AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0465670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465670 MtrunA17_Chr3g0118201 95.536 224 10 0 1 224 1 224 1.14e-139 390
Msa0465670 MtrunA17_Chr3g0121231 48.611 72 33 1 41 112 32 99 4.87e-13 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0465670 AT2G46505.1 58.140 43 18 0 177 219 106 148 7.61e-12 61.6

Find 84 sgRNAs with CRISPR-Local

Find 380 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCATGATTTGTCAAGTTAA+TGG 0.183545 3_3:-66112151 Msa0465670:three_prime_UTR
CGGCAAATTTCTTCATATTC+TGG 0.190096 3_3:-66112437 Msa0465670:CDS
AAATGCATTGTTAAATGTTT+TGG 0.196737 3_3:-66112040 Msa0465670:three_prime_UTR
AGCTGTTCTCTCTTTGTCTT+TGG 0.203709 3_3:+66112522 None:intergenic
TGCAGGGATCGAAGAGATTT+TGG 0.216640 3_3:-66112406 Msa0465670:CDS
TAGCGATGAAGAAAAGTTTA+TGG 0.222754 3_3:+66117113 None:intergenic
GTTCCTGATAATAGCAATTA+AGG 0.263545 3_3:-66112328 Msa0465670:CDS
CGTCCTTAATTGCTATTATC+AGG 0.277657 3_3:+66112325 None:intergenic
AGTGAGGAGGTTGTTGAGAT+TGG 0.306031 3_3:+66116834 None:intergenic
TGTATGATTGGGATAGAGTT+TGG 0.336016 3_3:-66112283 Msa0465670:exon
CGGAGATGACGGTGGGGAAG+GGG 0.343868 3_3:+66116891 None:intergenic
GCGAGCAATGAATAGGCATT+TGG 0.353068 3_3:+66112459 None:intergenic
CGGTGGGGAAGGGGAGGAAG+AGG 0.363507 3_3:+66116900 None:intergenic
CAAATTCCCTGGTCATTTCA+TGG 0.376260 3_3:+66112370 None:intergenic
CCAATTCTTCGCATCCTCAT+TGG 0.380648 3_3:-66116960 Msa0465670:CDS
CCAATGAGGATGCGAAGAAT+TGG 0.384540 3_3:+66116960 None:intergenic
AATCAACTAACACGTGTCTT+AGG 0.392250 3_3:-66117147 Msa0465670:five_prime_UTR
GTATGATTGGGATAGAGTTT+GGG 0.393809 3_3:-66112282 Msa0465670:exon
AGCGATGAAGAAAAGTTTAT+GGG 0.395276 3_3:+66117114 None:intergenic
TGGGGAAGGGGAGGAAGAGG+TGG 0.403774 3_3:+66116903 None:intergenic
ACCCGCGGATTCACTTTCTC+TGG 0.404945 3_3:-66116790 Msa0465670:CDS
GTTGAGATTGGAGGCGGTAG+TGG 0.410912 3_3:+66116846 None:intergenic
CGAGCAATGAATAGGCATTT+GGG 0.430118 3_3:+66112460 None:intergenic
TCGGAGATGACGGTGGGGAA+GGG 0.440083 3_3:+66116890 None:intergenic
AGATGACGGTGGGGAAGGGG+AGG 0.442459 3_3:+66116894 None:intergenic
AATTTGTCTTGATTTCTCTC+AGG 0.443514 3_3:-66112353 Msa0465670:CDS
ATCGGAGATGACGGTGGGGA+AGG 0.452043 3_3:+66116889 None:intergenic
GGCGGTAGTGGTGGAGTTTG+CGG 0.457087 3_3:+66116858 None:intergenic
ATTTGCCGCGAGCAATGAAT+AGG 0.468381 3_3:+66112452 None:intergenic
ATTTGGGTATATTAAAAGAA+GGG 0.471611 3_3:+66112476 None:intergenic
AGTGGTGGAGTTTGCGGCGG+CGG 0.474562 3_3:+66116864 None:intergenic
TATCACTCTCTGGAAGGAAC+AGG 0.475953 3_3:-66116372 Msa0465670:CDS
GAGTTTGCGGCGGCGGAGAT+CGG 0.476075 3_3:+66116871 None:intergenic
CATTTGGGTATATTAAAAGA+AGG 0.482381 3_3:+66112475 None:intergenic
CCGGAGAGGTTGATATCAAA+AGG 0.484593 3_3:-66114703 Msa0465670:intron
AACAGGAAAAGCTGCTATCA+AGG 0.492631 3_3:-66116355 Msa0465670:intron
ATATTCTGGCACATAAATGC+AGG 0.494010 3_3:-66112423 Msa0465670:CDS
GATTTCAGGTCGCGCGTATG+AGG 0.501849 3_3:-66116508 Msa0465670:intron
TTTCTCAAGTTTGCTCCTCA+AGG 0.503436 3_3:+66112229 None:intergenic
TCTTAGACAATATCACTCTC+TGG 0.504023 3_3:-66116382 Msa0465670:CDS
CGGAGATCGGAGATGACGGT+GGG 0.504404 3_3:+66116884 None:intergenic
GAGGTTGTTGAGATTGGAGG+CGG 0.509019 3_3:+66116840 None:intergenic
AACAGTGGATTGAGGAATCA+AGG 0.513744 3_3:-66112546 Msa0465670:CDS
GTTCCACCTCACACCGTAGC+TGG 0.515798 3_3:-66114746 Msa0465670:CDS
TGTGATAGATAATAAAGAGT+TGG 0.533499 3_3:-66112065 Msa0465670:three_prime_UTR
GAGGAGGTTGTTGAGATTGG+AGG 0.537669 3_3:+66116837 None:intergenic
CTCTCCGGCAGTAGCAGCTG+TGG 0.539981 3_3:+66114718 None:intergenic
TATTCCACAGCTGCTACTGC+CGG 0.544998 3_3:-66114722 Msa0465670:CDS
CACACCTTCGAAAATGAAGA+TGG 0.550125 3_3:+66117068 None:intergenic
TTGTCTCTTCTCAAACATAG+AGG 0.559237 3_3:-66112191 Msa0465670:three_prime_UTR
TTTGGGTATATTAAAAGAAG+GGG 0.565957 3_3:+66112477 None:intergenic
CTCAAGGAGCTCTTATTGCA+AGG 0.567871 3_3:+66112245 None:intergenic
AGCTGTGGAATAACCAGCTA+CGG 0.568613 3_3:+66114733 None:intergenic
AGAAATCAAGACAAATTCCC+TGG 0.574370 3_3:+66112359 None:intergenic
ACGTTCACCATGAAATGACC+AGG 0.579884 3_3:-66112377 Msa0465670:CDS
ATCTATAGGGAGCGAAACAG+TGG 0.580269 3_3:-66112561 Msa0465670:intron
GTATAAACCACGATTAGCAA+CGG 0.583437 3_3:+66112100 None:intergenic
GGAAATTTGATTGAAAATCG+AGG 0.584509 3_3:-66116641 Msa0465670:intron
ACAACCTCCTCACTGCTCCA+TGG 0.587232 3_3:-66116825 Msa0465670:CDS
GAGATTGGAGGCGGTAGTGG+TGG 0.591023 3_3:+66116849 None:intergenic
CACAGCTGCTACTGCCGGAG+AGG 0.592793 3_3:-66114717 Msa0465670:CDS
ATATATTCCGTTGCTAATCG+TGG 0.593035 3_3:-66112107 Msa0465670:three_prime_UTR
ATCCAGAGAAAGTGAATCCG+CGG 0.593591 3_3:+66116788 None:intergenic
CGGGTTTGAGAAGCGGACCA+TGG 0.595025 3_3:+66116808 None:intergenic
GGGAGCGAAACAGTGGATTG+AGG 0.596182 3_3:-66112554 Msa0465670:CDS
GCGGCGGAGATCGGAGATGA+CGG 0.602075 3_3:+66116880 None:intergenic
GCGGAGATCGGAGATGACGG+TGG 0.606744 3_3:+66116883 None:intergenic
TATCACTGAAACTCAGCAAG+AGG 0.610373 3_3:-66116987 Msa0465670:CDS
GAATCCGCGGGTTTGAGAAG+CGG 0.621886 3_3:+66116801 None:intergenic
TGATTGGGATAGAGTTTGGG+TGG 0.628702 3_3:-66112279 Msa0465670:three_prime_UTR
AGACAATATCACTCTCTGGA+AGG 0.632187 3_3:-66116378 Msa0465670:CDS
TATTCTGGCACATAAATGCA+GGG 0.633313 3_3:-66112422 Msa0465670:CDS
TAACCAGCTACGGTGTGAGG+TGG 0.634223 3_3:+66114743 None:intergenic
TCCAGAGAAAGTGAATCCGC+GGG 0.634974 3_3:+66116789 None:intergenic
GGAGATCGGAGATGACGGTG+GGG 0.638493 3_3:+66116885 None:intergenic
TTTGATGAGATTCTCCAATG+AGG 0.640483 3_3:+66116946 None:intergenic
CGGACCATGGAGCAGTGAGG+AGG 0.665229 3_3:+66116821 None:intergenic
AAATGCCTATTCATTGCTCG+CGG 0.673783 3_3:-66112457 Msa0465670:CDS
TGGTCCGCTTCTCAAACCCG+CGG 0.679979 3_3:-66116805 Msa0465670:CDS
GAATAACCAGCTACGGTGTG+AGG 0.680821 3_3:+66114740 None:intergenic
AAGCGGACCATGGAGCAGTG+AGG 0.702686 3_3:+66116818 None:intergenic
GGTAGTGGTGGAGTTTGCGG+CGG 0.704581 3_3:+66116861 None:intergenic
CTTGCAATAAGAGCTCCTTG+AGG 0.710263 3_3:-66112244 Msa0465670:three_prime_UTR
CGTTCACCATGAAATGACCA+GGG 0.717319 3_3:-66112376 Msa0465670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAAATATTATTATAT+AGG - chr3_3:66114689-66114708 Msa0465670:intron 0.0%
!! TTGAGTATATAAAATTAATT+TGG - chr3_3:66113143-66113162 Msa0465670:intron 10.0%
!!! AATTTTAATAACAATTTACT+TGG - chr3_3:66113768-66113787 Msa0465670:intron 10.0%
!!! GTATATAAAATTAATTTGGT+TGG - chr3_3:66113147-66113166 Msa0465670:intron 15.0%
!! ACACTAACATTTAAAAAAAA+GGG + chr3_3:66114119-66114138 None:intergenic 15.0%
!! TTTCAAAATTATAGTTTACA+TGG + chr3_3:66114629-66114648 None:intergenic 15.0%
!! TATAATACAAATGACAAAAA+TGG + chr3_3:66114670-66114689 None:intergenic 15.0%
!! AAATATTATTATATAGGAAC+AGG - chr3_3:66114695-66114714 Msa0465670:intron 15.0%
!! TTAACAACAATAGTATATAA+TGG + chr3_3:66114961-66114980 None:intergenic 15.0%
!!! ATTCATTTATTTTATGAAGA+AGG + chr3_3:66115392-66115411 None:intergenic 15.0%
!!! AAATTTTGTATTTGTATGAT+TGG - chr3_3:66116893-66116912 Msa0465670:CDS 15.0%
!!! AATTTTGTATTTGTATGATT+GGG - chr3_3:66116894-66116913 Msa0465670:CDS 15.0%
!! AGAAATAATGTGTTAATACT+TGG + chr3_3:66113410-66113429 None:intergenic 20.0%
!! AGAACAATAAGAAAATGTTT+GGG + chr3_3:66113813-66113832 None:intergenic 20.0%
!! TAGAACAATAAGAAAATGTT+TGG + chr3_3:66113814-66113833 None:intergenic 20.0%
!! CACACTAACATTTAAAAAAA+AGG + chr3_3:66114120-66114139 None:intergenic 20.0%
!!! AAGCATTTGATTTGTAAAAT+TGG - chr3_3:66114527-66114546 Msa0465670:intron 20.0%
!!! TCAATTTTTTGTATTCATTC+TGG - chr3_3:66115767-66115786 Msa0465670:intron 20.0%
!!! TTTGTTGTTGTAATGTATTA+TGG - chr3_3:66116031-66116050 Msa0465670:intron 20.0%
!!! TTGTTGTTGTAATGTATTAT+GGG - chr3_3:66116032-66116051 Msa0465670:intron 20.0%
!!! TCTTAATTCTTGAATTTGTT+TGG - chr3_3:66116480-66116499 Msa0465670:intron 20.0%
!! ATTTGGGTATATTAAAAGAA+GGG + chr3_3:66116715-66116734 None:intergenic 20.0%
!!! AAATGCATTGTTAAATGTTT+TGG - chr3_3:66117148-66117167 Msa0465670:five_prime_UTR 20.0%
!!! TTTTTTTTCTTTTCTGTGAG+AGG + chr3_3:66112170-66112189 None:intergenic 25.0%
! AATTCATTTCTTCAATTGCA+TGG - chr3_3:66112436-66112455 Msa0465670:CDS 25.0%
! TCGTCTATTTATTATAGTGA+TGG - chr3_3:66112966-66112985 Msa0465670:intron 25.0%
! CGTCTATTTATTATAGTGAT+GGG - chr3_3:66112967-66112986 Msa0465670:intron 25.0%
! ACAAGGAAAAGAGAATTATT+AGG - chr3_3:66113065-66113084 Msa0465670:intron 25.0%
! CAAGGAAAAGAGAATTATTA+GGG - chr3_3:66113066-66113085 Msa0465670:intron 25.0%
!!! ATGTTTGGATGTTTTTACTT+TGG - chr3_3:66113195-66113214 Msa0465670:intron 25.0%
!!! CAATGGAAAAATTTTGTTTC+CGG + chr3_3:66113371-66113390 None:intergenic 25.0%
!!! ACATTATTTCTGTCATTCAA+AGG - chr3_3:66113419-66113438 Msa0465670:intron 25.0%
!! GTTTTGTAGCAATTATGTTT+AGG - chr3_3:66113508-66113527 Msa0465670:intron 25.0%
! ATGTTTAGGTATAGTCATAT+TGG - chr3_3:66113522-66113541 Msa0465670:intron 25.0%
! TGTTTAGGTATAGTCATATT+GGG - chr3_3:66113523-66113542 Msa0465670:intron 25.0%
!! ATAGTCATATTGGGAATTTT+TGG - chr3_3:66113532-66113551 Msa0465670:intron 25.0%
!! TAGTCATATTGGGAATTTTT+GGG - chr3_3:66113533-66113552 Msa0465670:intron 25.0%
! ATCATGTTGTCTAATAAAGA+GGG + chr3_3:66113560-66113579 None:intergenic 25.0%
! GAACAATAAGAAAATGTTTG+GGG + chr3_3:66113812-66113831 None:intergenic 25.0%
! TTAAAAAATGCAAACCAAGT+AGG + chr3_3:66113893-66113912 None:intergenic 25.0%
! TGACAAATGTTAGTATGTTA+AGG - chr3_3:66113923-66113942 Msa0465670:intron 25.0%
! GACAAATGTTAGTATGTTAA+GGG - chr3_3:66113924-66113943 Msa0465670:intron 25.0%
! ACAAATGTTAGTATGTTAAG+GGG - chr3_3:66113925-66113944 Msa0465670:intron 25.0%
! CTAACATTTAAAAAAAAGGG+CGG + chr3_3:66114116-66114135 None:intergenic 25.0%
! TAATGTTAAATGCTAAGTCT+TGG - chr3_3:66114392-66114411 Msa0465670:intron 25.0%
! AATACAAATGACAAAAATGG+TGG + chr3_3:66114667-66114686 None:intergenic 25.0%
!! ATTGTAGATGAAGTTCATTT+TGG + chr3_3:66114748-66114767 None:intergenic 25.0%
! AGTTTCTTAGGATAATGTTA+GGG + chr3_3:66114857-66114876 None:intergenic 25.0%
!! ATAAAGTTGGTTAATACGTT+GGG + chr3_3:66115032-66115051 None:intergenic 25.0%
!! AATCACTTCTTATTTCAATG+CGG + chr3_3:66115055-66115074 None:intergenic 25.0%
! ATTGAAATAAGAAGTGATTG+TGG - chr3_3:66115056-66115075 Msa0465670:intron 25.0%
!! TAAGGAAAATTTAGTCTTCT+GGG + chr3_3:66115221-66115240 None:intergenic 25.0%
!! ATAAGGAAAATTTAGTCTTC+TGG + chr3_3:66115222-66115241 None:intergenic 25.0%
!! AGAAGACTAAATTTTCCTTA+TGG - chr3_3:66115221-66115240 Msa0465670:intron 25.0%
!! GAAGACTAAATTTTCCTTAT+GGG - chr3_3:66115222-66115241 Msa0465670:intron 25.0%
!!! AAAGAGTTTTATGACTATGA+TGG + chr3_3:66115269-66115288 None:intergenic 25.0%
!!! CATTTATTTTATGAAGAAGG+TGG + chr3_3:66115389-66115408 None:intergenic 25.0%
! TATCTATTTATGATGTGATG+AGG + chr3_3:66115420-66115439 None:intergenic 25.0%
! TATAGAGAAAACTCTAGATA+TGG - chr3_3:66115574-66115593 Msa0465670:intron 25.0%
! TATGCAAAATTGCTATATGT+TGG + chr3_3:66115687-66115706 None:intergenic 25.0%
!! ATTTAAAACTTACAGCATAG+AGG - chr3_3:66115866-66115885 Msa0465670:intron 25.0%
! TGTTGTTGTAATGTATTATG+GGG - chr3_3:66116033-66116052 Msa0465670:intron 25.0%
! TCAACATTTCAATGAAATAG+TGG + chr3_3:66116092-66116111 None:intergenic 25.0%
! CTATTTCATTGAAATGTTGA+TGG - chr3_3:66116092-66116111 Msa0465670:intron 25.0%
! TATCTACAGAATATTAACCA+TGG + chr3_3:66116148-66116167 None:intergenic 25.0%
! ATGGTTAATATTCTGTAGAT+AGG - chr3_3:66116147-66116166 Msa0465670:intron 25.0%
!! AAACACATAATGACTTGTAT+TGG + chr3_3:66116264-66116283 None:intergenic 25.0%
!! ATACAAGTCATTATGTGTTT+TGG - chr3_3:66116264-66116283 Msa0465670:intron 25.0%
! TTTGCGCTTAACTTAATATT+TGG - chr3_3:66116420-66116439 Msa0465670:intron 25.0%
! TTTGTTTATGTAACGCTAAA+AGG - chr3_3:66116444-66116463 Msa0465670:intron 25.0%
! TTGTTTATGTAACGCTAAAA+GGG - chr3_3:66116445-66116464 Msa0465670:intron 25.0%
!! ATTTCCTTTTTGATCTGATA+TGG - chr3_3:66116542-66116561 Msa0465670:intron 25.0%
! TTTGGGTATATTAAAAGAAG+GGG + chr3_3:66116714-66116733 None:intergenic 25.0%
! CATTTGGGTATATTAAAAGA+AGG + chr3_3:66116716-66116735 None:intergenic 25.0%
!! TTCATGATTTGTCAAGTTAA+TGG - chr3_3:66117037-66117056 Msa0465670:five_prime_UTR 25.0%
! TGTGATAGATAATAAAGAGT+TGG - chr3_3:66117123-66117142 Msa0465670:five_prime_UTR 25.0%
AGCGATGAAGAAAAGTTTAT+GGG + chr3_3:66112077-66112096 None:intergenic 30.0%
TAGCGATGAAGAAAAGTTTA+TGG + chr3_3:66112078-66112097 None:intergenic 30.0%
GGAAATTTGATTGAAAATCG+AGG - chr3_3:66112547-66112566 Msa0465670:CDS 30.0%
AGTTGCTGATAGTTTGAATT+TGG - chr3_3:66112618-66112637 Msa0465670:intron 30.0%
TTGAATTTGGATTTGTGTTC+TGG - chr3_3:66112631-66112650 Msa0465670:intron 30.0%
! GAATGTATATGATCGATTTC+AGG - chr3_3:66112666-66112685 Msa0465670:intron 30.0%
TGTTAATCTAACTCTGTGTT+TGG - chr3_3:66112763-66112782 Msa0465670:intron 30.0%
TTGGTTATCTAAACTGTATC+AGG - chr3_3:66112782-66112801 Msa0465670:intron 30.0%
! TCTGATTTGTAGTTTCAAGT+GGG - chr3_3:66112998-66113017 Msa0465670:intron 30.0%
AAATTTAACTGCCTTTGACA+AGG - chr3_3:66113048-66113067 Msa0465670:intron 30.0%
! AATTCTCTTTTCCTTGTCAA+AGG + chr3_3:66113062-66113081 None:intergenic 30.0%
GTGAATATTAAGCGTGTATT+TGG - chr3_3:66113088-66113107 Msa0465670:intron 30.0%
TTATGACTCATAGTTAAGCA+AGG - chr3_3:66113279-66113298 Msa0465670:intron 30.0%
TATGACTCATAGTTAAGCAA+GGG - chr3_3:66113280-66113299 Msa0465670:intron 30.0%
!!! ATGTTTTGACTTCCAATTGA+AGG - chr3_3:66113481-66113500 Msa0465670:intron 30.0%
CATCATGTTGTCTAATAAAG+AGG + chr3_3:66113561-66113580 None:intergenic 30.0%
CAAATGTTAGTATGTTAAGG+GGG - chr3_3:66113926-66113945 Msa0465670:intron 30.0%
TAAAGGAGTTAAGGAGTTAA+AGG + chr3_3:66114193-66114212 None:intergenic 30.0%
CATAGTGTAGGTCATTAAAA+TGG + chr3_3:66114332-66114351 None:intergenic 30.0%
ACGTATTCTATATTATCTGC+TGG - chr3_3:66114369-66114388 Msa0465670:intron 30.0%
GTTGATATCAAAAGGTTAGT+TGG - chr3_3:66114493-66114512 Msa0465670:intron 30.0%
TGATTCTGTTAGCATTCTTT+AGG - chr3_3:66114601-66114620 Msa0465670:intron 30.0%
GATTCTGTTAGCATTCTTTA+GGG - chr3_3:66114602-66114621 Msa0465670:intron 30.0%
ATTCTGTTAGCATTCTTTAG+GGG - chr3_3:66114603-66114622 Msa0465670:intron 30.0%
! CCATTTAGCATTTTCTCATT+GGG + chr3_3:66114820-66114839 None:intergenic 30.0%
! ACCATTTAGCATTTTCTCAT+TGG + chr3_3:66114821-66114840 None:intergenic 30.0%
GAGTTTCTTAGGATAATGTT+AGG + chr3_3:66114858-66114877 None:intergenic 30.0%
CAACAATAGTATATAATGGC+AGG + chr3_3:66114957-66114976 None:intergenic 30.0%
! GATAAAGTTGGTTAATACGT+TGG + chr3_3:66115033-66115052 None:intergenic 30.0%
TATTTCAATGCGGATAAAGT+TGG + chr3_3:66115045-66115064 None:intergenic 30.0%
! AACATTTTGGATACAGTGAA+AGG + chr3_3:66115142-66115161 None:intergenic 30.0%
!! CTGCTTTTGGATTAACTTAA+AGG + chr3_3:66115362-66115381 None:intergenic 30.0%
!! TTATTTTATGAAGAAGGTGG+TGG + chr3_3:66115386-66115405 None:intergenic 30.0%
GAGTTTAAACTTGAATTACG+CGG - chr3_3:66115507-66115526 Msa0465670:intron 30.0%
! TTTTCTCTATACAGAAAGAC+AGG + chr3_3:66115565-66115584 None:intergenic 30.0%
!!! TCAAAAGCATTTTCTTCTTG+CGG + chr3_3:66115600-66115619 None:intergenic 30.0%
TTGGAAAGTGAACTTAAAGA+TGG + chr3_3:66115725-66115744 None:intergenic 30.0%
GTTGTTGTAATGTATTATGG+GGG - chr3_3:66116034-66116053 Msa0465670:intron 30.0%
! TTCATTGAAATGTTGATGGA+TGG - chr3_3:66116096-66116115 Msa0465670:intron 30.0%
CATGGTGGTATATAAAATCA+AGG + chr3_3:66116130-66116149 None:intergenic 30.0%
! CTTGATTTTATATACCACCA+TGG - chr3_3:66116128-66116147 Msa0465670:intron 30.0%
! CTTGTTATCAAGAAAATGAG+TGG + chr3_3:66116308-66116327 None:intergenic 30.0%
AAAGAAAAACCAGCAATTGA+AGG + chr3_3:66116342-66116361 None:intergenic 30.0%
TGTTTATGTAACGCTAAAAG+GGG - chr3_3:66116446-66116465 Msa0465670:intron 30.0%
AATGCCATATCAGATCAAAA+AGG + chr3_3:66116549-66116568 None:intergenic 30.0%
GATATGGCATTTAGTAGATA+TGG - chr3_3:66116558-66116577 Msa0465670:intron 30.0%
ACCAATGGTTAAGGATAAAT+GGG + chr3_3:66116603-66116622 None:intergenic 30.0%
AACCAATGGTTAAGGATAAA+TGG + chr3_3:66116604-66116623 None:intergenic 30.0%
AATTTGTCTTGATTTCTCTC+AGG - chr3_3:66116835-66116854 Msa0465670:CDS 30.0%
GTTCCTGATAATAGCAATTA+AGG - chr3_3:66116860-66116879 Msa0465670:CDS 30.0%
AGAGACAAAAACTATTCAAC+AGG + chr3_3:66116985-66117004 None:intergenic 30.0%
! ATGGTTGAATTGTATTTTGC+AGG - chr3_3:66117056-66117075 Msa0465670:five_prime_UTR 30.0%
AATCAACTAACACGTGTCTT+AGG - chr3_3:66112041-66112060 Msa0465670:three_prime_UTR 35.0%
TTTGATGAGATTCTCCAATG+AGG + chr3_3:66112245-66112264 None:intergenic 35.0%
!!! ACTGTTTCTACTTGTTTTGC+AGG - chr3_3:66112516-66112535 Msa0465670:CDS 35.0%
AATTTGGATTTGTGTTCTGG+TGG - chr3_3:66112634-66112653 Msa0465670:intron 35.0%
TCTTAGACAATATCACTCTC+TGG - chr3_3:66112806-66112825 Msa0465670:intron 35.0%
CTTCCACATTCTTATATACC+TGG - chr3_3:66112881-66112900 Msa0465670:intron 35.0%
TTCTTATATACCTGGCTGAA+TGG - chr3_3:66112889-66112908 Msa0465670:intron 35.0%
CGAAGAAACATAACATGCAA+CGG + chr3_3:66112949-66112968 None:intergenic 35.0%
! GTCTGATTTGTAGTTTCAAG+TGG - chr3_3:66112997-66113016 Msa0465670:intron 35.0%
! TTGGTTGGTATTGAGTTTGA+AGG - chr3_3:66113162-66113181 Msa0465670:intron 35.0%
! TGGTTGGTATTGAGTTTGAA+GGG - chr3_3:66113163-66113182 Msa0465670:intron 35.0%
!! AAAGGAACTGTTATTTCCAG+AGG - chr3_3:66113437-66113456 Msa0465670:intron 35.0%
TACAAAACCTCTCCTTCAAT+TGG + chr3_3:66113496-66113515 None:intergenic 35.0%
TATCAAGGCATACCATATTG+TGG + chr3_3:66113612-66113631 None:intergenic 35.0%
GCAGATGAAGTACAATATCA+AGG + chr3_3:66113627-66113646 None:intergenic 35.0%
!! AATGTTTGGGGTTAACTTGT+TGG + chr3_3:66113800-66113819 None:intergenic 35.0%
TGTTCTATCTGTACATTTCC+TGG - chr3_3:66113827-66113846 Msa0465670:intron 35.0%
TTCATTGGGATGTATCTACA+AGG - chr3_3:66113859-66113878 Msa0465670:intron 35.0%
AACCTCTTGTGTAAAAAGCA+GGG - chr3_3:66114015-66114034 Msa0465670:intron 35.0%
GTAAGGGTTTAAAGGAGTTA+AGG + chr3_3:66114202-66114221 None:intergenic 35.0%
AACTCCTTTAAACCCTTACT+TGG - chr3_3:66114203-66114222 Msa0465670:intron 35.0%
CAAACCAAGTAAGGGTTTAA+AGG + chr3_3:66114210-66114229 None:intergenic 35.0%
TCTCAATGCAAACCAAGTAA+GGG + chr3_3:66114218-66114237 None:intergenic 35.0%
ATCTCAATGCAAACCAAGTA+AGG + chr3_3:66114219-66114238 None:intergenic 35.0%
TCAGCTAGAAAACATAGTGT+AGG + chr3_3:66114344-66114363 None:intergenic 35.0%
! GTAGATGAAGTTCATTTTGG+AGG + chr3_3:66114745-66114764 None:intergenic 35.0%
!! CATTGGGTTAGTTTGTATTG+AGG + chr3_3:66114804-66114823 None:intergenic 35.0%
CCCAATGAGAAAATGCTAAA+TGG - chr3_3:66114817-66114836 Msa0465670:intron 35.0%
! CTTTCTTTGCAGGTATTTTG+TGG + chr3_3:66114884-66114903 None:intergenic 35.0%
AATACCTGCAAAGAAAGTGA+TGG - chr3_3:66114887-66114906 Msa0465670:intron 35.0%
GTATATAATGGCAGGCATTA+AGG + chr3_3:66114949-66114968 None:intergenic 35.0%
TGGTTTATGTAAGGTGGTAA+AGG + chr3_3:66114995-66115014 None:intergenic 35.0%
AAATATCTTGCATTGCCTGA+AGG - chr3_3:66115085-66115104 Msa0465670:intron 35.0%
GTTATGTCTATTACACCTTC+AGG + chr3_3:66115103-66115122 None:intergenic 35.0%
!! TACAGTGAAAGGTGTCAAAT+TGG + chr3_3:66115131-66115150 None:intergenic 35.0%
TTATTCAACCAATGCTGGAT+TGG + chr3_3:66115195-66115214 None:intergenic 35.0%
! TATGATGGAAACTTAGTAGG+TGG + chr3_3:66115254-66115273 None:intergenic 35.0%
! GACTATGATGGAAACTTAGT+AGG + chr3_3:66115257-66115276 None:intergenic 35.0%
TGGATTAACTTAAAGGTCGT+GGG + chr3_3:66115355-66115374 None:intergenic 35.0%
TTGGATTAACTTAAAGGTCG+TGG + chr3_3:66115356-66115375 None:intergenic 35.0%
! ATTCTGGCTAGTTATTGTGA+TGG - chr3_3:66115783-66115802 Msa0465670:intron 35.0%
TGGTTATTCTCTTAAGTGAC+AGG - chr3_3:66115803-66115822 Msa0465670:intron 35.0%
GGTTATTCTCTTAAGTGACA+GGG - chr3_3:66115804-66115823 Msa0465670:intron 35.0%
GTTATTCTCTTAAGTGACAG+GGG - chr3_3:66115805-66115824 Msa0465670:intron 35.0%
! TGGCTTTCTAATTTGTGTTC+TGG - chr3_3:66115839-66115858 Msa0465670:intron 35.0%
!! TTCCTAGCATAGGATTAGTT+TGG - chr3_3:66115931-66115950 Msa0465670:intron 35.0%
! TAGTTTGGTGGATCGAAATA+TGG - chr3_3:66115946-66115965 Msa0465670:intron 35.0%
TTGTAATGTATTATGGGGGT+TGG - chr3_3:66116038-66116057 Msa0465670:intron 35.0%
CTACAGAATATTAACCATGG+TGG + chr3_3:66116145-66116164 None:intergenic 35.0%
CAGCCTGAACTTTAACATTT+AGG - chr3_3:66116220-66116239 Msa0465670:intron 35.0%
CAGCCTAAATGTTAAAGTTC+AGG + chr3_3:66116226-66116245 None:intergenic 35.0%
! CACATAATGACTTGTATTGG+AGG + chr3_3:66116261-66116280 None:intergenic 35.0%
!! AGGCAATTAGCTTTGATGTA+TGG - chr3_3:66116368-66116387 Msa0465670:CDS 35.0%
!! CAATTAGCTTTGATGTATGG+AGG - chr3_3:66116371-66116390 Msa0465670:CDS 35.0%
GGCATTTAGTAGATATGGTT+TGG - chr3_3:66116563-66116582 Msa0465670:intron 35.0%
! GTAGATATGGTTTGGATGTT+TGG - chr3_3:66116571-66116590 Msa0465670:intron 35.0%
TCCCATTTATCCTTAACCAT+TGG - chr3_3:66116599-66116618 Msa0465670:intron 35.0%
TAGATGACAACCAATGGTTA+AGG + chr3_3:66116612-66116631 None:intergenic 35.0%
! AACCATTGGTTGTCATCTAT+AGG - chr3_3:66116613-66116632 Msa0465670:intron 35.0%
! ACCATTGGTTGTCATCTATA+GGG - chr3_3:66116614-66116633 Msa0465670:intron 35.0%
CGGCAAATTTCTTCATATTC+TGG - chr3_3:66116751-66116770 Msa0465670:intron 35.0%
ATATTCTGGCACATAAATGC+AGG - chr3_3:66116765-66116784 Msa0465670:intron 35.0%
TATTCTGGCACATAAATGCA+GGG - chr3_3:66116766-66116785 Msa0465670:intron 35.0%
AGAAATCAAGACAAATTCCC+TGG + chr3_3:66116832-66116851 None:intergenic 35.0%
! CGTCCTTAATTGCTATTATC+AGG + chr3_3:66116866-66116885 None:intergenic 35.0%
TGTATGATTGGGATAGAGTT+TGG - chr3_3:66116905-66116924 Msa0465670:CDS 35.0%
GTATGATTGGGATAGAGTTT+GGG - chr3_3:66116906-66116925 Msa0465670:CDS 35.0%
TTGTCTCTTCTCAAACATAG+AGG - chr3_3:66116997-66117016 Msa0465670:CDS 35.0%
ATATATTCCGTTGCTAATCG+TGG - chr3_3:66117081-66117100 Msa0465670:five_prime_UTR 35.0%
GTATAAACCACGATTAGCAA+CGG + chr3_3:66117091-66117110 None:intergenic 35.0%
! GTCACCATCTTCATTTTCGA+AGG - chr3_3:66112116-66112135 Msa0465670:three_prime_UTR 40.0%
CACACCTTCGAAAATGAAGA+TGG + chr3_3:66112123-66112142 None:intergenic 40.0%
TATCACTGAAACTCAGCAAG+AGG - chr3_3:66112201-66112220 Msa0465670:three_prime_UTR 40.0%
!!! CTTGTTTTGCAGGTTAGAGT+TGG - chr3_3:66112526-66112545 Msa0465670:CDS 40.0%
AGACAATATCACTCTCTGGA+AGG - chr3_3:66112810-66112829 Msa0465670:intron 40.0%
AACAGGAAAAGCTGCTATCA+AGG - chr3_3:66112833-66112852 Msa0465670:intron 40.0%
CAGCCAGGTATATAAGAATG+TGG + chr3_3:66112887-66112906 None:intergenic 40.0%
! AAGTGGGAATGTTGAGTTGT+TGG - chr3_3:66113014-66113033 Msa0465670:intron 40.0%
! GGTTGGTATTGAGTTTGAAG+GGG - chr3_3:66113164-66113183 Msa0465670:intron 40.0%
GTCGCTTAAATCACATTTGC+CGG - chr3_3:66113349-66113368 Msa0465670:intron 40.0%
!! GTTAATACTTGGTGCATGAC+TGG + chr3_3:66113399-66113418 None:intergenic 40.0%
TCACATGAAATGAAAGCCTC+TGG + chr3_3:66113456-66113475 None:intergenic 40.0%
TTGACTTCCAATTGAAGGAG+AGG - chr3_3:66113486-66113505 Msa0465670:intron 40.0%
TATTGTGGAAAGCAGAGACA+GGG + chr3_3:66113597-66113616 None:intergenic 40.0%
ATATTGTGGAAAGCAGAGAC+AGG + chr3_3:66113598-66113617 None:intergenic 40.0%
TGTCTCTGCTTTCCACAATA+TGG - chr3_3:66113597-66113616 Msa0465670:intron 40.0%
TCACCATGTTTCTCGTGAAT+GGG + chr3_3:66113706-66113725 None:intergenic 40.0%
TTCACCATGTTTCTCGTGAA+TGG + chr3_3:66113707-66113726 None:intergenic 40.0%
TCCTGGCTGAAGAATTTCAT+TGG - chr3_3:66113844-66113863 Msa0465670:intron 40.0%
CCTGGCTGAAGAATTTCATT+GGG - chr3_3:66113845-66113864 Msa0465670:intron 40.0%
GTCATGTGACTGAAAAGTCA+CGG - chr3_3:66113975-66113994 Msa0465670:intron 40.0%
TCATGTGACTGAAAAGTCAC+GGG - chr3_3:66113976-66113995 Msa0465670:intron 40.0%
! TTACACAAGAGGTTGTTTCC+AGG + chr3_3:66114009-66114028 None:intergenic 40.0%
CAACCTCTTGTGTAAAAAGC+AGG - chr3_3:66114014-66114033 Msa0465670:intron 40.0%
!!! TACCCTGCTTTTTACACAAG+AGG + chr3_3:66114020-66114039 None:intergenic 40.0%
CTTGTGTAAAAAGCAGGGTA+AGG - chr3_3:66114020-66114039 Msa0465670:intron 40.0%
GCTTCGTACAATACACCAAA+GGG - chr3_3:66114042-66114061 Msa0465670:intron 40.0%
CTAAAGCTCCTGCATATACA+GGG + chr3_3:66114085-66114104 None:intergenic 40.0%
ACTAAAGCTCCTGCATATAC+AGG + chr3_3:66114086-66114105 None:intergenic 40.0%
CATTTAAAAAAAAGGGCGGC+TGG + chr3_3:66114112-66114131 None:intergenic 40.0%
GTTAAGGAGTTAAAGGTCCA+GGG + chr3_3:66114186-66114205 None:intergenic 40.0%
AGTTAAGGAGTTAAAGGTCC+AGG + chr3_3:66114187-66114206 None:intergenic 40.0%
AAGAGTCATACTGCATGCTT+TGG - chr3_3:66114294-66114313 Msa0465670:intron 40.0%
! CCTTTTGATATCAACCTCTC+CGG + chr3_3:66114488-66114507 None:intergenic 40.0%
AACTCATCAATGCGATAGCA+AGG + chr3_3:66114569-66114588 None:intergenic 40.0%
!! GTTCATTTTGGAGGATACCT+TGG + chr3_3:66114736-66114755 None:intergenic 40.0%
TAATGTTAGGGTAGTTGTGG+TGG + chr3_3:66114845-66114864 None:intergenic 40.0%
GGATAATGTTAGGGTAGTTG+TGG + chr3_3:66114848-66114867 None:intergenic 40.0%
!! TTTTGTGGTGGGAGTTTCTT+AGG + chr3_3:66114869-66114888 None:intergenic 40.0%
! CTTTGCAGGTATTTTGTGGT+GGG + chr3_3:66114880-66114899 None:intergenic 40.0%
! TCTTTGCAGGTATTTTGTGG+TGG + chr3_3:66114881-66114900 None:intergenic 40.0%
TAGTCCATCACTTTCTTTGC+AGG + chr3_3:66114894-66114913 None:intergenic 40.0%
!! TAAGGAAAGGGAGTGTTATG+TGG + chr3_3:66114931-66114950 None:intergenic 40.0%
AATGGCAGGCATTAAGGAAA+GGG + chr3_3:66114943-66114962 None:intergenic 40.0%
TAATGGCAGGCATTAAGGAA+AGG + chr3_3:66114944-66114963 None:intergenic 40.0%
! TGAAGCTGGTTTATGTAAGG+TGG + chr3_3:66115001-66115020 None:intergenic 40.0%
! AGGTGAAGCTGGTTTATGTA+AGG + chr3_3:66115004-66115023 None:intergenic 40.0%
GTTGGTTAATACGTTGGGTT+AGG + chr3_3:66115027-66115046 None:intergenic 40.0%
! GGAAAATTTAGTCTTCTGGG+AGG + chr3_3:66115218-66115237 None:intergenic 40.0%
! TCCTTGCGATCAGAAGTTTT+TGG - chr3_3:66115657-66115676 Msa0465670:intron 40.0%
TCCAAAAACTTCTGATCGCA+AGG + chr3_3:66115661-66115680 None:intergenic 40.0%
TTCAGCTTCATAGACTCAGT+TGG + chr3_3:66115744-66115763 None:intergenic 40.0%
GAGTTGCTTATTCCTAGCAT+AGG - chr3_3:66115921-66115940 Msa0465670:intron 40.0%
CACCAAACTAATCCTATGCT+AGG + chr3_3:66115936-66115955 None:intergenic 40.0%
!! CTAGCATAGGATTAGTTTGG+TGG - chr3_3:66115934-66115953 Msa0465670:intron 40.0%
GATCGAAATATGGTGTACGA+TGG - chr3_3:66115956-66115975 Msa0465670:intron 40.0%
! AAGCCTTATCCCACTAAATG+GGG + chr3_3:66116004-66116023 None:intergenic 40.0%
! CAAGCCTTATCCCACTAAAT+GGG + chr3_3:66116005-66116024 None:intergenic 40.0%
AGCAATTGAAGGACTGAAAC+AGG + chr3_3:66116331-66116350 None:intergenic 40.0%
TGTTTCAGTCCTTCAATTGC+TGG - chr3_3:66116330-66116349 Msa0465670:intron 40.0%
!!! GCTGGTTTTTCTTTATCGCT+AGG - chr3_3:66116348-66116367 Msa0465670:intron 40.0%
TCCCTATAGATGACAACCAA+TGG + chr3_3:66116618-66116637 None:intergenic 40.0%
!! AACAGTGGATTGAGGAATCA+AGG - chr3_3:66116642-66116661 Msa0465670:CDS 40.0%
AGCTGTTCTCTCTTTGTCTT+TGG + chr3_3:66116669-66116688 None:intergenic 40.0%
! GAACAGCTGCAGTAACTTTT+AGG + chr3_3:66116692-66116711 None:intergenic 40.0%
CGAGCAATGAATAGGCATTT+GGG + chr3_3:66116731-66116750 None:intergenic 40.0%
AAATGCCTATTCATTGCTCG+CGG - chr3_3:66116731-66116750 Msa0465670:intron 40.0%
CAAATTCCCTGGTCATTTCA+TGG + chr3_3:66116821-66116840 None:intergenic 40.0%
! TTTCTCAAGTTTGCTCCTCA+AGG + chr3_3:66116962-66116981 None:intergenic 40.0%
CCAATGAGGATGCGAAGAAT+TGG + chr3_3:66112231-66112250 None:intergenic 45.0%
CCAATTCTTCGCATCCTCAT+TGG - chr3_3:66112228-66112247 Msa0465670:three_prime_UTR 45.0%
AGTGAGGAGGTTGTTGAGAT+TGG + chr3_3:66112357-66112376 None:intergenic 45.0%
ATCCAGAGAAAGTGAATCCG+CGG + chr3_3:66112403-66112422 None:intergenic 45.0%
! GATTTGTGTTCTGGTGGATG+TGG - chr3_3:66112640-66112659 Msa0465670:intron 45.0%
! TATCACTCTCTGGAAGGAAC+AGG - chr3_3:66112816-66112835 Msa0465670:intron 45.0%
TTAAGCACTACCATTCAGCC+AGG + chr3_3:66112902-66112921 None:intergenic 45.0%
! GAAGGGGTGTGATTCATGTT+TGG - chr3_3:66113180-66113199 Msa0465670:intron 45.0%
!! GTGCATGACTGGTTTCACAA+TGG + chr3_3:66113388-66113407 None:intergenic 45.0%
CTTCCCATTCACGAGAAACA+TGG - chr3_3:66113700-66113719 Msa0465670:intron 45.0%
CCCAATGAAATTCTTCAGCC+AGG + chr3_3:66113848-66113867 None:intergenic 45.0%
ACAAGGCTGTTCATCCTACT+TGG - chr3_3:66113876-66113895 Msa0465670:intron 45.0%
ACAACTTTACCATTGCGCCA+AGG + chr3_3:66113954-66113973 None:intergenic 45.0%
AAAGTCACGGGTTCAATTCC+TGG - chr3_3:66113988-66114007 Msa0465670:intron 45.0%
GGCTTCGTACAATACACCAA+AGG - chr3_3:66114041-66114060 Msa0465670:intron 45.0%
TCGTACAATACACCAAAGGG+TGG - chr3_3:66114045-66114064 Msa0465670:intron 45.0%
AATTGCCAAGATTCGAACCC+TGG - chr3_3:66114166-66114185 Msa0465670:intron 45.0%
AGCTGTGGAATAACCAGCTA+CGG + chr3_3:66114458-66114477 None:intergenic 45.0%
!! CCGGAGAGGTTGATATCAAA+AGG - chr3_3:66114485-66114504 Msa0465670:intron 45.0%
GGAACAGGAAAACACAAGAG+AGG - chr3_3:66114710-66114729 Msa0465670:CDS 45.0%
! GGTTAATACGTTGGGTTAGG+AGG + chr3_3:66115024-66115043 None:intergenic 45.0%
! GCTTGCAAGCTGGAACATTT+TGG + chr3_3:66115155-66115174 None:intergenic 45.0%
AATGTTCCAGCTTGCAAGCA+TGG - chr3_3:66115156-66115175 Msa0465670:intron 45.0%
! CAACCAATGCTGGATTGGAA+AGG + chr3_3:66115190-66115209 None:intergenic 45.0%
GGAGGTTATTCAACCAATGC+TGG + chr3_3:66115200-66115219 None:intergenic 45.0%
GTAGGTGGCTAATACCCATA+AGG + chr3_3:66115239-66115258 None:intergenic 45.0%
TAAAGGTCGTGGGTGATCAA+CGG + chr3_3:66115345-66115364 None:intergenic 45.0%
ATGTAGCGACCCCATTTAGT+GGG - chr3_3:66115992-66116011 Msa0465670:intron 45.0%
! CCAAGCCTTATCCCACTAAA+TGG + chr3_3:66116006-66116025 None:intergenic 45.0%
CCATTTAGTGGGATAAGGCT+TGG - chr3_3:66116003-66116022 Msa0465670:intron 45.0%
TTTAGTGGGATAAGGCTTGG+TGG - chr3_3:66116006-66116025 Msa0465670:intron 45.0%
! ATGTATTATGGGGGTTGGCA+AGG - chr3_3:66116043-66116062 Msa0465670:intron 45.0%
TGGCAAGGATATGATGACCA+TGG - chr3_3:66116058-66116077 Msa0465670:intron 45.0%
CAAGGATATGATGACCATGG+CGG - chr3_3:66116061-66116080 Msa0465670:intron 45.0%
GTTGTGTTACCTTCTTGCCT+AGG - chr3_3:66116183-66116202 Msa0465670:intron 45.0%
!! GTAACGCTAAAAGGGGTATC+AGG - chr3_3:66116453-66116472 Msa0465670:intron 45.0%
ATCTATAGGGAGCGAAACAG+TGG - chr3_3:66116627-66116646 Msa0465670:intron 45.0%
GCGAGCAATGAATAGGCATT+TGG + chr3_3:66116732-66116751 None:intergenic 45.0%
ATTTGCCGCGAGCAATGAAT+AGG + chr3_3:66116739-66116758 None:intergenic 45.0%
! TGCAGGGATCGAAGAGATTT+TGG - chr3_3:66116782-66116801 Msa0465670:intron 45.0%
ACGTTCACCATGAAATGACC+AGG - chr3_3:66116811-66116830 Msa0465670:CDS 45.0%
CGTTCACCATGAAATGACCA+GGG - chr3_3:66116812-66116831 Msa0465670:CDS 45.0%
TGATTGGGATAGAGTTTGGG+TGG - chr3_3:66116909-66116928 Msa0465670:CDS 45.0%
CTCAAGGAGCTCTTATTGCA+AGG + chr3_3:66116946-66116965 None:intergenic 45.0%
CTTGCAATAAGAGCTCCTTG+AGG - chr3_3:66116944-66116963 Msa0465670:CDS 45.0%
GAGGTTGTTGAGATTGGAGG+CGG + chr3_3:66112351-66112370 None:intergenic 50.0%
GAGGAGGTTGTTGAGATTGG+AGG + chr3_3:66112354-66112373 None:intergenic 50.0%
TCCAGAGAAAGTGAATCCGC+GGG + chr3_3:66112402-66112421 None:intergenic 50.0%
!! ATCTGCCCCTCTTGCTTTTG+CGG - chr3_3:66113641-66113660 Msa0465670:intron 50.0%
TTTCCCCCGCAAAAGCAAGA+GGG + chr3_3:66113650-66113669 None:intergenic 50.0%
AGTATGTTAAGGGGGAGCCT+TGG - chr3_3:66113934-66113953 Msa0465670:intron 50.0%
CATATACAGGGTACGGGAAG+GGG + chr3_3:66114073-66114092 None:intergenic 50.0%
GCATATACAGGGTACGGGAA+GGG + chr3_3:66114074-66114093 None:intergenic 50.0%
TGCATATACAGGGTACGGGA+AGG + chr3_3:66114075-66114094 None:intergenic 50.0%
TTCCCGTACCCTGTATATGC+AGG - chr3_3:66114074-66114093 Msa0465670:intron 50.0%
CTCCTGCATATACAGGGTAC+GGG + chr3_3:66114079-66114098 None:intergenic 50.0%
GCTCCTGCATATACAGGGTA+CGG + chr3_3:66114080-66114099 None:intergenic 50.0%
AAGGTCCAGGGTTCGAATCT+TGG + chr3_3:66114174-66114193 None:intergenic 50.0%
!! TGTGTGAAACACTGACTCGC+AGG - chr3_3:66114420-66114439 Msa0465670:intron 50.0%
GAATAACCAGCTACGGTGTG+AGG + chr3_3:66114451-66114470 None:intergenic 50.0%
TATTCCACAGCTGCTACTGC+CGG - chr3_3:66114466-66114485 Msa0465670:intron 50.0%
GGAAAACACAAGAGAGGCCA+AGG - chr3_3:66114716-66114735 Msa0465670:CDS 50.0%
CTGCCTTTCCAATCCAGCAT+TGG - chr3_3:66115184-66115203 Msa0465670:intron 50.0%
AAAGGTCGTGGGTGATCAAC+GGG + chr3_3:66115344-66115363 None:intergenic 50.0%
!! AGAAGGTGGTGGTCTGCTTT+TGG + chr3_3:66115375-66115394 None:intergenic 50.0%
TGACAGGGGAGACATGATTG+TGG - chr3_3:66115819-66115838 Msa0465670:intron 50.0%
CACTAAATGGGGTCGCTACA+TGG + chr3_3:66115993-66116012 None:intergenic 50.0%
CATGTAGCGACCCCATTTAG+TGG - chr3_3:66115991-66116010 Msa0465670:intron 50.0%
CGACCCCATTTAGTGGGATA+AGG - chr3_3:66115998-66116017 Msa0465670:intron 50.0%
ATATGATGACCATGGCGGCA+TGG - chr3_3:66116066-66116085 Msa0465670:intron 50.0%
ACGCTATTGCCTAGGCAAGA+AGG + chr3_3:66116195-66116214 None:intergenic 50.0%
CTGAAGACACGCTATTGCCT+AGG + chr3_3:66116203-66116222 None:intergenic 50.0%
!! CGCTAAAAGGGGTATCAGGT+TGG - chr3_3:66116457-66116476 Msa0465670:intron 50.0%
GTTGAGATTGGAGGCGGTAG+TGG + chr3_3:66112345-66112364 None:intergenic 55.0%
ACAACCTCCTCACTGCTCCA+TGG - chr3_3:66112363-66112382 Msa0465670:CDS 55.0%
GAATCCGCGGGTTTGAGAAG+CGG + chr3_3:66112390-66112409 None:intergenic 55.0%
ACCCGCGGATTCACTTTCTC+TGG - chr3_3:66112398-66112417 Msa0465670:CDS 55.0%
! GATTTCAGGTCGCGCGTATG+AGG - chr3_3:66112680-66112699 Msa0465670:intron 55.0%
GGAAAGCAGAGACAGGGAGT+TGG + chr3_3:66113591-66113610 None:intergenic 55.0%
!! TCTGCCCCTCTTGCTTTTGC+GGG - chr3_3:66113642-66113661 Msa0465670:intron 55.0%
TTCCCCCGCAAAAGCAAGAG+GGG + chr3_3:66113649-66113668 None:intergenic 55.0%
GTTTCCCCCGCAAAAGCAAG+AGG + chr3_3:66113651-66113670 None:intergenic 55.0%
TAACCAGCTACGGTGTGAGG+TGG + chr3_3:66114448-66114467 None:intergenic 55.0%
! GTTGGGTTAGGAGGTGAAGC+TGG + chr3_3:66115015-66115034 None:intergenic 55.0%
GTTCTGCCATGCTTGCAAGC+TGG + chr3_3:66115165-66115184 None:intergenic 55.0%
AAATAGTGGCCATGCCGCCA+TGG + chr3_3:66116078-66116097 None:intergenic 55.0%
!! GGGAGCGAAACAGTGGATTG+AGG - chr3_3:66116634-66116653 Msa0465670:intron 55.0%
! TCGGAGATGACGGTGGGGAA+GGG + chr3_3:66112301-66112320 None:intergenic 60.0%
! ATCGGAGATGACGGTGGGGA+AGG + chr3_3:66112302-66112321 None:intergenic 60.0%
! GGAGATCGGAGATGACGGTG+GGG + chr3_3:66112306-66112325 None:intergenic 60.0%
! CGGAGATCGGAGATGACGGT+GGG + chr3_3:66112307-66112326 None:intergenic 60.0%
! GGTAGTGGTGGAGTTTGCGG+CGG + chr3_3:66112330-66112349 None:intergenic 60.0%
! GGCGGTAGTGGTGGAGTTTG+CGG + chr3_3:66112333-66112352 None:intergenic 60.0%
! GAGATTGGAGGCGGTAGTGG+TGG + chr3_3:66112342-66112361 None:intergenic 60.0%
AAGCGGACCATGGAGCAGTG+AGG + chr3_3:66112373-66112392 None:intergenic 60.0%
CGGGTTTGAGAAGCGGACCA+TGG + chr3_3:66112383-66112402 None:intergenic 60.0%
TGGTCCGCTTCTCAAACCCG+CGG - chr3_3:66112383-66112402 Msa0465670:CDS 60.0%
!! CTGCCCCTCTTGCTTTTGCG+GGG - chr3_3:66113643-66113662 Msa0465670:intron 60.0%
!! TGCCCCTCTTGCTTTTGCGG+GGG - chr3_3:66113644-66113663 Msa0465670:intron 60.0%
GTTCCACCTCACACCGTAGC+TGG - chr3_3:66114442-66114461 Msa0465670:intron 60.0%
TGGGGAAGGGGAGGAAGAGG+TGG + chr3_3:66112288-66112307 None:intergenic 65.0%
! AGATGACGGTGGGGAAGGGG+AGG + chr3_3:66112297-66112316 None:intergenic 65.0%
! CGGAGATGACGGTGGGGAAG+GGG + chr3_3:66112300-66112319 None:intergenic 65.0%
! GCGGAGATCGGAGATGACGG+TGG + chr3_3:66112308-66112327 None:intergenic 65.0%
GCGGCGGAGATCGGAGATGA+CGG + chr3_3:66112311-66112330 None:intergenic 65.0%
GAGTTTGCGGCGGCGGAGAT+CGG + chr3_3:66112320-66112339 None:intergenic 65.0%
! AGTGGTGGAGTTTGCGGCGG+CGG + chr3_3:66112327-66112346 None:intergenic 65.0%
CGGACCATGGAGCAGTGAGG+AGG + chr3_3:66112370-66112389 None:intergenic 65.0%
AAGGGGGAGCCTTGGCGCAA+TGG - chr3_3:66113942-66113961 Msa0465670:intron 65.0%
CGGGAAGGGGTTCCACCCTT+TGG + chr3_3:66114060-66114079 None:intergenic 65.0%
CTCTCCGGCAGTAGCAGCTG+TGG + chr3_3:66114473-66114492 None:intergenic 65.0%
CACAGCTGCTACTGCCGGAG+AGG - chr3_3:66114471-66114490 Msa0465670:intron 65.0%
CGGTGGGGAAGGGGAGGAAG+AGG + chr3_3:66112291-66112310 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 66112037 66117173 66112037 ID=Msa0465670;Name=Msa0465670
chr3_3 mRNA 66112037 66117173 66112037 ID=Msa0465670-mRNA-1;Parent=Msa0465670;Name=Msa0465670-mRNA-1;_AED=0.02;_eAED=0.02;_QI=154|1|1|1|1|1|6|262|224
chr3_3 exon 66112037 66112575 66112037 ID=Msa0465670-mRNA-1:exon:14900;Parent=Msa0465670-mRNA-1
chr3_3 exon 66114704 66114768 66114704 ID=Msa0465670-mRNA-1:exon:14899;Parent=Msa0465670-mRNA-1
chr3_3 exon 66116356 66116406 66116356 ID=Msa0465670-mRNA-1:exon:14898;Parent=Msa0465670-mRNA-1
chr3_3 exon 66116509 66116522 66116509 ID=Msa0465670-mRNA-1:exon:14897;Parent=Msa0465670-mRNA-1
chr3_3 exon 66116642 66116672 66116642 ID=Msa0465670-mRNA-1:exon:14896;Parent=Msa0465670-mRNA-1
chr3_3 exon 66116783 66117173 66116783 ID=Msa0465670-mRNA-1:exon:14895;Parent=Msa0465670-mRNA-1
chr3_3 five_prime_UTR 66117020 66117173 66117020 ID=Msa0465670-mRNA-1:five_prime_utr;Parent=Msa0465670-mRNA-1
chr3_3 CDS 66116783 66117019 66116783 ID=Msa0465670-mRNA-1:cds;Parent=Msa0465670-mRNA-1
chr3_3 CDS 66116642 66116672 66116642 ID=Msa0465670-mRNA-1:cds;Parent=Msa0465670-mRNA-1
chr3_3 CDS 66116509 66116522 66116509 ID=Msa0465670-mRNA-1:cds;Parent=Msa0465670-mRNA-1
chr3_3 CDS 66116356 66116406 66116356 ID=Msa0465670-mRNA-1:cds;Parent=Msa0465670-mRNA-1
chr3_3 CDS 66114704 66114768 66114704 ID=Msa0465670-mRNA-1:cds;Parent=Msa0465670-mRNA-1
chr3_3 CDS 66112299 66112575 66112299 ID=Msa0465670-mRNA-1:cds;Parent=Msa0465670-mRNA-1
chr3_3 three_prime_UTR 66112037 66112298 66112037 ID=Msa0465670-mRNA-1:three_prime_utr;Parent=Msa0465670-mRNA-1
Gene Sequence

>Msa0465670

ATGCAATCTCTATCACTGAAACTCAGCAAGAGGCTCTCCAATTCTTCGCATCCTCATTGGAGAATCTCATCAAACTTCATCGCTCACGCTTCAACCACCTCTTCCTCCCCTTCCCCACCGTCATCTCCGATCTCCGCCGCCGCAAACTCCACCACTACCGCCTCCAATCTCAACAACCTCCTCACTGCTCCATGGTCCGCTTCTCAAACCCGCGGATTCACTTTCTCTGGATCTGATGTTAGAGTTGGAAATTTGATTGAAAATCGAGGTCGCGCGTATGAGGTTCTTAGACAATATCACTCTCTGGAAGGAACAGGAAAAGCTGCTATCAAGGTTCCACCTCACACCGTAGCTGGTTATTCCACAGCTGCTACTGCCGGAGAGGTTGATATCAAAAGGGAGCGAAACAGTGGATTGAGGAATCAAGGTCCAAAGACAAAGAGAGAACAGCTCCTAAAAGTTACTGCAGCTGTTCCCCTTCTTTTAATATACCCAAATGCCTATTCATTGCTCGCGGCAAATTTCTTCATATTCTGGCACATAAATGCAGGGATCGAAGAGATTTTGGCAGACTACGTTCACCATGAAATGACCAGGGAATTTGTCTTGATTTCTCTCAGGTTGTTCCTGATAATAGCAATTAAGGACGTTTTCTTAAATTTTGTATTTGTATGA

Protein sequence

>Msa0465670

MQSLSLKLSKRLSNSSHPHWRISSNFIAHASTTSSSPSPPSSPISAAANSTTTASNLNNLLTAPWSASQTRGFTFSGSDVRVGNLIENRGRAYEVLRQYHSLEGTGKAAIKVPPHTVAGYSTAATAGEVDIKRERNSGLRNQGPKTKREQLLKVTAAVPLLLIYPNAYSLLAANFFIFWHINAGIEEILADYVHHEMTREFVLISLRLFLIIAIKDVFLNFVFV*