AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1183100


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1183100 MtrunA17_Chr8g0336611 98.477 197 3 0 1 197 1 197 2.57e-141 392
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1183100 AT5G47030.1 70.732 205 50 3 1 197 1 203 4.59e-101 290

Find 78 sgRNAs with CRISPR-Local

Find 282 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGCTCGATAAATATATTT+TGG 0.135543 8_1:+18306053 Msa1183100:three_prime_UTR
GCCACTGCTTACAAAATATT+TGG 0.143612 8_1:-18305639 None:intergenic
TTGTCGCTGAACTGAGCTTC+TGG 0.214226 8_1:-18305769 None:intergenic
CAATGTCTTGCTCAACTTCC+TGG 0.279784 8_1:-18306018 None:intergenic
CAGTTCAGCGACAACTGATT+TGG 0.280457 8_1:+18305778 Msa1183100:CDS
GTCTTAGGTGGATCAAGATT+GGG 0.302329 8_1:-18302169 None:intergenic
AGTTTGGTGGGAAGAGTAGA+AGG 0.331246 8_1:-18302226 None:intergenic
ATGAAAGCGAGGGGTGTCTT+AGG 0.331865 8_1:-18302184 None:intergenic
TTGTGTTGAAACCGAATTGA+TGG 0.351479 8_1:+18305964 Msa1183100:three_prime_UTR
AACGAAATTGACAGTGAGTT+TGG 0.358806 8_1:-18302242 None:intergenic
CCCATCTGGCCTGTTGTAGC+TGG 0.367328 8_1:-18305539 None:intergenic
CGGCGGAACATGGTGGTTGT+AGG 0.371476 8_1:-18302037 None:intergenic
GCAATTGTTGCAACATGTCC+TGG 0.384614 8_1:-18305569 None:intergenic
CGCTGTTGAGGCTGTTCCAC+TGG 0.397290 8_1:+18305700 Msa1183100:CDS
TGTCTTAGGTGGATCAAGAT+TGG 0.399583 8_1:-18302170 None:intergenic
CTCAACTTCCTGGAGCTAGA+TGG 0.402775 8_1:-18306008 None:intergenic
GTGGGAAGAGTAGAAGGAAT+AGG 0.422638 8_1:-18302220 None:intergenic
TTACACTGAGACAAAATAAC+CGG 0.422856 8_1:-18305908 None:intergenic
GGTTGTAGGGTTAGATCGCT+CGG 0.425264 8_1:-18302023 None:intergenic
AATATATTATTCCATCAATT+CGG 0.428569 8_1:-18305975 None:intergenic
ATTCCTCCTTCGTTGAAGCT+TGG 0.449450 8_1:+18302134 Msa1183100:CDS
GAGAGTGTGAAAGAGAGAAT+AGG 0.450880 8_1:-18301937 None:intergenic
GAGAAAGCTGAAGCTCAGAT+TGG 0.456466 8_1:+18305800 Msa1183100:CDS
TTCTCAATTGTCCGCTAAAG+AGG 0.456746 8_1:+18302276 Msa1183100:CDS
TGTCGCTGAACTGAGCTTCT+GGG 0.464302 8_1:-18305768 None:intergenic
GTTATAATCCCAGCTACAAC+AGG 0.464443 8_1:+18305530 Msa1183100:CDS
GCGGACAATTGAGAAGCATA+AGG 0.477432 8_1:-18302268 None:intergenic
ACAATTGCAGAGTTGAAACC+TGG 0.489060 8_1:+18305584 Msa1183100:CDS
AACAACTTCCATCTAGCTCC+AGG 0.491686 8_1:+18306000 Msa1183100:three_prime_UTR
GGAGAAGCGGCGAGTGGCGA+CGG 0.501137 8_1:-18302086 None:intergenic
CCATCTGGCCTGTTGTAGCT+GGG 0.501802 8_1:-18305538 None:intergenic
TGGCGACGGCGCGTGAGAGA+AGG 0.505897 8_1:-18302072 None:intergenic
CCCAGCTACAACAGGCCAGA+TGG 0.507781 8_1:+18305538 Msa1183100:CDS
TGATGCAAGCCTTGTGCAGA+AGG 0.512823 8_1:+18305730 Msa1183100:CDS
GGCGGAACATGGTGGTTGTA+GGG 0.514248 8_1:-18302036 None:intergenic
GTCCTGGGAGAATACCCATC+TGG 0.526235 8_1:-18305553 None:intergenic
CTTGAAGACCCTTCTGCACA+AGG 0.528902 8_1:-18305739 None:intergenic
GGCCAGATGGGTATTCTCCC+AGG 0.530017 8_1:+18305551 Msa1183100:CDS
TATCAGCAACAGAGTTTGCA+TGG 0.530676 8_1:-18305673 None:intergenic
GTGTGAAAGAGAGAATAGGA+TGG 0.534366 8_1:-18301933 None:intergenic
TCTTGTACAATCATGACCCC+AGG 0.535453 8_1:-18305602 None:intergenic
ACGAAGGAGGAATCAGTGAC+GGG 0.543173 8_1:-18302124 None:intergenic
GGCGACGGCGCGTGAGAGAA+GGG 0.548935 8_1:-18302071 None:intergenic
AAAGTTCAACTACAGGACTT+AGG 0.553646 8_1:-18305861 None:intergenic
AGATGTAGCGCGGCGGAACA+TGG 0.556781 8_1:-18302047 None:intergenic
GGAAGAGTAGAAGGAATAGG+AGG 0.562952 8_1:-18302217 None:intergenic
CCAGCTACAACAGGCCAGAT+GGG 0.564262 8_1:+18305539 Msa1183100:CDS
GTTGTAGGGTTAGATCGCTC+GGG 0.565112 8_1:-18302022 None:intergenic
CTTGCATCAATTTGATCCAG+TGG 0.565593 8_1:-18305716 None:intergenic
TTTATTCCAAGCTTCAACGA+AGG 0.567962 8_1:-18302140 None:intergenic
ATTCCAAGCTTCAACGAAGG+AGG 0.569149 8_1:-18302137 None:intergenic
GGGGTCATGATTGTACAAGA+AGG 0.576614 8_1:+18305605 Msa1183100:CDS
GAAGAAATGAACCTCTTTAG+CGG 0.579872 8_1:-18302287 None:intergenic
AAATTGACAGTGAGTTTGGT+GGG 0.582688 8_1:-18302238 None:intergenic
AAAGCGAGGGGTGTCTTAGG+TGG 0.584645 8_1:-18302181 None:intergenic
AACGAAGGAGGAATCAGTGA+CGG 0.589978 8_1:-18302125 None:intergenic
GGGTCATGATTGTACAAGAA+GGG 0.590188 8_1:+18305606 Msa1183100:CDS
TAGCTACATCGGTGGAGAAG+CGG 0.592259 8_1:-18302099 None:intergenic
GACGAGATTTGATGAAAGCG+AGG 0.592477 8_1:-18302195 None:intergenic
GAAATTGACAGTGAGTTTGG+TGG 0.611076 8_1:-18302239 None:intergenic
ATCGGTGGAGAAGCGGCGAG+TGG 0.614140 8_1:-18302092 None:intergenic
ACGAGATTTGATGAAAGCGA+GGG 0.617554 8_1:-18302194 None:intergenic
TACACTGAGACAAAATAACC+GGG 0.620474 8_1:-18305907 None:intergenic
CAATTGCAGAGTTGAAACCT+GGG 0.627022 8_1:+18305585 Msa1183100:CDS
CAATTGTTGCAACATGTCCT+GGG 0.627841 8_1:-18305568 None:intergenic
TCTTAGGTGGATCAAGATTG+GGG 0.630644 8_1:-18302168 None:intergenic
TGCTGATATAATCGCTGTTG+AGG 0.643815 8_1:+18305688 Msa1183100:CDS
CACTGAGACAAAATAACCGG+GGG 0.645820 8_1:-18305905 None:intergenic
CGAAGGAGGAATCAGTGACG+GGG 0.648705 8_1:-18302123 None:intergenic
GATGCAAGCCTTGTGCAGAA+GGG 0.670616 8_1:+18305731 Msa1183100:CDS
CGAGATTTGATGAAAGCGAG+GGG 0.674012 8_1:-18302193 None:intergenic
TGTAGCGCGGCGGAACATGG+TGG 0.700595 8_1:-18302044 None:intergenic
ACACTGAGACAAAATAACCG+GGG 0.711170 8_1:-18305906 None:intergenic
AGAGAAGGGAAGATGTAGCG+CGG 0.716986 8_1:-18302057 None:intergenic
GAAGGAGGAATCAGTGACGG+GGG 0.719279 8_1:-18302122 None:intergenic
AATTGCAGAGTTGAAACCTG+GGG 0.727229 8_1:+18305586 Msa1183100:CDS
GAAGGGAAGATGTAGCGCGG+CGG 0.762683 8_1:-18302054 None:intergenic
ACTGAGACAAAATAACCGGG+GGG 0.790589 8_1:-18305904 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTATTTAACATAAA+TGG - chr8_1:18303244-18303263 None:intergenic 10.0%
!! TTAAATAAAAAACTGTATTT+AGG + chr8_1:18303250-18303269 Msa1183100:intron 10.0%
!! ATAATAAATGGTAAAATAAA+AGG - chr8_1:18303410-18303429 None:intergenic 10.0%
!! TATAACAATATATAAAAAGA+AGG - chr8_1:18304965-18304984 None:intergenic 10.0%
!!! CTTTTTATATATTGTTATAA+TGG + chr8_1:18304966-18304985 Msa1183100:intron 10.0%
!!! AAAAATGATTTTTTTGTTGT+TGG + chr8_1:18302638-18302657 Msa1183100:intron 15.0%
!! AATGAAATCTCAATAATAAA+TGG - chr8_1:18303422-18303441 None:intergenic 15.0%
!!! TTTTTTTATTCTTTGTTTTG+TGG + chr8_1:18303630-18303649 Msa1183100:intron 15.0%
!!! TTTTTTATTCTTTGTTTTGT+GGG + chr8_1:18303631-18303650 Msa1183100:intron 15.0%
!! TAATTATCTCAAATTATTAC+TGG - chr8_1:18303781-18303800 None:intergenic 15.0%
!! AATTCATTATTCAAGAAATA+CGG - chr8_1:18303955-18303974 None:intergenic 15.0%
!! TTAAACGTATAAAATATCAA+GGG - chr8_1:18304225-18304244 None:intergenic 15.0%
!! TTTAAACGTATAAAATATCA+AGG - chr8_1:18304226-18304245 None:intergenic 15.0%
!! AATATATTATTCCATCAATT+CGG - chr8_1:18305978-18305997 None:intergenic 15.0%
!! CAAATCTGAATGAAAATTTA+GGG - chr8_1:18302312-18302331 None:intergenic 20.0%
!! ACAAATCTGAATGAAAATTT+AGG - chr8_1:18302313-18302332 None:intergenic 20.0%
!! TTAAATCTGAATTAGTGAAT+TGG + chr8_1:18302474-18302493 Msa1183100:intron 20.0%
!!! AATTGGCATTATTTTGAAAT+TGG + chr8_1:18302491-18302510 Msa1183100:intron 20.0%
!! AAAAACTACTTCAAATAAGA+AGG - chr8_1:18302667-18302686 None:intergenic 20.0%
!!! TAACTAGTGGATTTTTTTTT+TGG + chr8_1:18303143-18303162 Msa1183100:intron 20.0%
!!! AACTAGTGGATTTTTTTTTT+GGG + chr8_1:18303144-18303163 Msa1183100:intron 20.0%
!!! TTTTTTTTGGGTAGTATTTA+CGG + chr8_1:18303156-18303175 Msa1183100:intron 20.0%
!!! ATAGACAATTTTTTAACTTC+TGG + chr8_1:18304086-18304105 Msa1183100:intron 20.0%
!!! GAACATTTTTCATATAAAAC+TGG + chr8_1:18304369-18304388 Msa1183100:intron 20.0%
!! TTCTCTATCAATAATGTAAA+TGG - chr8_1:18305001-18305020 None:intergenic 20.0%
!!! ACCTAATAGAATATTTTACT+AGG + chr8_1:18305326-18305345 Msa1183100:intron 20.0%
!!! CCTAATAGAATATTTTACTA+GGG + chr8_1:18305327-18305346 Msa1183100:intron 20.0%
!! TGTCAGTTTAATTATCTATA+TGG + chr8_1:18305363-18305382 Msa1183100:intron 20.0%
!! AAAAGAAAAAAATAACCACA+GGG - chr8_1:18305435-18305454 None:intergenic 20.0%
!!! ATGACACAATTTAGTTTTAT+AGG + chr8_1:18305499-18305518 Msa1183100:intron 20.0%
!!! AAAGCTCGATAAATATATTT+TGG + chr8_1:18306053-18306072 Msa1183100:three_prime_UTR 20.0%
!! TTGTGAGATTTTAGATGATT+TGG + chr8_1:18302385-18302404 Msa1183100:intron 25.0%
!!! TTGGTTTTGATTTGTGTTTT+TGG + chr8_1:18302404-18302423 Msa1183100:intron 25.0%
!!! TGGTTTTGATTTGTGTTTTT+GGG + chr8_1:18302405-18302424 Msa1183100:intron 25.0%
!! ATTTTTGCAAATTGGTGAAT+TGG + chr8_1:18302433-18302452 Msa1183100:intron 25.0%
!! TTTTTGCAAATTGGTGAATT+GGG + chr8_1:18302434-18302453 Msa1183100:intron 25.0%
!!! TGAAGTAGTTTTTAGATTGT+TGG + chr8_1:18302674-18302693 Msa1183100:intron 25.0%
! ATTGTGGAATAGGTTTAAAT+TGG + chr8_1:18302716-18302735 Msa1183100:intron 25.0%
! AAATTGGATGAATTCATTTG+TGG + chr8_1:18302732-18302751 Msa1183100:intron 25.0%
! TAGGATTTGGATTGAATTAT+TGG + chr8_1:18302828-18302847 Msa1183100:intron 25.0%
! TGATTTATGATAGTATGTCA+TGG + chr8_1:18302867-18302886 Msa1183100:intron 25.0%
!!! GTTTTCAGTTTATTTTCACA+AGG + chr8_1:18302974-18302993 Msa1183100:intron 25.0%
!!! TTGTGTGTAAGTTATTTCTA+TGG - chr8_1:18303056-18303075 None:intergenic 25.0%
!!! TTTTTTTGGGTAGTATTTAC+GGG + chr8_1:18303157-18303176 Msa1183100:intron 25.0%
!! TACTGATGATTTAACTTCAA+AGG + chr8_1:18303184-18303203 Msa1183100:intron 25.0%
! AGAAAAAACAACAACAAACA+CGG - chr8_1:18303288-18303307 None:intergenic 25.0%
!!! TGTTGTTTTTTCTTTTTGTG+TGG + chr8_1:18303295-18303314 Msa1183100:intron 25.0%
! GTTTCAGCAATAAAATTACA+CGG - chr8_1:18303574-18303593 None:intergenic 25.0%
! TTAGAAAAAGACAATGTTAC+TGG + chr8_1:18304113-18304132 Msa1183100:intron 25.0%
! AAACCAAAATGTATACTTCA+CGG - chr8_1:18304305-18304324 None:intergenic 25.0%
! TTAGAACAGATAGAACATTA+TGG + chr8_1:18304445-18304464 Msa1183100:intron 25.0%
! ATACAATACAAGTTAGTACT+GGG + chr8_1:18304549-18304568 Msa1183100:intron 25.0%
! TTTCTTGTCAAACTATTAAG+AGG + chr8_1:18304737-18304756 Msa1183100:intron 25.0%
! TACATAATTCGAAGGTTTAT+AGG - chr8_1:18304899-18304918 None:intergenic 25.0%
! TTGGATAAAAACACTACTAA+AGG - chr8_1:18305047-18305066 None:intergenic 25.0%
!! CAATCTTTTCATCACTTTAT+TGG - chr8_1:18305066-18305085 None:intergenic 25.0%
! CCCTAGTAAAATATTCTATT+AGG - chr8_1:18305330-18305349 None:intergenic 25.0%
! AATAAATTAGATCACCAACT+TGG - chr8_1:18305390-18305409 None:intergenic 25.0%
! GAAAAGAAAAAAATAACCAC+AGG - chr8_1:18305436-18305455 None:intergenic 25.0%
!!! TAAATTGTGTCATTTTCCAA+GGG - chr8_1:18305492-18305511 None:intergenic 25.0%
!!! TTTAGTTTTATAGGTTGATC+TGG + chr8_1:18305508-18305527 Msa1183100:intron 25.0%
! AAAAAGTAAAGTTCAACTAC+AGG - chr8_1:18305871-18305890 None:intergenic 25.0%
!! GTTCTTGTTATTGTTGTTGA+TGG + chr8_1:18302331-18302350 Msa1183100:intron 30.0%
AATTGGGATTATTGTGGATT+AGG + chr8_1:18302450-18302469 Msa1183100:intron 30.0%
! ATTGGGATTATTGTGGATTA+GGG + chr8_1:18302451-18302470 Msa1183100:intron 30.0%
! AGCTACTTTGTGTTTGTTTA+AGG + chr8_1:18302574-18302593 Msa1183100:intron 30.0%
! GCTACTTTGTGTTTGTTTAA+GGG + chr8_1:18302575-18302594 Msa1183100:intron 30.0%
!!! TGTTGGTTTTGCATTTTTGT+AGG + chr8_1:18302691-18302710 Msa1183100:intron 30.0%
! TGCATTTTTGTAGGATATTG+TGG + chr8_1:18302700-18302719 Msa1183100:intron 30.0%
TTTGTAGGATATTGTGGAAT+AGG + chr8_1:18302706-18302725 Msa1183100:intron 30.0%
ATAACGAAGTGATTAGGATA+CGG + chr8_1:18302757-18302776 Msa1183100:intron 30.0%
ATACGGTTGATTGAGTAAAA+TGG + chr8_1:18302774-18302793 Msa1183100:intron 30.0%
TACGGTTGATTGAGTAAAAT+GGG + chr8_1:18302775-18302794 Msa1183100:intron 30.0%
TTATAAGAGAGCAATTGCTT+AGG + chr8_1:18302809-18302828 Msa1183100:intron 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG - chr8_1:18303003-18303022 None:intergenic 30.0%
GTAAGTTGTTTATCGAAACT+AGG + chr8_1:18303098-18303117 Msa1183100:intron 30.0%
!!! TTTTTTGGGTAGTATTTACG+GGG + chr8_1:18303158-18303177 Msa1183100:intron 30.0%
ATGGAAAAACTATGCATCAA+AGG - chr8_1:18303225-18303244 None:intergenic 30.0%
CTCAAGCAATTGAAATATGT+GGG - chr8_1:18303465-18303484 None:intergenic 30.0%
GTTAATCAACCTACTAGAAA+AGG - chr8_1:18303503-18303522 None:intergenic 30.0%
GTTGATTAACTTCTTAGAAG+TGG + chr8_1:18303513-18303532 Msa1183100:intron 30.0%
CAGGTAATACTAAAATCTGA+GGG - chr8_1:18303667-18303686 None:intergenic 30.0%
!! CTCAGATTTTAGTATTACCT+GGG + chr8_1:18303666-18303685 Msa1183100:intron 30.0%
AAGTAATGTTGTAGGATTTC+AGG + chr8_1:18303691-18303710 Msa1183100:intron 30.0%
TTGAATGTAATCACTTGTGT+CGG + chr8_1:18303806-18303825 Msa1183100:intron 30.0%
CAATTTACTGTGCTTAACAT+TGG + chr8_1:18304143-18304162 Msa1183100:intron 30.0%
!! TGTCACTTTCATGGATTATT+GGG - chr8_1:18304186-18304205 None:intergenic 30.0%
!! ATGTCACTTTCATGGATTAT+TGG - chr8_1:18304187-18304206 None:intergenic 30.0%
!! CATTTCAAATGTCACTTTCA+TGG - chr8_1:18304195-18304214 None:intergenic 30.0%
! TTACCGTGAAGTATACATTT+TGG + chr8_1:18304299-18304318 Msa1183100:intron 30.0%
! TTGTTGTTGATGTGTTAGAA+TGG + chr8_1:18304516-18304535 Msa1183100:intron 30.0%
CATACAATACAAGTTAGTAC+TGG + chr8_1:18304548-18304567 Msa1183100:intron 30.0%
AACTCCAATTGTGTAAAAGA+TGG + chr8_1:18304605-18304624 Msa1183100:intron 30.0%
! TCTACCATCTTTTACACAAT+TGG - chr8_1:18304612-18304631 None:intergenic 30.0%
GTCAAACTATTAAGAGGATT+TGG + chr8_1:18304743-18304762 Msa1183100:intron 30.0%
AACTAAAACCCTTTCTTACT+AGG - chr8_1:18304843-18304862 None:intergenic 30.0%
!! AGTTGTTGTTAAGTGTCTTT+TGG + chr8_1:18304865-18304884 Msa1183100:intron 30.0%
! CGTGATTATATTTTGTACAC+AGG - chr8_1:18304936-18304955 None:intergenic 30.0%
CTACTAGAACATATGTTTCA+TGG + chr8_1:18305193-18305212 Msa1183100:intron 30.0%
!!! ATCAACATTTTTTCACAGTG+TGG - chr8_1:18305299-18305318 None:intergenic 30.0%
ACACTGTGAAAAAATGTTGA+TGG + chr8_1:18305298-18305317 Msa1183100:intron 30.0%
ATTATCTATATGGACCAAGT+TGG + chr8_1:18305373-18305392 Msa1183100:intron 30.0%
!!! CTAAATTGTGTCATTTTCCA+AGG - chr8_1:18305493-18305512 None:intergenic 30.0%
! ACCAAATATTTTGTAAGCAG+TGG + chr8_1:18305638-18305657 Msa1183100:CDS 30.0%
TTACACTGAGACAAAATAAC+CGG - chr8_1:18305911-18305930 None:intergenic 30.0%
TTTATTCCAAGCTTCAACGA+AGG - chr8_1:18302143-18302162 None:intergenic 35.0%
AAATTGACAGTGAGTTTGGT+GGG - chr8_1:18302241-18302260 None:intergenic 35.0%
AACGAAATTGACAGTGAGTT+TGG - chr8_1:18302245-18302264 None:intergenic 35.0%
GAAGAAATGAACCTCTTTAG+CGG - chr8_1:18302290-18302309 None:intergenic 35.0%
TTGGTGAATTGGGATTATTG+TGG + chr8_1:18302444-18302463 Msa1183100:intron 35.0%
GTGGAAATAACGAAGTGATT+AGG + chr8_1:18302751-18302770 Msa1183100:intron 35.0%
ACGGTTGATTGAGTAAAATG+GGG + chr8_1:18302776-18302795 Msa1183100:intron 35.0%
GATTGAGTAAAATGGGGATA+AGG + chr8_1:18302782-18302801 Msa1183100:intron 35.0%
!! TAGTATGTCATGGTGTCATT+AGG + chr8_1:18302877-18302896 Msa1183100:intron 35.0%
!! AGTATGTCATGGTGTCATTA+GGG + chr8_1:18302878-18302897 Msa1183100:intron 35.0%
! TCTGCTTAGTTGACTTATCT+AGG + chr8_1:18302912-18302931 Msa1183100:intron 35.0%
ATGTCGTTAACTGTAACTAG+TGG + chr8_1:18303130-18303149 Msa1183100:intron 35.0%
!!! TTTTTGGGTAGTATTTACGG+GGG + chr8_1:18303159-18303178 Msa1183100:intron 35.0%
! TTAACCATGCTCCATTTTCT+AGG + chr8_1:18303364-18303383 Msa1183100:intron 35.0%
! TAACCATGCTCCATTTTCTA+GGG + chr8_1:18303365-18303384 Msa1183100:intron 35.0%
GTGGGCAAAAACATAACATA+AGG - chr8_1:18303447-18303466 None:intergenic 35.0%
CCTCAAGCAATTGAAATATG+TGG - chr8_1:18303466-18303485 None:intergenic 35.0%
CCACATATTTCAATTGCTTG+AGG + chr8_1:18303463-18303482 Msa1183100:intron 35.0%
CCAGGTAATACTAAAATCTG+AGG - chr8_1:18303668-18303687 None:intergenic 35.0%
!! CCTCAGATTTTAGTATTACC+TGG + chr8_1:18303665-18303684 Msa1183100:intron 35.0%
CATAATACCGACACAATTGA+AGG - chr8_1:18303868-18303887 None:intergenic 35.0%
! CAATTGTGTCGGTATTATGT+TGG + chr8_1:18303869-18303888 Msa1183100:intron 35.0%
! ATGCCTTCAATTAGAAGTGT+TGG + chr8_1:18303914-18303933 Msa1183100:intron 35.0%
GTACCAACACTTCTAATTGA+AGG - chr8_1:18303920-18303939 None:intergenic 35.0%
!! TAGAAGTGTTGGTACTACAT+AGG + chr8_1:18303925-18303944 Msa1183100:intron 35.0%
TTATCTCAAATGCTACATCG+TGG + chr8_1:18304041-18304060 Msa1183100:intron 35.0%
! TTTGTGCAACAGCTCTTTTA+AGG + chr8_1:18304322-18304341 Msa1183100:intron 35.0%
!! CAACAGCTCTTTTAAGGAAT+GGG + chr8_1:18304328-18304347 Msa1183100:intron 35.0%
! TACAAGTTAGTACTGGGATT+TGG + chr8_1:18304555-18304574 Msa1183100:intron 35.0%
AGGAGAGTAGATCAAATGAA+AGG + chr8_1:18304677-18304696 Msa1183100:intron 35.0%
! AAAGGTACACCAATAGTTAG+TGG + chr8_1:18304695-18304714 Msa1183100:intron 35.0%
TGGACAGATACATAATTCGA+AGG - chr8_1:18304907-18304926 None:intergenic 35.0%
! ATTTTGTACACAGGTTGTAG+TGG - chr8_1:18304927-18304946 None:intergenic 35.0%
ATTACTGCTAGAACATGCAT+TGG + chr8_1:18305109-18305128 Msa1183100:intron 35.0%
! AGTAGTCGCTTCTTTTATCA+TGG - chr8_1:18305178-18305197 None:intergenic 35.0%
ATGTTTCATGGCACACTATT+TGG + chr8_1:18305205-18305224 Msa1183100:intron 35.0%
AATCGTACAAATCTGTGTGA+TGG + chr8_1:18305244-18305263 Msa1183100:intron 35.0%
ATGGTCATTCTTAATCCTTG+TGG + chr8_1:18305263-18305282 Msa1183100:intron 35.0%
!!! TTTTTTCACAGTGTGGTTCA+TGG - chr8_1:18305292-18305311 None:intergenic 35.0%
AAAAAAATAACCACAGGGCA+GGG - chr8_1:18305430-18305449 None:intergenic 35.0%
TTCCTTAATTCTTCTTCCCT+TGG + chr8_1:18305473-18305492 Msa1183100:intron 35.0%
TTCCAAGGGAAGAAGAATTA+AGG - chr8_1:18305478-18305497 None:intergenic 35.0%
GCCACTGCTTACAAAATATT+TGG - chr8_1:18305642-18305661 None:intergenic 35.0%
AAAGTTCAACTACAGGACTT+AGG - chr8_1:18305864-18305883 None:intergenic 35.0%
TACACTGAGACAAAATAACC+GGG - chr8_1:18305910-18305929 None:intergenic 35.0%
TTGTGTTGAAACCGAATTGA+TGG + chr8_1:18305964-18305983 Msa1183100:three_prime_UTR 35.0%
GTGTGAAAGAGAGAATAGGA+TGG - chr8_1:18301936-18301955 None:intergenic 40.0%
! GAGAGTGTGAAAGAGAGAAT+AGG - chr8_1:18301940-18301959 None:intergenic 40.0%
TCTTAGGTGGATCAAGATTG+GGG - chr8_1:18302171-18302190 None:intergenic 40.0%
GTCTTAGGTGGATCAAGATT+GGG - chr8_1:18302172-18302191 None:intergenic 40.0%
TGTCTTAGGTGGATCAAGAT+TGG - chr8_1:18302173-18302192 None:intergenic 40.0%
ACGAGATTTGATGAAAGCGA+GGG - chr8_1:18302197-18302216 None:intergenic 40.0%
GAAATTGACAGTGAGTTTGG+TGG - chr8_1:18302242-18302261 None:intergenic 40.0%
TTCTCAATTGTCCGCTAAAG+AGG + chr8_1:18302276-18302295 Msa1183100:CDS 40.0%
! GGGTCTGCATTTTTGCAAAT+TGG + chr8_1:18302425-18302444 Msa1183100:intron 40.0%
GAGAGCAATTGCTTAGGATT+TGG + chr8_1:18302815-18302834 Msa1183100:intron 40.0%
!! GTATGTCATGGTGTCATTAG+GGG + chr8_1:18302879-18302898 Msa1183100:intron 40.0%
TCAACTAAGCAGATCCAAAC+AGG - chr8_1:18302905-18302924 None:intergenic 40.0%
!! ACCTGCATTCCTTTTCTAGT+AGG + chr8_1:18303491-18303510 Msa1183100:intron 40.0%
ACCTACTAGAAAAGGAATGC+AGG - chr8_1:18303495-18303514 None:intergenic 40.0%
CCTACAACATTACTTTACCC+AGG - chr8_1:18303686-18303705 None:intergenic 40.0%
CCTGGGTAAAGTAATGTTGT+AGG + chr8_1:18303683-18303702 Msa1183100:intron 40.0%
!! TATGAAGCACTGCACATACA+CGG + chr8_1:18303739-18303758 Msa1183100:intron 40.0%
! CACTTGTGTCGGTATTTAGT+TGG + chr8_1:18303817-18303836 Msa1183100:intron 40.0%
! ATTGAAGGCATGTCAATGTC+TGG - chr8_1:18303853-18303872 None:intergenic 40.0%
TGACATGCCTTCAATTGTGT+CGG + chr8_1:18303858-18303877 Msa1183100:intron 40.0%
! ATTGAAGGCATGTCAATGTC+TGG - chr8_1:18303853-18303872 None:intergenic 40.0%
ATGAGAAGACAAGCACATCA+AGG - chr8_1:18304006-18304025 None:intergenic 40.0%
!! AAGACAATGTTACTGGTTCC+AGG + chr8_1:18304120-18304139 Msa1183100:intron 40.0%
GTTAAGCACAGTAAATTGCC+TGG - chr8_1:18304141-18304160 None:intergenic 40.0%
AAGTTGAACAGTTGACCATG+TGG + chr8_1:18304244-18304263 Msa1183100:intron 40.0%
AAAGCTCAGAAATCACCACA+TGG - chr8_1:18304262-18304281 None:intergenic 40.0%
!! GCAACAGCTCTTTTAAGGAA+TGG + chr8_1:18304327-18304346 Msa1183100:intron 40.0%
! AAGCCTTATCCCATTAAGTG+GGG - chr8_1:18304494-18304513 None:intergenic 40.0%
! CAAGCCTTATCCCATTAAGT+GGG - chr8_1:18304495-18304514 None:intergenic 40.0%
AGATGGTAGAGTCTCATCAT+AGG + chr8_1:18304622-18304641 Msa1183100:intron 40.0%
GATGGTAGAGTCTCATCATA+GGG + chr8_1:18304623-18304642 Msa1183100:intron 40.0%
ATGGTAGAGTCTCATCATAG+GGG + chr8_1:18304624-18304643 Msa1183100:intron 40.0%
AAGACCCACAAATATCGACA+AGG + chr8_1:18304657-18304676 Msa1183100:intron 40.0%
CTCTCCTTGTCGATATTTGT+GGG - chr8_1:18304664-18304683 None:intergenic 40.0%
ACTCTCCTTGTCGATATTTG+TGG - chr8_1:18304665-18304684 None:intergenic 40.0%
TTGACCACACCTAGTAAGAA+AGG + chr8_1:18304831-18304850 Msa1183100:intron 40.0%
TGACCACACCTAGTAAGAAA+GGG + chr8_1:18304832-18304851 Msa1183100:intron 40.0%
AAACCCTTTCTTACTAGGTG+TGG - chr8_1:18304838-18304857 None:intergenic 40.0%
TTTCATGGCACACTATTTGG+AGG + chr8_1:18305208-18305227 Msa1183100:intron 40.0%
AGATTTGTACGATTGCTGCA+TGG - chr8_1:18305238-18305257 None:intergenic 40.0%
GAAAAAAATAACCACAGGGC+AGG - chr8_1:18305431-18305450 None:intergenic 40.0%
GTTATAATCCCAGCTACAAC+AGG + chr8_1:18305530-18305549 Msa1183100:CDS 40.0%
CAATTGTTGCAACATGTCCT+GGG - chr8_1:18305571-18305590 None:intergenic 40.0%
ACAATTGCAGAGTTGAAACC+TGG + chr8_1:18305584-18305603 Msa1183100:CDS 40.0%
CAATTGCAGAGTTGAAACCT+GGG + chr8_1:18305585-18305604 Msa1183100:CDS 40.0%
AATTGCAGAGTTGAAACCTG+GGG + chr8_1:18305586-18305605 Msa1183100:CDS 40.0%
GGGTCATGATTGTACAAGAA+GGG + chr8_1:18305606-18305625 Msa1183100:CDS 40.0%
TATCAGCAACAGAGTTTGCA+TGG - chr8_1:18305676-18305695 None:intergenic 40.0%
TGCTGATATAATCGCTGTTG+AGG + chr8_1:18305688-18305707 Msa1183100:CDS 40.0%
CTTGCATCAATTTGATCCAG+TGG - chr8_1:18305719-18305738 None:intergenic 40.0%
! TTGAGTTGTTTATTTCCCCC+CGG + chr8_1:18305889-18305908 Msa1183100:three_prime_UTR 40.0%
ACACTGAGACAAAATAACCG+GGG - chr8_1:18305909-18305928 None:intergenic 40.0%
AACGAAGGAGGAATCAGTGA+CGG - chr8_1:18302128-18302147 None:intergenic 45.0%
ATTCCTCCTTCGTTGAAGCT+TGG + chr8_1:18302134-18302153 Msa1183100:CDS 45.0%
ATTCCAAGCTTCAACGAAGG+AGG - chr8_1:18302140-18302159 None:intergenic 45.0%
CGAGATTTGATGAAAGCGAG+GGG - chr8_1:18302196-18302215 None:intergenic 45.0%
GACGAGATTTGATGAAAGCG+AGG - chr8_1:18302198-18302217 None:intergenic 45.0%
GGAAGAGTAGAAGGAATAGG+AGG - chr8_1:18302220-18302239 None:intergenic 45.0%
GTGGGAAGAGTAGAAGGAAT+AGG - chr8_1:18302223-18302242 None:intergenic 45.0%
! AGTTTGGTGGGAAGAGTAGA+AGG - chr8_1:18302229-18302248 None:intergenic 45.0%
! GCGGACAATTGAGAAGCATA+AGG - chr8_1:18302271-18302290 None:intergenic 45.0%
GTGATCACAGCCCTAGAAAA+TGG - chr8_1:18303378-18303397 None:intergenic 45.0%
GTGTATGTGCAGTGCTTCAT+AGG - chr8_1:18303740-18303759 None:intergenic 45.0%
GTGGTGATTTCTGAGCTTTG+AGG + chr8_1:18304263-18304282 Msa1183100:intron 45.0%
!! ATTAAGTGGGGTTGGCTACA+TGG - chr8_1:18304482-18304501 None:intergenic 45.0%
ATGTAGCCAACCCCACTTAA+TGG + chr8_1:18304481-18304500 Msa1183100:intron 45.0%
TGTAGCCAACCCCACTTAAT+GGG + chr8_1:18304482-18304501 Msa1183100:intron 45.0%
CTTATCCCATTAAGTGGGGT+TGG - chr8_1:18304490-18304509 None:intergenic 45.0%
CAACCCCACTTAATGGGATA+AGG + chr8_1:18304488-18304507 Msa1183100:intron 45.0%
! CCAAGCCTTATCCCATTAAG+TGG - chr8_1:18304496-18304515 None:intergenic 45.0%
CCACTTAATGGGATAAGGCT+TGG + chr8_1:18304493-18304512 Msa1183100:intron 45.0%
TGGTAGAGTCTCATCATAGG+GGG + chr8_1:18304625-18304644 Msa1183100:intron 45.0%
CTCTCTGAGCCACTAACTAT+TGG - chr8_1:18304707-18304726 None:intergenic 45.0%
TGGATATAAGCAGTCTCAGC+AGG + chr8_1:18304763-18304782 Msa1183100:intron 45.0%
CTAGGTGTGGTCAACTACAT+GGG - chr8_1:18304825-18304844 None:intergenic 45.0%
ACTAGGTGTGGTCAACTACA+TGG - chr8_1:18304826-18304845 None:intergenic 45.0%
TGTGGTTCATGGATTCCACA+AGG - chr8_1:18305281-18305300 None:intergenic 45.0%
GCAATTGTTGCAACATGTCC+TGG - chr8_1:18305572-18305591 None:intergenic 45.0%
TCTTGTACAATCATGACCCC+AGG - chr8_1:18305605-18305624 None:intergenic 45.0%
GGGGTCATGATTGTACAAGA+AGG + chr8_1:18305605-18305624 Msa1183100:CDS 45.0%
CAGTTCAGCGACAACTGATT+TGG + chr8_1:18305778-18305797 Msa1183100:CDS 45.0%
GAGAAAGCTGAAGCTCAGAT+TGG + chr8_1:18305800-18305819 Msa1183100:CDS 45.0%
ACTGAGACAAAATAACCGGG+GGG - chr8_1:18305907-18305926 None:intergenic 45.0%
CACTGAGACAAAATAACCGG+GGG - chr8_1:18305908-18305927 None:intergenic 45.0%
! AACAACTTCCATCTAGCTCC+AGG + chr8_1:18306000-18306019 Msa1183100:three_prime_UTR 45.0%
CAATGTCTTGCTCAACTTCC+TGG - chr8_1:18306021-18306040 None:intergenic 45.0%
GTTGTAGGGTTAGATCGCTC+GGG - chr8_1:18302025-18302044 None:intergenic 50.0%
GGTTGTAGGGTTAGATCGCT+CGG - chr8_1:18302026-18302045 None:intergenic 50.0%
AGAGAAGGGAAGATGTAGCG+CGG - chr8_1:18302060-18302079 None:intergenic 50.0%
TAGCTACATCGGTGGAGAAG+CGG - chr8_1:18302102-18302121 None:intergenic 50.0%
ACGAAGGAGGAATCAGTGAC+GGG - chr8_1:18302127-18302146 None:intergenic 50.0%
!! ATGAAAGCGAGGGGTGTCTT+AGG - chr8_1:18302187-18302206 None:intergenic 50.0%
CAGCCCTAGAAAATGGAGCA+TGG - chr8_1:18303371-18303390 None:intergenic 50.0%
AGGCATGTCAATGTCTGGCA+CGG - chr8_1:18303848-18303867 None:intergenic 50.0%
!! GGTATTATGTTGGTGCCACC+AGG + chr8_1:18303879-18303898 Msa1183100:intron 50.0%
GTCTCATCATAGGGGGTTTG+TGG + chr8_1:18304632-18304651 Msa1183100:intron 50.0%
GTCTCAGCAGGCATGATTCA+TGG + chr8_1:18304775-18304794 Msa1183100:intron 50.0%
CAGCAGGCATGATTCATGGT+AGG + chr8_1:18304779-18304798 Msa1183100:intron 50.0%
! TGATGCAAGCCTTGTGCAGA+AGG + chr8_1:18305730-18305749 Msa1183100:CDS 50.0%
! GATGCAAGCCTTGTGCAGAA+GGG + chr8_1:18305731-18305750 Msa1183100:CDS 50.0%
CTTGAAGACCCTTCTGCACA+AGG - chr8_1:18305742-18305761 None:intergenic 50.0%
TGTCGCTGAACTGAGCTTCT+GGG - chr8_1:18305771-18305790 None:intergenic 50.0%
TTGTCGCTGAACTGAGCTTC+TGG - chr8_1:18305772-18305791 None:intergenic 50.0%
CTCAACTTCCTGGAGCTAGA+TGG - chr8_1:18306011-18306030 None:intergenic 50.0%
GGCGGAACATGGTGGTTGTA+GGG - chr8_1:18302039-18302058 None:intergenic 55.0%
! AGTGACGGGGGTAGCTACAT+CGG - chr8_1:18302113-18302132 None:intergenic 55.0%
GAAGGAGGAATCAGTGACGG+GGG - chr8_1:18302125-18302144 None:intergenic 55.0%
CGAAGGAGGAATCAGTGACG+GGG - chr8_1:18302126-18302145 None:intergenic 55.0%
!! AAAGCGAGGGGTGTCTTAGG+TGG - chr8_1:18302184-18302203 None:intergenic 55.0%
!! GGTGTCATTAGGGGCCTGTT+TGG + chr8_1:18302888-18302907 Msa1183100:intron 55.0%
CATGTCAATGTCTGGCACGG+TGG - chr8_1:18303845-18303864 None:intergenic 55.0%
CATGTCAATGTCTGGCCTGG+TGG - chr8_1:18303897-18303916 None:intergenic 55.0%
AGGCATGTCAATGTCTGGCC+TGG - chr8_1:18303900-18303919 None:intergenic 55.0%
CCATCTGGCCTGTTGTAGCT+GGG - chr8_1:18305541-18305560 None:intergenic 55.0%
CCAGCTACAACAGGCCAGAT+GGG + chr8_1:18305539-18305558 Msa1183100:CDS 55.0%
GTCCTGGGAGAATACCCATC+TGG - chr8_1:18305556-18305575 None:intergenic 55.0%
CGGCGGAACATGGTGGTTGT+AGG - chr8_1:18302040-18302059 None:intergenic 60.0%
AGATGTAGCGCGGCGGAACA+TGG - chr8_1:18302050-18302069 None:intergenic 60.0%
GAAGGGAAGATGTAGCGCGG+CGG - chr8_1:18302057-18302076 None:intergenic 60.0%
CCCAGCTACAACAGGCCAGA+TGG + chr8_1:18305538-18305557 Msa1183100:CDS 60.0%
CCCATCTGGCCTGTTGTAGC+TGG - chr8_1:18305542-18305561 None:intergenic 60.0%
GGCCAGATGGGTATTCTCCC+AGG + chr8_1:18305551-18305570 Msa1183100:CDS 60.0%
CGCTGTTGAGGCTGTTCCAC+TGG + chr8_1:18305700-18305719 Msa1183100:CDS 60.0%
GATCGCTCGGGCTCGCAAGT+CGG - chr8_1:18302013-18302032 None:intergenic 65.0%
TGTAGCGCGGCGGAACATGG+TGG - chr8_1:18302047-18302066 None:intergenic 65.0%
ATCGGTGGAGAAGCGGCGAG+TGG - chr8_1:18302095-18302114 None:intergenic 65.0%
GACGGGGGTAGCTACATCGG+TGG - chr8_1:18302110-18302129 None:intergenic 65.0%
GCTGCTATCTCCCTGCCCTG+TGG + chr8_1:18305417-18305436 Msa1183100:intron 65.0%
GGCGACGGCGCGTGAGAGAA+GGG - chr8_1:18302074-18302093 None:intergenic 70.0%
TGGCGACGGCGCGTGAGAGA+AGG - chr8_1:18302075-18302094 None:intergenic 70.0%
GGAGAAGCGGCGAGTGGCGA+CGG - chr8_1:18302089-18302108 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 18301912 18306108 18301912 ID=Msa1183100;Name=Msa1183100
chr8_1 mRNA 18301912 18306108 18301912 ID=Msa1183100-mRNA-1;Parent=Msa1183100;Name=Msa1183100-mRNA-1;_AED=0.00;_eAED=0.00;_QI=137|1|1|1|1|1|2|243|197
chr8_1 exon 18301912 18302297 18301912 ID=Msa1183100-mRNA-1:exon:6984;Parent=Msa1183100-mRNA-1
chr8_1 exon 18305521 18306108 18305521 ID=Msa1183100-mRNA-1:exon:6985;Parent=Msa1183100-mRNA-1
chr8_1 five_prime_UTR 18301912 18302048 18301912 ID=Msa1183100-mRNA-1:five_prime_utr;Parent=Msa1183100-mRNA-1
chr8_1 CDS 18302049 18302297 18302049 ID=Msa1183100-mRNA-1:cds;Parent=Msa1183100-mRNA-1
chr8_1 CDS 18305521 18305865 18305521 ID=Msa1183100-mRNA-1:cds;Parent=Msa1183100-mRNA-1
chr8_1 three_prime_UTR 18305866 18306108 18305866 ID=Msa1183100-mRNA-1:three_prime_utr;Parent=Msa1183100-mRNA-1
Gene Sequence

>Msa1183100

ATGTTCCGCCGCGCTACATCTTCCCTTCTCTCACGCGCCGTCGCCACTCGCCGCTTCTCCACCGATGTAGCTACCCCCGTCACTGATTCCTCCTTCGTTGAAGCTTGGAATAAAGTTAGCCCCAATCTTGATCCACCTAAGACACCCCTCGCTTTCATCAAATCTCGTCCTCCTATTCCTTCTACTCTTCCCACCAAACTCACTGTCAATTTCGTTCTTCCTTATGCTTCTCAATTGTCCGCTAAAGAGGTTGATCTGGTTATAATCCCAGCTACAACAGGCCAGATGGGTATTCTCCCAGGACATGTTGCAACAATTGCAGAGTTGAAACCTGGGGTCATGATTGTACAAGAAGGGAATGATTCAACCAAATATTTTGTAAGCAGTGGCTTCGCTTTCGTCCATGCAAACTCTGTTGCTGATATAATCGCTGTTGAGGCTGTTCCACTGGATCAAATTGATGCAAGCCTTGTGCAGAAGGGTCTTCAAGAGTTCACCCAGAAGCTCAGTTCAGCGACAACTGATTTGGAGAAAGCTGAAGCTCAGATTGGAGTTGATGTGCATAGTGCTCTCAACTCAGCTCTTACAGCCTAA

Protein sequence

>Msa1183100

MFRRATSSLLSRAVATRRFSTDVATPVTDSSFVEAWNKVSPNLDPPKTPLAFIKSRPPIPSTLPTKLTVNFVLPYASQLSAKEVDLVIIPATTGQMGILPGHVATIAELKPGVMIVQEGNDSTKYFVSSGFAFVHANSVADIIAVEAVPLDQIDASLVQKGLQEFTQKLSSATTDLEKAEAQIGVDVHSALNSALTA*