Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462830 | XP_003600816.2 | 99.093 | 441 | 3 | 1 | 1 | 440 | 1 | 441 | 0.0 | 905 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462830 | G7JAK3 | 99.093 | 441 | 3 | 1 | 1 | 440 | 1 | 441 | 0.0 | 905 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0368910 | Msa0462830 | 0.956714 | 1.536869e-114 | -8.615850e-47 |
| Msa0416200 | Msa0462830 | 0.964446 | 2.454152e-123 | -8.615850e-47 |
| Msa0462830 | Msa0508420 | 0.811288 | 7.545760e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462830 | MtrunA17_Chr3g0112781 | 99.093 | 441 | 3 | 1 | 1 | 440 | 1 | 441 | 0.0 | 905 |
| Msa0462830 | MtrunA17_Chr5g0436191 | 71.136 | 440 | 109 | 6 | 1 | 440 | 1 | 422 | 0.0 | 610 |
| Msa0462830 | MtrunA17_Chr1g0154851 | 52.020 | 396 | 165 | 8 | 1 | 393 | 1 | 374 | 8.02e-143 | 412 |
| Msa0462830 | MtrunA17_Chr3g0141481 | 51.139 | 395 | 172 | 8 | 1 | 393 | 8 | 383 | 8.23e-135 | 392 |
| Msa0462830 | MtrunA17_Chr5g0403841 | 49.351 | 385 | 175 | 8 | 1 | 384 | 10 | 375 | 1.32e-131 | 384 |
| Msa0462830 | MtrunA17_Chr1g0207581 | 43.678 | 435 | 209 | 7 | 5 | 432 | 54 | 459 | 3.11e-123 | 366 |
| Msa0462830 | MtrunA17_Chr1g0152841 | 46.114 | 386 | 173 | 4 | 22 | 385 | 49 | 421 | 3.14e-123 | 366 |
| Msa0462830 | MtrunA17_Chr3g0134521 | 49.196 | 311 | 146 | 2 | 75 | 385 | 93 | 391 | 3.07e-114 | 341 |
| Msa0462830 | MtrunA17_Chr2g0309941 | 43.236 | 377 | 195 | 6 | 14 | 384 | 17 | 380 | 4.12e-107 | 322 |
| Msa0462830 | MtrunA17_Chr1g0176101 | 42.249 | 329 | 160 | 4 | 63 | 387 | 48 | 350 | 1.17e-88 | 274 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0462830 | AT5G05840.1 | 66.359 | 434 | 129 | 8 | 1 | 425 | 1 | 426 | 0.0 | 572 |
| Msa0462830 | AT3G55720.1 | 54.817 | 436 | 180 | 9 | 1 | 425 | 1 | 430 | 2.01e-159 | 457 |
| Msa0462830 | AT5G66740.1 | 51.795 | 390 | 166 | 7 | 1 | 388 | 1 | 370 | 2.50e-140 | 406 |
| Msa0462830 | AT1G75160.1 | 50.864 | 405 | 170 | 7 | 1 | 388 | 3 | 395 | 1.30e-133 | 390 |
| Msa0462830 | AT1G49840.1 | 47.105 | 380 | 187 | 3 | 6 | 385 | 78 | 443 | 1.38e-123 | 368 |
| Msa0462830 | AT3G19540.1 | 50.729 | 343 | 154 | 3 | 43 | 385 | 108 | 435 | 7.61e-122 | 363 |
| Msa0462830 | AT1G27690.1 | 44.675 | 385 | 193 | 7 | 6 | 385 | 41 | 410 | 9.95e-111 | 333 |
| Msa0462830 | AT1G79420.1 | 39.276 | 387 | 214 | 6 | 13 | 384 | 19 | 399 | 2.93e-98 | 301 |
| Msa0462830 | AT5G06610.1 | 38.992 | 377 | 200 | 8 | 14 | 387 | 4 | 353 | 2.14e-84 | 263 |
Find 108 sgRNAs with CRISPR-Local
Find 194 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTAGAGTTGGTGGTTTC+TGG | 0.183311 | 3_3:-62085996 | Msa0462830:CDS |
| CACATTCTGCCATGCTTTCA+TGG | 0.201655 | 3_3:+62086894 | None:intergenic |
| GAGAAGGATAAGAACTTAGA+AGG | 0.270837 | 3_3:+62087065 | None:intergenic |
| ACCTCTTAGACGTTTCTTAC+AGG | 0.271687 | 3_3:-62085886 | Msa0462830:intron |
| ATGATAGGTGAAGGAATTAA+TGG | 0.298124 | 3_3:+62086763 | None:intergenic |
| CAGAAACCGACTGTGTATAC+TGG | 0.308362 | 3_3:-62084747 | Msa0462830:CDS |
| AAACAAAGGTGTCCTTGTTT+AGG | 0.332152 | 3_3:-62084654 | Msa0462830:CDS |
| CCATCTTCTCTATCAAGATT+AGG | 0.337748 | 3_3:+62086976 | None:intergenic |
| GAGGGTCCCACCTATAGTTT+TGG | 0.340591 | 3_3:-62087169 | Msa0462830:five_prime_UTR |
| TGCAATGGGACAAGTGAAAA+TGG | 0.354180 | 3_3:-62086153 | Msa0462830:CDS |
| TGTATACTGGGAAACCAATA+TGG | 0.358913 | 3_3:-62084734 | Msa0462830:CDS |
| CATCTTCTCTATCAAGATTA+GGG | 0.370073 | 3_3:+62086977 | None:intergenic |
| CATGGCAGAATGTGAAGTTT+TGG | 0.371388 | 3_3:-62086885 | Msa0462830:CDS |
| TGTGGAGATGAAAGGGGAAA+TGG | 0.380199 | 3_3:-62086057 | Msa0462830:CDS |
| GCTTCCATGACAGCAGTGTT+TGG | 0.390938 | 3_3:-62086832 | Msa0462830:CDS |
| GTGGAGATGAAAGGGGAAAT+GGG | 0.395257 | 3_3:-62086056 | Msa0462830:CDS |
| TCAGCACCTCAGTATGCATT+GGG | 0.397772 | 3_3:-62084951 | Msa0462830:CDS |
| ATATATATACAAAATCAAAA+AGG | 0.402270 | 3_3:+62084334 | None:intergenic |
| AATACGTTGGTCTTTAATGC+TGG | 0.407727 | 3_3:+62086708 | None:intergenic |
| GATTATGCAGGAAGTTTCAA+TGG | 0.418797 | 3_3:-62086249 | Msa0462830:intron |
| TTGTATTAGTGACTCCATAT+TGG | 0.426427 | 3_3:+62084720 | None:intergenic |
| AAGGTGTCCTTGTTTAGGTT+TGG | 0.429955 | 3_3:-62084649 | Msa0462830:CDS |
| GTTATGGTGTTTAGAGTTGG+TGG | 0.430545 | 3_3:-62086003 | Msa0462830:CDS |
| GAAGCGGAACGAATCTTATA+CGG | 0.436940 | 3_3:+62084445 | None:intergenic |
| AAGAGAGAACAAGAAGAAAC+AGG | 0.447548 | 3_3:-62084511 | Msa0462830:CDS |
| TAAAGTAGCAGCTGTGAACT+TGG | 0.453174 | 3_3:-62084404 | Msa0462830:CDS |
| CGTGTCCTCGAACGCGTCTC+AGG | 0.453618 | 3_3:+62084619 | None:intergenic |
| AGAAGGATAAGAACTTAGAA+GGG | 0.455406 | 3_3:+62087066 | None:intergenic |
| TTCAGCACCTCAGTATGCAT+TGG | 0.461198 | 3_3:-62084952 | Msa0462830:CDS |
| TCCTCCAAACACTGCTGTCA+TGG | 0.465204 | 3_3:+62086828 | None:intergenic |
| TGGTTAAGTGTTTGTAGTTG+AGG | 0.466898 | 3_3:-62084293 | Msa0462830:three_prime_UTR |
| TGAAGAATGTGGAGATGAAA+GGG | 0.471607 | 3_3:-62086064 | Msa0462830:CDS |
| CCTAATCTTGATAGAGAAGA+TGG | 0.475513 | 3_3:-62086976 | Msa0462830:CDS |
| AAGAAACGTCTAAGAGGTCT+AGG | 0.477131 | 3_3:+62085891 | None:intergenic |
| ACATTGATAACCAAAACTAT+AGG | 0.484891 | 3_3:+62087159 | None:intergenic |
| TGCTATTTGAATGCCGTCGA+CGG | 0.491159 | 3_3:+62084687 | None:intergenic |
| AATAAATTAGCTGTTGACCT+TGG | 0.495236 | 3_3:+62084973 | None:intergenic |
| AAGATTAGTGCAGGAAGTGA+TGG | 0.496426 | 3_3:-62085969 | Msa0462830:CDS |
| TCCTTGTTTAGGTTTGGTGA+AGG | 0.498708 | 3_3:-62084643 | Msa0462830:CDS |
| GGACACGAATGGAAGAGGTT+TGG | 0.499414 | 3_3:-62084603 | Msa0462830:CDS |
| GCACTAATAGACCTGTTCTC+TGG | 0.500599 | 3_3:+62084806 | None:intergenic |
| GTGGATAGTATGTATGCAAT+GGG | 0.505137 | 3_3:-62086167 | Msa0462830:CDS |
| ATACGTTGGTCTTTAATGCT+GGG | 0.506311 | 3_3:+62086709 | None:intergenic |
| GAAACAGGACAGTGCGGTGG+TGG | 0.508423 | 3_3:-62084496 | Msa0462830:CDS |
| TTCGAGGACACGAATGGAAG+AGG | 0.510195 | 3_3:-62084608 | Msa0462830:CDS |
| TATGTCGTGTATGCACGCTT+TGG | 0.512725 | 3_3:+62087217 | None:intergenic |
| GTGAAGAATGTGGAGATGAA+AGG | 0.515780 | 3_3:-62086065 | Msa0462830:CDS |
| GGATACTTCAGCCAGAGAAC+AGG | 0.517748 | 3_3:-62084817 | Msa0462830:CDS |
| AATAAGAAAGTTATAAGAGA+AGG | 0.517812 | 3_3:+62087049 | None:intergenic |
| ACCTGTAAGAAACGTCTAAG+AGG | 0.521381 | 3_3:+62085885 | None:intergenic |
| AGAGTTATGGTGTTTAGAGT+TGG | 0.521665 | 3_3:-62086006 | Msa0462830:CDS |
| TCTGGTAACAAGATTAGTGC+AGG | 0.522139 | 3_3:-62085978 | Msa0462830:CDS |
| GGCAGAAGAGACCAGAGTTA+TGG | 0.523632 | 3_3:-62086019 | Msa0462830:CDS |
| TTGTCAGAAGAATTGATGAT+AGG | 0.524340 | 3_3:+62086748 | None:intergenic |
| TTGCTTGGAGACAAACTCCT+TGG | 0.526233 | 3_3:-62085941 | Msa0462830:CDS |
| TTGATAACCAAAACTATAGG+TGG | 0.533720 | 3_3:+62087162 | None:intergenic |
| AAGGACCTGAGACGCGTTCG+AGG | 0.536027 | 3_3:-62084624 | Msa0462830:CDS |
| TGTAACAGGGTCTTGATCCA+AGG | 0.542455 | 3_3:-62084990 | Msa0462830:intron |
| GAAGTGATGGAAAAGTTGCT+TGG | 0.551623 | 3_3:-62085956 | Msa0462830:CDS |
| AACTCTAAACACCATAACTC+TGG | 0.556386 | 3_3:+62086008 | None:intergenic |
| AGTGGATAGTATGTATGCAA+TGG | 0.556770 | 3_3:-62086168 | Msa0462830:CDS |
| GCATTCAAATAGCACATGCC+GGG | 0.559763 | 3_3:-62084678 | Msa0462830:CDS |
| TCCATGACAGCAGTGTTTGG+AGG | 0.559909 | 3_3:-62086829 | Msa0462830:CDS |
| GGCATTCAAATAGCACATGC+CGG | 0.560172 | 3_3:-62084679 | Msa0462830:CDS |
| TGTTCTCTCTTCAAATCACT+AGG | 0.562617 | 3_3:+62084523 | None:intergenic |
| CATCATTCTCATGCTTCTCG+TGG | 0.564670 | 3_3:-62085918 | Msa0462830:CDS |
| GATGATGAAGGTGAAGAATG+TGG | 0.574659 | 3_3:-62086075 | Msa0462830:CDS |
| GAAGAATTGATGATAGGTGA+AGG | 0.574935 | 3_3:+62086754 | None:intergenic |
| GTATACACAGTCGGTTTCTG+AGG | 0.576407 | 3_3:+62084750 | None:intergenic |
| ATATATAATGAAACAGTATG+TGG | 0.583697 | 3_3:-62086222 | Msa0462830:CDS |
| AAATGTTACTTACAATACGT+TGG | 0.589157 | 3_3:+62086695 | None:intergenic |
| TAATAACAAGAAGATGATGA+AGG | 0.589470 | 3_3:-62086087 | Msa0462830:CDS |
| TAATGCTGGGAGTGATGAGT+TGG | 0.592702 | 3_3:+62086722 | None:intergenic |
| AGTAATGTATGAGAGTATGA+AGG | 0.594575 | 3_3:+62087124 | None:intergenic |
| CAGTATGTGGCTGCAGTGGG+AGG | 0.599898 | 3_3:-62086209 | Msa0462830:CDS |
| GATAGTTCGACACACGGTGT+GGG | 0.600130 | 3_3:-62084839 | Msa0462830:CDS |
| ATCAGACCACGTTACAAAGA+GGG | 0.600841 | 3_3:-62087187 | Msa0462830:five_prime_UTR |
| GACGCGTTCGAGGACACGAA+TGG | 0.602321 | 3_3:-62084614 | Msa0462830:CDS |
| AGTACTTATCCTAAAAGAAG+CGG | 0.603376 | 3_3:+62084429 | None:intergenic |
| AGAAAGAGCATTGAATTCAG+TGG | 0.603658 | 3_3:-62086186 | Msa0462830:CDS |
| AGAAACCGACTGTGTATACT+GGG | 0.603974 | 3_3:-62084746 | Msa0462830:CDS |
| GAAACAGTATGTGGCTGCAG+TGG | 0.604588 | 3_3:-62086213 | Msa0462830:CDS |
| ATATAACATTCACTGATACA+TGG | 0.608722 | 3_3:-62084313 | Msa0462830:three_prime_UTR |
| GGTTTCCCAGTATACACAGT+CGG | 0.616697 | 3_3:+62084741 | None:intergenic |
| TTTCTCCCCAATGCATACTG+AGG | 0.616709 | 3_3:+62084945 | None:intergenic |
| AGGTCTATTAGTGCAGCTAG+AGG | 0.617722 | 3_3:-62084797 | Msa0462830:CDS |
| TACTACTAGTGAGAGTGATG+AGG | 0.620206 | 3_3:-62084371 | Msa0462830:CDS |
| AGAGTGGAACCATGAAAGCA+TGG | 0.620499 | 3_3:-62086903 | Msa0462830:CDS |
| GAAGCATGAGAATGATGCCA+AGG | 0.624913 | 3_3:+62085924 | None:intergenic |
| AAACAGTATGTGGCTGCAGT+GGG | 0.627362 | 3_3:-62086212 | Msa0462830:CDS |
| TATCAGACCACGTTACAAAG+AGG | 0.629841 | 3_3:-62087188 | Msa0462830:five_prime_UTR |
| AGGACAGTGCGGTGGTGGTG+TGG | 0.638251 | 3_3:-62084491 | Msa0462830:CDS |
| ATAGTTCGACACACGGTGTG+GGG | 0.638997 | 3_3:-62084838 | Msa0462830:CDS |
| AGATAGTTCGACACACGGTG+TGG | 0.639805 | 3_3:-62084840 | Msa0462830:CDS |
| GAAGAATGTGGAGATGAAAG+GGG | 0.641257 | 3_3:-62086063 | Msa0462830:CDS |
| TCTCTCTTCAAATCACTAGG+AGG | 0.642226 | 3_3:+62084526 | None:intergenic |
| TGATAACCAAAACTATAGGT+GGG | 0.644903 | 3_3:+62087163 | None:intergenic |
| AGCACATGCCGGGAAAACAA+AGG | 0.655287 | 3_3:-62084668 | Msa0462830:CDS |
| TCCTTCACCAAACCTAAACA+AGG | 0.662739 | 3_3:+62084642 | None:intergenic |
| GCTTGAAGTTCCTATACCTG+AGG | 0.677324 | 3_3:-62086941 | Msa0462830:CDS |
| GAAGAAACAGGACAGTGCGG+TGG | 0.680769 | 3_3:-62084499 | Msa0462830:CDS |
| CAAGACTATAGAACCGTCGA+CGG | 0.687874 | 3_3:-62084700 | Msa0462830:CDS |
| CGTAGAGATAGTTCGACACA+CGG | 0.691502 | 3_3:-62084845 | Msa0462830:CDS |
| GTGGGACCCTCTTTGTAACG+TGG | 0.696046 | 3_3:+62087181 | None:intergenic |
| GAGATGAAAGGGGAAATGGG+TGG | 0.699613 | 3_3:-62086053 | Msa0462830:CDS |
| AAACGTCTAAGAGGTCTAGG+TGG | 0.706543 | 3_3:+62085894 | None:intergenic |
| CAGCACCTCAGTATGCATTG+GGG | 0.719861 | 3_3:-62084950 | Msa0462830:CDS |
| CAAGAAGAAACAGGACAGTG+CGG | 0.758523 | 3_3:-62084502 | Msa0462830:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATACAAAATCAAAA+AGG | + | chr3_3:62087124-62087143 | None:intergenic | 10.0% |
| !!! | CTTATTATTCTTAAATTTTG+TGG | - | chr3_3:62084423-62084442 | Msa0462830:CDS | 15.0% |
| !!! | AATATACTACTTTTTACATT+TGG | - | chr3_3:62084901-62084920 | Msa0462830:CDS | 15.0% |
| !!! | AAAGAAAAAACAAATGATTT+TGG | + | chr3_3:62085614-62085633 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTTCTTTCTTTAA+AGG | - | chr3_3:62085620-62085639 | Msa0462830:intron | 15.0% |
| !!! | TTGTTTTTTCTTTCTTTAAA+GGG | - | chr3_3:62085621-62085640 | Msa0462830:intron | 15.0% |
| !! | TAAGAAAGAAAATTAAGATA+TGG | + | chr3_3:62086251-62086270 | None:intergenic | 15.0% |
| !!! | GAAGTTGATTTTAATATTAA+AGG | - | chr3_3:62086884-62086903 | Msa0462830:CDS | 15.0% |
| !! | AATAAGAAAGTTATAAGAGA+AGG | + | chr3_3:62084409-62084428 | None:intergenic | 20.0% |
| !! | TTTACAAAAATTGTTCGTAT+TGG | - | chr3_3:62084946-62084965 | Msa0462830:CDS | 20.0% |
| !! | ATATATAATGAAACAGTATG+TGG | - | chr3_3:62085233-62085252 | Msa0462830:intron | 20.0% |
| !! | ATGATTAAAATCCATAAAGT+TGG | + | chr3_3:62085846-62085865 | None:intergenic | 20.0% |
| !! | TTGAATCCAATTTGTAAAAT+CGG | - | chr3_3:62085941-62085960 | Msa0462830:CDS | 20.0% |
| !!! | AAGGGAAAATGTATTTTTAT+AGG | + | chr3_3:62086088-62086107 | None:intergenic | 20.0% |
| !!! | TTTGACTTTAACCTTTAAAA+GGG | + | chr3_3:62086189-62086208 | None:intergenic | 20.0% |
| !!! | TTTTGACTTTAACCTTTAAA+AGG | + | chr3_3:62086190-62086209 | None:intergenic | 20.0% |
| !!! | AAAACAATGATTTTTGTAAC+AGG | - | chr3_3:62086451-62086470 | Msa0462830:intron | 20.0% |
| !!! | AAACAATGATTTTTGTAACA+GGG | - | chr3_3:62086452-62086471 | Msa0462830:intron | 20.0% |
| !! | ATATACAAAATCAAAAAGGA+TGG | + | chr3_3:62087120-62087139 | None:intergenic | 20.0% |
| !! | AAAAAACAAGTTAAAAGTGA+AGG | + | chr3_3:62087205-62087224 | None:intergenic | 20.0% |
| !!! | TTTTAACTTGTTTTTTTCGT+TGG | - | chr3_3:62087209-62087228 | Msa0462830:five_prime_UTR | 20.0% |
| !! | AAAGTGATGAACAAAAATAA+AGG | - | chr3_3:62087232-62087251 | Msa0462830:five_prime_UTR | 20.0% |
| !! | ACATTGATAACCAAAACTAT+AGG | + | chr3_3:62084299-62084318 | None:intergenic | 25.0% |
| !! | AAATGTTACTTACAATACGT+TGG | + | chr3_3:62084763-62084782 | None:intergenic | 25.0% |
| !!! | AAGAAAAGAGAGTGTTTTTT+TGG | + | chr3_3:62084787-62084806 | None:intergenic | 25.0% |
| !! | AAAAAAACACTCTCTTTTCT+TGG | - | chr3_3:62084786-62084805 | Msa0462830:CDS | 25.0% |
| !!! | CCATTTTAGTCTTTATTTGT+AGG | + | chr3_3:62085010-62085029 | None:intergenic | 25.0% |
| ! | CCTACAAATAAAGACTAAAA+TGG | - | chr3_3:62085007-62085026 | Msa0462830:intron | 25.0% |
| !!! | AATTTAGCAGTTTTTGGTTT+TGG | + | chr3_3:62085096-62085115 | None:intergenic | 25.0% |
| ! | CTGCATAATCATAAAAAACA+TGG | + | chr3_3:62085196-62085215 | None:intergenic | 25.0% |
| !!! | CATGTTTTTTATGATTATGC+AGG | - | chr3_3:62085194-62085213 | Msa0462830:intron | 25.0% |
| ! | TAATAACAAGAAGATGATGA+AGG | - | chr3_3:62085368-62085387 | Msa0462830:intron | 25.0% |
| ! | GATTAGTACTAGTACTATAT+AGG | - | chr3_3:62085738-62085757 | Msa0462830:intron | 25.0% |
| ! | CAAATTGGATTCAAAATATC+AGG | + | chr3_3:62085935-62085954 | None:intergenic | 25.0% |
| ! | TTATTAAATGTTAAACCTCC+TGG | + | chr3_3:62086125-62086144 | None:intergenic | 25.0% |
| !! | CAATTTTTGTCTTAAGACTA+TGG | + | chr3_3:62086327-62086346 | None:intergenic | 25.0% |
| ! | AAGACAAAAATTGACCTATA+TGG | - | chr3_3:62086334-62086353 | Msa0462830:intron | 25.0% |
| ! | ATATAACATTCACTGATACA+TGG | - | chr3_3:62087142-62087161 | Msa0462830:five_prime_UTR | 25.0% |
| TGATAACCAAAACTATAGGT+GGG | + | chr3_3:62084295-62084314 | None:intergenic | 30.0% | |
| ! | TTGATAACCAAAACTATAGG+TGG | + | chr3_3:62084296-62084315 | None:intergenic | 30.0% |
| ! | AGTAATGTATGAGAGTATGA+AGG | + | chr3_3:62084334-62084353 | None:intergenic | 30.0% |
| AGAAGGATAAGAACTTAGAA+GGG | + | chr3_3:62084392-62084411 | None:intergenic | 30.0% | |
| CATCTTCTCTATCAAGATTA+GGG | + | chr3_3:62084481-62084500 | None:intergenic | 30.0% | |
| GTAAAAATTTCCTCAGGTAT+AGG | + | chr3_3:62084527-62084546 | None:intergenic | 30.0% | |
| TTCTGTGTAAAAATTTCCTC+AGG | + | chr3_3:62084533-62084552 | None:intergenic | 30.0% | |
| ! | GAAATTTTTACACAGAAGAG+TGG | - | chr3_3:62084536-62084555 | Msa0462830:CDS | 30.0% |
| ATGATAGGTGAAGGAATTAA+TGG | + | chr3_3:62084695-62084714 | None:intergenic | 30.0% | |
| ! | TTGTCAGAAGAATTGATGAT+AGG | + | chr3_3:62084710-62084729 | None:intergenic | 30.0% |
| ! | CTAGCAAATTTAGCAGTTTT+TGG | + | chr3_3:62085102-62085121 | None:intergenic | 30.0% |
| TTTGTTTGTATGCAAAAGAG+TGG | - | chr3_3:62085700-62085719 | Msa0462830:intron | 30.0% | |
| TAGTACTAGTACTATATAGG+TGG | - | chr3_3:62085741-62085760 | Msa0462830:intron | 30.0% | |
| AGTACTAGTACTATATAGGT+GGG | - | chr3_3:62085742-62085761 | Msa0462830:intron | 30.0% | |
| ATCATTCTACTTGAGAACTT+TGG | - | chr3_3:62085776-62085795 | Msa0462830:intron | 30.0% | |
| GTATAGTCACAAATGATGTT+AGG | + | chr3_3:62085824-62085843 | None:intergenic | 30.0% | |
| TTGTGACTATACCAACTTTA+TGG | - | chr3_3:62085832-62085851 | Msa0462830:intron | 30.0% | |
| ! | CACATTCCGATTTTACAAAT+TGG | + | chr3_3:62085950-62085969 | None:intergenic | 30.0% |
| ! | TTTTATAGGCAAGCTAAGTT+AGG | + | chr3_3:62086074-62086093 | None:intergenic | 30.0% |
| ! | GGAATTTTCTTCCCTTTTAA+AGG | - | chr3_3:62086175-62086194 | Msa0462830:CDS | 30.0% |
| ! | AAGAATAAACAGCTTTAGCA+TGG | + | chr3_3:62086294-62086313 | None:intergenic | 30.0% |
| AATAAATTAGCTGTTGACCT+TGG | + | chr3_3:62086485-62086504 | None:intergenic | 30.0% | |
| TTGTATTAGTGACTCCATAT+TGG | + | chr3_3:62086738-62086757 | None:intergenic | 30.0% | |
| AGTACTTATCCTAAAAGAAG+CGG | + | chr3_3:62087029-62087048 | None:intergenic | 30.0% | |
| GAGAAGGATAAGAACTTAGA+AGG | + | chr3_3:62084393-62084412 | None:intergenic | 35.0% | |
| CCATCTTCTCTATCAAGATT+AGG | + | chr3_3:62084482-62084501 | None:intergenic | 35.0% | |
| CCTAATCTTGATAGAGAAGA+TGG | - | chr3_3:62084479-62084498 | Msa0462830:CDS | 35.0% | |
| ! | TCAGAGATTCAGCTTTTGTT+AGG | - | chr3_3:62084656-62084675 | Msa0462830:CDS | 35.0% |
| ! | GAAGAATTGATGATAGGTGA+AGG | + | chr3_3:62084704-62084723 | None:intergenic | 35.0% |
| !! | ATACGTTGGTCTTTAATGCT+GGG | + | chr3_3:62084749-62084768 | None:intergenic | 35.0% |
| !! | AATACGTTGGTCTTTAATGC+TGG | + | chr3_3:62084750-62084769 | None:intergenic | 35.0% |
| !!! | TGGTCATTGGTGTTTTGATT+CGG | + | chr3_3:62085076-62085095 | None:intergenic | 35.0% |
| !!! | CAGTTTTTGGTTTTGGTCAT+TGG | + | chr3_3:62085089-62085108 | None:intergenic | 35.0% |
| GATTATGCAGGAAGTTTCAA+TGG | - | chr3_3:62085206-62085225 | Msa0462830:intron | 35.0% | |
| !! | AGAAAGAGCATTGAATTCAG+TGG | - | chr3_3:62085269-62085288 | Msa0462830:intron | 35.0% |
| AGTGGATAGTATGTATGCAA+TGG | - | chr3_3:62085287-62085306 | Msa0462830:intron | 35.0% | |
| GTGGATAGTATGTATGCAAT+GGG | - | chr3_3:62085288-62085307 | Msa0462830:intron | 35.0% | |
| ! | CAACTTCAGAGTTTTCTTCA+GGG | - | chr3_3:62085325-62085344 | Msa0462830:intron | 35.0% |
| ! | AACTTCAGAGTTTTCTTCAG+GGG | - | chr3_3:62085326-62085345 | Msa0462830:intron | 35.0% |
| TGAAGAATGTGGAGATGAAA+GGG | - | chr3_3:62085391-62085410 | Msa0462830:intron | 35.0% | |
| AACTCTAAACACCATAACTC+TGG | + | chr3_3:62085450-62085469 | None:intergenic | 35.0% | |
| ! | AGAGTTATGGTGTTTAGAGT+TGG | - | chr3_3:62085449-62085468 | Msa0462830:intron | 35.0% |
| GTACTAGTACTATATAGGTG+GGG | - | chr3_3:62085743-62085762 | Msa0462830:intron | 35.0% | |
| CTTTAGCATGGACAAAAAAC+AGG | + | chr3_3:62086282-62086301 | None:intergenic | 35.0% | |
| TGTCTTAAGACTATGGTTAG+AGG | + | chr3_3:62086320-62086339 | None:intergenic | 35.0% | |
| GTATGTGTATTGCACCATAT+AGG | + | chr3_3:62086351-62086370 | None:intergenic | 35.0% | |
| TGTATACTGGGAAACCAATA+TGG | - | chr3_3:62086721-62086740 | Msa0462830:CDS | 35.0% | |
| !! | AAACAAAGGTGTCCTTGTTT+AGG | - | chr3_3:62086801-62086820 | Msa0462830:CDS | 35.0% |
| TGTTCTCTCTTCAAATCACT+AGG | + | chr3_3:62086935-62086954 | None:intergenic | 35.0% | |
| AAGAGAGAACAAGAAGAAAC+AGG | - | chr3_3:62086944-62086963 | Msa0462830:CDS | 35.0% | |
| TGGTTAAGTGTTTGTAGTTG+AGG | - | chr3_3:62087162-62087181 | Msa0462830:five_prime_UTR | 35.0% | |
| TATCAGACCACGTTACAAAG+AGG | - | chr3_3:62084267-62084286 | Msa0462830:three_prime_UTR | 40.0% | |
| ATCAGACCACGTTACAAAGA+GGG | - | chr3_3:62084268-62084287 | Msa0462830:three_prime_UTR | 40.0% | |
| ! | CATGGCAGAATGTGAAGTTT+TGG | - | chr3_3:62084570-62084589 | Msa0462830:CDS | 40.0% |
| !! | CAGCTTTTGTTAGGTGTTGT+AGG | - | chr3_3:62084665-62084684 | Msa0462830:CDS | 40.0% |
| TGCAATGGGACAAGTGAAAA+TGG | - | chr3_3:62085302-62085321 | Msa0462830:intron | 40.0% | |
| ! | GCAACTTCAGAGTTTTCTTC+AGG | - | chr3_3:62085324-62085343 | Msa0462830:intron | 40.0% |
| ! | AGAGTTTTCTTCAGGGGAAA+GGG | - | chr3_3:62085332-62085351 | Msa0462830:intron | 40.0% |
| GATGATGAAGGTGAAGAATG+TGG | - | chr3_3:62085380-62085399 | Msa0462830:intron | 40.0% | |
| GTGAAGAATGTGGAGATGAA+AGG | - | chr3_3:62085390-62085409 | Msa0462830:intron | 40.0% | |
| GAAGAATGTGGAGATGAAAG+GGG | - | chr3_3:62085392-62085411 | Msa0462830:intron | 40.0% | |
| !!! | AAATGGGTGGTTTTGTGGTA+TGG | - | chr3_3:62085415-62085434 | Msa0462830:intron | 40.0% |
| ! | GTTATGGTGTTTAGAGTTGG+TGG | - | chr3_3:62085452-62085471 | Msa0462830:intron | 40.0% |
| !! | TGTTTAGAGTTGGTGGTTTC+TGG | - | chr3_3:62085459-62085478 | Msa0462830:intron | 40.0% |
| TCTGGTAACAAGATTAGTGC+AGG | - | chr3_3:62085477-62085496 | Msa0462830:intron | 40.0% | |
| AAGATTAGTGCAGGAAGTGA+TGG | - | chr3_3:62085486-62085505 | Msa0462830:intron | 40.0% | |
| ! | GAAGTGATGGAAAAGTTGCT+TGG | - | chr3_3:62085499-62085518 | Msa0462830:intron | 40.0% |
| AAGAAACGTCTAAGAGGTCT+AGG | + | chr3_3:62085567-62085586 | None:intergenic | 40.0% | |
| ACCTCTTAGACGTTTCTTAC+AGG | - | chr3_3:62085569-62085588 | Msa0462830:intron | 40.0% | |
| ACCTGTAAGAAACGTCTAAG+AGG | + | chr3_3:62085573-62085592 | None:intergenic | 40.0% | |
| CTGAAATCAGACCGTTCAAA+TGG | + | chr3_3:62085893-62085912 | None:intergenic | 40.0% | |
| TGCATTCTACTCTAGACAGT+TGG | + | chr3_3:62086154-62086173 | None:intergenic | 40.0% | |
| ! | AACTGTCTAGAGTAGAATGC+AGG | - | chr3_3:62086153-62086172 | Msa0462830:CDS | 40.0% |
| ! | ACTGTCTAGAGTAGAATGCA+GGG | - | chr3_3:62086154-62086173 | Msa0462830:CDS | 40.0% |
| AGAAACCGACTGTGTATACT+GGG | - | chr3_3:62086709-62086728 | Msa0462830:CDS | 40.0% | |
| ! | AAGGTGTCCTTGTTTAGGTT+TGG | - | chr3_3:62086806-62086825 | Msa0462830:CDS | 40.0% |
| !! | TCCTTGTTTAGGTTTGGTGA+AGG | - | chr3_3:62086812-62086831 | Msa0462830:CDS | 40.0% |
| TCCTTCACCAAACCTAAACA+AGG | + | chr3_3:62086816-62086835 | None:intergenic | 40.0% | |
| TCTCTCTTCAAATCACTAGG+AGG | + | chr3_3:62086932-62086951 | None:intergenic | 40.0% | |
| GAAGCGGAACGAATCTTATA+CGG | + | chr3_3:62087013-62087032 | None:intergenic | 40.0% | |
| ! | AGATTCGTTCCGCTTCTTTT+AGG | - | chr3_3:62087017-62087036 | Msa0462830:five_prime_UTR | 40.0% |
| TAAAGTAGCAGCTGTGAACT+TGG | - | chr3_3:62087051-62087070 | Msa0462830:five_prime_UTR | 40.0% | |
| TACTACTAGTGAGAGTGATG+AGG | - | chr3_3:62087084-62087103 | Msa0462830:five_prime_UTR | 40.0% | |
| TATGTCGTGTATGCACGCTT+TGG | + | chr3_3:62084241-62084260 | None:intergenic | 45.0% | |
| GCTTGAAGTTCCTATACCTG+AGG | - | chr3_3:62084514-62084533 | Msa0462830:CDS | 45.0% | |
| AGAGTGGAACCATGAAAGCA+TGG | - | chr3_3:62084552-62084571 | Msa0462830:CDS | 45.0% | |
| CACATTCTGCCATGCTTTCA+TGG | + | chr3_3:62084564-62084583 | None:intergenic | 45.0% | |
| TAATGCTGGGAGTGATGAGT+TGG | + | chr3_3:62084736-62084755 | None:intergenic | 45.0% | |
| AAACAGTATGTGGCTGCAGT+GGG | - | chr3_3:62085243-62085262 | Msa0462830:intron | 45.0% | |
| ! | CAGAGTTTTCTTCAGGGGAA+AGG | - | chr3_3:62085331-62085350 | Msa0462830:intron | 45.0% |
| ! | GAGTTTTCTTCAGGGGAAAG+GGG | - | chr3_3:62085333-62085352 | Msa0462830:intron | 45.0% |
| TGTGGAGATGAAAGGGGAAA+TGG | - | chr3_3:62085398-62085417 | Msa0462830:intron | 45.0% | |
| GTGGAGATGAAAGGGGAAAT+GGG | - | chr3_3:62085399-62085418 | Msa0462830:intron | 45.0% | |
| TTGCTTGGAGACAAACTCCT+TGG | - | chr3_3:62085514-62085533 | Msa0462830:intron | 45.0% | |
| GAAGCATGAGAATGATGCCA+AGG | + | chr3_3:62085534-62085553 | None:intergenic | 45.0% | |
| CATCATTCTCATGCTTCTCG+TGG | - | chr3_3:62085537-62085556 | Msa0462830:intron | 45.0% | |
| AAACGTCTAAGAGGTCTAGG+TGG | + | chr3_3:62085564-62085583 | None:intergenic | 45.0% | |
| CCACAGTCAAGCCATTTGAA+CGG | - | chr3_3:62085879-62085898 | Msa0462830:intron | 45.0% | |
| TGAAACCATCGGACCAAGAT+GGG | + | chr3_3:62085979-62085998 | None:intergenic | 45.0% | |
| TTGAAACCATCGGACCAAGA+TGG | + | chr3_3:62085980-62085999 | None:intergenic | 45.0% | |
| CCTCATGCGATTGAAACCAT+CGG | + | chr3_3:62085990-62086009 | None:intergenic | 45.0% | |
| CGATGGTTTCAATCGCATGA+GGG | - | chr3_3:62085988-62086007 | Msa0462830:CDS | 45.0% | |
| TTGTCGCATTCGCACAATTC+AGG | + | chr3_3:62086025-62086044 | None:intergenic | 45.0% | |
| AATGTTAAACCTCCTGGCTC+TGG | + | chr3_3:62086119-62086138 | None:intergenic | 45.0% | |
| TGTAACAGGGTCTTGATCCA+AGG | - | chr3_3:62086465-62086484 | Msa0462830:intron | 45.0% | |
| TTCAGCACCTCAGTATGCAT+TGG | - | chr3_3:62086503-62086522 | Msa0462830:intron | 45.0% | |
| TCAGCACCTCAGTATGCATT+GGG | - | chr3_3:62086504-62086523 | Msa0462830:intron | 45.0% | |
| TTTCTCCCCAATGCATACTG+AGG | + | chr3_3:62086513-62086532 | None:intergenic | 45.0% | |
| CGTAGAGATAGTTCGACACA+CGG | - | chr3_3:62086610-62086629 | Msa0462830:intron | 45.0% | |
| GCACTAATAGACCTGTTCTC+TGG | + | chr3_3:62086652-62086671 | None:intergenic | 45.0% | |
| AGGTCTATTAGTGCAGCTAG+AGG | - | chr3_3:62086658-62086677 | Msa0462830:intron | 45.0% | |
| ! | GTATACACAGTCGGTTTCTG+AGG | + | chr3_3:62086708-62086727 | None:intergenic | 45.0% |
| CAGAAACCGACTGTGTATAC+TGG | - | chr3_3:62086708-62086727 | Msa0462830:CDS | 45.0% | |
| GGTTTCCCAGTATACACAGT+CGG | + | chr3_3:62086717-62086736 | None:intergenic | 45.0% | |
| CAAGACTATAGAACCGTCGA+CGG | - | chr3_3:62086755-62086774 | Msa0462830:CDS | 45.0% | |
| ! | TGCTATTTGAATGCCGTCGA+CGG | + | chr3_3:62086771-62086790 | None:intergenic | 45.0% |
| GGCATTCAAATAGCACATGC+CGG | - | chr3_3:62086776-62086795 | Msa0462830:CDS | 45.0% | |
| GCATTCAAATAGCACATGCC+GGG | - | chr3_3:62086777-62086796 | Msa0462830:CDS | 45.0% | |
| !!! | CAAGGACACCTTTGTTTTCC+CGG | + | chr3_3:62086798-62086817 | None:intergenic | 45.0% |
| CAAGAAGAAACAGGACAGTG+CGG | - | chr3_3:62086953-62086972 | Msa0462830:CDS | 45.0% | |
| ! | GAGGGTCCCACCTATAGTTT+TGG | - | chr3_3:62084286-62084305 | Msa0462830:three_prime_UTR | 50.0% |
| ! | GCTTTTGCTTCTGCTGCGTT+TGG | + | chr3_3:62084602-62084621 | None:intergenic | 50.0% |
| GCTTCCATGACAGCAGTGTT+TGG | - | chr3_3:62084623-62084642 | Msa0462830:CDS | 50.0% | |
| TCCATGACAGCAGTGTTTGG+AGG | - | chr3_3:62084626-62084645 | Msa0462830:CDS | 50.0% | |
| TCCTCCAAACACTGCTGTCA+TGG | + | chr3_3:62084630-62084649 | None:intergenic | 50.0% | |
| GAAACAGTATGTGGCTGCAG+TGG | - | chr3_3:62085242-62085261 | Msa0462830:intron | 50.0% | |
| GAGATGAAAGGGGAAATGGG+TGG | - | chr3_3:62085402-62085421 | Msa0462830:intron | 50.0% | |
| !! | AGGGGAAATGGGTGGTTTTG+TGG | - | chr3_3:62085410-62085429 | Msa0462830:intron | 50.0% |
| GGCAGAAGAGACCAGAGTTA+TGG | - | chr3_3:62085436-62085455 | Msa0462830:intron | 50.0% | |
| CCGTTCAAATGGCTTGACTG+TGG | + | chr3_3:62085882-62085901 | None:intergenic | 50.0% | |
| GAATGTGAACCCTCCCATCT+TGG | - | chr3_3:62085963-62085982 | Msa0462830:CDS | 50.0% | |
| CCGATGGTTTCAATCGCATG+AGG | - | chr3_3:62085987-62086006 | Msa0462830:CDS | 50.0% | |
| CAGCACCTCAGTATGCATTG+GGG | - | chr3_3:62086505-62086524 | Msa0462830:intron | 50.0% | |
| AGATAGTTCGACACACGGTG+TGG | - | chr3_3:62086615-62086634 | Msa0462830:intron | 50.0% | |
| GATAGTTCGACACACGGTGT+GGG | - | chr3_3:62086616-62086635 | Msa0462830:intron | 50.0% | |
| ATAGTTCGACACACGGTGTG+GGG | - | chr3_3:62086617-62086636 | Msa0462830:intron | 50.0% | |
| GGATACTTCAGCCAGAGAAC+AGG | - | chr3_3:62086638-62086657 | Msa0462830:intron | 50.0% | |
| AGCACATGCCGGGAAAACAA+AGG | - | chr3_3:62086787-62086806 | Msa0462830:CDS | 50.0% | |
| TTCGAGGACACGAATGGAAG+AGG | - | chr3_3:62086847-62086866 | Msa0462830:CDS | 50.0% | |
| GGACACGAATGGAAGAGGTT+TGG | - | chr3_3:62086852-62086871 | Msa0462830:CDS | 50.0% | |
| GTGGGACCCTCTTTGTAACG+TGG | + | chr3_3:62084277-62084296 | None:intergenic | 55.0% | |
| ACCATCGGACCAAGATGGGA+GGG | + | chr3_3:62085975-62085994 | None:intergenic | 55.0% | |
| AACCATCGGACCAAGATGGG+AGG | + | chr3_3:62085976-62085995 | None:intergenic | 55.0% | |
| !! | CTGGCTCTGGAGTGGCTTAA+GGG | + | chr3_3:62086106-62086125 | None:intergenic | 55.0% |
| !! | TAAACCTCCTGGCTCTGGAG+TGG | + | chr3_3:62086114-62086133 | None:intergenic | 55.0% |
| GAAGAAACAGGACAGTGCGG+TGG | - | chr3_3:62086956-62086975 | Msa0462830:CDS | 55.0% | |
| CAGTATGTGGCTGCAGTGGG+AGG | - | chr3_3:62085246-62085265 | Msa0462830:intron | 60.0% | |
| ACCCTCCCATCTTGGTCCGA+TGG | - | chr3_3:62085971-62085990 | Msa0462830:CDS | 60.0% | |
| !! | CCTGGCTCTGGAGTGGCTTA+AGG | + | chr3_3:62086107-62086126 | None:intergenic | 60.0% |
| CCTTAAGCCACTCCAGAGCC+AGG | - | chr3_3:62086104-62086123 | Msa0462830:CDS | 60.0% | |
| TAAGCCACTCCAGAGCCAGG+AGG | - | chr3_3:62086107-62086126 | Msa0462830:CDS | 60.0% | |
| AAGGACCTGAGACGCGTTCG+AGG | - | chr3_3:62086831-62086850 | Msa0462830:CDS | 60.0% | |
| GACGCGTTCGAGGACACGAA+TGG | - | chr3_3:62086841-62086860 | Msa0462830:CDS | 60.0% | |
| GAAACAGGACAGTGCGGTGG+TGG | - | chr3_3:62086959-62086978 | Msa0462830:CDS | 60.0% | |
| CGTGTCCTCGAACGCGTCTC+AGG | + | chr3_3:62086839-62086858 | None:intergenic | 65.0% | |
| ! | AGGACAGTGCGGTGGTGGTG+TGG | - | chr3_3:62086964-62086983 | Msa0462830:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 62084219 | 62087258 | 62084219 | ID=Msa0462830;Name=Msa0462830 |
| chr3_3 | mRNA | 62084219 | 62087258 | 62084219 | ID=Msa0462830-mRNA-1;Parent=Msa0462830;Name=Msa0462830-mRNA-1;_AED=0.01;_eAED=0.01;_QI=245|1|1|1|1|1|3|144|440 |
| chr3_3 | exon | 62084219 | 62085004 | 62084219 | ID=Msa0462830-mRNA-1:exon:13222;Parent=Msa0462830-mRNA-1 |
| chr3_3 | exon | 62085887 | 62086261 | 62085887 | ID=Msa0462830-mRNA-1:exon:13221;Parent=Msa0462830-mRNA-1 |
| chr3_3 | exon | 62086708 | 62087258 | 62086708 | ID=Msa0462830-mRNA-1:exon:13220;Parent=Msa0462830-mRNA-1 |
| chr3_3 | five_prime_UTR | 62087014 | 62087258 | 62087014 | ID=Msa0462830-mRNA-1:five_prime_utr;Parent=Msa0462830-mRNA-1 |
| chr3_3 | CDS | 62086708 | 62087013 | 62086708 | ID=Msa0462830-mRNA-1:cds;Parent=Msa0462830-mRNA-1 |
| chr3_3 | CDS | 62085887 | 62086261 | 62085887 | ID=Msa0462830-mRNA-1:cds;Parent=Msa0462830-mRNA-1 |
| chr3_3 | CDS | 62084363 | 62085004 | 62084363 | ID=Msa0462830-mRNA-1:cds;Parent=Msa0462830-mRNA-1 |
| chr3_3 | three_prime_UTR | 62084219 | 62084362 | 62084219 | ID=Msa0462830-mRNA-1:three_prime_utr;Parent=Msa0462830-mRNA-1 |
| Gene Sequence |
| Protein sequence |
