AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0371430

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371430 MtrunA17_Chr3g0118201 92.793 111 8 0 1 111 1 111 2.06e-59 183
Msa0371430 MtrunA17_Chr3g0121231 44.595 74 37 1 41 114 32 101 8.25e-13 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 131 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGAATATTAAGCGTGTATT+TGG 0.217650 3_1:+69583955 Msa0371430:CDS
TAGCGATGAAGAAAAGTTTA+TGG 0.222754 3_1:-69582942 None:intergenic
TGTTCTATCTGTACATTTCC+TGG 0.235239 3_1:+69584696 Msa0371430:three_prime_UTR
ATAAGGAAAAGAGAATTATT+AGG 0.236586 3_1:+69583932 Msa0371430:CDS
TAAAGGAGTTAAGGAGTTAA+AGG 0.250711 3_1:-69585059 None:intergenic
ACTGGTTTCACAATGGAAAA+TGG 0.258659 3_1:-69584247 None:intergenic
AAAGTCACGGGTTCAATTCC+TGG 0.302424 3_1:+69584857 Msa0371430:three_prime_UTR
AGTGAGGAGGTTGTTGAGAT+TGG 0.306031 3_1:-69583221 None:intergenic
ATGTTTAGGTATAGTCATAT+TGG 0.307048 3_1:+69584391 Msa0371430:three_prime_UTR
CAAACCAAGTAAGGGTTTAA+AGG 0.310715 3_1:-69585076 None:intergenic
TAGAACAATAAGAAAATGTT+TGG 0.315660 3_1:-69584680 None:intergenic
CATAGTGTAGGTCATTAAAA+TGG 0.316912 3_1:-69585198 None:intergenic
TTCACCATGTTTCTCGTGAA+TGG 0.342793 3_1:-69584573 None:intergenic
CGGAGATGACGGTGGGGAAG+GGG 0.343868 3_1:-69583164 None:intergenic
GTATATAAAATTAATTTGAT+TGG 0.345959 3_1:+69584014 Msa0371430:three_prime_UTR
TGTTTAGGTATAGTCATATT+GGG 0.349593 3_1:+69584392 Msa0371430:three_prime_UTR
TGACAAATGTTAGTATGTTA+AGG 0.350385 3_1:+69584792 Msa0371430:three_prime_UTR
TCCTGGCTGAAGAATTTCAT+TGG 0.361277 3_1:+69584713 Msa0371430:three_prime_UTR
AAGGTCCAGGGTTCGAATCT+TGG 0.361593 3_1:-69585040 None:intergenic
AGAACAATAAGAAAATGTTT+GGG 0.363225 3_1:-69584679 None:intergenic
CGGTGGGGAAGGGGAGGAAG+AGG 0.363507 3_1:-69583155 None:intergenic
GTAAGGGTTTAAAGGAGTTA+AGG 0.366678 3_1:-69585068 None:intergenic
ATCTCAATGCAAACCAAGTA+AGG 0.371484 3_1:-69585085 None:intergenic
CCAATTCTTCGCATCCTCAT+TGG 0.380648 3_1:+69583095 Msa0371430:CDS
TAAGGAAAAGAGAATTATTA+GGG 0.381156 3_1:+69583933 Msa0371430:CDS
AATGTTTGGGGTTAACTTGT+TGG 0.382088 3_1:-69584666 None:intergenic
CCAATGAGGATGCGAAGAAT+TGG 0.384540 3_1:-69583095 None:intergenic
TGTCTCTGCTTTCCACAATA+TGG 0.385211 3_1:+69584466 Msa0371430:three_prime_UTR
GTCGCTTAAATCACATTTGC+CGG 0.385494 3_1:+69584216 Msa0371430:three_prime_UTR
CGGGAAGGGGTTCCACCCTT+TGG 0.387903 3_1:-69584926 None:intergenic
AATCAACTAACACGTGTCTT+AGG 0.392250 3_1:+69582908 Msa0371430:five_prime_UTR
AGCGATGAAGAAAAGTTTAT+GGG 0.395276 3_1:-69582941 None:intergenic
ACTAAAGCTCCTGCATATAC+AGG 0.402952 3_1:-69584952 None:intergenic
TGGGGAAGGGGAGGAAGAGG+TGG 0.403774 3_1:-69583152 None:intergenic
AAATTTAACTGCCTTTGATA+AGG 0.404195 3_1:+69583915 Msa0371430:CDS
ACCCGCGGATTCACTTTCTC+TGG 0.404945 3_1:+69583265 Msa0371430:CDS
CCTGGCTGAAGAATTTCATT+GGG 0.409935 3_1:+69584714 Msa0371430:three_prime_UTR
GTTGAGATTGGAGGCGGTAG+TGG 0.410912 3_1:-69583209 None:intergenic
ACAAGGCTGTTCATCCTACT+TGG 0.410918 3_1:+69584745 Msa0371430:three_prime_UTR
GAAGGGGTGTGATTCATGTT+TGG 0.411379 3_1:+69584047 Msa0371430:three_prime_UTR
AACTCCTTTAAACCCTTACT+TGG 0.414332 3_1:+69585072 Msa0371430:three_prime_UTR
GGCGGTAGTGGTGGCGTTTG+CGG 0.421186 3_1:-69583197 None:intergenic
GACAAATGTTAGTATGTTAA+GGG 0.424950 3_1:+69584793 Msa0371430:three_prime_UTR
AGTGGTGGCGTTTGCGGCGG+CGG 0.425892 3_1:-69583191 None:intergenic
TACAAAACCTCTCCTTCAAT+TGG 0.427498 3_1:-69584362 None:intergenic
AGGTGGGAATGTTGAGTTGT+TGG 0.429390 3_1:+69583881 Msa0371430:CDS
TTACACAAGAGGTTGTTTCC+AGG 0.431582 3_1:-69584875 None:intergenic
TCGGAGATGACGGTGGGGAA+GGG 0.440083 3_1:-69583165 None:intergenic
AGATGACGGTGGGGAAGGGG+AGG 0.442459 3_1:-69583161 None:intergenic
ATGTTTGGATGTCTTTACTT+TGG 0.448567 3_1:+69584062 Msa0371430:three_prime_UTR
TCACCATGTTTCTCGTGAAT+GGG 0.450075 3_1:-69584572 None:intergenic
ATCGGAGATGACGGTGGGGA+AGG 0.452043 3_1:-69583166 None:intergenic
CATATACAGGGTACGGGAAG+GGG 0.461663 3_1:-69584939 None:intergenic
GCGTTTGCGGCGGCGGAGAT+CGG 0.463231 3_1:-69583184 None:intergenic
AGTTAAGGAGTTAAAGGTCC+AGG 0.468744 3_1:-69585053 None:intergenic
AATTTCAGGTCGCGCGTATG+AGG 0.469923 3_1:+69583547 Msa0371430:intron
TCACATGAAATGAAAGCCTC+TGG 0.472993 3_1:-69584322 None:intergenic
TTGATTGGTATTGAGTTTGA+AGG 0.475305 3_1:+69584029 Msa0371430:three_prime_UTR
TATCACTCTCTGGAAGGAAC+AGG 0.475953 3_1:+69583683 Msa0371430:CDS
AAGAGTCATACTGCATGCTT+TGG 0.480969 3_1:+69585163 Msa0371430:three_prime_UTR
CATCATGTTGTCTAATAAAG+AGG 0.482963 3_1:-69584427 None:intergenic
GTTAATACTTGGTGCATGAC+TGG 0.487260 3_1:-69584265 None:intergenic
AACAGGAAAAGCTGCTATCA+AGG 0.492631 3_1:+69583700 Msa0371430:CDS
GCTCCTGCATATACAGGGTA+CGG 0.494313 3_1:-69584946 None:intergenic
ACAAATGTTAGTATGTTAAG+GGG 0.498067 3_1:+69584794 Msa0371430:three_prime_UTR
TAATGTTAAATGCTAAGTCT+TGG 0.502385 3_1:+69585261 Msa0371430:three_prime_UTR
TCTTAGACAATATCACTCTC+TGG 0.504023 3_1:+69583673 Msa0371430:CDS
CGGAGATCGGAGATGACGGT+GGG 0.504404 3_1:-69583171 None:intergenic
ACATATTCTATATTATCTGC+TGG 0.505766 3_1:+69585238 Msa0371430:three_prime_UTR
GAGGTTGTTGAGATTGGAGG+CGG 0.509019 3_1:-69583215 None:intergenic
ATATTGTGGAAAGCAGAGAC+AGG 0.510877 3_1:-69584464 None:intergenic
GTCTGATTTGTAGTTTCAGG+TGG 0.511099 3_1:+69583864 Msa0371430:intron
ACATTATTTCTGTCATTCAA+AGG 0.513924 3_1:+69584288 Msa0371430:three_prime_UTR
GTTCCACCTCACACCGTAGC+TGG 0.515798 3_1:+69585311 Msa0371430:three_prime_UTR
CTTCCCATTCACGAGAAACA+TGG 0.517559 3_1:+69584569 Msa0371430:three_prime_UTR
CCCAATGAAATTCTTCAGCC+AGG 0.526117 3_1:-69584714 None:intergenic
GCTTCGTACAATACACCAAA+GGG 0.530174 3_1:+69584911 Msa0371430:three_prime_UTR
GCATATACAGGGTACGGGAA+GGG 0.530223 3_1:-69584940 None:intergenic
GAGGAGGTTGTTGAGATTGG+AGG 0.537669 3_1:-69583218 None:intergenic
TTCCCGTACCCTGTATATGC+AGG 0.542818 3_1:+69584943 Msa0371430:three_prime_UTR
TTGACTTCCAATTGAAGGAG+AGG 0.548142 3_1:+69584355 Msa0371430:three_prime_UTR
CACACCTTCGAAAATGAAGA+TGG 0.550125 3_1:-69582987 None:intergenic
TTATGACTCATAGTTAAGCA+AGG 0.555816 3_1:+69584146 Msa0371430:three_prime_UTR
GCAGATGAAGTACAATATCA+AGG 0.557775 3_1:-69584493 None:intergenic
CTCCTGCATATACAGGGTAC+GGG 0.559555 3_1:-69584945 None:intergenic
GTTAAGGAGTTAAAGGTCCA+GGG 0.565281 3_1:-69585052 None:intergenic
AATTGCCAAGATTCGAACCC+TGG 0.566311 3_1:+69585035 Msa0371430:three_prime_UTR
AGCTGTGGAATAACCAGCTA+CGG 0.568613 3_1:-69585324 None:intergenic
GTCATGTGACTCAAAAGTCA+CGG 0.569775 3_1:+69584844 Msa0371430:three_prime_UTR
GGTAGTGGTGGCGTTTGCGG+CGG 0.570718 3_1:-69583194 None:intergenic
TGATTGGTATTGAGTTTGAA+GGG 0.572080 3_1:+69584030 Msa0371430:three_prime_UTR
TGCATATACAGGGTACGGGA+AGG 0.572712 3_1:-69584941 None:intergenic
AAAGGAACTGTTATTTCCAG+AGG 0.573287 3_1:+69584306 Msa0371430:three_prime_UTR
AGAAATAATGTGTTAATACT+TGG 0.573301 3_1:-69584276 None:intergenic
TATGACTCATAGTTAAGCAA+GGG 0.576530 3_1:+69584147 Msa0371430:three_prime_UTR
GGAAATTTGATTGAAAATCG+AGG 0.584509 3_1:+69583414 Msa0371430:CDS
TCTGATTTGTAGTTTCAGGT+GGG 0.585375 3_1:+69583865 Msa0371430:intron
ACAACCTCCTCACTGCTCCA+TGG 0.587232 3_1:+69583230 Msa0371430:CDS
ATCATGTTGTCTAATAAAGA+GGG 0.587301 3_1:-69584426 None:intergenic
TATCAAGGCATACCATATTG+TGG 0.587788 3_1:-69584478 None:intergenic
TTCATTGGGATGTATCTACA+AGG 0.592436 3_1:+69584728 Msa0371430:three_prime_UTR
ATCCAGAGAAAGTGAATCCG+CGG 0.593591 3_1:-69583267 None:intergenic
GGAAAGCAGAGACAGGGAGT+TGG 0.593612 3_1:-69584457 None:intergenic
CGGGTTTGAGAAGCGGACCA+TGG 0.595025 3_1:-69583247 None:intergenic
TCATGTGACTCAAAAGTCAC+GGG 0.597952 3_1:+69584845 Msa0371430:three_prime_UTR
TCTCAATGCAAACCAAGTAA+GGG 0.598057 3_1:-69585084 None:intergenic
GCGGCGGAGATCGGAGATGA+CGG 0.602075 3_1:-69583175 None:intergenic
GGCTTCGTACAATACACCAA+AGG 0.603085 3_1:+69584910 Msa0371430:three_prime_UTR
TGTGTGAAACAATGACTCGC+AGG 0.603771 3_1:+69585289 Msa0371430:three_prime_UTR
CTAAAGCTCCTGCATATACA+GGG 0.604947 3_1:-69584951 None:intergenic
GCGGAGATCGGAGATGACGG+TGG 0.606744 3_1:-69583172 None:intergenic
TATCACTGAAACTCAGCAAG+AGG 0.610373 3_1:+69583068 Msa0371430:CDS
GAACAATAAGAAAATGTTTG+GGG 0.612445 3_1:-69584678 None:intergenic
GAATCCGCGGGTTTGAGAAG+CGG 0.621886 3_1:-69583254 None:intergenic
GAGATTGGAGGCGGTAGTGG+TGG 0.631668 3_1:-69583206 None:intergenic
AGACAATATCACTCTCTGGA+AGG 0.632187 3_1:+69583677 Msa0371430:CDS
TAACCAGCTACGGTGTGAGG+TGG 0.634223 3_1:-69585314 None:intergenic
TCCAGAGAAAGTGAATCCGC+GGG 0.634974 3_1:-69583266 None:intergenic
TCAGCTAGAAAACATAGTGT+AGG 0.637733 3_1:-69585210 None:intergenic
GGAGATCGGAGATGACGGTG+GGG 0.638493 3_1:-69583170 None:intergenic
TTTGATGAGATTCTCCAATG+AGG 0.640483 3_1:-69583109 None:intergenic
GATTGGTATTGAGTTTGAAG+GGG 0.648064 3_1:+69584031 Msa0371430:three_prime_UTR
CAAATGTTAGTATGTTAAGG+GGG 0.654005 3_1:+69584795 Msa0371430:three_prime_UTR
ACAACTTTACCATTGCGCCA+AGG 0.657821 3_1:-69584820 None:intergenic
CGGACCATGGAGCAGTGAGG+AGG 0.665229 3_1:-69583234 None:intergenic
TATTGTGGAAAGCAGAGACA+GGG 0.670750 3_1:-69584463 None:intergenic
GTGCATGACTGGTTTCACAA+TGG 0.672125 3_1:-69584254 None:intergenic
TCGTACAATACACCAAAGGG+TGG 0.674949 3_1:+69584914 Msa0371430:three_prime_UTR
TGGTCCGCTTCTCAAACCCG+CGG 0.679979 3_1:+69583250 Msa0371430:CDS
GAATAACCAGCTACGGTGTG+AGG 0.680821 3_1:-69585317 None:intergenic
AAGCGGACCATGGAGCAGTG+AGG 0.702686 3_1:-69583237 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATATAAAATTAATTTGAT+TGG + chr3_1:69584014-69584033 Msa0371430:three_prime_UTR 10.0%
!!! AATTTTAATAACAATTTACT+TGG + chr3_1:69584637-69584656 Msa0371430:three_prime_UTR 10.0%
!! ATACTAACATTTAAAAAAAA+GGG - chr3_1:69584988-69585007 None:intergenic 10.0%
!!! GTATATAAAATTAATTTGAT+TGG + chr3_1:69584014-69584033 Msa0371430:three_prime_UTR 10.0%
!!! AATTTTAATAACAATTTACT+TGG + chr3_1:69584637-69584656 Msa0371430:three_prime_UTR 10.0%
!! ATACTAACATTTAAAAAAAA+GGG - chr3_1:69584988-69585007 None:intergenic 10.0%
!! CATACTAACATTTAAAAAAA+AGG - chr3_1:69584989-69585008 None:intergenic 15.0%
!! CATACTAACATTTAAAAAAA+AGG - chr3_1:69584989-69585008 None:intergenic 15.0%
!! ATAAGGAAAAGAGAATTATT+AGG + chr3_1:69583932-69583951 Msa0371430:CDS 20.0%
!! TAAGGAAAAGAGAATTATTA+GGG + chr3_1:69583933-69583952 Msa0371430:CDS 20.0%
!! AGAAATAATGTGTTAATACT+TGG - chr3_1:69584279-69584298 None:intergenic 20.0%
!! AGAACAATAAGAAAATGTTT+GGG - chr3_1:69584682-69584701 None:intergenic 20.0%
!! TAGAACAATAAGAAAATGTT+TGG - chr3_1:69584683-69584702 None:intergenic 20.0%
!! ATAAGGAAAAGAGAATTATT+AGG + chr3_1:69583932-69583951 Msa0371430:CDS 20.0%
!! TAAGGAAAAGAGAATTATTA+GGG + chr3_1:69583933-69583952 Msa0371430:CDS 20.0%
!! AGAAATAATGTGTTAATACT+TGG - chr3_1:69584279-69584298 None:intergenic 20.0%
!! AGAACAATAAGAAAATGTTT+GGG - chr3_1:69584682-69584701 None:intergenic 20.0%
!! TAGAACAATAAGAAAATGTT+TGG - chr3_1:69584683-69584702 None:intergenic 20.0%
!!! TTTTTTTTCTTTTCAGTGAG+AGG - chr3_1:69583037-69583056 None:intergenic 25.0%
! AATTCATTTCTTCAATTGCA+TGG + chr3_1:69583303-69583322 Msa0371430:intron 25.0%
! GAATGTATATGATCAATTTC+AGG + chr3_1:69583533-69583552 Msa0371430:intron 25.0%
! TGTTAATCTAACTCTATGTT+TGG + chr3_1:69583630-69583649 Msa0371430:intron 25.0%
! TCGTCTATTTATTATAGTGA+TGG + chr3_1:69583833-69583852 Msa0371430:intron 25.0%
! CGTCTATTTATTATAGTGAT+GGG + chr3_1:69583834-69583853 Msa0371430:intron 25.0%
! AAATTTAACTGCCTTTGATA+AGG + chr3_1:69583915-69583934 Msa0371430:CDS 25.0%
!! AATTCTCTTTTCCTTATCAA+AGG - chr3_1:69583929-69583948 None:intergenic 25.0%
!!! ACATTATTTCTGTCATTCAA+AGG + chr3_1:69584288-69584307 Msa0371430:three_prime_UTR 25.0%
!! GTTTTGTAGCAATTATGTTT+AGG + chr3_1:69584377-69584396 Msa0371430:three_prime_UTR 25.0%
! ATGTTTAGGTATAGTCATAT+TGG + chr3_1:69584391-69584410 Msa0371430:three_prime_UTR 25.0%
! TGTTTAGGTATAGTCATATT+GGG + chr3_1:69584392-69584411 Msa0371430:three_prime_UTR 25.0%
!! ATAGTCATATTGGGAATTTT+TGG + chr3_1:69584401-69584420 Msa0371430:three_prime_UTR 25.0%
!! TAGTCATATTGGGAATTTTT+GGG + chr3_1:69584402-69584421 Msa0371430:three_prime_UTR 25.0%
! ATCATGTTGTCTAATAAAGA+GGG - chr3_1:69584429-69584448 None:intergenic 25.0%
! GAACAATAAGAAAATGTTTG+GGG - chr3_1:69584681-69584700 None:intergenic 25.0%
! TTAAAAAATGCAAACCAAGT+AGG - chr3_1:69584762-69584781 None:intergenic 25.0%
! TGACAAATGTTAGTATGTTA+AGG + chr3_1:69584792-69584811 Msa0371430:three_prime_UTR 25.0%
! GACAAATGTTAGTATGTTAA+GGG + chr3_1:69584793-69584812 Msa0371430:three_prime_UTR 25.0%
! ACAAATGTTAGTATGTTAAG+GGG + chr3_1:69584794-69584813 Msa0371430:three_prime_UTR 25.0%
! CTAACATTTAAAAAAAAGGG+CGG - chr3_1:69584985-69585004 None:intergenic 25.0%
! ACATATTCTATATTATCTGC+TGG + chr3_1:69585238-69585257 Msa0371430:three_prime_UTR 25.0%
! TAATGTTAAATGCTAAGTCT+TGG + chr3_1:69585261-69585280 Msa0371430:three_prime_UTR 25.0%
!!! TTTTTTTTCTTTTCAGTGAG+AGG - chr3_1:69583037-69583056 None:intergenic 25.0%
! AATTCATTTCTTCAATTGCA+TGG + chr3_1:69583303-69583322 Msa0371430:intron 25.0%
! GAATGTATATGATCAATTTC+AGG + chr3_1:69583533-69583552 Msa0371430:intron 25.0%
! TGTTAATCTAACTCTATGTT+TGG + chr3_1:69583630-69583649 Msa0371430:intron 25.0%
! TCGTCTATTTATTATAGTGA+TGG + chr3_1:69583833-69583852 Msa0371430:intron 25.0%
! CGTCTATTTATTATAGTGAT+GGG + chr3_1:69583834-69583853 Msa0371430:intron 25.0%
! AAATTTAACTGCCTTTGATA+AGG + chr3_1:69583915-69583934 Msa0371430:CDS 25.0%
!! AATTCTCTTTTCCTTATCAA+AGG - chr3_1:69583929-69583948 None:intergenic 25.0%
!!! ACATTATTTCTGTCATTCAA+AGG + chr3_1:69584288-69584307 Msa0371430:three_prime_UTR 25.0%
!! GTTTTGTAGCAATTATGTTT+AGG + chr3_1:69584377-69584396 Msa0371430:three_prime_UTR 25.0%
! ATGTTTAGGTATAGTCATAT+TGG + chr3_1:69584391-69584410 Msa0371430:three_prime_UTR 25.0%
! TGTTTAGGTATAGTCATATT+GGG + chr3_1:69584392-69584411 Msa0371430:three_prime_UTR 25.0%
!! ATAGTCATATTGGGAATTTT+TGG + chr3_1:69584401-69584420 Msa0371430:three_prime_UTR 25.0%
!! TAGTCATATTGGGAATTTTT+GGG + chr3_1:69584402-69584421 Msa0371430:three_prime_UTR 25.0%
! ATCATGTTGTCTAATAAAGA+GGG - chr3_1:69584429-69584448 None:intergenic 25.0%
! GAACAATAAGAAAATGTTTG+GGG - chr3_1:69584681-69584700 None:intergenic 25.0%
! TTAAAAAATGCAAACCAAGT+AGG - chr3_1:69584762-69584781 None:intergenic 25.0%
! TGACAAATGTTAGTATGTTA+AGG + chr3_1:69584792-69584811 Msa0371430:three_prime_UTR 25.0%
! GACAAATGTTAGTATGTTAA+GGG + chr3_1:69584793-69584812 Msa0371430:three_prime_UTR 25.0%
! ACAAATGTTAGTATGTTAAG+GGG + chr3_1:69584794-69584813 Msa0371430:three_prime_UTR 25.0%
! CTAACATTTAAAAAAAAGGG+CGG - chr3_1:69584985-69585004 None:intergenic 25.0%
! ACATATTCTATATTATCTGC+TGG + chr3_1:69585238-69585257 Msa0371430:three_prime_UTR 25.0%
! TAATGTTAAATGCTAAGTCT+TGG + chr3_1:69585261-69585280 Msa0371430:three_prime_UTR 25.0%
AGCGATGAAGAAAAGTTTAT+GGG - chr3_1:69582944-69582963 None:intergenic 30.0%
TAGCGATGAAGAAAAGTTTA+TGG - chr3_1:69582945-69582964 None:intergenic 30.0%
GGAAATTTGATTGAAAATCG+AGG + chr3_1:69583414-69583433 Msa0371430:CDS 30.0%
AGTTGCTGATAGTTTGAATT+TGG + chr3_1:69583485-69583504 Msa0371430:intron 30.0%
TTGAATTTGGATTTGTGTTC+TGG + chr3_1:69583498-69583517 Msa0371430:intron 30.0%
TTGGTTATCTAAACTGTATC+AGG + chr3_1:69583649-69583668 Msa0371430:intron 30.0%
! TATGTCTGATTTGTAGTTTC+AGG + chr3_1:69583861-69583880 Msa0371430:intron 30.0%
GTGAATATTAAGCGTGTATT+TGG + chr3_1:69583955-69583974 Msa0371430:CDS 30.0%
! TTGATTGGTATTGAGTTTGA+AGG + chr3_1:69584029-69584048 Msa0371430:three_prime_UTR 30.0%
! TGATTGGTATTGAGTTTGAA+GGG + chr3_1:69584030-69584049 Msa0371430:three_prime_UTR 30.0%
ATGTTTGGATGTCTTTACTT+TGG + chr3_1:69584062-69584081 Msa0371430:three_prime_UTR 30.0%
TTATGACTCATAGTTAAGCA+AGG + chr3_1:69584146-69584165 Msa0371430:three_prime_UTR 30.0%
TATGACTCATAGTTAAGCAA+GGG + chr3_1:69584147-69584166 Msa0371430:three_prime_UTR 30.0%
!!! ATGGAAAATGGTTTTGTTTC+CGG - chr3_1:69584238-69584257 None:intergenic 30.0%
!!! ATGTTTTGACTTCCAATTGA+AGG + chr3_1:69584350-69584369 Msa0371430:three_prime_UTR 30.0%
CATCATGTTGTCTAATAAAG+AGG - chr3_1:69584430-69584449 None:intergenic 30.0%
CAAATGTTAGTATGTTAAGG+GGG + chr3_1:69584795-69584814 Msa0371430:three_prime_UTR 30.0%
TAAAGGAGTTAAGGAGTTAA+AGG - chr3_1:69585062-69585081 None:intergenic 30.0%
CATAGTGTAGGTCATTAAAA+TGG - chr3_1:69585201-69585220 None:intergenic 30.0%
AGCGATGAAGAAAAGTTTAT+GGG - chr3_1:69582944-69582963 None:intergenic 30.0%
TAGCGATGAAGAAAAGTTTA+TGG - chr3_1:69582945-69582964 None:intergenic 30.0%
GGAAATTTGATTGAAAATCG+AGG + chr3_1:69583414-69583433 Msa0371430:CDS 30.0%
AGTTGCTGATAGTTTGAATT+TGG + chr3_1:69583485-69583504 Msa0371430:intron 30.0%
TTGAATTTGGATTTGTGTTC+TGG + chr3_1:69583498-69583517 Msa0371430:intron 30.0%
TTGGTTATCTAAACTGTATC+AGG + chr3_1:69583649-69583668 Msa0371430:intron 30.0%
! TATGTCTGATTTGTAGTTTC+AGG + chr3_1:69583861-69583880 Msa0371430:intron 30.0%
GTGAATATTAAGCGTGTATT+TGG + chr3_1:69583955-69583974 Msa0371430:CDS 30.0%
! TTGATTGGTATTGAGTTTGA+AGG + chr3_1:69584029-69584048 Msa0371430:three_prime_UTR 30.0%
! TGATTGGTATTGAGTTTGAA+GGG + chr3_1:69584030-69584049 Msa0371430:three_prime_UTR 30.0%
ATGTTTGGATGTCTTTACTT+TGG + chr3_1:69584062-69584081 Msa0371430:three_prime_UTR 30.0%
TTATGACTCATAGTTAAGCA+AGG + chr3_1:69584146-69584165 Msa0371430:three_prime_UTR 30.0%
TATGACTCATAGTTAAGCAA+GGG + chr3_1:69584147-69584166 Msa0371430:three_prime_UTR 30.0%
!!! ATGGAAAATGGTTTTGTTTC+CGG - chr3_1:69584238-69584257 None:intergenic 30.0%
!!! ATGTTTTGACTTCCAATTGA+AGG + chr3_1:69584350-69584369 Msa0371430:three_prime_UTR 30.0%
CATCATGTTGTCTAATAAAG+AGG - chr3_1:69584430-69584449 None:intergenic 30.0%
CAAATGTTAGTATGTTAAGG+GGG + chr3_1:69584795-69584814 Msa0371430:three_prime_UTR 30.0%
TAAAGGAGTTAAGGAGTTAA+AGG - chr3_1:69585062-69585081 None:intergenic 30.0%
CATAGTGTAGGTCATTAAAA+TGG - chr3_1:69585201-69585220 None:intergenic 30.0%
AATCAACTAACACGTGTCTT+AGG + chr3_1:69582908-69582927 Msa0371430:five_prime_UTR 35.0%
TTTGATGAGATTCTCCAATG+AGG - chr3_1:69583112-69583131 None:intergenic 35.0%
!!! ACTGTTTCTACTTGTTTTGC+AGG + chr3_1:69583383-69583402 Msa0371430:intron 35.0%
AATTTGGATTTGTGTTCTGG+TGG + chr3_1:69583501-69583520 Msa0371430:intron 35.0%
TCTTAGACAATATCACTCTC+TGG + chr3_1:69583673-69583692 Msa0371430:CDS 35.0%
CTTCCACATTCTTATATACC+TGG + chr3_1:69583748-69583767 Msa0371430:intron 35.0%
TTCTTATATACCTGGCTGAA+TGG + chr3_1:69583756-69583775 Msa0371430:intron 35.0%
CGAAGAAACATAACATGCAA+CGG - chr3_1:69583816-69583835 None:intergenic 35.0%
! TCTGATTTGTAGTTTCAGGT+GGG + chr3_1:69583865-69583884 Msa0371430:intron 35.0%
! GATTGGTATTGAGTTTGAAG+GGG + chr3_1:69584031-69584050 Msa0371430:three_prime_UTR 35.0%
! ACTGGTTTCACAATGGAAAA+TGG - chr3_1:69584250-69584269 None:intergenic 35.0%
!! AAAGGAACTGTTATTTCCAG+AGG + chr3_1:69584306-69584325 Msa0371430:three_prime_UTR 35.0%
TACAAAACCTCTCCTTCAAT+TGG - chr3_1:69584365-69584384 None:intergenic 35.0%
TATCAAGGCATACCATATTG+TGG - chr3_1:69584481-69584500 None:intergenic 35.0%
GCAGATGAAGTACAATATCA+AGG - chr3_1:69584496-69584515 None:intergenic 35.0%
!! AATGTTTGGGGTTAACTTGT+TGG - chr3_1:69584669-69584688 None:intergenic 35.0%
TGTTCTATCTGTACATTTCC+TGG + chr3_1:69584696-69584715 Msa0371430:three_prime_UTR 35.0%
TTCATTGGGATGTATCTACA+AGG + chr3_1:69584728-69584747 Msa0371430:three_prime_UTR 35.0%
AACCTCTTGTGTAAAAAGCA+GGG + chr3_1:69584884-69584903 Msa0371430:three_prime_UTR 35.0%
GTAAGGGTTTAAAGGAGTTA+AGG - chr3_1:69585071-69585090 None:intergenic 35.0%
AACTCCTTTAAACCCTTACT+TGG + chr3_1:69585072-69585091 Msa0371430:three_prime_UTR 35.0%
CAAACCAAGTAAGGGTTTAA+AGG - chr3_1:69585079-69585098 None:intergenic 35.0%
TCTCAATGCAAACCAAGTAA+GGG - chr3_1:69585087-69585106 None:intergenic 35.0%
ATCTCAATGCAAACCAAGTA+AGG - chr3_1:69585088-69585107 None:intergenic 35.0%
TCAGCTAGAAAACATAGTGT+AGG - chr3_1:69585213-69585232 None:intergenic 35.0%
AATCAACTAACACGTGTCTT+AGG + chr3_1:69582908-69582927 Msa0371430:five_prime_UTR 35.0%
TTTGATGAGATTCTCCAATG+AGG - chr3_1:69583112-69583131 None:intergenic 35.0%
!!! ACTGTTTCTACTTGTTTTGC+AGG + chr3_1:69583383-69583402 Msa0371430:intron 35.0%
AATTTGGATTTGTGTTCTGG+TGG + chr3_1:69583501-69583520 Msa0371430:intron 35.0%
TCTTAGACAATATCACTCTC+TGG + chr3_1:69583673-69583692 Msa0371430:CDS 35.0%
CTTCCACATTCTTATATACC+TGG + chr3_1:69583748-69583767 Msa0371430:intron 35.0%
TTCTTATATACCTGGCTGAA+TGG + chr3_1:69583756-69583775 Msa0371430:intron 35.0%
CGAAGAAACATAACATGCAA+CGG - chr3_1:69583816-69583835 None:intergenic 35.0%
! TCTGATTTGTAGTTTCAGGT+GGG + chr3_1:69583865-69583884 Msa0371430:intron 35.0%
! GATTGGTATTGAGTTTGAAG+GGG + chr3_1:69584031-69584050 Msa0371430:three_prime_UTR 35.0%
! ACTGGTTTCACAATGGAAAA+TGG - chr3_1:69584250-69584269 None:intergenic 35.0%
!! AAAGGAACTGTTATTTCCAG+AGG + chr3_1:69584306-69584325 Msa0371430:three_prime_UTR 35.0%
TACAAAACCTCTCCTTCAAT+TGG - chr3_1:69584365-69584384 None:intergenic 35.0%
TATCAAGGCATACCATATTG+TGG - chr3_1:69584481-69584500 None:intergenic 35.0%
GCAGATGAAGTACAATATCA+AGG - chr3_1:69584496-69584515 None:intergenic 35.0%
!! AATGTTTGGGGTTAACTTGT+TGG - chr3_1:69584669-69584688 None:intergenic 35.0%
TGTTCTATCTGTACATTTCC+TGG + chr3_1:69584696-69584715 Msa0371430:three_prime_UTR 35.0%
TTCATTGGGATGTATCTACA+AGG + chr3_1:69584728-69584747 Msa0371430:three_prime_UTR 35.0%
AACCTCTTGTGTAAAAAGCA+GGG + chr3_1:69584884-69584903 Msa0371430:three_prime_UTR 35.0%
GTAAGGGTTTAAAGGAGTTA+AGG - chr3_1:69585071-69585090 None:intergenic 35.0%
AACTCCTTTAAACCCTTACT+TGG + chr3_1:69585072-69585091 Msa0371430:three_prime_UTR 35.0%
CAAACCAAGTAAGGGTTTAA+AGG - chr3_1:69585079-69585098 None:intergenic 35.0%
TCTCAATGCAAACCAAGTAA+GGG - chr3_1:69585087-69585106 None:intergenic 35.0%
ATCTCAATGCAAACCAAGTA+AGG - chr3_1:69585088-69585107 None:intergenic 35.0%
TCAGCTAGAAAACATAGTGT+AGG - chr3_1:69585213-69585232 None:intergenic 35.0%
! GTCACCATCTTCATTTTCGA+AGG + chr3_1:69582983-69583002 Msa0371430:five_prime_UTR 40.0%
CACACCTTCGAAAATGAAGA+TGG - chr3_1:69582990-69583009 None:intergenic 40.0%
TATCACTGAAACTCAGCAAG+AGG + chr3_1:69583068-69583087 Msa0371430:CDS 40.0%
!!! CTTGTTTTGCAGGTTAGAGT+TGG + chr3_1:69583393-69583412 Msa0371430:intron 40.0%
AGACAATATCACTCTCTGGA+AGG + chr3_1:69583677-69583696 Msa0371430:CDS 40.0%
AACAGGAAAAGCTGCTATCA+AGG + chr3_1:69583700-69583719 Msa0371430:CDS 40.0%
CAGCCAGGTATATAAGAATG+TGG - chr3_1:69583754-69583773 None:intergenic 40.0%
! GTCTGATTTGTAGTTTCAGG+TGG + chr3_1:69583864-69583883 Msa0371430:intron 40.0%
GTCGCTTAAATCACATTTGC+CGG + chr3_1:69584216-69584235 Msa0371430:three_prime_UTR 40.0%
!! GTTAATACTTGGTGCATGAC+TGG - chr3_1:69584268-69584287 None:intergenic 40.0%
TCACATGAAATGAAAGCCTC+TGG - chr3_1:69584325-69584344 None:intergenic 40.0%
TTGACTTCCAATTGAAGGAG+AGG + chr3_1:69584355-69584374 Msa0371430:three_prime_UTR 40.0%
TATTGTGGAAAGCAGAGACA+GGG - chr3_1:69584466-69584485 None:intergenic 40.0%
ATATTGTGGAAAGCAGAGAC+AGG - chr3_1:69584467-69584486 None:intergenic 40.0%
TGTCTCTGCTTTCCACAATA+TGG + chr3_1:69584466-69584485 Msa0371430:three_prime_UTR 40.0%
TCACCATGTTTCTCGTGAAT+GGG - chr3_1:69584575-69584594 None:intergenic 40.0%
TTCACCATGTTTCTCGTGAA+TGG - chr3_1:69584576-69584595 None:intergenic 40.0%
TCCTGGCTGAAGAATTTCAT+TGG + chr3_1:69584713-69584732 Msa0371430:three_prime_UTR 40.0%
CCTGGCTGAAGAATTTCATT+GGG + chr3_1:69584714-69584733 Msa0371430:three_prime_UTR 40.0%
GTCATGTGACTCAAAAGTCA+CGG + chr3_1:69584844-69584863 Msa0371430:three_prime_UTR 40.0%
TCATGTGACTCAAAAGTCAC+GGG + chr3_1:69584845-69584864 Msa0371430:three_prime_UTR 40.0%
! TTACACAAGAGGTTGTTTCC+AGG - chr3_1:69584878-69584897 None:intergenic 40.0%
CAACCTCTTGTGTAAAAAGC+AGG + chr3_1:69584883-69584902 Msa0371430:three_prime_UTR 40.0%
!!! TACCCTGCTTTTTACACAAG+AGG - chr3_1:69584889-69584908 None:intergenic 40.0%
CTTGTGTAAAAAGCAGGGTA+AGG + chr3_1:69584889-69584908 Msa0371430:three_prime_UTR 40.0%
GCTTCGTACAATACACCAAA+GGG + chr3_1:69584911-69584930 Msa0371430:three_prime_UTR 40.0%
CTAAAGCTCCTGCATATACA+GGG - chr3_1:69584954-69584973 None:intergenic 40.0%
ACTAAAGCTCCTGCATATAC+AGG - chr3_1:69584955-69584974 None:intergenic 40.0%
CATTTAAAAAAAAGGGCGGC+TGG - chr3_1:69584981-69585000 None:intergenic 40.0%
GTTAAGGAGTTAAAGGTCCA+GGG - chr3_1:69585055-69585074 None:intergenic 40.0%
AGTTAAGGAGTTAAAGGTCC+AGG - chr3_1:69585056-69585075 None:intergenic 40.0%
AAGAGTCATACTGCATGCTT+TGG + chr3_1:69585163-69585182 Msa0371430:three_prime_UTR 40.0%
! GTCACCATCTTCATTTTCGA+AGG + chr3_1:69582983-69583002 Msa0371430:five_prime_UTR 40.0%
CACACCTTCGAAAATGAAGA+TGG - chr3_1:69582990-69583009 None:intergenic 40.0%
TATCACTGAAACTCAGCAAG+AGG + chr3_1:69583068-69583087 Msa0371430:CDS 40.0%
!!! CTTGTTTTGCAGGTTAGAGT+TGG + chr3_1:69583393-69583412 Msa0371430:intron 40.0%
AGACAATATCACTCTCTGGA+AGG + chr3_1:69583677-69583696 Msa0371430:CDS 40.0%
AACAGGAAAAGCTGCTATCA+AGG + chr3_1:69583700-69583719 Msa0371430:CDS 40.0%
CAGCCAGGTATATAAGAATG+TGG - chr3_1:69583754-69583773 None:intergenic 40.0%
! GTCTGATTTGTAGTTTCAGG+TGG + chr3_1:69583864-69583883 Msa0371430:intron 40.0%
GTCGCTTAAATCACATTTGC+CGG + chr3_1:69584216-69584235 Msa0371430:three_prime_UTR 40.0%
!! GTTAATACTTGGTGCATGAC+TGG - chr3_1:69584268-69584287 None:intergenic 40.0%
TCACATGAAATGAAAGCCTC+TGG - chr3_1:69584325-69584344 None:intergenic 40.0%
TTGACTTCCAATTGAAGGAG+AGG + chr3_1:69584355-69584374 Msa0371430:three_prime_UTR 40.0%
TATTGTGGAAAGCAGAGACA+GGG - chr3_1:69584466-69584485 None:intergenic 40.0%
ATATTGTGGAAAGCAGAGAC+AGG - chr3_1:69584467-69584486 None:intergenic 40.0%
TGTCTCTGCTTTCCACAATA+TGG + chr3_1:69584466-69584485 Msa0371430:three_prime_UTR 40.0%
TCACCATGTTTCTCGTGAAT+GGG - chr3_1:69584575-69584594 None:intergenic 40.0%
TTCACCATGTTTCTCGTGAA+TGG - chr3_1:69584576-69584595 None:intergenic 40.0%
TCCTGGCTGAAGAATTTCAT+TGG + chr3_1:69584713-69584732 Msa0371430:three_prime_UTR 40.0%
CCTGGCTGAAGAATTTCATT+GGG + chr3_1:69584714-69584733 Msa0371430:three_prime_UTR 40.0%
GTCATGTGACTCAAAAGTCA+CGG + chr3_1:69584844-69584863 Msa0371430:three_prime_UTR 40.0%
TCATGTGACTCAAAAGTCAC+GGG + chr3_1:69584845-69584864 Msa0371430:three_prime_UTR 40.0%
! TTACACAAGAGGTTGTTTCC+AGG - chr3_1:69584878-69584897 None:intergenic 40.0%
CAACCTCTTGTGTAAAAAGC+AGG + chr3_1:69584883-69584902 Msa0371430:three_prime_UTR 40.0%
!!! TACCCTGCTTTTTACACAAG+AGG - chr3_1:69584889-69584908 None:intergenic 40.0%
CTTGTGTAAAAAGCAGGGTA+AGG + chr3_1:69584889-69584908 Msa0371430:three_prime_UTR 40.0%
GCTTCGTACAATACACCAAA+GGG + chr3_1:69584911-69584930 Msa0371430:three_prime_UTR 40.0%
CTAAAGCTCCTGCATATACA+GGG - chr3_1:69584954-69584973 None:intergenic 40.0%
ACTAAAGCTCCTGCATATAC+AGG - chr3_1:69584955-69584974 None:intergenic 40.0%
CATTTAAAAAAAAGGGCGGC+TGG - chr3_1:69584981-69585000 None:intergenic 40.0%
GTTAAGGAGTTAAAGGTCCA+GGG - chr3_1:69585055-69585074 None:intergenic 40.0%
AGTTAAGGAGTTAAAGGTCC+AGG - chr3_1:69585056-69585075 None:intergenic 40.0%
AAGAGTCATACTGCATGCTT+TGG + chr3_1:69585163-69585182 Msa0371430:three_prime_UTR 40.0%
CCAATGAGGATGCGAAGAAT+TGG - chr3_1:69583098-69583117 None:intergenic 45.0%
CCAATTCTTCGCATCCTCAT+TGG + chr3_1:69583095-69583114 Msa0371430:CDS 45.0%
AGTGAGGAGGTTGTTGAGAT+TGG - chr3_1:69583224-69583243 None:intergenic 45.0%
ATCCAGAGAAAGTGAATCCG+CGG - chr3_1:69583270-69583289 None:intergenic 45.0%
! GATTTGTGTTCTGGTGGATG+TGG + chr3_1:69583507-69583526 Msa0371430:intron 45.0%
! TATCACTCTCTGGAAGGAAC+AGG + chr3_1:69583683-69583702 Msa0371430:CDS 45.0%
TTAAGCACTACCATTCAGCC+AGG - chr3_1:69583769-69583788 None:intergenic 45.0%
! AGGTGGGAATGTTGAGTTGT+TGG + chr3_1:69583881-69583900 Msa0371430:CDS 45.0%
! GAAGGGGTGTGATTCATGTT+TGG + chr3_1:69584047-69584066 Msa0371430:three_prime_UTR 45.0%
!! GTGCATGACTGGTTTCACAA+TGG - chr3_1:69584257-69584276 None:intergenic 45.0%
CTTCCCATTCACGAGAAACA+TGG + chr3_1:69584569-69584588 Msa0371430:three_prime_UTR 45.0%
CCCAATGAAATTCTTCAGCC+AGG - chr3_1:69584717-69584736 None:intergenic 45.0%
ACAAGGCTGTTCATCCTACT+TGG + chr3_1:69584745-69584764 Msa0371430:three_prime_UTR 45.0%
ACAACTTTACCATTGCGCCA+AGG - chr3_1:69584823-69584842 None:intergenic 45.0%
AAAGTCACGGGTTCAATTCC+TGG + chr3_1:69584857-69584876 Msa0371430:three_prime_UTR 45.0%
GGCTTCGTACAATACACCAA+AGG + chr3_1:69584910-69584929 Msa0371430:three_prime_UTR 45.0%
TCGTACAATACACCAAAGGG+TGG + chr3_1:69584914-69584933 Msa0371430:three_prime_UTR 45.0%
AATTGCCAAGATTCGAACCC+TGG + chr3_1:69585035-69585054 Msa0371430:three_prime_UTR 45.0%
TGTGTGAAACAATGACTCGC+AGG + chr3_1:69585289-69585308 Msa0371430:three_prime_UTR 45.0%
CCAATGAGGATGCGAAGAAT+TGG - chr3_1:69583098-69583117 None:intergenic 45.0%
CCAATTCTTCGCATCCTCAT+TGG + chr3_1:69583095-69583114 Msa0371430:CDS 45.0%
AGTGAGGAGGTTGTTGAGAT+TGG - chr3_1:69583224-69583243 None:intergenic 45.0%
ATCCAGAGAAAGTGAATCCG+CGG - chr3_1:69583270-69583289 None:intergenic 45.0%
! GATTTGTGTTCTGGTGGATG+TGG + chr3_1:69583507-69583526 Msa0371430:intron 45.0%
! TATCACTCTCTGGAAGGAAC+AGG + chr3_1:69583683-69583702 Msa0371430:CDS 45.0%
TTAAGCACTACCATTCAGCC+AGG - chr3_1:69583769-69583788 None:intergenic 45.0%
! AGGTGGGAATGTTGAGTTGT+TGG + chr3_1:69583881-69583900 Msa0371430:CDS 45.0%
! GAAGGGGTGTGATTCATGTT+TGG + chr3_1:69584047-69584066 Msa0371430:three_prime_UTR 45.0%
!! GTGCATGACTGGTTTCACAA+TGG - chr3_1:69584257-69584276 None:intergenic 45.0%
CTTCCCATTCACGAGAAACA+TGG + chr3_1:69584569-69584588 Msa0371430:three_prime_UTR 45.0%
CCCAATGAAATTCTTCAGCC+AGG - chr3_1:69584717-69584736 None:intergenic 45.0%
ACAAGGCTGTTCATCCTACT+TGG + chr3_1:69584745-69584764 Msa0371430:three_prime_UTR 45.0%
ACAACTTTACCATTGCGCCA+AGG - chr3_1:69584823-69584842 None:intergenic 45.0%
AAAGTCACGGGTTCAATTCC+TGG + chr3_1:69584857-69584876 Msa0371430:three_prime_UTR 45.0%
GGCTTCGTACAATACACCAA+AGG + chr3_1:69584910-69584929 Msa0371430:three_prime_UTR 45.0%
TCGTACAATACACCAAAGGG+TGG + chr3_1:69584914-69584933 Msa0371430:three_prime_UTR 45.0%
AATTGCCAAGATTCGAACCC+TGG + chr3_1:69585035-69585054 Msa0371430:three_prime_UTR 45.0%
TGTGTGAAACAATGACTCGC+AGG + chr3_1:69585289-69585308 Msa0371430:three_prime_UTR 45.0%
GAGGTTGTTGAGATTGGAGG+CGG - chr3_1:69583218-69583237 None:intergenic 50.0%
GAGGAGGTTGTTGAGATTGG+AGG - chr3_1:69583221-69583240 None:intergenic 50.0%
TCCAGAGAAAGTGAATCCGC+GGG - chr3_1:69583269-69583288 None:intergenic 50.0%
! AATTTCAGGTCGCGCGTATG+AGG + chr3_1:69583547-69583566 Msa0371430:intron 50.0%
!! ATCTGCCCCTCTTGCTTTTG+CGG + chr3_1:69584510-69584529 Msa0371430:three_prime_UTR 50.0%
TTTCCCCCGCAAAAGCAAGA+GGG - chr3_1:69584519-69584538 None:intergenic 50.0%
AGTATGTTAAGGGGGAGCCT+TGG + chr3_1:69584803-69584822 Msa0371430:three_prime_UTR 50.0%
CATATACAGGGTACGGGAAG+GGG - chr3_1:69584942-69584961 None:intergenic 50.0%
GCATATACAGGGTACGGGAA+GGG - chr3_1:69584943-69584962 None:intergenic 50.0%
TGCATATACAGGGTACGGGA+AGG - chr3_1:69584944-69584963 None:intergenic 50.0%
TTCCCGTACCCTGTATATGC+AGG + chr3_1:69584943-69584962 Msa0371430:three_prime_UTR 50.0%
CTCCTGCATATACAGGGTAC+GGG - chr3_1:69584948-69584967 None:intergenic 50.0%
GCTCCTGCATATACAGGGTA+CGG - chr3_1:69584949-69584968 None:intergenic 50.0%
AAGGTCCAGGGTTCGAATCT+TGG - chr3_1:69585043-69585062 None:intergenic 50.0%
GAGGTTGTTGAGATTGGAGG+CGG - chr3_1:69583218-69583237 None:intergenic 50.0%
GAGGAGGTTGTTGAGATTGG+AGG - chr3_1:69583221-69583240 None:intergenic 50.0%
TCCAGAGAAAGTGAATCCGC+GGG - chr3_1:69583269-69583288 None:intergenic 50.0%
! AATTTCAGGTCGCGCGTATG+AGG + chr3_1:69583547-69583566 Msa0371430:intron 50.0%
!! ATCTGCCCCTCTTGCTTTTG+CGG + chr3_1:69584510-69584529 Msa0371430:three_prime_UTR 50.0%
TTTCCCCCGCAAAAGCAAGA+GGG - chr3_1:69584519-69584538 None:intergenic 50.0%
AGTATGTTAAGGGGGAGCCT+TGG + chr3_1:69584803-69584822 Msa0371430:three_prime_UTR 50.0%
CATATACAGGGTACGGGAAG+GGG - chr3_1:69584942-69584961 None:intergenic 50.0%
GCATATACAGGGTACGGGAA+GGG - chr3_1:69584943-69584962 None:intergenic 50.0%
TGCATATACAGGGTACGGGA+AGG - chr3_1:69584944-69584963 None:intergenic 50.0%
TTCCCGTACCCTGTATATGC+AGG + chr3_1:69584943-69584962 Msa0371430:three_prime_UTR 50.0%
CTCCTGCATATACAGGGTAC+GGG - chr3_1:69584948-69584967 None:intergenic 50.0%
GCTCCTGCATATACAGGGTA+CGG - chr3_1:69584949-69584968 None:intergenic 50.0%
AAGGTCCAGGGTTCGAATCT+TGG - chr3_1:69585043-69585062 None:intergenic 50.0%
GTTGAGATTGGAGGCGGTAG+TGG - chr3_1:69583212-69583231 None:intergenic 55.0%
ACAACCTCCTCACTGCTCCA+TGG + chr3_1:69583230-69583249 Msa0371430:CDS 55.0%
GAATCCGCGGGTTTGAGAAG+CGG - chr3_1:69583257-69583276 None:intergenic 55.0%
ACCCGCGGATTCACTTTCTC+TGG + chr3_1:69583265-69583284 Msa0371430:CDS 55.0%
GGAAAGCAGAGACAGGGAGT+TGG - chr3_1:69584460-69584479 None:intergenic 55.0%
!! TCTGCCCCTCTTGCTTTTGC+GGG + chr3_1:69584511-69584530 Msa0371430:three_prime_UTR 55.0%
TTCCCCCGCAAAAGCAAGAG+GGG - chr3_1:69584518-69584537 None:intergenic 55.0%
GTTTCCCCCGCAAAAGCAAG+AGG - chr3_1:69584520-69584539 None:intergenic 55.0%
GTTGAGATTGGAGGCGGTAG+TGG - chr3_1:69583212-69583231 None:intergenic 55.0%
ACAACCTCCTCACTGCTCCA+TGG + chr3_1:69583230-69583249 Msa0371430:CDS 55.0%
GAATCCGCGGGTTTGAGAAG+CGG - chr3_1:69583257-69583276 None:intergenic 55.0%
ACCCGCGGATTCACTTTCTC+TGG + chr3_1:69583265-69583284 Msa0371430:CDS 55.0%
GGAAAGCAGAGACAGGGAGT+TGG - chr3_1:69584460-69584479 None:intergenic 55.0%
!! TCTGCCCCTCTTGCTTTTGC+GGG + chr3_1:69584511-69584530 Msa0371430:three_prime_UTR 55.0%
TTCCCCCGCAAAAGCAAGAG+GGG - chr3_1:69584518-69584537 None:intergenic 55.0%
GTTTCCCCCGCAAAAGCAAG+AGG - chr3_1:69584520-69584539 None:intergenic 55.0%
! TCGGAGATGACGGTGGGGAA+GGG - chr3_1:69583168-69583187 None:intergenic 60.0%
! ATCGGAGATGACGGTGGGGA+AGG - chr3_1:69583169-69583188 None:intergenic 60.0%
! GGAGATCGGAGATGACGGTG+GGG - chr3_1:69583173-69583192 None:intergenic 60.0%
! CGGAGATCGGAGATGACGGT+GGG - chr3_1:69583174-69583193 None:intergenic 60.0%
! GAGATTGGAGGCGGTAGTGG+TGG - chr3_1:69583209-69583228 None:intergenic 60.0%
AAGCGGACCATGGAGCAGTG+AGG - chr3_1:69583240-69583259 None:intergenic 60.0%
CGGGTTTGAGAAGCGGACCA+TGG - chr3_1:69583250-69583269 None:intergenic 60.0%
TGGTCCGCTTCTCAAACCCG+CGG + chr3_1:69583250-69583269 Msa0371430:CDS 60.0%
!! CTGCCCCTCTTGCTTTTGCG+GGG + chr3_1:69584512-69584531 Msa0371430:three_prime_UTR 60.0%
!! TGCCCCTCTTGCTTTTGCGG+GGG + chr3_1:69584513-69584532 Msa0371430:three_prime_UTR 60.0%
! TCGGAGATGACGGTGGGGAA+GGG - chr3_1:69583168-69583187 None:intergenic 60.0%
! ATCGGAGATGACGGTGGGGA+AGG - chr3_1:69583169-69583188 None:intergenic 60.0%
! GGAGATCGGAGATGACGGTG+GGG - chr3_1:69583173-69583192 None:intergenic 60.0%
! CGGAGATCGGAGATGACGGT+GGG - chr3_1:69583174-69583193 None:intergenic 60.0%
! GAGATTGGAGGCGGTAGTGG+TGG - chr3_1:69583209-69583228 None:intergenic 60.0%
AAGCGGACCATGGAGCAGTG+AGG - chr3_1:69583240-69583259 None:intergenic 60.0%
CGGGTTTGAGAAGCGGACCA+TGG - chr3_1:69583250-69583269 None:intergenic 60.0%
TGGTCCGCTTCTCAAACCCG+CGG + chr3_1:69583250-69583269 Msa0371430:CDS 60.0%
!! CTGCCCCTCTTGCTTTTGCG+GGG + chr3_1:69584512-69584531 Msa0371430:three_prime_UTR 60.0%
!! TGCCCCTCTTGCTTTTGCGG+GGG + chr3_1:69584513-69584532 Msa0371430:three_prime_UTR 60.0%
TGGGGAAGGGGAGGAAGAGG+TGG - chr3_1:69583155-69583174 None:intergenic 65.0%
! AGATGACGGTGGGGAAGGGG+AGG - chr3_1:69583164-69583183 None:intergenic 65.0%
! CGGAGATGACGGTGGGGAAG+GGG - chr3_1:69583167-69583186 None:intergenic 65.0%
! GCGGAGATCGGAGATGACGG+TGG - chr3_1:69583175-69583194 None:intergenic 65.0%
GCGGCGGAGATCGGAGATGA+CGG - chr3_1:69583178-69583197 None:intergenic 65.0%
! GGTAGTGGTGGCGTTTGCGG+CGG - chr3_1:69583197-69583216 None:intergenic 65.0%
! GGCGGTAGTGGTGGCGTTTG+CGG - chr3_1:69583200-69583219 None:intergenic 65.0%
CGGACCATGGAGCAGTGAGG+AGG - chr3_1:69583237-69583256 None:intergenic 65.0%
AAGGGGGAGCCTTGGCGCAA+TGG + chr3_1:69584811-69584830 Msa0371430:three_prime_UTR 65.0%
CGGGAAGGGGTTCCACCCTT+TGG - chr3_1:69584929-69584948 None:intergenic 65.0%
TGGGGAAGGGGAGGAAGAGG+TGG - chr3_1:69583155-69583174 None:intergenic 65.0%
! AGATGACGGTGGGGAAGGGG+AGG - chr3_1:69583164-69583183 None:intergenic 65.0%
! CGGAGATGACGGTGGGGAAG+GGG - chr3_1:69583167-69583186 None:intergenic 65.0%
! GCGGAGATCGGAGATGACGG+TGG - chr3_1:69583175-69583194 None:intergenic 65.0%
GCGGCGGAGATCGGAGATGA+CGG - chr3_1:69583178-69583197 None:intergenic 65.0%
! GGTAGTGGTGGCGTTTGCGG+CGG - chr3_1:69583197-69583216 None:intergenic 65.0%
! GGCGGTAGTGGTGGCGTTTG+CGG - chr3_1:69583200-69583219 None:intergenic 65.0%
CGGACCATGGAGCAGTGAGG+AGG - chr3_1:69583237-69583256 None:intergenic 65.0%
AAGGGGGAGCCTTGGCGCAA+TGG + chr3_1:69584811-69584830 Msa0371430:three_prime_UTR 65.0%
CGGGAAGGGGTTCCACCCTT+TGG - chr3_1:69584929-69584948 None:intergenic 65.0%
CGGTGGGGAAGGGGAGGAAG+AGG - chr3_1:69583158-69583177 None:intergenic 70.0%
GCGTTTGCGGCGGCGGAGAT+CGG - chr3_1:69583187-69583206 None:intergenic 70.0%
! AGTGGTGGCGTTTGCGGCGG+CGG - chr3_1:69583194-69583213 None:intergenic 70.0%
CGGTGGGGAAGGGGAGGAAG+AGG - chr3_1:69583158-69583177 None:intergenic 70.0%
GCGTTTGCGGCGGCGGAGAT+CGG - chr3_1:69583187-69583206 None:intergenic 70.0%
! AGTGGTGGCGTTTGCGGCGG+CGG - chr3_1:69583194-69583213 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 69582904 69585332 69582904 ID=Msa0371430;Name=Msa0371430
chr3_1 mRNA 69582904 69585332 69582904 ID=Msa0371430-mRNA-1;Parent=Msa0371430;Name=Msa0371430-mRNA-1;_AED=0.12;_eAED=0.12;_QI=154|1|1|1|1|1|5|1324|154
chr3_1 exon 69582904 69583294 69582904 ID=Msa0371430-mRNA-1:exon:14828;Parent=Msa0371430-mRNA-1
chr3_1 exon 69583405 69583435 69583405 ID=Msa0371430-mRNA-1:exon:14829;Parent=Msa0371430-mRNA-1
chr3_1 exon 69583555 69583568 69583555 ID=Msa0371430-mRNA-1:exon:14830;Parent=Msa0371430-mRNA-1
chr3_1 exon 69583671 69583721 69583671 ID=Msa0371430-mRNA-1:exon:14831;Parent=Msa0371430-mRNA-1
chr3_1 exon 69583877 69585332 69583877 ID=Msa0371430-mRNA-1:exon:14832;Parent=Msa0371430-mRNA-1
chr3_1 five_prime_UTR 69582904 69583057 69582904 ID=Msa0371430-mRNA-1:five_prime_utr;Parent=Msa0371430-mRNA-1
chr3_1 CDS 69583058 69583294 69583058 ID=Msa0371430-mRNA-1:cds;Parent=Msa0371430-mRNA-1
chr3_1 CDS 69583405 69583435 69583405 ID=Msa0371430-mRNA-1:cds;Parent=Msa0371430-mRNA-1
chr3_1 CDS 69583555 69583568 69583555 ID=Msa0371430-mRNA-1:cds;Parent=Msa0371430-mRNA-1
chr3_1 CDS 69583671 69583721 69583671 ID=Msa0371430-mRNA-1:cds;Parent=Msa0371430-mRNA-1
chr3_1 CDS 69583877 69584008 69583877 ID=Msa0371430-mRNA-1:cds;Parent=Msa0371430-mRNA-1
chr3_1 three_prime_UTR 69584009 69585332 69584009 ID=Msa0371430-mRNA-1:three_prime_utr;Parent=Msa0371430-mRNA-1
Gene Sequence

>Msa0371430

ATGCAATCTCTATCACTGAAACTCAGCAAGAGGCTCTCCAATTCTTCGCATCCTCATTGGAGAATCTCATCAAACTTCATCGCTCACGCTTCAACCACCTCTTCCTCCCCTTCCCCACCGTCATCTCCGATCTCCGCCGCCGCAAACGCCACCACTACCGCCTCCAATCTCAACAACCTCCTCACTGCTCCATGGTCCGCTTCTCAAACCCGCGGATTCACTTTCTCTGGATCTGATGTTAGAGTTGGAAATTTGATTGAAAATCGAGGTCGCGCGTATGAGGTTCTTAGACAATATCACTCTCTGGAAGGAACAGGAAAAGCTGCTATCAAGTTTCAGGTGGGAATGTTGAGTTGTTGGTGCATGTGTATAAATTTAACTGCCTTTGATAAGGAAAAGAGAATTATTAGGGTGAATATTAAGCGTGTATTTGGACGAGCTTTGTCAAACGTGACATTGAATTAA
Protein sequence

>Msa0371430

MQSLSLKLSKRLSNSSHPHWRISSNFIAHASTTSSSPSPPSSPISAAANATTTASNLNNLLTAPWSASQTRGFTFSGSDVRVGNLIENRGRAYEVLRQYHSLEGTGKAAIKFQVGMLSCWCMCINLTAFDKEKRIIRVNIKRVFGRALSNVTLN*