Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508420 | XP_003600816.2 | 99.320 | 441 | 2 | 1 | 1 | 440 | 1 | 441 | 0.0 | 908 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508420 | G7JAK3 | 99.320 | 441 | 2 | 1 | 1 | 440 | 1 | 441 | 0.0 | 908 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0368910 | Msa0508420 | 0.855728 | 5.191651e-62 | -8.615850e-47 |
| Msa0416200 | Msa0508420 | 0.844761 | 6.187279e-59 | -8.615850e-47 |
| Msa0462830 | Msa0508420 | 0.811288 | 7.545760e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508420 | MtrunA17_Chr3g0112781 | 99.320 | 441 | 2 | 1 | 1 | 440 | 1 | 441 | 0.0 | 908 |
| Msa0508420 | MtrunA17_Chr5g0436191 | 71.136 | 440 | 109 | 6 | 1 | 440 | 1 | 422 | 0.0 | 610 |
| Msa0508420 | MtrunA17_Chr1g0154851 | 52.020 | 396 | 165 | 8 | 1 | 393 | 1 | 374 | 1.03e-142 | 412 |
| Msa0508420 | MtrunA17_Chr3g0141481 | 51.139 | 395 | 172 | 8 | 1 | 393 | 8 | 383 | 6.91e-135 | 393 |
| Msa0508420 | MtrunA17_Chr5g0403841 | 49.351 | 385 | 175 | 8 | 1 | 384 | 10 | 375 | 1.19e-131 | 384 |
| Msa0508420 | MtrunA17_Chr1g0152841 | 46.114 | 386 | 173 | 4 | 22 | 385 | 49 | 421 | 6.28e-123 | 365 |
| Msa0508420 | MtrunA17_Chr1g0207581 | 43.678 | 435 | 209 | 7 | 5 | 432 | 54 | 459 | 1.61e-122 | 364 |
| Msa0508420 | MtrunA17_Chr3g0134521 | 49.196 | 311 | 146 | 2 | 75 | 385 | 93 | 391 | 3.73e-114 | 341 |
| Msa0508420 | MtrunA17_Chr2g0309941 | 42.971 | 377 | 196 | 6 | 14 | 384 | 17 | 380 | 2.89e-106 | 320 |
| Msa0508420 | MtrunA17_Chr1g0176101 | 42.249 | 329 | 160 | 4 | 63 | 387 | 48 | 350 | 1.20e-88 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0508420 | AT5G05840.1 | 66.359 | 434 | 129 | 8 | 1 | 425 | 1 | 426 | 0.0 | 572 |
| Msa0508420 | AT3G55720.1 | 54.817 | 436 | 180 | 9 | 1 | 425 | 1 | 430 | 2.39e-159 | 457 |
| Msa0508420 | AT5G66740.1 | 51.795 | 390 | 166 | 7 | 1 | 388 | 1 | 370 | 3.10e-140 | 406 |
| Msa0508420 | AT1G75160.1 | 50.864 | 405 | 170 | 7 | 1 | 388 | 3 | 395 | 3.17e-133 | 389 |
| Msa0508420 | AT1G49840.1 | 47.105 | 380 | 187 | 3 | 6 | 385 | 78 | 443 | 3.18e-123 | 367 |
| Msa0508420 | AT3G19540.1 | 50.729 | 343 | 154 | 3 | 43 | 385 | 108 | 435 | 8.30e-122 | 363 |
| Msa0508420 | AT1G27690.1 | 44.675 | 385 | 193 | 7 | 6 | 385 | 41 | 410 | 1.52e-110 | 333 |
| Msa0508420 | AT1G79420.1 | 39.276 | 387 | 214 | 6 | 13 | 384 | 19 | 399 | 5.14e-98 | 300 |
| Msa0508420 | AT5G06610.1 | 38.992 | 377 | 200 | 8 | 14 | 387 | 4 | 353 | 3.86e-84 | 263 |
Find 103 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTAGAGTTGGTGGTTTC+TGG | 0.183311 | 3_4:-56391825 | Msa0508420:CDS |
| CACATTCTGCCAAGCTTTCA+TGG | 0.213108 | 3_4:+56392850 | None:intergenic |
| CGGAAACCGACTGCGTATAC+TGG | 0.252245 | 3_4:-56390575 | Msa0508420:CDS |
| ACCTCTTAGACGTTTCTTAC+AGG | 0.271687 | 3_4:-56391715 | Msa0508420:intron |
| GAGAAGAATAAGAACTTAGA+AGG | 0.286689 | 3_4:+56393020 | None:intergenic |
| ATGATAGGTGAAGGAATTAA+TGG | 0.298124 | 3_4:+56392719 | None:intergenic |
| AAACAAAAGTGTCCTTGTTT+AGG | 0.316474 | 3_4:-56390482 | Msa0508420:CDS |
| CTTGGCAGAATGTGAAGTTT+TGG | 0.316611 | 3_4:-56392841 | Msa0508420:CDS |
| CGTATACTGGGAAACCAATA+TGG | 0.331859 | 3_4:-56390562 | Msa0508420:CDS |
| CCATCTTCTCTATCAAGATT+AGG | 0.337748 | 3_4:+56392932 | None:intergenic |
| GTGGGTCCCACCTATAGTTT+TGG | 0.353993 | 3_4:-56393124 | Msa0508420:five_prime_UTR |
| TGCAATGGGACAAGTGAAAA+TGG | 0.354180 | 3_4:-56391982 | Msa0508420:CDS |
| GAAGCGGAACGAATCTTATA+TGG | 0.367433 | 3_4:+56390273 | None:intergenic |
| CATCTTCTCTATCAAGATTA+GGG | 0.370073 | 3_4:+56392933 | None:intergenic |
| GCTTCCATGACAGCAGTGTT+TGG | 0.390938 | 3_4:-56392788 | Msa0508420:CDS |
| TCAGCACCTCAGTATGCATT+GGG | 0.397772 | 3_4:-56390779 | Msa0508420:CDS |
| TTATATATACAAATTCAAAA+AGG | 0.402681 | 3_4:+56390162 | None:intergenic |
| AATACGTTGGTCTTTAATGC+TGG | 0.407727 | 3_4:+56392664 | None:intergenic |
| AAAGTGTCCTTGTTTAGGTT+TGG | 0.412561 | 3_4:-56390477 | Msa0508420:CDS |
| TTGTATCAGTGACTCCATAT+TGG | 0.428348 | 3_4:+56390548 | None:intergenic |
| GTTATGGTGTTTAGAGTTGG+TGG | 0.430545 | 3_4:-56391832 | Msa0508420:CDS |
| TGTTATGCAGGAGGTTTCAA+TGG | 0.443220 | 3_4:-56392078 | Msa0508420:intron |
| AAGAGAGAACAAGAAGAAAC+AGG | 0.447548 | 3_4:-56390339 | Msa0508420:CDS |
| AGAAGAATAAGAACTTAGAA+GGG | 0.450176 | 3_4:+56393021 | None:intergenic |
| TAAAGTAGCAGCTGTGAACT+TGG | 0.453174 | 3_4:-56390232 | Msa0508420:CDS |
| CGTGTCCTCGAACGCGTCTC+AGG | 0.453618 | 3_4:+56390447 | None:intergenic |
| TTCAGCACCTCAGTATGCAT+TGG | 0.461198 | 3_4:-56390780 | Msa0508420:CDS |
| TCCTCCAAACACTGCTGTCA+TGG | 0.465204 | 3_4:+56392784 | None:intergenic |
| TGTGGAGATGAAAGGAGAAA+TGG | 0.466203 | 3_4:-56391886 | Msa0508420:CDS |
| TGGTTAAGTGTTTGTAGTTG+AGG | 0.466898 | 3_4:-56390125 | Msa0508420:three_prime_UTR |
| CCTAATCTTGATAGAGAAGA+TGG | 0.475513 | 3_4:-56392932 | Msa0508420:CDS |
| AAGAAACGTCTAAGAGGTCT+AGG | 0.477131 | 3_4:+56391720 | None:intergenic |
| CTTATTATTGTTAAATTCTG+TGG | 0.486773 | 3_4:-56392987 | Msa0508420:five_prime_UTR |
| ATATTGATAACCAAAACTAT+AGG | 0.486993 | 3_4:+56393114 | None:intergenic |
| GGAAACCGACTGCGTATACT+GGG | 0.493527 | 3_4:-56390574 | Msa0508420:CDS |
| AATAAATTAGCTGTTGACCT+TGG | 0.495236 | 3_4:+56390801 | None:intergenic |
| AAGATTAGTGCAGGAAGTGA+TGG | 0.496426 | 3_4:-56391798 | Msa0508420:CDS |
| GGACACGAATGGAAGAGGTT+TGG | 0.499414 | 3_4:-56390431 | Msa0508420:CDS |
| GTGGATAGTATGTATGCAAT+GGG | 0.505137 | 3_4:-56391996 | Msa0508420:CDS |
| ATACGTTGGTCTTTAATGCT+GGG | 0.506311 | 3_4:+56392665 | None:intergenic |
| TTCGAGGACACGAATGGAAG+AGG | 0.510195 | 3_4:-56390436 | Msa0508420:CDS |
| TCCTTGTTTAGGTTTGGTGA+AGG | 0.511552 | 3_4:-56390471 | Msa0508420:CDS |
| GTGGAGATGAAAGGAGAAAT+GGG | 0.511920 | 3_4:-56391885 | Msa0508420:CDS |
| TATGTCGTGTATGCACGCTT+TGG | 0.512725 | 3_4:+56393172 | None:intergenic |
| GGATACTTCAGCCAGAGAAC+AGG | 0.517748 | 3_4:-56390645 | Msa0508420:CDS |
| GTGAAGAATGTGGAGATGAA+AGG | 0.521540 | 3_4:-56391894 | Msa0508420:CDS |
| AGAGTTATGGTGTTTAGAGT+TGG | 0.521665 | 3_4:-56391835 | Msa0508420:CDS |
| TCTGGTAACAAGATTAGTGC+AGG | 0.522139 | 3_4:-56391807 | Msa0508420:CDS |
| GCACTAATAGACCTGTTCTC+TGG | 0.522738 | 3_4:+56390634 | None:intergenic |
| TTGTCAGAAGAATTGATGAT+AGG | 0.524340 | 3_4:+56392704 | None:intergenic |
| TTGCTTGGAGACAAACTCCT+TGG | 0.526233 | 3_4:-56391770 | Msa0508420:CDS |
| TTGATAACCAAAACTATAGG+TGG | 0.533720 | 3_4:+56393117 | None:intergenic |
| AAGGACCTGAGACGCGTTCG+AGG | 0.536027 | 3_4:-56390452 | Msa0508420:CDS |
| GGCAGAAGAGACCAGAGTTA+TGG | 0.539644 | 3_4:-56391848 | Msa0508420:CDS |
| TGTAACAGGGTCTTGATCCA+AGG | 0.542455 | 3_4:-56390818 | Msa0508420:intron |
| GAAGTGATGGAAAAGTTGCT+TGG | 0.551623 | 3_4:-56391785 | Msa0508420:CDS |
| AACTCTAAACACCATAACTC+TGG | 0.556386 | 3_4:+56391837 | None:intergenic |
| AGTGGATAGTATGTATGCAA+TGG | 0.556770 | 3_4:-56391997 | Msa0508420:CDS |
| AGAGTGGAACCATGAAAGCT+TGG | 0.558105 | 3_4:-56392859 | Msa0508420:CDS |
| GCATTCAAATAGCACATGCC+GGG | 0.559763 | 3_4:-56390506 | Msa0508420:CDS |
| TCCATGACAGCAGTGTTTGG+AGG | 0.559909 | 3_4:-56392785 | Msa0508420:CDS |
| GGCATTCAAATAGCACATGC+CGG | 0.560172 | 3_4:-56390507 | Msa0508420:CDS |
| TGTTCTCTCTTCAAATCACT+AGG | 0.562617 | 3_4:+56390351 | None:intergenic |
| CATCATTCTCATGCTTCTCG+TGG | 0.564670 | 3_4:-56391747 | Msa0508420:CDS |
| ACCTGTAAGAAACGTCTAAG+AGG | 0.565584 | 3_4:+56391714 | None:intergenic |
| GATGATGAAGGTGAAGAATG+TGG | 0.574659 | 3_4:-56391904 | Msa0508420:CDS |
| GAAGAATTGATGATAGGTGA+AGG | 0.574935 | 3_4:+56392710 | None:intergenic |
| ATATATAATGAAACAATATG+TGG | 0.584137 | 3_4:-56392051 | Msa0508420:CDS |
| AAATGTTACTTACAATACGT+TGG | 0.589157 | 3_4:+56392651 | None:intergenic |
| TAATAACAAGAAGATGATGA+AGG | 0.589470 | 3_4:-56391916 | Msa0508420:CDS |
| CTTGCTCAAACTCAAGTCCT+CGG | 0.591279 | 3_4:-56390595 | Msa0508420:CDS |
| TAATGCTGGGAGTGATGAGT+TGG | 0.592702 | 3_4:+56392678 | None:intergenic |
| GGTTTCCCAGTATACGCAGT+CGG | 0.593517 | 3_4:+56390569 | None:intergenic |
| GAAACAGGACAGTGTGGTGG+TGG | 0.596993 | 3_4:-56390324 | Msa0508420:CDS |
| CAATATGTGGCTGCAGTGGG+AGG | 0.599898 | 3_4:-56392038 | Msa0508420:CDS |
| GATAGTTCGACACACGGTGT+GGG | 0.600130 | 3_4:-56390667 | Msa0508420:CDS |
| GAAACAATATGTGGCTGCAG+TGG | 0.602292 | 3_4:-56392042 | Msa0508420:CDS |
| GACGCGTTCGAGGACACGAA+TGG | 0.602321 | 3_4:-56390442 | Msa0508420:CDS |
| AGTACTTATCCTAAAAGAAG+CGG | 0.603376 | 3_4:+56390257 | None:intergenic |
| AGAAAGAGCATTGAATTCAG+TGG | 0.603658 | 3_4:-56392015 | Msa0508420:CDS |
| ATATAACATTCACTGATACA+TGG | 0.608722 | 3_4:-56390145 | Msa0508420:three_prime_UTR |
| ATCAGACCACGTTACAAAGT+GGG | 0.609347 | 3_4:-56393142 | Msa0508420:five_prime_UTR |
| TATCAGACCACGTTACAAAG+TGG | 0.615870 | 3_4:-56393143 | Msa0508420:five_prime_UTR |
| TTTCTCCCCAATGCATACTG+AGG | 0.616709 | 3_4:+56390773 | None:intergenic |
| TACTACTAGTGAGAGTGATG+AGG | 0.620206 | 3_4:-56390199 | Msa0508420:CDS |
| GAAGCATGAGAATGATGCCA+AGG | 0.624913 | 3_4:+56391753 | None:intergenic |
| AAACAATATGTGGCTGCAGT+GGG | 0.627362 | 3_4:-56392041 | Msa0508420:CDS |
| ATAGTTCGACACACGGTGTG+GGG | 0.638997 | 3_4:-56390666 | Msa0508420:CDS |
| AGATAGTTCGACACACGGTG+TGG | 0.639805 | 3_4:-56390668 | Msa0508420:CDS |
| TCTCTCTTCAAATCACTAGG+AGG | 0.642226 | 3_4:+56390354 | None:intergenic |
| GTATACGCAGTCGGTTTCCG+AGG | 0.644255 | 3_4:+56390578 | None:intergenic |
| TGATAACCAAAACTATAGGT+GGG | 0.644903 | 3_4:+56393118 | None:intergenic |
| TCCTTCACCAAACCTAAACA+AGG | 0.662739 | 3_4:+56390470 | None:intergenic |
| AGGACAGTGTGGTGGTGGTG+TGG | 0.667247 | 3_4:-56390319 | Msa0508420:CDS |
| CAAGACTATAGAACTGTCGA+CGG | 0.673021 | 3_4:-56390528 | Msa0508420:CDS |
| GAAGAAACAGGACAGTGTGG+TGG | 0.680769 | 3_4:-56390327 | Msa0508420:CDS |
| GCTTGAAGTTCCTATACCAG+AGG | 0.689832 | 3_4:-56392897 | Msa0508420:CDS |
| CGTAGAGATAGTTCGACACA+CGG | 0.691502 | 3_4:-56390673 | Msa0508420:CDS |
| AAACGTCTAAGAGGTCTAGG+TGG | 0.706543 | 3_4:+56391723 | None:intergenic |
| GTGGGACCCACTTTGTAACG+TGG | 0.715562 | 3_4:+56393136 | None:intergenic |
| CAAGAAGAAACAGGACAGTG+TGG | 0.718095 | 3_4:-56390330 | Msa0508420:CDS |
| CAGCACCTCAGTATGCATTG+GGG | 0.719861 | 3_4:-56390778 | Msa0508420:CDS |
| GAGATGAAAGGAGAAATGGG+TGG | 0.807131 | 3_4:-56391882 | Msa0508420:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATACAAATTCAAAA+AGG | + | chr3_4:56393076-56393095 | None:intergenic | 10.0% |
| !! | AAGACTAAAATGAATATTAA+AGG | - | chr3_4:56390968-56390987 | Msa0508420:intron | 15.0% |
| !! | ATATATAATGAAACAATATG+TGG | - | chr3_4:56391184-56391203 | Msa0508420:intron | 15.0% |
| !!! | AAAGAAAAAACAAATGATTT+TGG | + | chr3_4:56391565-56391584 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTTCTTTCTTTAA+AGG | - | chr3_4:56391571-56391590 | Msa0508420:intron | 15.0% |
| !!! | TTGTTTTTTCTTTCTTTAAA+GGG | - | chr3_4:56391572-56391591 | Msa0508420:intron | 15.0% |
| !!! | AAGGAAAAATGTATTTTTAT+AGG | + | chr3_4:56392040-56392059 | None:intergenic | 15.0% |
| !! | TAAGAAAGAAAATTAAGATA+TGG | + | chr3_4:56392203-56392222 | None:intergenic | 15.0% |
| !!! | GAAGTTGATTTTAATATTAA+AGG | - | chr3_4:56392836-56392855 | Msa0508420:CDS | 15.0% |
| !!! | ATATTGATAACCAAAACTAT+AGG | + | chr3_4:56390124-56390143 | None:intergenic | 20.0% |
| !! | CTTATTATTGTTAAATTCTG+TGG | - | chr3_4:56390248-56390267 | Msa0508420:CDS | 20.0% |
| !!! | AAGAAAAAAGAGTGTTTTTT+TGG | + | chr3_4:56390611-56390630 | None:intergenic | 20.0% |
| !!! | AAAAAAACACTCTTTTTTCT+TGG | - | chr3_4:56390610-56390629 | Msa0508420:CDS | 20.0% |
| !! | AAATTCTGAATCAAAATCAA+TGG | - | chr3_4:56391018-56391037 | Msa0508420:intron | 20.0% |
| !! | TGCATAACATAAAAAACAAA+TGG | + | chr3_4:56391146-56391165 | None:intergenic | 20.0% |
| !!! | ATTTGTTTTTTATGTTATGC+AGG | - | chr3_4:56391145-56391164 | Msa0508420:intron | 20.0% |
| !! | ATGATTAAAATCCATAAAGT+TGG | + | chr3_4:56391798-56391817 | None:intergenic | 20.0% |
| !!! | TTTGACTTTAACCTTTAAAA+GGG | + | chr3_4:56392141-56392160 | None:intergenic | 20.0% |
| !!! | TTTTGACTTTAACCTTTAAA+AGG | + | chr3_4:56392142-56392161 | None:intergenic | 20.0% |
| !!! | AAAACAATGATTTTTGTAAC+AGG | - | chr3_4:56392403-56392422 | Msa0508420:intron | 20.0% |
| !!! | AAACAATGATTTTTGTAACA+GGG | - | chr3_4:56392404-56392423 | Msa0508420:intron | 20.0% |
| !! | ATATACAAATTCAAAAAGGA+TGG | + | chr3_4:56393072-56393091 | None:intergenic | 20.0% |
| !! | AAAAAACAAGTTAAAAGTGA+AGG | + | chr3_4:56393160-56393179 | None:intergenic | 20.0% |
| ! | AGAAGAATAAGAACTTAGAA+GGG | + | chr3_4:56390217-56390236 | None:intergenic | 25.0% |
| !! | AAATGTTACTTACAATACGT+TGG | + | chr3_4:56390587-56390606 | None:intergenic | 25.0% |
| ! | AATATACTACTTCTTACGTT+TGG | - | chr3_4:56390751-56390770 | Msa0508420:CDS | 25.0% |
| !! | NTTGCAAAATTTGTTCGTAT+TGG | - | chr3_4:56390896-56390915 | Msa0508420:intron | 25.0% |
| !!! | CATTTTAGTCTTTATTTTGC+AGG | + | chr3_4:56390960-56390979 | None:intergenic | 25.0% |
| !!! | AATTTACCACTTTTTGGTTT+TGG | + | chr3_4:56391044-56391063 | None:intergenic | 25.0% |
| ! | TAATAACAAGAAGATGATGA+AGG | - | chr3_4:56391319-56391338 | Msa0508420:intron | 25.0% |
| ! | GATTAGTACTAGTACTATAT+AGG | - | chr3_4:56391689-56391708 | Msa0508420:intron | 25.0% |
| ! | TCGAATCCAATTTGTAAAAT+TGG | - | chr3_4:56391893-56391912 | Msa0508420:CDS | 25.0% |
| !! | CACATTCCAATTTTACAAAT+TGG | + | chr3_4:56391902-56391921 | None:intergenic | 25.0% |
| ! | TTATTAAATGTTAAACCTCC+TGG | + | chr3_4:56392077-56392096 | None:intergenic | 25.0% |
| !! | CAATTTTTGTCTTAAGACTA+TGG | + | chr3_4:56392279-56392298 | None:intergenic | 25.0% |
| ! | AAGACAAAAATTGACCTATA+TGG | - | chr3_4:56392286-56392305 | Msa0508420:intron | 25.0% |
| ! | ATATAACATTCACTGATACA+TGG | - | chr3_4:56393090-56393109 | Msa0508420:five_prime_UTR | 25.0% |
| ! | AAAGTGATGAACAAAAATGA+AGG | - | chr3_4:56393187-56393206 | Msa0508420:five_prime_UTR | 25.0% |
| TGATAACCAAAACTATAGGT+GGG | + | chr3_4:56390120-56390139 | None:intergenic | 30.0% | |
| ! | TTGATAACCAAAACTATAGG+TGG | + | chr3_4:56390121-56390140 | None:intergenic | 30.0% |
| GAGAAGAATAAGAACTTAGA+AGG | + | chr3_4:56390218-56390237 | None:intergenic | 30.0% | |
| CATCTTCTCTATCAAGATTA+GGG | + | chr3_4:56390305-56390324 | None:intergenic | 30.0% | |
| GTAAAAATTTCCTCTGGTAT+AGG | + | chr3_4:56390351-56390370 | None:intergenic | 30.0% | |
| TTGTGTGTAAAAATTTCCTC+TGG | + | chr3_4:56390357-56390376 | None:intergenic | 30.0% | |
| ! | GAAATTTTTACACACAAGAG+TGG | - | chr3_4:56390360-56390379 | Msa0508420:CDS | 30.0% |
| ATGATAGGTGAAGGAATTAA+TGG | + | chr3_4:56390519-56390538 | None:intergenic | 30.0% | |
| ! | TTGTCAGAAGAATTGATGAT+AGG | + | chr3_4:56390534-56390553 | None:intergenic | 30.0% |
| !!! | TGTTTTTTATGTTATGCAGG+AGG | - | chr3_4:56391148-56391167 | Msa0508420:intron | 30.0% |
| TTTGTTTGTATGCAAAAGAG+TGG | - | chr3_4:56391651-56391670 | Msa0508420:intron | 30.0% | |
| TAGTACTAGTACTATATAGG+TGG | - | chr3_4:56391692-56391711 | Msa0508420:intron | 30.0% | |
| AGTACTAGTACTATATAGGT+GGG | - | chr3_4:56391693-56391712 | Msa0508420:intron | 30.0% | |
| ATCATTCTACTTGAGAACTT+TGG | - | chr3_4:56391727-56391746 | Msa0508420:CDS | 30.0% | |
| GTATAGTCAGAAATGATGTT+AGG | + | chr3_4:56391776-56391795 | None:intergenic | 30.0% | |
| TTCTGACTATACCAACTTTA+TGG | - | chr3_4:56391784-56391803 | Msa0508420:CDS | 30.0% | |
| !! | TGGATTTTAATCATACTGTC+AGG | - | chr3_4:56391804-56391823 | Msa0508420:CDS | 30.0% |
| CAAATTGGATTCGAAATATC+AGG | + | chr3_4:56391887-56391906 | None:intergenic | 30.0% | |
| ! | TTTTATAGGCAAGCTAAGTT+AGG | + | chr3_4:56392026-56392045 | None:intergenic | 30.0% |
| ! | GGAATTTTCTTCCCTTTTAA+AGG | - | chr3_4:56392127-56392146 | Msa0508420:intron | 30.0% |
| ! | AAGAATAAACAGCTTTAGCA+TGG | + | chr3_4:56392246-56392265 | None:intergenic | 30.0% |
| AATAAATTAGCTGTTGACCT+TGG | + | chr3_4:56392437-56392456 | None:intergenic | 30.0% | |
| !! | AAACAAAAGTGTCCTTGTTT+AGG | - | chr3_4:56392753-56392772 | Msa0508420:CDS | 30.0% |
| AGTACTTATCCTAAAAGAAG+CGG | + | chr3_4:56392981-56393000 | None:intergenic | 30.0% | |
| CCATCTTCTCTATCAAGATT+AGG | + | chr3_4:56390306-56390325 | None:intergenic | 35.0% | |
| CCTAATCTTGATAGAGAAGA+TGG | - | chr3_4:56390303-56390322 | Msa0508420:CDS | 35.0% | |
| ! | TCAGAGATTCAGCTTTTGTT+AGG | - | chr3_4:56390480-56390499 | Msa0508420:CDS | 35.0% |
| ! | GAAGAATTGATGATAGGTGA+AGG | + | chr3_4:56390528-56390547 | None:intergenic | 35.0% |
| !! | ATACGTTGGTCTTTAATGCT+GGG | + | chr3_4:56390573-56390592 | None:intergenic | 35.0% |
| !! | AATACGTTGGTCTTTAATGC+TGG | + | chr3_4:56390574-56390593 | None:intergenic | 35.0% |
| !! | CTCGCAAATTTACCACTTTT+TGG | + | chr3_4:56391050-56391069 | None:intergenic | 35.0% |
| !! | AGAAAGAGCATTGAATTCAG+TGG | - | chr3_4:56391220-56391239 | Msa0508420:intron | 35.0% |
| AGTGGATAGTATGTATGCAA+TGG | - | chr3_4:56391238-56391257 | Msa0508420:intron | 35.0% | |
| GTGGATAGTATGTATGCAAT+GGG | - | chr3_4:56391239-56391258 | Msa0508420:intron | 35.0% | |
| ! | CAACTTCAGAGTTTTCTTCA+GGG | - | chr3_4:56391276-56391295 | Msa0508420:intron | 35.0% |
| ! | AACTTCAGAGTTTTCTTCAG+GGG | - | chr3_4:56391277-56391296 | Msa0508420:intron | 35.0% |
| AACTCTAAACACCATAACTC+TGG | + | chr3_4:56391401-56391420 | None:intergenic | 35.0% | |
| ! | AGAGTTATGGTGTTTAGAGT+TGG | - | chr3_4:56391400-56391419 | Msa0508420:intron | 35.0% |
| GTACTAGTACTATATAGGTG+GGG | - | chr3_4:56391694-56391713 | Msa0508420:intron | 35.0% | |
| CTTTAGCATGGACAAAAAAC+AGG | + | chr3_4:56392234-56392253 | None:intergenic | 35.0% | |
| TGTCTTAAGACTATGGTTAG+AGG | + | chr3_4:56392272-56392291 | None:intergenic | 35.0% | |
| GTATGTGTATTGCACCATAT+AGG | + | chr3_4:56392303-56392322 | None:intergenic | 35.0% | |
| TTGTATCAGTGACTCCATAT+TGG | + | chr3_4:56392690-56392709 | None:intergenic | 35.0% | |
| ! | AAAGTGTCCTTGTTTAGGTT+TGG | - | chr3_4:56392758-56392777 | Msa0508420:CDS | 35.0% |
| TGTTCTCTCTTCAAATCACT+AGG | + | chr3_4:56392887-56392906 | None:intergenic | 35.0% | |
| AAGAGAGAACAAGAAGAAAC+AGG | - | chr3_4:56392896-56392915 | Msa0508420:CDS | 35.0% | |
| TGGTTAAGTGTTTGTAGTTG+AGG | - | chr3_4:56393110-56393129 | Msa0508420:five_prime_UTR | 35.0% | |
| TATCAGACCACGTTACAAAG+TGG | - | chr3_4:56390092-56390111 | Msa0508420:three_prime_UTR | 40.0% | |
| ATCAGACCACGTTACAAAGT+GGG | - | chr3_4:56390093-56390112 | Msa0508420:three_prime_UTR | 40.0% | |
| ! | CTTGGCAGAATGTGAAGTTT+TGG | - | chr3_4:56390394-56390413 | Msa0508420:CDS | 40.0% |
| !! | CAGCTTTTGTTAGGTGTTGT+AGG | - | chr3_4:56390489-56390508 | Msa0508420:CDS | 40.0% |
| ACTAAATGAGCAAATGCCTC+TGG | + | chr3_4:56390695-56390714 | None:intergenic | 40.0% | |
| CAATGGCCAAAACCAAAAAG+TGG | - | chr3_4:56391035-56391054 | Msa0508420:intron | 40.0% | |
| TGTTATGCAGGAGGTTTCAA+TGG | - | chr3_4:56391157-56391176 | Msa0508420:intron | 40.0% | |
| AAACAATATGTGGCTGCAGT+GGG | - | chr3_4:56391194-56391213 | Msa0508420:intron | 40.0% | |
| TGCAATGGGACAAGTGAAAA+TGG | - | chr3_4:56391253-56391272 | Msa0508420:intron | 40.0% | |
| ! | GCAACTTCAGAGTTTTCTTC+AGG | - | chr3_4:56391275-56391294 | Msa0508420:intron | 40.0% |
| ! | AGAGTTTTCTTCAGGGGAAA+GGG | - | chr3_4:56391283-56391302 | Msa0508420:intron | 40.0% |
| GATGATGAAGGTGAAGAATG+TGG | - | chr3_4:56391331-56391350 | Msa0508420:intron | 40.0% | |
| GTGAAGAATGTGGAGATGAA+AGG | - | chr3_4:56391341-56391360 | Msa0508420:intron | 40.0% | |
| TGTGGAGATGAAAGGAGAAA+TGG | - | chr3_4:56391349-56391368 | Msa0508420:intron | 40.0% | |
| GTGGAGATGAAAGGAGAAAT+GGG | - | chr3_4:56391350-56391369 | Msa0508420:intron | 40.0% | |
| ! | GTTATGGTGTTTAGAGTTGG+TGG | - | chr3_4:56391403-56391422 | Msa0508420:intron | 40.0% |
| !! | TGTTTAGAGTTGGTGGTTTC+TGG | - | chr3_4:56391410-56391429 | Msa0508420:intron | 40.0% |
| TCTGGTAACAAGATTAGTGC+AGG | - | chr3_4:56391428-56391447 | Msa0508420:intron | 40.0% | |
| AAGATTAGTGCAGGAAGTGA+TGG | - | chr3_4:56391437-56391456 | Msa0508420:intron | 40.0% | |
| ! | GAAGTGATGGAAAAGTTGCT+TGG | - | chr3_4:56391450-56391469 | Msa0508420:intron | 40.0% |
| AAGAAACGTCTAAGAGGTCT+AGG | + | chr3_4:56391518-56391537 | None:intergenic | 40.0% | |
| ACCTCTTAGACGTTTCTTAC+AGG | - | chr3_4:56391520-56391539 | Msa0508420:intron | 40.0% | |
| ACCTGTAAGAAACGTCTAAG+AGG | + | chr3_4:56391524-56391543 | None:intergenic | 40.0% | |
| CTGAAATCAGACCGTTCAAA+TGG | + | chr3_4:56391845-56391864 | None:intergenic | 40.0% | |
| TCAAACCATCGGATCAAGAT+GGG | + | chr3_4:56391931-56391950 | None:intergenic | 40.0% | |
| TGCATTCTACTCTAGACAGT+TGG | + | chr3_4:56392106-56392125 | None:intergenic | 40.0% | |
| ! | AACTGTCTAGAGTAGAATGC+AGG | - | chr3_4:56392105-56392124 | Msa0508420:intron | 40.0% |
| ! | ACTGTCTAGAGTAGAATGCA+GGG | - | chr3_4:56392106-56392125 | Msa0508420:intron | 40.0% |
| CGTATACTGGGAAACCAATA+TGG | - | chr3_4:56392673-56392692 | Msa0508420:CDS | 40.0% | |
| CAAGACTATAGAACTGTCGA+CGG | - | chr3_4:56392707-56392726 | Msa0508420:CDS | 40.0% | |
| !!! | CAAGGACACTTTTGTTTTCC+CGG | + | chr3_4:56392750-56392769 | None:intergenic | 40.0% |
| !! | TCCTTGTTTAGGTTTGGTGA+AGG | - | chr3_4:56392764-56392783 | Msa0508420:CDS | 40.0% |
| TCCTTCACCAAACCTAAACA+AGG | + | chr3_4:56392768-56392787 | None:intergenic | 40.0% | |
| TCTCTCTTCAAATCACTAGG+AGG | + | chr3_4:56392884-56392903 | None:intergenic | 40.0% | |
| GAAGCGGAACGAATCTTATA+TGG | + | chr3_4:56392965-56392984 | None:intergenic | 40.0% | |
| ! | AGATTCGTTCCGCTTCTTTT+AGG | - | chr3_4:56392969-56392988 | Msa0508420:exon | 40.0% |
| TAAAGTAGCAGCTGTGAACT+TGG | - | chr3_4:56393003-56393022 | Msa0508420:five_prime_UTR | 40.0% | |
| TACTACTAGTGAGAGTGATG+AGG | - | chr3_4:56393036-56393055 | Msa0508420:five_prime_UTR | 40.0% | |
| TATGTCGTGTATGCACGCTT+TGG | + | chr3_4:56390066-56390085 | None:intergenic | 45.0% | |
| GCTTGAAGTTCCTATACCAG+AGG | - | chr3_4:56390338-56390357 | Msa0508420:CDS | 45.0% | |
| AGAGTGGAACCATGAAAGCT+TGG | - | chr3_4:56390376-56390395 | Msa0508420:CDS | 45.0% | |
| CACATTCTGCCAAGCTTTCA+TGG | + | chr3_4:56390388-56390407 | None:intergenic | 45.0% | |
| TAATGCTGGGAGTGATGAGT+TGG | + | chr3_4:56390560-56390579 | None:intergenic | 45.0% | |
| !! | AATTTTAACCAGTGCGCCAG+AGG | - | chr3_4:56390676-56390695 | Msa0508420:CDS | 45.0% |
| GAAACAATATGTGGCTGCAG+TGG | - | chr3_4:56391193-56391212 | Msa0508420:intron | 45.0% | |
| ! | CAGAGTTTTCTTCAGGGGAA+AGG | - | chr3_4:56391282-56391301 | Msa0508420:intron | 45.0% |
| ! | GAGTTTTCTTCAGGGGAAAG+GGG | - | chr3_4:56391284-56391303 | Msa0508420:intron | 45.0% |
| GAGATGAAAGGAGAAATGGG+TGG | - | chr3_4:56391353-56391372 | Msa0508420:intron | 45.0% | |
| !! | AGGAGAAATGGGTGGTTTTG+TGG | - | chr3_4:56391361-56391380 | Msa0508420:intron | 45.0% |
| !!! | AAATGGGTGGTTTTGTGGTG+TGG | - | chr3_4:56391366-56391385 | Msa0508420:intron | 45.0% |
| TTGCTTGGAGACAAACTCCT+TGG | - | chr3_4:56391465-56391484 | Msa0508420:intron | 45.0% | |
| GAAGCATGAGAATGATGCCA+AGG | + | chr3_4:56391485-56391504 | None:intergenic | 45.0% | |
| CATCATTCTCATGCTTCTCG+TGG | - | chr3_4:56391488-56391507 | Msa0508420:intron | 45.0% | |
| AAACGTCTAAGAGGTCTAGG+TGG | + | chr3_4:56391515-56391534 | None:intergenic | 45.0% | |
| CCACAGTCAAGCCATTTGAA+CGG | - | chr3_4:56391831-56391850 | Msa0508420:CDS | 45.0% | |
| CTCAAACCATCGGATCAAGA+TGG | + | chr3_4:56391932-56391951 | None:intergenic | 45.0% | |
| AATGTTAAACCTCCTGGCTC+TGG | + | chr3_4:56392071-56392090 | None:intergenic | 45.0% | |
| TGTAACAGGGTCTTGATCCA+AGG | - | chr3_4:56392417-56392436 | Msa0508420:intron | 45.0% | |
| TTCAGCACCTCAGTATGCAT+TGG | - | chr3_4:56392455-56392474 | Msa0508420:intron | 45.0% | |
| TCAGCACCTCAGTATGCATT+GGG | - | chr3_4:56392456-56392475 | Msa0508420:intron | 45.0% | |
| TTTCTCCCCAATGCATACTG+AGG | + | chr3_4:56392465-56392484 | None:intergenic | 45.0% | |
| CGTAGAGATAGTTCGACACA+CGG | - | chr3_4:56392562-56392581 | Msa0508420:intron | 45.0% | |
| GCACTAATAGACCTGTTCTC+TGG | + | chr3_4:56392604-56392623 | None:intergenic | 45.0% | |
| CTTGCTCAAACTCAAGTCCT+CGG | - | chr3_4:56392640-56392659 | Msa0508420:intron | 45.0% | |
| GGCATTCAAATAGCACATGC+CGG | - | chr3_4:56392728-56392747 | Msa0508420:CDS | 45.0% | |
| GCATTCAAATAGCACATGCC+GGG | - | chr3_4:56392729-56392748 | Msa0508420:CDS | 45.0% | |
| CAAGAAGAAACAGGACAGTG+TGG | - | chr3_4:56392905-56392924 | Msa0508420:CDS | 45.0% | |
| ! | GTGGGTCCCACCTATAGTTT+TGG | - | chr3_4:56390111-56390130 | Msa0508420:three_prime_UTR | 50.0% |
| ! | GCTTTTGCTTCTGCTGCGTT+TGG | + | chr3_4:56390426-56390445 | None:intergenic | 50.0% |
| GCTTCCATGACAGCAGTGTT+TGG | - | chr3_4:56390447-56390466 | Msa0508420:CDS | 50.0% | |
| TCCATGACAGCAGTGTTTGG+AGG | - | chr3_4:56390450-56390469 | Msa0508420:CDS | 50.0% | |
| TCCTCCAAACACTGCTGTCA+TGG | + | chr3_4:56390454-56390473 | None:intergenic | 50.0% | |
| GGCAGAAGAGACCAGAGTTA+TGG | - | chr3_4:56391387-56391406 | Msa0508420:intron | 50.0% | |
| CCGTTCAAATGGCTTGACTG+TGG | + | chr3_4:56391834-56391853 | None:intergenic | 50.0% | |
| ACCATCGGATCAAGATGGGA+GGG | + | chr3_4:56391927-56391946 | None:intergenic | 50.0% | |
| AACCATCGGATCAAGATGGG+AGG | + | chr3_4:56391928-56391947 | None:intergenic | 50.0% | |
| TTGTCGCAGTCGCACAATTC+AGG | + | chr3_4:56391977-56391996 | None:intergenic | 50.0% | |
| CAGCACCTCAGTATGCATTG+GGG | - | chr3_4:56392457-56392476 | Msa0508420:intron | 50.0% | |
| AGATAGTTCGACACACGGTG+TGG | - | chr3_4:56392567-56392586 | Msa0508420:intron | 50.0% | |
| GATAGTTCGACACACGGTGT+GGG | - | chr3_4:56392568-56392587 | Msa0508420:intron | 50.0% | |
| ATAGTTCGACACACGGTGTG+GGG | - | chr3_4:56392569-56392588 | Msa0508420:intron | 50.0% | |
| GGATACTTCAGCCAGAGAAC+AGG | - | chr3_4:56392590-56392609 | Msa0508420:intron | 50.0% | |
| GGAAACCGACTGCGTATACT+GGG | - | chr3_4:56392661-56392680 | Msa0508420:intron | 50.0% | |
| GGTTTCCCAGTATACGCAGT+CGG | + | chr3_4:56392669-56392688 | None:intergenic | 50.0% | |
| TTCGAGGACACGAATGGAAG+AGG | - | chr3_4:56392799-56392818 | Msa0508420:CDS | 50.0% | |
| GGACACGAATGGAAGAGGTT+TGG | - | chr3_4:56392804-56392823 | Msa0508420:CDS | 50.0% | |
| GAAGAAACAGGACAGTGTGG+TGG | - | chr3_4:56392908-56392927 | Msa0508420:CDS | 50.0% | |
| GTGGGACCCACTTTGTAACG+TGG | + | chr3_4:56390102-56390121 | None:intergenic | 55.0% | |
| CAATATGTGGCTGCAGTGGG+AGG | - | chr3_4:56391197-56391216 | Msa0508420:intron | 55.0% | |
| ACCCTCCCATCTTGATCCGA+TGG | - | chr3_4:56391923-56391942 | Msa0508420:CDS | 55.0% | |
| CCTCGTGCGACTCAAACCAT+CGG | + | chr3_4:56391942-56391961 | None:intergenic | 55.0% | |
| CGATGGTTTGAGTCGCACGA+GGG | - | chr3_4:56391940-56391959 | Msa0508420:CDS | 55.0% | |
| !! | TAAACCTCCTGGCTCTGGAG+TGG | + | chr3_4:56392066-56392085 | None:intergenic | 55.0% |
| ! | GTATACGCAGTCGGTTTCCG+AGG | + | chr3_4:56392660-56392679 | None:intergenic | 55.0% |
| CGGAAACCGACTGCGTATAC+TGG | - | chr3_4:56392660-56392679 | Msa0508420:intron | 55.0% | |
| GAAACAGGACAGTGTGGTGG+TGG | - | chr3_4:56392911-56392930 | Msa0508420:CDS | 55.0% | |
| AGCAAATGCCTCTGGCGCAC+TGG | + | chr3_4:56390687-56390706 | None:intergenic | 60.0% | |
| CCGATGGTTTGAGTCGCACG+AGG | - | chr3_4:56391939-56391958 | Msa0508420:CDS | 60.0% | |
| !! | CCTGGCTCTGGAGTGGCTTA+AGG | + | chr3_4:56392059-56392078 | None:intergenic | 60.0% |
| CCTTAAGCCACTCCAGAGCC+AGG | - | chr3_4:56392056-56392075 | Msa0508420:CDS | 60.0% | |
| TAAGCCACTCCAGAGCCAGG+AGG | - | chr3_4:56392059-56392078 | Msa0508420:CDS | 60.0% | |
| AAGGACCTGAGACGCGTTCG+AGG | - | chr3_4:56392783-56392802 | Msa0508420:CDS | 60.0% | |
| GACGCGTTCGAGGACACGAA+TGG | - | chr3_4:56392793-56392812 | Msa0508420:CDS | 60.0% | |
| !! | AGGACAGTGTGGTGGTGGTG+TGG | - | chr3_4:56392916-56392935 | Msa0508420:CDS | 60.0% |
| CGTGTCCTCGAACGCGTCTC+AGG | + | chr3_4:56392791-56392810 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 56390044 | 56393213 | 56390044 | ID=Msa0508420;Name=Msa0508420 |
| chr3_4 | mRNA | 56390044 | 56393213 | 56390044 | ID=Msa0508420-mRNA-1;Parent=Msa0508420;Name=Msa0508420-mRNA-1;_AED=0.00;_eAED=0.00;_QI=244|1|1|1|1|1|3|147|440 |
| chr3_4 | exon | 56390044 | 56390832 | 56390044 | ID=Msa0508420-mRNA-1:exon:12729;Parent=Msa0508420-mRNA-1 |
| chr3_4 | exon | 56391716 | 56392090 | 56391716 | ID=Msa0508420-mRNA-1:exon:12728;Parent=Msa0508420-mRNA-1 |
| chr3_4 | exon | 56392664 | 56393213 | 56392664 | ID=Msa0508420-mRNA-1:exon:12727;Parent=Msa0508420-mRNA-1 |
| chr3_4 | five_prime_UTR | 56392970 | 56393213 | 56392970 | ID=Msa0508420-mRNA-1:five_prime_utr;Parent=Msa0508420-mRNA-1 |
| chr3_4 | CDS | 56392664 | 56392969 | 56392664 | ID=Msa0508420-mRNA-1:cds;Parent=Msa0508420-mRNA-1 |
| chr3_4 | CDS | 56391716 | 56392090 | 56391716 | ID=Msa0508420-mRNA-1:cds;Parent=Msa0508420-mRNA-1 |
| chr3_4 | CDS | 56390191 | 56390832 | 56390191 | ID=Msa0508420-mRNA-1:cds;Parent=Msa0508420-mRNA-1 |
| chr3_4 | three_prime_UTR | 56390044 | 56390190 | 56390044 | ID=Msa0508420-mRNA-1:three_prime_utr;Parent=Msa0508420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
