCCATGCGTCATGTACT+TGG - chr3_3:59857590-59857609 Msa0461560:CDS 45.0%
TTGCCATGCGTCATGTACTT+GGG - chr3_3:59857591-59857610 Msa0461560:CDS 45.0%
AATCCCAAGTACATGACGCA+TGG + chr3_3:59857597-59857616 None:intergenic 45.0%
! CGACACACTTTAAAGGTTGC+AGG - chr3_3:59857771-59857790 Msa0461560:intron 45.0%
! CACACTTTAAAGGTTGCAGG+TGG - chr3_3:59857774-59857793 Msa0461560:intron 45.0%
TTTGATCGAATGGGTGCAAC+AGG - chr3_3:59857977-59857996 Msa0461560:intron 45.0%
ATCCAAACAGGACCTACCAT+TGG + chr3_3:59858100-59858119 None:intergenic 45.0%
TTAGCAGCACACCAAAGTTG+GGG + chr3_3:59858384-59858403 None:intergenic 45.0%
GTTTAGCAGCACACCAAAGT+TGG + chr3_3:59858386-59858405 None:intergenic 45.0%
! CTTTGGTGTGCTGCTAAACT+TGG - chr3_3:59858387-59858406 Msa0461560:intron 45.0%
!! ATCGTGTGGTGTTGTTACCT+TGG - chr3_3:59858413-59858432 Msa0461560:intron 45.0%
!! TGGTGTTGTTACCTTGGACT+TGG - chr3_3:59858419-59858438 Msa0461560:intron 45.0%
AAGATTGGGCATAAGGCAAC+AGG + chr3_3:59858733-59858752 None:intergenic 45.0%
! TAGACCTGGTGGTGAAGATT+GGG + chr3_3:59858747-59858766 None:intergenic 45.0%
! ATAGACCTGGTGGTGAAGAT+TGG + chr3_3:59858748-59858767 None:intergenic 45.0%
TGGTAAAGACGAGATGGGAT+AGG - chr3_3:59859080-59859099 Msa0461560:intron 45.0%
AGAGAGAGAGAGAGAGAGTT+GGG - chr3_3:59859159-59859178 Msa0461560:intron 45.0%
TGGTGGGAAATAAGCTTAGG+TGG - chr3_3:59859204-59859223 Msa0461560:CDS 45.0%
AGATCAGATGGAGCATAGTC+AGG - chr3_3:59859307-59859326 Msa0461560:intron 45.0%
! CCAAACCTTTTCCCACTAAG+TGG + chr3_3:59859453-59859472 None:intergenic 45.0%
CCACTTAGTGGGAAAAGGTT+TGG - chr3_3:59859450-59859469 Msa0461560:intron 45.0%
GGAAGCTGTCGCACTAATAT+TGG - chr3_3:59859825-59859844 Msa0461560:intron 45.0%
AGCTGTCGCACTAATATTGG+TGG - chr3_3:59859828-59859847 Msa0461560:intron 45.0%
CAAAATGTGGCAGCTCCATT+GGG - chr3_3:59860195-59860214 Msa0461560:intron 45.0%
TGAGGAAGAGATTGCGAGAA+AGG - chr3_3:59860246-59860265 Msa0461560:intron 45.0%
TTGCGAGAAAGGCAGCAATA+AGG - chr3_3:59860257-59860276 Msa0461560:intron 45.0%
TGCGAGAAAGGCAGCAATAA+GGG - chr3_3:59860258-59860277 Msa0461560:intron 45.0%
GCAGCAATAAGGGAGAAACA+AGG - chr3_3:59860268-59860287 Msa0461560:intron 45.0%
AGGTCAAAGGTTGCGAGAAA+TGG - chr3_3:59860288-59860307 Msa0461560:intron 45.0%
ATAGCCAGTCTCTGCTAAGA+AGG + chr3_3:59860419-59860438 None:intergenic 45.0%
GGACTGCACAACTTTACTAC+GGG + chr3_3:59860467-59860486 None:intergenic 45.0%
GTAAAGTTGTGCAGTCCTTG+CGG - chr3_3:59860470-59860489 Msa0461560:CDS 45.0%
CAGTCCTTGCGGAAACAAAA+AGG - chr3_3:59860481-59860500 Msa0461560:CDS 45.0%
!! CTCACCTTTTTGTTTCCGCA+AGG + chr3_3:59860488-59860507 None:intergenic 45.0%
! TTTTAATCGCTGCCTCCCAT+CGG + chr3_3:59860856-59860875 None:intergenic 45.0%
! GAAGCGCTATGAAGAGGAAT+TGG - chr3_3:59860878-59860897 Msa0461560:intron 45.0%
! CAGTTTTCTCTCCCCCATTA+AGG + chr3_3:59861123-59861142 None:intergenic 45.0%
CTTAATGGGGGAGAGAAAAC+TGG - chr3_3:59861121-59861140 Msa0461560:intron 45.0%
GCACGACTTCAATCTTGACA+AGG - chr3_3:59861179-59861198 Msa0461560:intron 45.0%
CTCCGAAAGGTCCTTGTATT+TGG + chr3_3:59861323-59861342 None:intergenic 45.0%
AGCTCTGTGTTATCCTCATC+TGG + chr3_3:59861589-59861608 None:intergenic 45.0%
TCTACCTTGGGCACAAATGT+TGG + chr3_3:59861787-59861806 None:intergenic 45.0%
! TGGGAGCTACTTTCTACCTT+GGG + chr3_3:59861799-59861818 None:intergenic 45.0%
! TTGGGAGCTACTTTCTACCT+TGG + chr3_3:59861800-59861819 None:intergenic 45.0%
! TGGATTGGAGTTGATCAGGT+GGG - chr3_3:59861922-59861941 Msa0461560:intron 45.0%
TAACCTTCTCATTGAGACCC+CGG + chr3_3:59861962-59861981 None:intergenic 45.0%
ATTCGGATGATTAGACCCTG+CGG - chr3_3:59862084-59862103 Msa0461560:CDS 45.0%
! TAGAGCACTTGATCCGGTTA+TGG - chr3_3:59862125-59862144 Msa0461560:intron 45.0%
TTGATCCGGTTATGGATGCA+TGG - chr3_3:59862133-59862152 Msa0461560:intron 45.0%
TGTTTGTGTGTGGAAACCAG+GGG + chr3_3:59862184-59862203 None:intergenic 45.0%
!! TAAAAAACTAAAATAAAAAA+TGG - chr3_3:59859607-59859626 Msa0461560:intron 5.0%
CTTTAACAACCCACCCGATC+GGG - chr3_3:59856615-59856634 Msa0461560:three_prime_UTR 50.0%
GCGCCATTGTCGATAACGAT+GGG + chr3_3:59856803-59856822 None:intergenic 50.0%
AGCGCCATTGTCGATAACGA+TGG + chr3_3:59856804-59856823 None:intergenic 50.0%
GGCGCTTCCTATTTCCGTAT+TGG - chr3_3:59856818-59856837 Msa0461560:CDS 50.0%
TCGCTTTCGAATGCTGATCG+TGG + chr3_3:59857270-59857289 None:intergenic 50.0%
GAATGGGTGCAACAGGATCA+GGG - chr3_3:59857984-59858003 Msa0461560:intron 50.0%
AATGGGTGCAACAGGATCAG+GGG - chr3_3:59857985-59858004 Msa0461560:intron 50.0%
CTCCAATGGTAGGTCCTGTT+TGG - chr3_3:59858095-59858114 Msa0461560:intron 50.0%
AAAGTTGGGGCCTGTTTGGA+TGG + chr3_3:59858371-59858390 None:intergenic 50.0%
ATCCAAACAGGCCCCAACTT+TGG - chr3_3:59858370-59858389 Msa0461560:intron 50.0%
! TGGTGTGCTGCTAAACTTGG+TGG - chr3_3:59858390-59858409 Msa0461560:intron 50.0%
! GCTAAACTTGGTGGATCGTG+TGG - chr3_3:59858399-59858418 Msa0461560:intron 50.0%
ACCTTGGACTTGGAGTTCCT+TGG - chr3_3:59858429-59858448 Msa0461560:intron 50.0%
ACCAAGGAACTCCAAGTCCA+AGG + chr3_3:59858433-59858452 None:intergenic 50.0%
GGTGGTGAAGATTGGGCATA+AGG + chr3_3:59858740-59858759 None:intergenic 50.0%
TATGCCCAATCTTCACCACC+AGG - chr3_3:59858740-59858759 Msa0461560:CDS 50.0%
! TTTTCTGCCATGCCAGCCTT+TGG - chr3_3:59858925-59858944 Msa0461560:intron 50.0%
GAATGCTGCGTCAACACCAA+AGG + chr3_3:59858944-59858963 None:intergenic 50.0%
! GATGGTCTTGCTATGTGTCC+TGG - chr3_3:59859003-59859022 Msa0461560:CDS 50.0%
! ACATGGGTTGTAGCGAATCC+AGG + chr3_3:59859024-59859043 None:intergenic 50.0%
CGCTACAACCCATGTGATTC+CGG - chr3_3:59859029-59859048 Msa0461560:CDS 50.0%
GAGAGAGAGAGAGAGAGAGT+TGG - chr3_3:59859158-59859177 Msa0461560:intron 50.0%
! CTTTTCCCACTAAGTGGGGT+CGG + chr3_3:59859447-59859466 None:intergenic 50.0%
! CCAATGGAGCTGCCACATTT+TGG + chr3_3:59860197-59860216 None:intergenic 50.0%
CCAAAATGTGGCAGCTCCAT+TGG - chr3_3:59860194-59860213 Msa0461560:intron 50.0%
GCAATCTCTTCCTCAGAAGG+AGG + chr3_3:59860241-59860260 None:intergenic 50.0%
CTCGCAATCTCTTCCTCAGA+AGG + chr3_3:59860244-59860263 None:intergenic 50.0%
AAGGTTGCGAGAAATGGCTG+AGG - chr3_3:59860294-59860313 Msa0461560:intron 50.0%
CGATCCTTCTTAGCAGAGAC+TGG - chr3_3:59860412-59860431 Msa0461560:intron 50.0%
! CAGAGACTGGCTATGTCTCT+AGG - chr3_3:59860425-59860444 Msa0461560:intron 50.0%
TTCTCATTAGACGCAGCGTC+AGG + chr3_3:59860529-59860548 None:intergenic 50.0%
GGAGAACCCAGAGCTTTACT+TGG - chr3_3:59861285-59861304 Msa0461560:intron 50.0%
!! TTGACAGGTAGTGTTGGTCG+TGG - chr3_3:59861409-59861428 Msa0461560:intron 50.0%
! AGAGACTCAGTGCTGCTCAA+AGG - chr3_3:59861434-59861453 Msa0461560:intron 50.0%
! GAGACTCAGTGCTGCTCAAA+GGG - chr3_3:59861435-59861454 Msa0461560:intron 50.0%
GATCAAAGGCAGCAGTTGTC+AGG + chr3_3:59861474-59861493 None:intergenic 50.0%
ACAACTGCTGCCTTTGATCG+TGG - chr3_3:59861475-59861494 Msa0461560:intron 50.0%
TGCTGCCTTTGATCGTGGTA+AGG - chr3_3:59861480-59861499 Msa0461560:intron 50.0%
GCTGCCTTTGATCGTGGTAA+GGG - chr3_3:59861481-59861500 Msa0461560:intron 50.0%
GGTAAGGGCGAGGATACATT+TGG - chr3_3:59861496-59861515 Msa0461560:intron 50.0%
CGATGACGATGAACCAGATG+AGG - chr3_3:59861573-59861592 Msa0461560:intron 50.0%
TCTCTTCAAGGCTCCAGGTT+AGG - chr3_3:59861617-59861636 Msa0461560:intron 50.0%
GCCGTGTTGTGTGTATGTGT+TGG - chr3_3:59861677-59861696 Msa0461560:intron 50.0%
GGATCCAACATTTGTGCCCA+AGG - chr3_3:59861780-59861799 Msa0461560:CDS 50.0%
! CTGGATTGGAGTTGATCAGG+TGG - chr3_3:59861921-59861940 Msa0461560:intron 50.0%
! GGATTGGAGTTGATCAGGTG+GGG - chr3_3:59861923-59861942 Msa0461560:intron 50.0%
TCAGGTGGGGTTAGATGAGA+TGG - chr3_3:59861936-59861955 Msa0461560:intron 50.0%
GCTTCCACCAGTCACAAGTA+TGG + chr3_3:59862025-59862044 None:intergenic 50.0%
ATCATTGAACGCCTGGAAGC+TGG - chr3_3:59862060-59862079 Msa0461560:CDS 50.0%
AACGCCTGGAAGCTGGAATT+CGG - chr3_3:59862067-59862086 Msa0461560:CDS 50.0%
TCATCCGAATTCCAGCTTCC+AGG + chr3_3:59862074-59862093 None:intergenic 50.0%
GTCGATAACGATGGGAGTGG+TGG + chr3_3:59856795-59856814 None:intergenic 55.0%
CGAATGGGTGCAACAGGATC+AGG - chr3_3:59857983-59858002 Msa0461560:intron 55.0%
GTGCAACAGGATCAGGGGTA+TGG - chr3_3:59857990-59858009 Msa0461560:intron 55.0%
CACCAAAGTTGGGGCCTGTT+TGG + chr3_3:59858375-59858394 None:intergenic 55.0%
GTCAACACCAAAGGCTGGCA+TGG + chr3_3:59858935-59858954 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr3_3:59859439-59859458 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr3_3:59859438-59859457 Msa0461560:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr3_3:59859439-59859458 Msa0461560:intron 55.0%
CGACCCCACTTAGTGGGAAA+AGG - chr3_3:59859445-59859464 Msa0461560:intron 55.0%
GGTCTGGCAGAAAGGAGCTA+AGG - chr3_3:59860156-59860175 Msa0461560:intron 55.0%
CTGGCAGAAAGGAGCTAAGG+AGG - chr3_3:59860159-59860178 Msa0461560:intron 55.0%
TCAGAAGGAGGCTCCTCAAC+TGG + chr3_3:59860229-59860248 None:intergenic 55.0%
AGTTGAGGAGCCTCCTTCTG+AGG - chr3_3:59860228-59860247 Msa0461560:intron 55.0%
GAGAAATGGCTGAGGCGAAG+AGG - chr3_3:59860302-59860321 Msa0461560:intron 55.0%
! GACTGGCTATGTCTCTAGGC+AGG - chr3_3:59860429-59860448 Msa0461560:CDS 55.0%
CATCCCGGATGACATGCTGA+CGG - chr3_3:59860564-59860583 Msa0461560:intron 55.0%
TCTGCCGTCAGCATGTCATC+CGG + chr3_3:59860571-59860590 None:intergenic 55.0%
AATGGAGGCTCCTCCACGAA+TGG - chr3_3:59861373-59861392 Msa0461560:intron 55.0%
GGCTCCTCCACGAATGGAAA+TGG - chr3_3:59861379-59861398 Msa0461560:intron 55.0%
CAAAGGCAGCAGTTGTCAGG+AGG + chr3_3:59861471-59861490 None:intergenic 55.0%
CTCGCCCTTACCACGATCAA+AGG + chr3_3:59861488-59861507 None:intergenic 55.0%
CTTTGATCGTGGTAAGGGCG+AGG - chr3_3:59861486-59861505 Msa0461560:intron 55.0%
AGCTTGCCCGCATCTCTTCA+AGG - chr3_3:59861605-59861624 Msa0461560:intron 55.0%
CTGGAGCCTTGAAGAGATGC+GGG + chr3_3:59861614-59861633 None:intergenic 55.0%
CCTGGAGCCTTGAAGAGATG+CGG + chr3_3:59861615-59861634 None:intergenic 55.0%
AAGTAGCTCCCAACCTGCTG+AGG - chr3_3:59861807-59861826 Msa0461560:CDS 55.0%
GTGGGGTTAGATGAGATGGC+CGG - chr3_3:59861940-59861959 Msa0461560:intron 55.0%
TGGGGTTAGATGAGATGGCC+GGG - chr3_3:59861941-59861960 Msa0461560:intron 55.0%
! GGTGGAAGCTCTCTTTTCCC+TGG - chr3_3:59862036-59862055 Msa0461560:intron 55.0%
CCAGGCGTTCAATGATGCCA+GGG + chr3_3:59862056-59862075 None:intergenic 55.0%
TCCAGGCGTTCAATGATGCC+AGG + chr3_3:59862057-59862076 None:intergenic 55.0%
CCACGCCATGCATCCATAAC+CGG + chr3_3:59862141-59862160 None:intergenic 55.0%
TCTGCTTATGCATCAGCCCC+TGG - chr3_3:59862165-59862184 Msa0461560:intron 55.0%
AACAACCCACCCGATCGGGT+CGG - chr3_3:59856619-59856638 Msa0461560:three_prime_UTR 60.0%
GCTGCGTCAACACCAAAGGC+TGG + chr3_3:59858940-59858959 None:intergenic 60.0%
CAACTGGAGGTGGCACCCAA+TGG + chr3_3:59860213-59860232 None:intergenic 60.0%
! TTGGGTGCCACCTCCAGTTG+AGG - chr3_3:59860213-59860232 Msa0461560:intron 60.0%
GAAGGAGGCTCCTCAACTGG+AGG + chr3_3:59860226-59860245 None:intergenic 60.0%
CTGCCGTCAGCATGTCATCC+GGG + chr3_3:59860570-59860589 None:intergenic 60.0%
TGACATGCTGACGGCAGAGC+AGG - chr3_3:59860573-59860592 Msa0461560:intron 60.0%
CCGCATCTCTTCAAGGCTCC+AGG - chr3_3:59861612-59861631 Msa0461560:intron 60.0%
GGGGTTAGATGAGATGGCCG+GGG - chr3_3:59861942-59861961 Msa0461560:intron 60.0%
TGGCCGGGGTCTCAATGAGA+AGG - chr3_3:59861956-59861975 Msa0461560:intron 60.0%
CCCTGGCATCATTGAACGCC+TGG - chr3_3:59862053-59862072 Msa0461560:CDS 60.0%
CCGGTTATGGATGCATGGCG+TGG - chr3_3:59862138-59862157 Msa0461560:intron 60.0%
ACAACCCACCCGATCGGGTC+GGG - chr3_3:59856620-59856639 Msa0461560:three_prime_UTR 65.0%
ATGGTGAGCCCCGACCCGAT+CGG + chr3_3:59856632-59856651 None:intergenic 65.0%
CGGCCGCGACATAAAGCCAC+AGG - chr3_3:59857006-59857025 Msa0461560:CDS 65.0%
GGAGGCTCCTCAACTGGAGG+TGG + chr3_3:59860223-59860242 None:intergenic 65.0%
TTGGTGAGCGGACGAACGCG+TGG + chr3_3:59861835-59861854 None:intergenic 65.0%
CAACCCACCCGATCGGGTCG+GGG - chr3_3:59856621-59856640 Msa0461560:three_prime_UTR 70.0%
TGGTGAGCCCCGACCCGATC+GGG + chr3_3:59856631-59856650 None:intergenic 70.0%
GCGTGGCGCCTCAGCAGGTT+GGG + chr3_3:59861818-59861837 None:intergenic 70.0%
GAGCCCCGACCCGATCGGGT+GGG + chr3_3:59856627-59856646 None:intergenic 75.0%
TGAGCCCCGACCCGATCGGG+TGG + chr3_3:59856628-59856647 None:intergenic 75.0%
CGCGTGGCGCCTCAGCAGGT+TGG + chr3_3:59861819-59861838 None:intergenic 75.0%
CGAACGCGTGGCGCCTCAGC+AGG + chr3_3:59861823-59861842 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 59856566 59862508 59856566 ID=Msa0461560;Name=Msa0461560
chr3_3 mRNA 59856566 59862508 59856566 ID=Msa0461560-mRNA-1;Parent=Msa0461560;Name=Msa0461560-mRNA-1;_AED=0.11;_eAED=0.11;_QI=174|0.76|0.64|1|0.92|0.85|14|233|684
chr3_3 exon 59856566 59857299 59856566 ID=Msa0461560-mRNA-1:exon:12458;Parent=Msa0461560-mRNA-1
chr3_3 exon 59857441 59857658 59857441 ID=Msa0461560-mRNA-1:exon:12457;Parent=Msa0461560-mRNA-1
chr3_3 exon 59857668 59857789 59857668 ID=Msa0461560-mRNA-1:exon:12456;Parent=Msa0461560-mRNA-1
chr3_3 exon 59858134 59858261 59858134 ID=Msa0461560-mRNA-1:exon:12455;Parent=Msa0461560-mRNA-1
chr3_3 exon 59858480 59858673 59858480 ID=Msa0461560-mRNA-1:exon:12454;Parent=Msa0461560-mRNA-1
chr3_3 exon 59858713 59858908 59858713 ID=Msa0461560-mRNA-1:exon:12453;Parent=Msa0461560-mRNA-1
chr3_3 exon 59858987 59859077 59858987 ID=Msa0461560-mRNA-1:exon:12452;Parent=Msa0461560-mRNA-1
chr3_3 exon 59859167 59859276 59859167 ID=Msa0461560-mRNA-1:exon:12451;Parent=Msa0461560-mRNA-1
chr3_3 exon 59860084 59860133 59860084 ID=Msa0461560-mRNA-1:exon:12450;Parent=Msa0461560-mRNA-1
chr3_3 exon 59860429 59860531 59860429 ID=Msa0461560-mRNA-1:exon:12449;Parent=Msa0461560-mRNA-1
chr3_3 exon 59861068 59861112 59861068 ID=Msa0461560-mRNA-1:exon:12448;Parent=Msa0461560-mRNA-1
chr3_3 exon 59861754 59861878 59861754 ID=Msa0461560-mRNA-1:exon:12447;Parent=Msa0461560-mRNA-1
chr3_3 exon 59862047 59862117 59862047 ID=Msa0461560-mRNA-1:exon:12446;Parent=Msa0461560-mRNA-1
chr3_3 exon 59862234 59862508 59862234 ID=Msa0461560-mRNA-1:exon:12445;Parent=Msa0461560-mRNA-1
chr3_3 five_prime_UTR 59862335 59862508 59862335 ID=Msa0461560-mRNA-1:five_prime_utr;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59862234 59862334 59862234 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59862047 59862117 59862047 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59861754 59861878 59861754 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59861068 59861112 59861068 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59860429 59860531 59860429 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59860084 59860133 59860084 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59859167 59859276 59859167 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59858987 59859077 59858987 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59858713 59858908 59858713 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59858480 59858673 59858480 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59858134 59858261 59858134 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59857668 59857789 59857668 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59857441 59857658 59857441 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 CDS 59856799 59857299 59856799 ID=Msa0461560-mRNA-1:cds;Parent=Msa0461560-mRNA-1
chr3_3 three_prime_UTR 59856566 59856798 59856566 ID=Msa0461560-mRNA-1:three_prime_utr;Parent=Msa0461560-mRNA-1
Gene Sequence

>Msa0461560

ATGCCTTTCATCTCCAAAATCCAACGCCAATCCGATTACAATCGCTTCAGTTCCACCACTCCCATCGTTATCGACAATGGCGCTTCCTATTTCCGTATTGGATGGGCTGGTGAGTCTGAACCTCGTGTTGTTTTTCGCAACATTGTTCAACGGCCGCGACATAAAGCCACAGGAGAAACTGTTACCATTGTTGGTGACCATGATCCAGCATTGTTGAAGTACTTTGATTGTACTCGCTCTGGACCACGATCAGCATTCGAAAGCGATGTTGTTTTTCAGTTTGAGATAATGGAATATATTCTGGACTTTGCTTTTGATCGAATGGGTGCAACAGGATCAGGGATTGATCATCCTATCCTGATCACAGAATGTGTATGCAACCCAGTTCAATCTCGAAGTAAAATGGCAGAACTTCTTTTTGAGACTTATGGAGTTCCATCTATAGCCTTTGGTGTTGACGCAGCATTCAGCTATAAATATAACCAACAACGAAGTTTTGTTGACGGGGAACCAATTTATAAAGGAAGCTGTCGCACTAATATTGGTGGATTTCATGTGACTGATTATTTTCAGCGACTTCTTTCACTTAAATATCCTTATCATATGGCTAGATTTACATGGGAAAAGGTTGAAGACCTGAAGATGGAACATTGTTATGTTGCACAGGACTATGTTTCAGAAGCTCGATTGTTTCTGAAAGGAGCTAAGGAGGCCGAAGAAAAAACCAAAATGTGGCAGCTCCATTGGGTGCCACCTCCAGTTGAGGAGCCTCCTTCTGAGGAAGAGATTGCGAGAAAGGCAGCAATAAGGGAGAAACAAGGTCAAAGGTTGCGAGAAATGGCTGAGGCGAAGAGGTCATCAAAAATAAATGAGCTGGAAAATGAATTACGTGAGAGTGATGTACGATCCTTCTTAGCAGAGACTGGCTATGTCTCTAGGCAGGAAGTAGAATCTGCCCGTAGTAAAGTTGTGCAGTCCTTGCGGAAACAAAAAGGTGAGCAAACTGAAATTGAAAAACCTGACGCTGCGTCTAATGAGAAGTATACGCTTATAAACATCCCGGATGACATGCTGACGGCAGAGCAGCTTGTTGAAAAGAGGAAACAGCTGTCAATTAAATCTATGTCCGATGGGAGGCAGCGATTAAAACAGAAGCGCTATGAAGAGGAATTGGAAAGGGAAAGGAAACAACAGCTAGAAGAGGAGAGACGCCTGGAGAACCCAGAGCTTTACTTGGAACAATTGCGTGCCAAATACAAGGACCTTTCGGAGAAAATTGACCAACGTAAACGACTCAAAACAAATGGAGGCTCCTCCACGAATGGAAATGGAAATAGTAGTGTTGGTCGTGGTGAGAGACTCAGTGCTGCTCAAAGGGAGAGAATGCGCCTCCTGACAACTGCTGCCTTTGATCGTGGTAAGGGCGAGGATACATTTGGTGCCAAAGATGAAGATTGGCAACTTTACAAATTGATGAGCAAAGATAATGATGACGATGACGATGAACCAGATGAGGATAACACAGAGCTTGCCCGCATCTCTTCAAGGCTCCAGGACTTGGATCCAACATTTGTGCCCAAGGTAGAAAGTAGCTCCCAACCTGCTGAGGCGCCACGCGTTCGTCCGCTCACCAAAGAAGATTTTCAGATTGTTTTCGGAGTTGAAAGGTTTAGGTGCCCTGAAATTTTGTTCAGTCCAAACTGGATTGGAGTTGATCAGGTGGGGTTAGATGAGATGGCCGGGGTCTCAATGAGAAGGTTATCATGTAAGGATGAAAAGCTGGAACAGAGAATGACTAATTCCATACTTGTGACTGGTGGAAGCTCTCTTTTCCCTGGCATCATTGAACGCCTGGAAGCTGGAATTCGGATGATTAGACCCTGCGGTTCGCCTATAAAAATAGTTAGAGCACTTGATCCGGTTATGGATGCATGGCGTGGTGCGTCTGCTTATGCATCAGCCCCTGGTTTCCACACACAAACATTCACTAGGATGGATTATTATGAAAAAGGTGAAGATTGGCTTCGTAATTATCAACTGAAATATTCATTGTAA
Protein sequence

>Msa0461560

MPFISKIQRQSDYNRFSSTTPIVIDNGASYFRIGWAGESEPRVVFRNIVQRPRHKATGETVTIVGDHDPALLKYFDCTRSGPRSAFESDVVFQFEIMEYILDFAFDRMGATGSGIDHPILITECVCNPVQSRSKMAELLFETYGVPSIAFGVDAAFSYKYNQQRSFVDGEPIYKGSCRTNIGGFHVTDYFQRLLSLKYPYHMARFTWEKVEDLKMEHCYVAQDYVSEARLFLKGAKEAEEKTKMWQLHWVPPPVEEPPSEEEIARKAAIREKQGQRLREMAEAKRSSKINELENELRESDVRSFLAETGYVSRQEVESARSKVVQSLRKQKGEQTEIEKPDAASNEKYTLINIPDDMLTAEQLVEKRKQLSIKSMSDGRQRLKQKRYEEELERERKQQLEEERRLENPELYLEQLRAKYKDLSEKIDQRKRLKTNGGSSTNGNGNSSVGRGERLSAAQRERMRLLTTAAFDRGKGEDTFGAKDEDWQLYKLMSKDNDDDDDEPDEDNTELARISSRLQDLDPTFVPKVESSSQPAEAPRVRPLTKEDFQIVFGVERFRCPEILFSPNWIGVDQVGLDEMAGVSMRRLSCKDEKLEQRMTNSILVTGGSSLFPGIIERLEAGIRMIRPCGSPIKIVRALDPVMDAWRGASAYASAPGFHTQTFTRMDYYEKGEDWLRNYQLKYSL*