Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368910 | XP_003600816.2 | 99.093 | 441 | 3 | 1 | 1 | 440 | 1 | 441 | 0.0 | 905 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368910 | G7JAK3 | 99.093 | 441 | 3 | 1 | 1 | 440 | 1 | 441 | 0.0 | 905 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0368910 | Msa0416200 | 0.991244 | 1.247089e-186 | -8.615850e-47 |
| Msa0368910 | Msa0427150 | 0.807284 | 5.448641e-50 | -8.615850e-47 |
| Msa0368910 | Msa0462830 | 0.956714 | 1.536869e-114 | -8.615850e-47 |
| Msa0368910 | Msa0508420 | 0.855728 | 5.191651e-62 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368910 | MtrunA17_Chr3g0112781 | 99.093 | 441 | 3 | 1 | 1 | 440 | 1 | 441 | 0.0 | 905 |
| Msa0368910 | MtrunA17_Chr5g0436191 | 71.136 | 440 | 109 | 6 | 1 | 440 | 1 | 422 | 0.0 | 610 |
| Msa0368910 | MtrunA17_Chr1g0154851 | 52.020 | 396 | 165 | 8 | 1 | 393 | 1 | 374 | 8.02e-143 | 412 |
| Msa0368910 | MtrunA17_Chr3g0141481 | 51.139 | 395 | 172 | 8 | 1 | 393 | 8 | 383 | 8.23e-135 | 392 |
| Msa0368910 | MtrunA17_Chr5g0403841 | 49.351 | 385 | 175 | 8 | 1 | 384 | 10 | 375 | 1.32e-131 | 384 |
| Msa0368910 | MtrunA17_Chr1g0207581 | 43.678 | 435 | 209 | 7 | 5 | 432 | 54 | 459 | 3.11e-123 | 366 |
| Msa0368910 | MtrunA17_Chr1g0152841 | 46.114 | 386 | 173 | 4 | 22 | 385 | 49 | 421 | 3.14e-123 | 366 |
| Msa0368910 | MtrunA17_Chr3g0134521 | 49.196 | 311 | 146 | 2 | 75 | 385 | 93 | 391 | 3.07e-114 | 341 |
| Msa0368910 | MtrunA17_Chr2g0309941 | 43.236 | 377 | 195 | 6 | 14 | 384 | 17 | 380 | 4.12e-107 | 322 |
| Msa0368910 | MtrunA17_Chr1g0176101 | 42.249 | 329 | 160 | 4 | 63 | 387 | 48 | 350 | 1.17e-88 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0368910 | AT5G05840.1 | 66.359 | 434 | 129 | 8 | 1 | 425 | 1 | 426 | 0.0 | 572 |
| Msa0368910 | AT3G55720.1 | 54.817 | 436 | 180 | 9 | 1 | 425 | 1 | 430 | 2.01e-159 | 457 |
| Msa0368910 | AT5G66740.1 | 51.795 | 390 | 166 | 7 | 1 | 388 | 1 | 370 | 2.50e-140 | 406 |
| Msa0368910 | AT1G75160.1 | 50.864 | 405 | 170 | 7 | 1 | 388 | 3 | 395 | 1.30e-133 | 390 |
| Msa0368910 | AT1G49840.1 | 47.105 | 380 | 187 | 3 | 6 | 385 | 78 | 443 | 1.38e-123 | 368 |
| Msa0368910 | AT3G19540.1 | 50.729 | 343 | 154 | 3 | 43 | 385 | 108 | 435 | 7.61e-122 | 363 |
| Msa0368910 | AT1G27690.1 | 44.675 | 385 | 193 | 7 | 6 | 385 | 41 | 410 | 9.95e-111 | 333 |
| Msa0368910 | AT1G79420.1 | 39.276 | 387 | 214 | 6 | 13 | 384 | 19 | 399 | 2.93e-98 | 301 |
| Msa0368910 | AT5G06610.1 | 38.992 | 377 | 200 | 8 | 14 | 387 | 4 | 353 | 2.14e-84 | 263 |
Find 108 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTAGAGTTGGTGGTTTC+TGG | 0.183311 | 3_1:-65880573 | Msa0368910:CDS |
| CACATTCTGCCATGCTTTCA+TGG | 0.201655 | 3_1:+65881461 | None:intergenic |
| GAGAAGGATAAGAACTTAGA+AGG | 0.270837 | 3_1:+65881632 | None:intergenic |
| ACCTCTTAGACGTTTCTTAC+AGG | 0.271687 | 3_1:-65880463 | Msa0368910:intron |
| ATGATAGGTGAAGGAATTAA+TGG | 0.298124 | 3_1:+65881330 | None:intergenic |
| CAGAAACCGACTGTGTATAC+TGG | 0.308362 | 3_1:-65879324 | Msa0368910:CDS |
| AAACAAAGGTGTCCTTGTTT+AGG | 0.332152 | 3_1:-65879231 | Msa0368910:CDS |
| CCATCTTCTCTATCAAGATT+AGG | 0.337748 | 3_1:+65881543 | None:intergenic |
| GAGGGTCCCACCTATAGTTT+TGG | 0.340591 | 3_1:-65881736 | Msa0368910:five_prime_UTR |
| TGCAATGGGACAAGTGAAAA+TGG | 0.354180 | 3_1:-65880730 | Msa0368910:CDS |
| TGTATACTGGGAAACCAATA+TGG | 0.358913 | 3_1:-65879311 | Msa0368910:CDS |
| CATCTTCTCTATCAAGATTA+GGG | 0.370073 | 3_1:+65881544 | None:intergenic |
| CATGGCAGAATGTGAAGTTT+TGG | 0.371388 | 3_1:-65881452 | Msa0368910:CDS |
| TGTGGAGATGAAAGGGGAAA+TGG | 0.380199 | 3_1:-65880634 | Msa0368910:CDS |
| GCTTCCATGACAGCAGTGTT+TGG | 0.390938 | 3_1:-65881399 | Msa0368910:CDS |
| GTGGAGATGAAAGGGGAAAT+GGG | 0.395257 | 3_1:-65880633 | Msa0368910:CDS |
| TCAGCACCTCAGTATGCATT+GGG | 0.397772 | 3_1:-65879528 | Msa0368910:CDS |
| ATATATATACAAAATCAAAA+AGG | 0.402270 | 3_1:+65878911 | None:intergenic |
| AATACGTTGGTCTTTAATGC+TGG | 0.407727 | 3_1:+65881275 | None:intergenic |
| GATTATGCAGGAAGTTTCAA+TGG | 0.418797 | 3_1:-65880826 | Msa0368910:intron |
| TTGTATTAGTGACTCCATAT+TGG | 0.426427 | 3_1:+65879297 | None:intergenic |
| AAGGTGTCCTTGTTTAGGTT+TGG | 0.429955 | 3_1:-65879226 | Msa0368910:CDS |
| GTTATGGTGTTTAGAGTTGG+TGG | 0.430545 | 3_1:-65880580 | Msa0368910:CDS |
| GAAGCGGAACGAATCTTATA+CGG | 0.436940 | 3_1:+65879022 | None:intergenic |
| AAGAGAGAACAAGAAGAAAC+AGG | 0.447548 | 3_1:-65879088 | Msa0368910:CDS |
| TAAAGTAGCAGCTGTGAACT+TGG | 0.453174 | 3_1:-65878981 | Msa0368910:CDS |
| CGTGTCCTCGAACGCGTCTC+AGG | 0.453618 | 3_1:+65879196 | None:intergenic |
| AGAAGGATAAGAACTTAGAA+GGG | 0.455406 | 3_1:+65881633 | None:intergenic |
| TTCAGCACCTCAGTATGCAT+TGG | 0.461198 | 3_1:-65879529 | Msa0368910:CDS |
| TCCTCCAAACACTGCTGTCA+TGG | 0.465204 | 3_1:+65881395 | None:intergenic |
| TGGTTAAGTGTTTGTAGTTG+AGG | 0.466898 | 3_1:-65878870 | Msa0368910:three_prime_UTR |
| TGAAGAATGTGGAGATGAAA+GGG | 0.471607 | 3_1:-65880641 | Msa0368910:CDS |
| CCTAATCTTGATAGAGAAGA+TGG | 0.475513 | 3_1:-65881543 | Msa0368910:CDS |
| AAGAAACGTCTAAGAGGTCT+AGG | 0.477131 | 3_1:+65880468 | None:intergenic |
| ATATTGATAACCAAAACTAT+AGG | 0.486993 | 3_1:+65881726 | None:intergenic |
| TGCTATTTGAATGCCGTCGA+CGG | 0.491159 | 3_1:+65879264 | None:intergenic |
| AATAAATTAGCTGTTGACCT+TGG | 0.495236 | 3_1:+65879550 | None:intergenic |
| AAGATTAGTGCAGGAAGTGA+TGG | 0.496426 | 3_1:-65880546 | Msa0368910:CDS |
| TCCTTGTTTAGGTTTGGTGA+AGG | 0.498708 | 3_1:-65879220 | Msa0368910:CDS |
| GGACACGAATGGAAGAGGTT+TGG | 0.499414 | 3_1:-65879180 | Msa0368910:CDS |
| GCACTAATAGACCTGTTCTC+TGG | 0.500599 | 3_1:+65879383 | None:intergenic |
| GTGGATAGTATGTATGCAAT+GGG | 0.505137 | 3_1:-65880744 | Msa0368910:CDS |
| ATACGTTGGTCTTTAATGCT+GGG | 0.506311 | 3_1:+65881276 | None:intergenic |
| GAAACAGGACAGTGCGGTGG+TGG | 0.508423 | 3_1:-65879073 | Msa0368910:CDS |
| TTCGAGGACACGAATGGAAG+AGG | 0.510195 | 3_1:-65879185 | Msa0368910:CDS |
| TATGTCGTGTATGCACGCTT+TGG | 0.512725 | 3_1:+65881784 | None:intergenic |
| GTGAAGAATGTGGAGATGAA+AGG | 0.515780 | 3_1:-65880642 | Msa0368910:CDS |
| GGATACTTCAGCCAGAGAAC+AGG | 0.517748 | 3_1:-65879394 | Msa0368910:CDS |
| AATAAGAAAGTTATAAGAGA+AGG | 0.517812 | 3_1:+65881616 | None:intergenic |
| ACCTGTAAGAAACGTCTAAG+AGG | 0.521381 | 3_1:+65880462 | None:intergenic |
| AGAGTTATGGTGTTTAGAGT+TGG | 0.521665 | 3_1:-65880583 | Msa0368910:CDS |
| TCTGGTAACAAGATTAGTGC+AGG | 0.522139 | 3_1:-65880555 | Msa0368910:CDS |
| TTGTCAGAAGAATTGATGAT+AGG | 0.524340 | 3_1:+65881315 | None:intergenic |
| TTGCTTGGAGACAAACTCCT+TGG | 0.526233 | 3_1:-65880518 | Msa0368910:CDS |
| TTGATAACCAAAACTATAGG+TGG | 0.533720 | 3_1:+65881729 | None:intergenic |
| AAGGACCTGAGACGCGTTCG+AGG | 0.536027 | 3_1:-65879201 | Msa0368910:CDS |
| GGCAGAAGAGACCAGAGTTA+TGG | 0.539644 | 3_1:-65880596 | Msa0368910:CDS |
| TGTAACAGGGTCTTGATCCA+AGG | 0.542455 | 3_1:-65879567 | Msa0368910:intron |
| GAAGTGATGGAAAAGTTGCT+TGG | 0.551623 | 3_1:-65880533 | Msa0368910:CDS |
| AACTCTAAACACCATAACTC+TGG | 0.556386 | 3_1:+65880585 | None:intergenic |
| AGTGGATAGTATGTATGCAA+TGG | 0.556770 | 3_1:-65880745 | Msa0368910:CDS |
| GCATTCAAATAGCACATGCC+GGG | 0.559763 | 3_1:-65879255 | Msa0368910:CDS |
| TCCATGACAGCAGTGTTTGG+AGG | 0.559909 | 3_1:-65881396 | Msa0368910:CDS |
| GGCATTCAAATAGCACATGC+CGG | 0.560172 | 3_1:-65879256 | Msa0368910:CDS |
| TGTTCTCTCTTCAAATCACT+AGG | 0.562617 | 3_1:+65879100 | None:intergenic |
| CATCATTCTCATGCTTCTCG+TGG | 0.564670 | 3_1:-65880495 | Msa0368910:CDS |
| GATGATGAAGGTGAAGAATG+TGG | 0.574659 | 3_1:-65880652 | Msa0368910:CDS |
| GAAGAATTGATGATAGGTGA+AGG | 0.574935 | 3_1:+65881321 | None:intergenic |
| GTATACACAGTCGGTTTCTG+AGG | 0.576407 | 3_1:+65879327 | None:intergenic |
| ATATATAATGAAACAGTATG+TGG | 0.583697 | 3_1:-65880799 | Msa0368910:CDS |
| AAATGTTACTTACAATACGT+TGG | 0.589157 | 3_1:+65881262 | None:intergenic |
| TAATAACAAGAAGATGATGA+AGG | 0.589470 | 3_1:-65880664 | Msa0368910:CDS |
| TAATGCTGGGAGTGATGAGT+TGG | 0.592702 | 3_1:+65881289 | None:intergenic |
| AGTAATGTATGAGAGTATGA+AGG | 0.594575 | 3_1:+65881691 | None:intergenic |
| CAGTATGTGGCTGCAGTGGG+AGG | 0.599898 | 3_1:-65880786 | Msa0368910:CDS |
| GATAGTTCGACACACGGTGT+GGG | 0.600130 | 3_1:-65879416 | Msa0368910:CDS |
| ATCAGACCACGTTACAAAGA+GGG | 0.600841 | 3_1:-65881754 | Msa0368910:five_prime_UTR |
| GACGCGTTCGAGGACACGAA+TGG | 0.602321 | 3_1:-65879191 | Msa0368910:CDS |
| AGTACTTATCCTAAAAGAAG+CGG | 0.603376 | 3_1:+65879006 | None:intergenic |
| AGAAAGAGCATTGAATTCAG+TGG | 0.603658 | 3_1:-65880763 | Msa0368910:CDS |
| AGAAACCGACTGTGTATACT+GGG | 0.603974 | 3_1:-65879323 | Msa0368910:CDS |
| GAAACAGTATGTGGCTGCAG+TGG | 0.604588 | 3_1:-65880790 | Msa0368910:CDS |
| ATATAACATTCACTGATACA+TGG | 0.608722 | 3_1:-65878890 | Msa0368910:three_prime_UTR |
| GGTTTCCCAGTATACACAGT+CGG | 0.616697 | 3_1:+65879318 | None:intergenic |
| TTTCTCCCCAATGCATACTG+AGG | 0.616709 | 3_1:+65879522 | None:intergenic |
| AGGTCTATTAGTGCAGCTAG+AGG | 0.617722 | 3_1:-65879374 | Msa0368910:CDS |
| TACTACTAGTGAGAGTGATG+AGG | 0.620206 | 3_1:-65878948 | Msa0368910:CDS |
| AGAGTGGAACCATGAAAGCA+TGG | 0.620499 | 3_1:-65881470 | Msa0368910:CDS |
| GAAGCATGAGAATGATGCCA+AGG | 0.624913 | 3_1:+65880501 | None:intergenic |
| AAACAGTATGTGGCTGCAGT+GGG | 0.627362 | 3_1:-65880789 | Msa0368910:CDS |
| TATCAGACCACGTTACAAAG+AGG | 0.629841 | 3_1:-65881755 | Msa0368910:five_prime_UTR |
| AGGACAGTGCGGTGGTGGTG+TGG | 0.638251 | 3_1:-65879068 | Msa0368910:CDS |
| ATAGTTCGACACACGGTGTG+GGG | 0.638997 | 3_1:-65879415 | Msa0368910:CDS |
| AGATAGTTCGACACACGGTG+TGG | 0.639805 | 3_1:-65879417 | Msa0368910:CDS |
| GAAGAATGTGGAGATGAAAG+GGG | 0.641257 | 3_1:-65880640 | Msa0368910:CDS |
| TCTCTCTTCAAATCACTAGG+AGG | 0.642226 | 3_1:+65879103 | None:intergenic |
| TGATAACCAAAACTATAGGT+GGG | 0.644903 | 3_1:+65881730 | None:intergenic |
| AGCACATGCCGGGAAAACAA+AGG | 0.655287 | 3_1:-65879245 | Msa0368910:CDS |
| TCCTTCACCAAACCTAAACA+AGG | 0.662739 | 3_1:+65879219 | None:intergenic |
| GCTTGAAGTTCCTATACCTG+AGG | 0.677324 | 3_1:-65881508 | Msa0368910:CDS |
| GAAGAAACAGGACAGTGCGG+TGG | 0.680769 | 3_1:-65879076 | Msa0368910:CDS |
| CAAGACTATAGAACCGTCGA+CGG | 0.687874 | 3_1:-65879277 | Msa0368910:CDS |
| CGTAGAGATAGTTCGACACA+CGG | 0.691502 | 3_1:-65879422 | Msa0368910:CDS |
| GTGGGACCCTCTTTGTAACG+TGG | 0.696046 | 3_1:+65881748 | None:intergenic |
| GAGATGAAAGGGGAAATGGG+TGG | 0.699613 | 3_1:-65880630 | Msa0368910:CDS |
| AAACGTCTAAGAGGTCTAGG+TGG | 0.706543 | 3_1:+65880471 | None:intergenic |
| CAGCACCTCAGTATGCATTG+GGG | 0.719861 | 3_1:-65879527 | Msa0368910:CDS |
| CAAGAAGAAACAGGACAGTG+CGG | 0.758523 | 3_1:-65879079 | Msa0368910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATACAAAATCAAAA+AGG | + | chr3_1:65881691-65881710 | None:intergenic | 10.0% |
| !!! | CTTATTATTCTTAAATTTTG+TGG | - | chr3_1:65879000-65879019 | Msa0368910:CDS | 15.0% |
| !!! | AATATACTACTTTTTACATT+TGG | - | chr3_1:65879468-65879487 | Msa0368910:CDS | 15.0% |
| !!! | AAAGAAAAAACAAATGATTT+TGG | + | chr3_1:65880181-65880200 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTTCTTTCTTTAA+AGG | - | chr3_1:65880187-65880206 | Msa0368910:intron | 15.0% |
| !!! | TTGTTTTTTCTTTCTTTAAA+GGG | - | chr3_1:65880188-65880207 | Msa0368910:intron | 15.0% |
| !! | TAAGAAAGAAAATTAAGATA+TGG | + | chr3_1:65880818-65880837 | None:intergenic | 15.0% |
| !!! | GAAGTTGATTTTAATATTAA+AGG | - | chr3_1:65881451-65881470 | Msa0368910:CDS | 15.0% |
| !!! | ATATTGATAACCAAAACTAT+AGG | + | chr3_1:65878876-65878895 | None:intergenic | 20.0% |
| !! | AATAAGAAAGTTATAAGAGA+AGG | + | chr3_1:65878986-65879005 | None:intergenic | 20.0% |
| !! | TTTACAAAAATTGTTCGTAT+TGG | - | chr3_1:65879513-65879532 | Msa0368910:CDS | 20.0% |
| !! | ATATATAATGAAACAGTATG+TGG | - | chr3_1:65879800-65879819 | Msa0368910:intron | 20.0% |
| !! | ATGATTAAAATCCATAAAGT+TGG | + | chr3_1:65880413-65880432 | None:intergenic | 20.0% |
| !! | TTGAATCCAATTTGTAAAAT+CGG | - | chr3_1:65880508-65880527 | Msa0368910:CDS | 20.0% |
| !!! | AAGGGAAAATGTATTTTTAT+AGG | + | chr3_1:65880655-65880674 | None:intergenic | 20.0% |
| !!! | TTTGACTTTAACCTTTAAAA+GGG | + | chr3_1:65880756-65880775 | None:intergenic | 20.0% |
| !!! | TTTTGACTTTAACCTTTAAA+AGG | + | chr3_1:65880757-65880776 | None:intergenic | 20.0% |
| !!! | AAAACAATGATTTTTGTAAC+AGG | - | chr3_1:65881018-65881037 | Msa0368910:intron | 20.0% |
| !!! | AAACAATGATTTTTGTAACA+GGG | - | chr3_1:65881019-65881038 | Msa0368910:intron | 20.0% |
| !! | ATATACAAAATCAAAAAGGA+TGG | + | chr3_1:65881687-65881706 | None:intergenic | 20.0% |
| !! | AAAAAACAAGTTAAAAGTGA+AGG | + | chr3_1:65881772-65881791 | None:intergenic | 20.0% |
| !!! | TTTTAACTTGTTTTTTTCGT+TGG | - | chr3_1:65881776-65881795 | Msa0368910:five_prime_UTR | 20.0% |
| !! | AAAGTGATGAACAAAAATAA+AGG | - | chr3_1:65881799-65881818 | Msa0368910:five_prime_UTR | 20.0% |
| !! | AAATGTTACTTACAATACGT+TGG | + | chr3_1:65879340-65879359 | None:intergenic | 25.0% |
| !!! | AAGAAAAGAGAGTGTTTTTT+TGG | + | chr3_1:65879364-65879383 | None:intergenic | 25.0% |
| !! | AAAAAAACACTCTCTTTTCT+TGG | - | chr3_1:65879363-65879382 | Msa0368910:CDS | 25.0% |
| !!! | CCATTTTAGTCTTTATTTGT+AGG | + | chr3_1:65879577-65879596 | None:intergenic | 25.0% |
| ! | CCTACAAATAAAGACTAAAA+TGG | - | chr3_1:65879574-65879593 | Msa0368910:intron | 25.0% |
| !!! | AATTTAGCAGTTTTTGGTTT+TGG | + | chr3_1:65879663-65879682 | None:intergenic | 25.0% |
| ! | CTGCATAATCATAAAAAACA+TGG | + | chr3_1:65879763-65879782 | None:intergenic | 25.0% |
| !!! | CATGTTTTTTATGATTATGC+AGG | - | chr3_1:65879761-65879780 | Msa0368910:intron | 25.0% |
| ! | TAATAACAAGAAGATGATGA+AGG | - | chr3_1:65879935-65879954 | Msa0368910:intron | 25.0% |
| ! | GATTAGTACTAGTACTATAT+AGG | - | chr3_1:65880305-65880324 | Msa0368910:intron | 25.0% |
| ! | CAAATTGGATTCAAAATATC+AGG | + | chr3_1:65880502-65880521 | None:intergenic | 25.0% |
| ! | TTATTAAATGTTAAACCTCC+TGG | + | chr3_1:65880692-65880711 | None:intergenic | 25.0% |
| ! | AAGACAAAAATTGACCTATA+TGG | - | chr3_1:65880901-65880920 | Msa0368910:intron | 25.0% |
| ! | ATATAACATTCACTGATACA+TGG | - | chr3_1:65881709-65881728 | Msa0368910:five_prime_UTR | 25.0% |
| TGATAACCAAAACTATAGGT+GGG | + | chr3_1:65878872-65878891 | None:intergenic | 30.0% | |
| ! | TTGATAACCAAAACTATAGG+TGG | + | chr3_1:65878873-65878892 | None:intergenic | 30.0% |
| ! | AGTAATGTATGAGAGTATGA+AGG | + | chr3_1:65878911-65878930 | None:intergenic | 30.0% |
| AGAAGGATAAGAACTTAGAA+GGG | + | chr3_1:65878969-65878988 | None:intergenic | 30.0% | |
| CATCTTCTCTATCAAGATTA+GGG | + | chr3_1:65879058-65879077 | None:intergenic | 30.0% | |
| GTAAAAATTTCCTCAGGTAT+AGG | + | chr3_1:65879104-65879123 | None:intergenic | 30.0% | |
| TTCTGTGTAAAAATTTCCTC+AGG | + | chr3_1:65879110-65879129 | None:intergenic | 30.0% | |
| ! | GAAATTTTTACACAGAAGAG+TGG | - | chr3_1:65879113-65879132 | Msa0368910:CDS | 30.0% |
| ATGATAGGTGAAGGAATTAA+TGG | + | chr3_1:65879272-65879291 | None:intergenic | 30.0% | |
| ! | TTGTCAGAAGAATTGATGAT+AGG | + | chr3_1:65879287-65879306 | None:intergenic | 30.0% |
| ! | CTAGCAAATTTAGCAGTTTT+TGG | + | chr3_1:65879669-65879688 | None:intergenic | 30.0% |
| TTTGTTTGTATGCAAAAGAG+TGG | - | chr3_1:65880267-65880286 | Msa0368910:intron | 30.0% | |
| TAGTACTAGTACTATATAGG+TGG | - | chr3_1:65880308-65880327 | Msa0368910:intron | 30.0% | |
| AGTACTAGTACTATATAGGT+GGG | - | chr3_1:65880309-65880328 | Msa0368910:intron | 30.0% | |
| ATCATTCTACTTGAGAACTT+TGG | - | chr3_1:65880343-65880362 | Msa0368910:intron | 30.0% | |
| GTATAGTCACAAATGATGTT+AGG | + | chr3_1:65880391-65880410 | None:intergenic | 30.0% | |
| TTGTGACTATACCAACTTTA+TGG | - | chr3_1:65880399-65880418 | Msa0368910:intron | 30.0% | |
| ! | CACATTCCGATTTTACAAAT+TGG | + | chr3_1:65880517-65880536 | None:intergenic | 30.0% |
| ! | TTTTATAGGCAAGCTAAGTT+AGG | + | chr3_1:65880641-65880660 | None:intergenic | 30.0% |
| ! | GGAATTTTCTTCCCTTTTAA+AGG | - | chr3_1:65880742-65880761 | Msa0368910:CDS | 30.0% |
| ! | AAGAATAAACAGCTTTAGCA+TGG | + | chr3_1:65880861-65880880 | None:intergenic | 30.0% |
| ! | CAATTTTTGTCTTAAGACCA+TGG | + | chr3_1:65880894-65880913 | None:intergenic | 30.0% |
| AATAAATTAGCTGTTGACCT+TGG | + | chr3_1:65881052-65881071 | None:intergenic | 30.0% | |
| TTGTATTAGTGACTCCATAT+TGG | + | chr3_1:65881305-65881324 | None:intergenic | 30.0% | |
| AGTACTTATCCTAAAAGAAG+CGG | + | chr3_1:65881596-65881615 | None:intergenic | 30.0% | |
| GAGAAGGATAAGAACTTAGA+AGG | + | chr3_1:65878970-65878989 | None:intergenic | 35.0% | |
| CCATCTTCTCTATCAAGATT+AGG | + | chr3_1:65879059-65879078 | None:intergenic | 35.0% | |
| CCTAATCTTGATAGAGAAGA+TGG | - | chr3_1:65879056-65879075 | Msa0368910:CDS | 35.0% | |
| ! | TCAGAGATTCAGCTTTTGTT+AGG | - | chr3_1:65879233-65879252 | Msa0368910:CDS | 35.0% |
| ! | GAAGAATTGATGATAGGTGA+AGG | + | chr3_1:65879281-65879300 | None:intergenic | 35.0% |
| !! | ATACGTTGGTCTTTAATGCT+GGG | + | chr3_1:65879326-65879345 | None:intergenic | 35.0% |
| !! | AATACGTTGGTCTTTAATGC+TGG | + | chr3_1:65879327-65879346 | None:intergenic | 35.0% |
| !!! | TGGTCATTGGTGTTTTGATT+CGG | + | chr3_1:65879643-65879662 | None:intergenic | 35.0% |
| !!! | CAGTTTTTGGTTTTGGTCAT+TGG | + | chr3_1:65879656-65879675 | None:intergenic | 35.0% |
| GATTATGCAGGAAGTTTCAA+TGG | - | chr3_1:65879773-65879792 | Msa0368910:intron | 35.0% | |
| !! | AGAAAGAGCATTGAATTCAG+TGG | - | chr3_1:65879836-65879855 | Msa0368910:intron | 35.0% |
| AGTGGATAGTATGTATGCAA+TGG | - | chr3_1:65879854-65879873 | Msa0368910:intron | 35.0% | |
| GTGGATAGTATGTATGCAAT+GGG | - | chr3_1:65879855-65879874 | Msa0368910:intron | 35.0% | |
| ! | CAACTTCAGAGTTTTCTTCA+GGG | - | chr3_1:65879892-65879911 | Msa0368910:intron | 35.0% |
| ! | AACTTCAGAGTTTTCTTCAG+GGG | - | chr3_1:65879893-65879912 | Msa0368910:intron | 35.0% |
| TGAAGAATGTGGAGATGAAA+GGG | - | chr3_1:65879958-65879977 | Msa0368910:intron | 35.0% | |
| AACTCTAAACACCATAACTC+TGG | + | chr3_1:65880017-65880036 | None:intergenic | 35.0% | |
| ! | AGAGTTATGGTGTTTAGAGT+TGG | - | chr3_1:65880016-65880035 | Msa0368910:intron | 35.0% |
| GTACTAGTACTATATAGGTG+GGG | - | chr3_1:65880310-65880329 | Msa0368910:intron | 35.0% | |
| CTTTAGCATGGACAAAAAAC+AGG | + | chr3_1:65880849-65880868 | None:intergenic | 35.0% | |
| ! | TATTCTTTTGCCTCTAACCA+TGG | - | chr3_1:65880874-65880893 | Msa0368910:intron | 35.0% |
| GTATGTGTATTGCACCATAT+AGG | + | chr3_1:65880918-65880937 | None:intergenic | 35.0% | |
| TGTATACTGGGAAACCAATA+TGG | - | chr3_1:65881288-65881307 | Msa0368910:CDS | 35.0% | |
| !! | AAACAAAGGTGTCCTTGTTT+AGG | - | chr3_1:65881368-65881387 | Msa0368910:CDS | 35.0% |
| TGTTCTCTCTTCAAATCACT+AGG | + | chr3_1:65881502-65881521 | None:intergenic | 35.0% | |
| AAGAGAGAACAAGAAGAAAC+AGG | - | chr3_1:65881511-65881530 | Msa0368910:CDS | 35.0% | |
| TGGTTAAGTGTTTGTAGTTG+AGG | - | chr3_1:65881729-65881748 | Msa0368910:five_prime_UTR | 35.0% | |
| TATCAGACCACGTTACAAAG+AGG | - | chr3_1:65878844-65878863 | Msa0368910:three_prime_UTR | 40.0% | |
| ATCAGACCACGTTACAAAGA+GGG | - | chr3_1:65878845-65878864 | Msa0368910:three_prime_UTR | 40.0% | |
| ! | CATGGCAGAATGTGAAGTTT+TGG | - | chr3_1:65879147-65879166 | Msa0368910:CDS | 40.0% |
| !! | CAGCTTTTGTTAGGTGTTGT+AGG | - | chr3_1:65879242-65879261 | Msa0368910:CDS | 40.0% |
| TGCAATGGGACAAGTGAAAA+TGG | - | chr3_1:65879869-65879888 | Msa0368910:intron | 40.0% | |
| ! | GCAACTTCAGAGTTTTCTTC+AGG | - | chr3_1:65879891-65879910 | Msa0368910:intron | 40.0% |
| ! | AGAGTTTTCTTCAGGGGAAA+GGG | - | chr3_1:65879899-65879918 | Msa0368910:intron | 40.0% |
| GATGATGAAGGTGAAGAATG+TGG | - | chr3_1:65879947-65879966 | Msa0368910:intron | 40.0% | |
| GTGAAGAATGTGGAGATGAA+AGG | - | chr3_1:65879957-65879976 | Msa0368910:intron | 40.0% | |
| GAAGAATGTGGAGATGAAAG+GGG | - | chr3_1:65879959-65879978 | Msa0368910:intron | 40.0% | |
| ! | GTTATGGTGTTTAGAGTTGG+TGG | - | chr3_1:65880019-65880038 | Msa0368910:intron | 40.0% |
| !! | TGTTTAGAGTTGGTGGTTTC+TGG | - | chr3_1:65880026-65880045 | Msa0368910:intron | 40.0% |
| TCTGGTAACAAGATTAGTGC+AGG | - | chr3_1:65880044-65880063 | Msa0368910:intron | 40.0% | |
| AAGATTAGTGCAGGAAGTGA+TGG | - | chr3_1:65880053-65880072 | Msa0368910:intron | 40.0% | |
| ! | GAAGTGATGGAAAAGTTGCT+TGG | - | chr3_1:65880066-65880085 | Msa0368910:intron | 40.0% |
| AAGAAACGTCTAAGAGGTCT+AGG | + | chr3_1:65880134-65880153 | None:intergenic | 40.0% | |
| ACCTCTTAGACGTTTCTTAC+AGG | - | chr3_1:65880136-65880155 | Msa0368910:intron | 40.0% | |
| ACCTGTAAGAAACGTCTAAG+AGG | + | chr3_1:65880140-65880159 | None:intergenic | 40.0% | |
| CTGAAATCAGACCGTTCAAA+TGG | + | chr3_1:65880460-65880479 | None:intergenic | 40.0% | |
| TGCATTCTACTCTAGACAGT+TGG | + | chr3_1:65880721-65880740 | None:intergenic | 40.0% | |
| ! | AACTGTCTAGAGTAGAATGC+AGG | - | chr3_1:65880720-65880739 | Msa0368910:CDS | 40.0% |
| ! | ACTGTCTAGAGTAGAATGCA+GGG | - | chr3_1:65880721-65880740 | Msa0368910:CDS | 40.0% |
| TGTCTTAAGACCATGGTTAG+AGG | + | chr3_1:65880887-65880906 | None:intergenic | 40.0% | |
| AGAAACCGACTGTGTATACT+GGG | - | chr3_1:65881276-65881295 | Msa0368910:CDS | 40.0% | |
| ! | AAGGTGTCCTTGTTTAGGTT+TGG | - | chr3_1:65881373-65881392 | Msa0368910:CDS | 40.0% |
| !! | TCCTTGTTTAGGTTTGGTGA+AGG | - | chr3_1:65881379-65881398 | Msa0368910:CDS | 40.0% |
| TCCTTCACCAAACCTAAACA+AGG | + | chr3_1:65881383-65881402 | None:intergenic | 40.0% | |
| TCTCTCTTCAAATCACTAGG+AGG | + | chr3_1:65881499-65881518 | None:intergenic | 40.0% | |
| GAAGCGGAACGAATCTTATA+CGG | + | chr3_1:65881580-65881599 | None:intergenic | 40.0% | |
| ! | AGATTCGTTCCGCTTCTTTT+AGG | - | chr3_1:65881584-65881603 | Msa0368910:five_prime_UTR | 40.0% |
| TAAAGTAGCAGCTGTGAACT+TGG | - | chr3_1:65881618-65881637 | Msa0368910:five_prime_UTR | 40.0% | |
| TACTACTAGTGAGAGTGATG+AGG | - | chr3_1:65881651-65881670 | Msa0368910:five_prime_UTR | 40.0% | |
| TATGTCGTGTATGCACGCTT+TGG | + | chr3_1:65878818-65878837 | None:intergenic | 45.0% | |
| GCTTGAAGTTCCTATACCTG+AGG | - | chr3_1:65879091-65879110 | Msa0368910:CDS | 45.0% | |
| AGAGTGGAACCATGAAAGCA+TGG | - | chr3_1:65879129-65879148 | Msa0368910:CDS | 45.0% | |
| CACATTCTGCCATGCTTTCA+TGG | + | chr3_1:65879141-65879160 | None:intergenic | 45.0% | |
| TAATGCTGGGAGTGATGAGT+TGG | + | chr3_1:65879313-65879332 | None:intergenic | 45.0% | |
| AAACAGTATGTGGCTGCAGT+GGG | - | chr3_1:65879810-65879829 | Msa0368910:intron | 45.0% | |
| ! | CAGAGTTTTCTTCAGGGGAA+AGG | - | chr3_1:65879898-65879917 | Msa0368910:intron | 45.0% |
| ! | GAGTTTTCTTCAGGGGAAAG+GGG | - | chr3_1:65879900-65879919 | Msa0368910:intron | 45.0% |
| TGTGGAGATGAAAGGGGAAA+TGG | - | chr3_1:65879965-65879984 | Msa0368910:intron | 45.0% | |
| GTGGAGATGAAAGGGGAAAT+GGG | - | chr3_1:65879966-65879985 | Msa0368910:intron | 45.0% | |
| !!! | AAATGGGTGGTTTTGTGGTG+TGG | - | chr3_1:65879982-65880001 | Msa0368910:intron | 45.0% |
| TTGCTTGGAGACAAACTCCT+TGG | - | chr3_1:65880081-65880100 | Msa0368910:intron | 45.0% | |
| GAAGCATGAGAATGATGCCA+AGG | + | chr3_1:65880101-65880120 | None:intergenic | 45.0% | |
| CATCATTCTCATGCTTCTCG+TGG | - | chr3_1:65880104-65880123 | Msa0368910:intron | 45.0% | |
| AAACGTCTAAGAGGTCTAGG+TGG | + | chr3_1:65880131-65880150 | None:intergenic | 45.0% | |
| CCACAGTCAAGCCATTTGAA+CGG | - | chr3_1:65880446-65880465 | Msa0368910:intron | 45.0% | |
| TGAAACCATCGGACCAAGAT+GGG | + | chr3_1:65880546-65880565 | None:intergenic | 45.0% | |
| TTGAAACCATCGGACCAAGA+TGG | + | chr3_1:65880547-65880566 | None:intergenic | 45.0% | |
| CCTCATGCGATTGAAACCAT+CGG | + | chr3_1:65880557-65880576 | None:intergenic | 45.0% | |
| CGATGGTTTCAATCGCATGA+GGG | - | chr3_1:65880555-65880574 | Msa0368910:CDS | 45.0% | |
| TTGTCGCATTCGCACAATTC+AGG | + | chr3_1:65880592-65880611 | None:intergenic | 45.0% | |
| AATGTTAAACCTCCTGGCTC+TGG | + | chr3_1:65880686-65880705 | None:intergenic | 45.0% | |
| TGTAACAGGGTCTTGATCCA+AGG | - | chr3_1:65881032-65881051 | Msa0368910:intron | 45.0% | |
| TTCAGCACCTCAGTATGCAT+TGG | - | chr3_1:65881070-65881089 | Msa0368910:intron | 45.0% | |
| TCAGCACCTCAGTATGCATT+GGG | - | chr3_1:65881071-65881090 | Msa0368910:intron | 45.0% | |
| TTTCTCCCCAATGCATACTG+AGG | + | chr3_1:65881080-65881099 | None:intergenic | 45.0% | |
| CGTAGAGATAGTTCGACACA+CGG | - | chr3_1:65881177-65881196 | Msa0368910:intron | 45.0% | |
| GCACTAATAGACCTGTTCTC+TGG | + | chr3_1:65881219-65881238 | None:intergenic | 45.0% | |
| AGGTCTATTAGTGCAGCTAG+AGG | - | chr3_1:65881225-65881244 | Msa0368910:intron | 45.0% | |
| ! | GTATACACAGTCGGTTTCTG+AGG | + | chr3_1:65881275-65881294 | None:intergenic | 45.0% |
| CAGAAACCGACTGTGTATAC+TGG | - | chr3_1:65881275-65881294 | Msa0368910:CDS | 45.0% | |
| GGTTTCCCAGTATACACAGT+CGG | + | chr3_1:65881284-65881303 | None:intergenic | 45.0% | |
| CAAGACTATAGAACCGTCGA+CGG | - | chr3_1:65881322-65881341 | Msa0368910:CDS | 45.0% | |
| ! | TGCTATTTGAATGCCGTCGA+CGG | + | chr3_1:65881338-65881357 | None:intergenic | 45.0% |
| GGCATTCAAATAGCACATGC+CGG | - | chr3_1:65881343-65881362 | Msa0368910:CDS | 45.0% | |
| GCATTCAAATAGCACATGCC+GGG | - | chr3_1:65881344-65881363 | Msa0368910:CDS | 45.0% | |
| !!! | CAAGGACACCTTTGTTTTCC+CGG | + | chr3_1:65881365-65881384 | None:intergenic | 45.0% |
| CAAGAAGAAACAGGACAGTG+CGG | - | chr3_1:65881520-65881539 | Msa0368910:CDS | 45.0% | |
| ! | GAGGGTCCCACCTATAGTTT+TGG | - | chr3_1:65878863-65878882 | Msa0368910:three_prime_UTR | 50.0% |
| ! | GCTTTTGCTTCTGCTGCGTT+TGG | + | chr3_1:65879179-65879198 | None:intergenic | 50.0% |
| GCTTCCATGACAGCAGTGTT+TGG | - | chr3_1:65879200-65879219 | Msa0368910:CDS | 50.0% | |
| TCCATGACAGCAGTGTTTGG+AGG | - | chr3_1:65879203-65879222 | Msa0368910:CDS | 50.0% | |
| TCCTCCAAACACTGCTGTCA+TGG | + | chr3_1:65879207-65879226 | None:intergenic | 50.0% | |
| GAAACAGTATGTGGCTGCAG+TGG | - | chr3_1:65879809-65879828 | Msa0368910:intron | 50.0% | |
| GAGATGAAAGGGGAAATGGG+TGG | - | chr3_1:65879969-65879988 | Msa0368910:intron | 50.0% | |
| !! | AGGGGAAATGGGTGGTTTTG+TGG | - | chr3_1:65879977-65879996 | Msa0368910:intron | 50.0% |
| GGCAGAAGAGACCAGAGTTA+TGG | - | chr3_1:65880003-65880022 | Msa0368910:intron | 50.0% | |
| CCGTTCAAATGGCTTGACTG+TGG | + | chr3_1:65880449-65880468 | None:intergenic | 50.0% | |
| GAATGTGAACCCTCCCATCT+TGG | - | chr3_1:65880530-65880549 | Msa0368910:CDS | 50.0% | |
| CCGATGGTTTCAATCGCATG+AGG | - | chr3_1:65880554-65880573 | Msa0368910:CDS | 50.0% | |
| CAGCACCTCAGTATGCATTG+GGG | - | chr3_1:65881072-65881091 | Msa0368910:intron | 50.0% | |
| AGATAGTTCGACACACGGTG+TGG | - | chr3_1:65881182-65881201 | Msa0368910:intron | 50.0% | |
| GATAGTTCGACACACGGTGT+GGG | - | chr3_1:65881183-65881202 | Msa0368910:intron | 50.0% | |
| ATAGTTCGACACACGGTGTG+GGG | - | chr3_1:65881184-65881203 | Msa0368910:intron | 50.0% | |
| GGATACTTCAGCCAGAGAAC+AGG | - | chr3_1:65881205-65881224 | Msa0368910:intron | 50.0% | |
| AGCACATGCCGGGAAAACAA+AGG | - | chr3_1:65881354-65881373 | Msa0368910:CDS | 50.0% | |
| TTCGAGGACACGAATGGAAG+AGG | - | chr3_1:65881414-65881433 | Msa0368910:CDS | 50.0% | |
| GGACACGAATGGAAGAGGTT+TGG | - | chr3_1:65881419-65881438 | Msa0368910:CDS | 50.0% | |
| GTGGGACCCTCTTTGTAACG+TGG | + | chr3_1:65878854-65878873 | None:intergenic | 55.0% | |
| ACCATCGGACCAAGATGGGA+GGG | + | chr3_1:65880542-65880561 | None:intergenic | 55.0% | |
| AACCATCGGACCAAGATGGG+AGG | + | chr3_1:65880543-65880562 | None:intergenic | 55.0% | |
| !! | CTGGCTCTGGAGTGGCTTAA+GGG | + | chr3_1:65880673-65880692 | None:intergenic | 55.0% |
| !! | TAAACCTCCTGGCTCTGGAG+TGG | + | chr3_1:65880681-65880700 | None:intergenic | 55.0% |
| GAAGAAACAGGACAGTGCGG+TGG | - | chr3_1:65881523-65881542 | Msa0368910:CDS | 55.0% | |
| CAGTATGTGGCTGCAGTGGG+AGG | - | chr3_1:65879813-65879832 | Msa0368910:intron | 60.0% | |
| ACCCTCCCATCTTGGTCCGA+TGG | - | chr3_1:65880538-65880557 | Msa0368910:CDS | 60.0% | |
| !! | CCTGGCTCTGGAGTGGCTTA+AGG | + | chr3_1:65880674-65880693 | None:intergenic | 60.0% |
| CCTTAAGCCACTCCAGAGCC+AGG | - | chr3_1:65880671-65880690 | Msa0368910:CDS | 60.0% | |
| TAAGCCACTCCAGAGCCAGG+AGG | - | chr3_1:65880674-65880693 | Msa0368910:CDS | 60.0% | |
| AAGGACCTGAGACGCGTTCG+AGG | - | chr3_1:65881398-65881417 | Msa0368910:CDS | 60.0% | |
| GACGCGTTCGAGGACACGAA+TGG | - | chr3_1:65881408-65881427 | Msa0368910:CDS | 60.0% | |
| GAAACAGGACAGTGCGGTGG+TGG | - | chr3_1:65881526-65881545 | Msa0368910:CDS | 60.0% | |
| CGTGTCCTCGAACGCGTCTC+AGG | + | chr3_1:65881406-65881425 | None:intergenic | 65.0% | |
| ! | AGGACAGTGCGGTGGTGGTG+TGG | - | chr3_1:65881531-65881550 | Msa0368910:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 65878796 | 65881825 | 65878796 | ID=Msa0368910;Name=Msa0368910 |
| chr3_1 | mRNA | 65878796 | 65881825 | 65878796 | ID=Msa0368910-mRNA-1;Parent=Msa0368910;Name=Msa0368910-mRNA-1;_AED=0.01;_eAED=0.01;_QI=245|1|1|1|1|1|3|144|440 |
| chr3_1 | exon | 65878796 | 65879581 | 65878796 | ID=Msa0368910-mRNA-1:exon:13271;Parent=Msa0368910-mRNA-1 |
| chr3_1 | exon | 65880464 | 65880838 | 65880464 | ID=Msa0368910-mRNA-1:exon:13270;Parent=Msa0368910-mRNA-1 |
| chr3_1 | exon | 65881275 | 65881825 | 65881275 | ID=Msa0368910-mRNA-1:exon:13269;Parent=Msa0368910-mRNA-1 |
| chr3_1 | five_prime_UTR | 65881581 | 65881825 | 65881581 | ID=Msa0368910-mRNA-1:five_prime_utr;Parent=Msa0368910-mRNA-1 |
| chr3_1 | CDS | 65881275 | 65881580 | 65881275 | ID=Msa0368910-mRNA-1:cds;Parent=Msa0368910-mRNA-1 |
| chr3_1 | CDS | 65880464 | 65880838 | 65880464 | ID=Msa0368910-mRNA-1:cds;Parent=Msa0368910-mRNA-1 |
| chr3_1 | CDS | 65878940 | 65879581 | 65878940 | ID=Msa0368910-mRNA-1:cds;Parent=Msa0368910-mRNA-1 |
| chr3_1 | three_prime_UTR | 65878796 | 65878939 | 65878796 | ID=Msa0368910-mRNA-1:three_prime_utr;Parent=Msa0368910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
