AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0371590

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371590 MtrunA17_Chr3g0118671 85.146 478 71 0 1 478 1 478 0.0 875
Msa0371590 MtrunA17_Chr3g0118711 85.084 476 71 0 3 478 10 485 0.0 868
Msa0371590 MtrunA17_Chr3g0118771 84.696 477 73 0 3 479 18 494 0.0 857
Msa0371590 MtrunA17_Chr3g0118691 82.463 479 84 0 1 479 10 488 0.0 852
Msa0371590 MtrunA17_Chr3g0118701 82.255 479 85 0 1 479 10 488 0.0 848
Msa0371590 MtrunA17_Chr3g0118751 79.541 479 69 2 1 479 1 450 0.0 789
Msa0371590 MtrunA17_Chr3g0118661 66.876 477 157 1 3 479 10 485 0.0 655
Msa0371590 MtrunA17_Chr5g0426431 54.565 471 208 5 6 474 12 478 0.0 547
Msa0371590 MtrunA17_Chr3g0092641 53.390 472 214 5 5 474 11 478 0.0 535
Msa0371590 MtrunA17_Chr3g0118721 84.407 295 46 0 185 479 1 295 0.0 534
Msa0371590 MtrunA17_Chr3g0078841 50.737 475 230 3 2 474 6 478 0.0 519
Msa0371590 MtrunA17_Chr6g0454341 50.316 475 232 3 2 474 6 478 4.59e-180 513
Msa0371590 MtrunA17_Chr6g0454331 50.833 480 226 4 2 474 3 479 1.72e-176 504
Msa0371590 MtrunA17_Chr6g0454191 50.209 478 229 5 3 474 7 481 3.09e-176 503
Msa0371590 MtrunA17_Chr8g0336331 50.000 474 234 3 2 474 6 477 2.05e-175 501
Msa0371590 MtrunA17_Chr2g0278711 49.684 475 231 5 3 474 8 477 8.82e-174 497
Msa0371590 MtrunA17_Chr6g0454321 48.963 482 236 4 2 475 6 485 1.21e-173 503
Msa0371590 MtrunA17_Chr6g0454321 48.780 123 58 2 3 120 501 623 7.22e-29 120
Msa0371590 MtrunA17_Chr6g0454401 49.269 479 234 4 2 474 6 481 3.91e-173 495
Msa0371590 MtrunA17_Chr6g0454301 50.316 475 232 3 2 474 259 731 2.25e-171 499
Msa0371590 MtrunA17_Chr6g0454301 55.022 229 100 3 244 472 3 228 5.48e-84 273
Msa0371590 MtrunA17_Chr6g0454201 51.471 476 223 4 4 474 9 481 2.42e-169 486
Msa0371590 MtrunA17_Chr4g0050341 48.632 475 238 4 4 473 17 490 4.81e-169 485
Msa0371590 MtrunA17_Chr6g0454181 48.008 477 240 4 3 474 7 480 5.18e-169 485
Msa0371590 MtrunA17_Chr6g0453951 49.372 478 234 4 2 474 53 527 6.13e-169 486
Msa0371590 MtrunA17_Chr6g0454361 50.840 476 226 4 4 474 9 481 1.08e-167 481
Msa0371590 MtrunA17_Chr6g0454211 50.000 478 231 4 2 474 293 767 4.01e-167 490
Msa0371590 MtrunA17_Chr6g0454211 35.143 350 142 4 124 473 3 267 3.53e-58 205
Msa0371590 MtrunA17_Chr6g0454291 49.372 478 234 4 2 474 3 477 1.11e-165 476
Msa0371590 MtrunA17_Chr6g0453961 48.008 477 239 5 4 474 17 490 1.79e-165 476
Msa0371590 MtrunA17_Chr8g0359821 47.269 476 245 3 2 474 6 478 2.05e-163 471
Msa0371590 MtrunA17_Chr6g0454351 47.699 478 225 5 2 474 8 465 1.06e-162 468
Msa0371590 MtrunA17_Chr6g0454151 48.649 481 237 5 2 477 6 481 7.76e-158 456
Msa0371590 MtrunA17_Chr6g0454261 47.071 478 245 4 2 474 6 480 1.28e-156 453
Msa0371590 MtrunA17_Chr6g0452771 47.379 477 243 4 3 474 7 480 6.74e-156 451
Msa0371590 MtrunA17_Chr6g0454141 46.025 478 250 4 2 474 6 480 1.04e-155 451
Msa0371590 MtrunA17_Chr6g0454121 46.526 475 247 4 4 474 8 479 8.33e-152 441
Msa0371590 MtrunA17_Chr7g0217881 46.250 480 230 6 1 474 5 462 8.72e-151 438
Msa0371590 MtrunA17_Chr6g0454131 45.895 475 250 4 4 474 8 479 1.05e-150 438
Msa0371590 MtrunA17_Chr5g0423981 45.493 477 215 7 4 474 8 445 7.77e-146 424
Msa0371590 MtrunA17_Chr6g0454251 46.465 396 204 4 2 392 3 395 3.32e-134 393
Msa0371590 MtrunA17_Chr5g0426401 51.603 312 144 5 166 474 4 311 1.50e-112 335
Msa0371590 MtrunA17_Chr6g0454271 51.724 290 137 2 185 474 1 287 1.04e-103 311
Msa0371590 MtrunA17_Chr8g0355011 42.424 363 164 3 112 474 45 362 7.39e-101 306
Msa0371590 MtrunA17_Chr5g0412131 36.555 476 278 11 5 473 11 469 3.40e-93 290
Msa0371590 MtrunA17_Chr6g0454221 54.506 233 104 2 244 476 3 233 1.68e-88 273
Msa0371590 MtrunA17_Chr5g0412101 35.924 476 282 10 5 473 11 470 2.30e-88 278
Msa0371590 MtrunA17_Chr6g0454171 42.262 336 143 5 143 474 22 310 5.97e-88 271
Msa0371590 MtrunA17_Chr3g0112761 34.534 472 277 10 6 474 8 450 3.87e-86 272
Msa0371590 MtrunA17_Chr5g0412111 34.937 478 286 11 3 473 2 461 5.67e-86 271
Msa0371590 MtrunA17_Chr3g0112771 33.333 471 280 9 7 474 13 452 3.16e-85 270
Msa0371590 MtrunA17_Chr4g0032331 32.438 484 283 11 4 478 6 454 3.54e-77 248
Msa0371590 MtrunA17_Chr5g0414331 31.942 479 285 10 6 477 13 457 1.44e-74 242
Msa0371590 MtrunA17_Chr5g0414321 31.198 484 282 10 6 477 11 455 9.94e-73 237
Msa0371590 MtrunA17_Chr8g0336271 45.607 239 129 1 2 239 6 244 3.41e-72 230
Msa0371590 MtrunA17_Chr7g0218811 31.635 471 279 13 5 470 14 446 2.78e-71 233
Msa0371590 MtrunA17_Chr7g0250001 29.814 483 297 11 1 475 1 449 6.07e-71 232
Msa0371590 MtrunA17_Chr7g0249981 29.959 484 297 11 4 479 23 472 7.73e-71 233
Msa0371590 MtrunA17_Chr3g0098111 28.542 487 315 11 6 479 9 475 6.23e-69 228
Msa0371590 MtrunA17_Chr7g0218821 30.480 479 287 13 5 471 4 448 7.03e-69 226
Msa0371590 MtrunA17_Chr6g0464881 29.532 491 286 12 2 474 7 455 1.13e-67 224
Msa0371590 MtrunA17_Chr6g0464921 30.353 481 288 12 5 473 10 455 4.10e-67 222
Msa0371590 MtrunA17_Chr8g0365811 30.309 485 297 15 7 473 496 957 7.28e-67 231
Msa0371590 MtrunA17_Chr8g0365811 29.437 462 287 13 6 448 9 450 2.33e-61 216
Msa0371590 MtrunA17_Chr7g0218831 31.590 478 269 15 5 470 5 436 8.83e-67 221
Msa0371590 MtrunA17_Chr7g0218791 31.172 478 272 15 5 466 4 440 1.60e-66 220
Msa0371590 MtrunA17_Chr7g0218841 31.799 478 269 16 5 470 5 437 5.40e-66 219
Msa0371590 MtrunA17_Chr1g0207971 29.098 488 290 14 6 476 8 456 6.93e-65 216
Msa0371590 MtrunA17_Chr6g0454371 56.395 172 74 1 303 474 1 171 7.85e-65 207
Msa0371590 MtrunA17_Chr6g0454231 45.690 232 124 1 2 231 246 477 8.74e-65 216
Msa0371590 MtrunA17_Chr6g0454231 42.969 256 104 4 220 474 5 219 3.14e-60 204
Msa0371590 MtrunA17_Chr1g0161351 29.485 485 301 15 6 473 37 497 5.14e-64 215
Msa0371590 MtrunA17_Chr1g0207831 29.920 498 287 15 7 479 9 469 5.20e-64 214
Msa0371590 MtrunA17_Chr1g0207861 29.193 483 305 12 6 473 8 468 5.91e-64 214
Msa0371590 MtrunA17_Chr6g0464871 29.583 480 296 12 6 476 23 469 1.26e-63 213
Msa0371590 MtrunA17_Chr6g0464841 30.042 476 287 12 6 470 11 451 2.92e-63 212
Msa0371590 MtrunA17_Chr1g0207981 29.424 486 301 14 6 474 13 473 4.78e-63 212
Msa0371590 MtrunA17_Chr6g0464861 30.625 480 286 12 2 470 7 450 9.97e-63 211
Msa0371590 MtrunA17_Chr8g0380531 28.512 477 303 13 6 473 10 457 1.29e-61 207
Msa0371590 MtrunA17_Chr1g0207951 28.953 487 293 13 6 476 124 573 1.48e-61 217
Msa0371590 MtrunA17_Chr1g0207951 26.844 488 314 10 6 479 656 1114 4.83e-57 204
Msa0371590 MtrunA17_Chr6g0453981 42.060 233 132 2 123 355 2 231 2.14e-60 197
Msa0371590 MtrunA17_Chr5g0426411 53.939 165 75 1 2 165 8 172 7.97e-60 194
Msa0371590 MtrunA17_Chr5g0401721 28.195 493 306 14 7 477 9 475 9.75e-60 203
Msa0371590 MtrunA17_Chr8g0377921 29.175 497 291 14 5 474 2 464 2.25e-59 202
Msa0371590 MtrunA17_Chr3g0121991 28.106 491 316 14 1 473 74 545 5.99e-58 200
Msa0371590 MtrunA17_Chr4g0053321 28.340 494 306 13 2 477 20 483 1.10e-56 196
Msa0371590 MtrunA17_Chr3g0122001 28.803 493 311 13 1 473 1 473 1.47e-56 202
Msa0371590 MtrunA17_Chr3g0122001 28.455 492 313 14 1 473 481 952 3.27e-56 201
Msa0371590 MtrunA17_Chr4g0053501 28.542 487 304 14 6 477 11 468 1.83e-56 195
Msa0371590 MtrunA17_Chr4g0044511 28.889 495 299 14 2 471 36 502 6.53e-56 194
Msa0371590 MtrunA17_Chr8g0336261 57.971 138 57 1 303 440 1 137 9.69e-56 182
Msa0371590 MtrunA17_Chr3g0118731 77.778 108 24 0 58 165 28 135 1.44e-55 182
Msa0371590 MtrunA17_Chr6g0454281 47.895 190 94 2 2 186 6 195 2.73e-55 183
Msa0371590 MtrunA17_Chr8g0377941 29.243 489 295 13 7 476 8 464 2.99e-55 191
Msa0371590 MtrunA17_Chr5g0393591 28.092 477 276 9 6 473 17 435 1.31e-54 189
Msa0371590 MtrunA17_Chr5g0431441 29.132 484 295 14 6 475 18 467 4.09e-54 188
Msa0371590 MtrunA17_Chr7g0232401 27.160 486 300 13 1 462 1 456 1.22e-53 187
Msa0371590 MtrunA17_Chr1g0207931 35.659 258 155 3 223 473 244 497 2.44e-53 187
Msa0371590 MtrunA17_Chr6g0453941 46.597 191 99 2 144 333 75 263 7.43e-53 179
Msa0371590 MtrunA17_Chr7g0275681 29.191 507 290 15 5 476 11 483 8.68e-53 185
Msa0371590 MtrunA17_Chr8g0336741 30.223 493 283 15 6 472 13 470 1.16e-52 184
Msa0371590 MtrunA17_Chr5g0440421 28.767 511 306 19 2 475 6 495 1.58e-52 184
Msa0371590 MtrunA17_Chr7g0232411 28.715 498 289 16 1 469 1 461 1.74e-52 184
Msa0371590 MtrunA17_Chr4g0072771 26.360 478 311 12 3 473 22 465 2.25e-52 183
Msa0371590 MtrunA17_Chr7g0265141 29.901 505 291 15 6 474 9 486 4.86e-52 183
Msa0371590 MtrunA17_Chr7g0265041 29.365 504 306 14 5 478 10 493 5.38e-52 183
Msa0371590 MtrunA17_Chr7g0249931 27.801 482 300 15 6 475 40 485 1.90e-51 181
Msa0371590 MtrunA17_Chr7g0232391 29.026 503 287 17 1 472 1 464 1.91e-51 181
Msa0371590 MtrunA17_Chr7g0232331 27.888 502 297 17 1 473 1 466 2.08e-51 181
Msa0371590 MtrunA17_Chr5g0419761 30.237 506 296 17 6 478 9 490 3.25e-51 181
Msa0371590 MtrunA17_Chr1g0153451 28.827 503 299 16 1 477 1 470 6.82e-51 179
Msa0371590 MtrunA17_Chr8g0366391 29.175 497 310 15 6 479 9 486 1.07e-50 179
Msa0371590 MtrunA17_Chr6g0449931 30.556 504 282 17 1 473 1 467 6.82e-50 177
Msa0371590 MtrunA17_Chr6g0486251 28.313 498 296 14 1 472 1 463 1.09e-49 176
Msa0371590 MtrunA17_Chr6g0486201 28.313 498 296 14 1 472 1 463 1.09e-49 176
Msa0371590 MtrunA17_Chr7g0243681 29.032 496 291 18 6 470 11 476 1.86e-49 176
Msa0371590 MtrunA17_Chr6g0462571 28.195 493 290 14 4 469 2 457 2.99e-49 175
Msa0371590 MtrunA17_Chr4g0072761 27.197 478 298 12 6 473 15 452 5.71e-49 174
Msa0371590 MtrunA17_Chr5g0431361 28.395 486 286 17 6 473 12 453 8.88e-49 173
Msa0371590 MtrunA17_Chr8g0373301 30.072 419 244 12 72 469 72 462 2.74e-48 172
Msa0371590 MtrunA17_Chr8g0336651 28.457 499 294 14 1 472 1 463 4.80e-48 178
Msa0371590 MtrunA17_Chr8g0336651 27.565 497 295 13 6 472 781 1242 2.97e-47 176
Msa0371590 MtrunA17_Chr8g0336651 32.171 258 135 5 223 472 548 773 6.06e-35 139
Msa0371590 MtrunA17_Chr7g0243931 28.743 501 305 16 2 473 13 490 5.42e-48 172
Msa0371590 MtrunA17_Chr7g0232341 27.984 486 280 17 1 455 1 447 6.55e-48 171
Msa0371590 MtrunA17_Chr8g0336691 27.634 503 285 15 6 472 919 1378 9.78e-48 177
Msa0371590 MtrunA17_Chr8g0336691 26.000 500 307 12 1 472 8 472 9.32e-47 174
Msa0371590 MtrunA17_Chr8g0336691 27.160 486 281 15 6 472 480 911 2.08e-45 170
Msa0371590 MtrunA17_Chr8g0335141 28.340 494 304 16 1 473 4 468 1.06e-47 171
Msa0371590 MtrunA17_Chr8g0336731 29.735 491 284 15 8 472 34 489 1.10e-47 171
Msa0371590 MtrunA17_Chr7g0243631 28.112 498 304 16 6 473 13 486 1.52e-47 171
Msa0371590 MtrunA17_Chr8g0335161 27.309 498 311 15 1 477 1 468 2.42e-47 170
Msa0371590 MtrunA17_Chr5g0448551 26.457 446 290 11 3 441 4 418 4.68e-47 169
Msa0371590 MtrunA17_Chr7g0243771 29.249 506 294 16 1 473 1 475 8.82e-47 169
Msa0371590 MtrunA17_Chr8g0334851 27.800 500 301 14 1 472 1 468 9.36e-47 168
Msa0371590 MtrunA17_Chr6g0459311 27.455 499 299 17 1 472 8 470 1.46e-46 168
Msa0371590 MtrunA17_Chr6g0462541 29.006 493 282 15 7 469 5 459 1.47e-46 168
Msa0371590 MtrunA17_Chr7g0243951 28.287 502 301 17 4 473 9 483 1.53e-46 168
Msa0371590 MtrunA17_Chr6g0462551 27.495 491 299 15 4 469 2 460 2.40e-46 167
Msa0371590 MtrunA17_Chr5g0431401 27.383 493 287 15 2 473 6 448 2.45e-46 167
Msa0371590 MtrunA17_Chr7g0243801 29.563 504 291 16 3 473 4 476 4.18e-46 167
Msa0371590 MtrunA17_Chr4g0060511 29.200 500 299 17 6 473 11 487 8.37e-46 166
Msa0371590 MtrunA17_Chr5g0431421 27.699 491 290 14 2 474 6 449 2.08e-45 164
Msa0371590 MtrunA17_Chr7g0265101 28.911 505 311 18 2 477 5 490 3.02e-45 165
Msa0371590 MtrunA17_Chr5g0442581 28.125 512 302 17 3 479 2 482 3.53e-45 165
Msa0371590 MtrunA17_Chr6g0462531 26.721 494 303 14 4 471 2 462 4.05e-45 164
Msa0371590 MtrunA17_Chr4g0011051 29.389 507 303 19 1 474 4 488 4.47e-45 164
Msa0371590 MtrunA17_Chr5g0428081 28.163 490 303 13 9 473 14 479 4.55e-45 164
Msa0371590 MtrunA17_Chr7g0275511 29.577 497 285 15 5 472 14 474 5.23e-45 164
Msa0371590 MtrunA17_Chr8g0339631 27.869 427 256 12 64 462 55 457 7.91e-45 163
Msa0371590 MtrunA17_Chr1g0159551 25.840 476 283 14 11 462 19 448 1.07e-44 162
Msa0371590 MtrunA17_Chr7g0265051 28.180 511 305 16 2 477 5 488 1.59e-44 163
Msa0371590 MtrunA17_Chr5g0442561 27.308 509 300 17 3 476 2 475 2.06e-44 162
Msa0371590 MtrunA17_Chr3g0106231 28.306 484 283 17 6 474 18 452 2.24e-44 162
Msa0371590 MtrunA17_Chr7g0265151 27.291 502 314 17 6 478 9 488 2.61e-44 162
Msa0371590 MtrunA17_Chr5g0419771 27.219 507 304 16 6 475 36 514 3.42e-44 162
Msa0371590 MtrunA17_Chr1g0179901 26.693 502 314 18 6 475 16 495 3.54e-44 162
Msa0371590 MtrunA17_Chr7g0249961 34.034 238 142 5 244 475 33 261 3.77e-44 156
Msa0371590 MtrunA17_Chr8g0361371 27.811 507 290 19 2 472 3 469 4.34e-44 161
Msa0371590 MtrunA17_Chr8g0347281 28.337 487 298 13 5 472 17 471 5.41e-44 161
Msa0371590 MtrunA17_Chr5g0431371 27.572 486 287 15 6 473 10 448 5.80e-44 160
Msa0371590 MtrunA17_Chr6g0462521 27.642 492 287 13 4 471 2 448 5.92e-44 160
Msa0371590 MtrunA17_Chr5g0442511 26.706 513 275 16 3 476 46 496 7.20e-44 161
Msa0371590 MtrunA17_Chr7g0243861 27.000 500 307 14 6 473 14 487 9.02e-44 161
Msa0371590 MtrunA17_Chr5g0442601 28.291 509 299 19 3 476 401 878 1.48e-43 164
Msa0371590 MtrunA17_Chr5g0442601 35.519 183 92 5 246 412 164 336 8.65e-26 111
Msa0371590 MtrunA17_Chr4g0014061 28.487 509 281 20 2 470 4 469 1.64e-43 160
Msa0371590 MtrunA17_Chr8g0347271 28.131 487 299 15 5 472 18 472 2.39e-43 159
Msa0371590 MtrunA17_Chr5g0448521 27.202 511 293 19 3 476 2 470 3.88e-43 159
Msa0371590 MtrunA17_Chr1g0173121 25.358 489 302 15 7 473 15 462 4.08e-43 158
Msa0371590 MtrunA17_Chr7g0265111 28.169 497 310 18 6 474 39 516 4.20e-43 160
Msa0371590 MtrunA17_Chr5g0442521 27.326 516 294 18 3 476 2 478 7.09e-43 158
Msa0371590 MtrunA17_Chr2g0294931 27.129 505 307 13 1 473 6 481 8.19e-43 158
Msa0371590 MtrunA17_Chr5g0442541 29.594 517 267 23 3 474 2 466 1.99e-42 156
Msa0371590 MtrunA17_Chr4g0066221 27.767 497 307 15 1 470 6 477 2.13e-42 157
Msa0371590 MtrunA17_Chr8g0339461 29.716 387 227 11 106 469 103 467 3.87e-42 156
Msa0371590 MtrunA17_Chr8g0339451 29.487 390 228 11 97 462 86 452 9.20e-42 155
Msa0371590 MtrunA17_Chr5g0401851 26.400 500 306 15 8 473 12 483 9.51e-42 155
Msa0371590 MtrunA17_Chr4g0044501 27.800 500 310 17 6 479 10 484 1.02e-41 155
Msa0371590 MtrunA17_Chr3g0079731 26.233 507 309 15 1 471 1 478 1.49e-41 154
Msa0371590 MtrunA17_Chr7g0232311 26.494 502 295 15 1 470 1 460 4.89e-41 152
Msa0371590 MtrunA17_Chr8g0374931 27.218 496 302 15 9 473 14 481 5.36e-41 153
Msa0371590 MtrunA17_Chr7g0243761 26.694 487 295 14 6 473 11 454 6.00e-41 152
Msa0371590 MtrunA17_Chr4g0066201 28.543 501 295 17 1 475 13 476 1.90e-40 151
Msa0371590 MtrunA17_Chr4g0044521 28.947 494 283 20 7 471 10 464 2.43e-40 151
Msa0371590 MtrunA17_Chr7g0243781 27.148 512 284 18 3 470 6 472 2.85e-40 151
Msa0371590 MtrunA17_Chr4g0066281 28.099 484 291 15 9 470 15 463 4.88e-40 150
Msa0371590 MtrunA17_Chr4g0066261 26.939 490 305 15 9 470 14 478 7.32e-40 150
Msa0371590 MtrunA17_Chr7g0235051 27.071 495 280 18 6 472 11 452 1.15e-39 149
Msa0371590 MtrunA17_Chr2g0294921 26.653 499 301 15 9 473 163 630 1.81e-39 151
Msa0371590 MtrunA17_Chr8g0334861 25.896 502 302 15 1 472 1 462 2.80e-39 148
Msa0371590 MtrunA17_Chr7g0243871 26.877 506 296 16 3 473 6 472 5.24e-39 147
Msa0371590 MtrunA17_Chr2g0329111 27.181 493 291 17 1 459 1 459 5.39e-39 147
Msa0371590 MtrunA17_Chr6g0454111 41.718 163 92 2 162 323 23 183 1.03e-38 139
Msa0371590 MtrunA17_Chr8g0334831 27.789 493 262 21 1 444 1 448 1.04e-38 147
Msa0371590 MtrunA17_Chr4g0066151 27.364 497 289 15 7 470 19 476 1.13e-38 146
Msa0371590 MtrunA17_Chr1g0153461 36.986 219 119 5 278 477 1 219 1.62e-38 139
Msa0371590 MtrunA17_Chr8g0339601 31.271 291 163 9 194 461 42 318 2.22e-38 142
Msa0371590 MtrunA17_Chr5g0429711 27.935 494 305 16 1 477 6 465 3.44e-38 145
Msa0371590 MtrunA17_Chr5g0416741 25.558 493 318 13 7 473 14 483 7.89e-38 144
Msa0371590 MtrunA17_Chr5g0442491 26.223 511 305 16 3 476 2 477 8.01e-38 144
Msa0371590 MtrunA17_Chr8g0370941 25.296 506 302 17 4 464 5 479 1.64e-37 144
Msa0371590 MtrunA17_Chr8g0374971 26.200 500 294 15 9 470 15 477 1.90e-37 143
Msa0371590 MtrunA17_Chr3g0118741 96.667 60 2 0 1 60 1 60 4.13e-37 130
Msa0371590 MtrunA17_Chr8g0374901 26.815 496 294 18 9 470 15 475 4.70e-37 142
Msa0371590 MtrunA17_Chr5g0420801 26.639 488 310 18 2 473 3 458 4.79e-37 142
Msa0371590 MtrunA17_Chr5g0410941 25.494 506 310 15 1 473 18 489 9.96e-37 141
Msa0371590 MtrunA17_Chr8g0350881 26.854 499 296 14 7 470 13 477 1.70e-36 140
Msa0371590 MtrunA17_Chr5g0429681 27.767 497 307 19 1 477 39 503 1.72e-36 140
Msa0371590 MtrunA17_Chr5g0432731 29.642 307 185 8 181 475 11 298 3.12e-36 135
Msa0371590 MtrunA17_Chr8g0374941 26.721 494 299 17 9 470 952 1414 3.83e-36 142
Msa0371590 MtrunA17_Chr8g0374941 25.833 480 295 16 9 457 14 463 4.62e-32 130
Msa0371590 MtrunA17_Chr8g0374941 25.887 479 292 17 9 455 479 926 1.18e-31 129
Msa0371590 MtrunA17_Chr7g0218311 26.263 495 305 17 9 473 19 483 7.75e-36 139
Msa0371590 MtrunA17_Chr8g0361411 26.501 483 303 18 6 473 8 453 7.88e-36 138
Msa0371590 MtrunA17_Chr6g0463851 26.613 496 300 15 9 470 14 479 8.14e-36 139
Msa0371590 MtrunA17_Chr4g0066131 25.761 493 302 14 7 470 14 471 1.28e-35 138
Msa0371590 MtrunA17_Chr4g0044481 27.273 418 254 11 6 417 27 400 2.14e-35 136
Msa0371590 MtrunA17_Chr4g0042891 26.459 514 283 16 2 472 3 464 3.29e-34 134
Msa0371590 MtrunA17_Chr8g0339441 36.139 202 110 4 280 462 217 418 3.33e-34 133
Msa0371590 MtrunA17_Chr5g0403641 31.359 287 154 9 223 478 236 510 3.36e-34 134
Msa0371590 MtrunA17_Chr5g0416821 25.714 490 310 15 7 473 15 473 5.80e-34 133
Msa0371590 MtrunA17_Chr1g0165701 25.558 493 316 15 7 473 16 483 6.65e-34 133
Msa0371590 MtrunA17_Chr2g0307961 28.016 489 302 20 5 474 12 469 1.16e-33 132
Msa0371590 MtrunA17_Chr7g0241801 28.540 459 259 21 3 450 6 406 3.34e-33 130
Msa0371590 MtrunA17_Chr4g0042931 26.369 493 308 17 2 472 3 462 9.77e-33 129
Msa0371590 MtrunA17_Chr6g0463861 24.248 499 321 15 1 473 6 473 1.92e-32 129
Msa0371590 MtrunA17_Chr8g0382021 24.440 491 302 18 11 473 39 488 2.02e-32 129
Msa0371590 MtrunA17_Chr2g0302961 25.000 500 304 14 6 473 5 465 2.81e-32 128
Msa0371590 MtrunA17_Chr4g0066171 25.703 498 308 15 1 473 16 476 3.02e-32 128
Msa0371590 MtrunA17_Chr6g0463891 25.510 490 324 13 7 473 13 484 5.06e-32 128
Msa0371590 MtrunA17_Chr7g0241781 27.233 459 265 19 3 450 6 406 1.62e-31 125
Msa0371590 MtrunA17_Chr3g0106251 28.852 305 187 7 179 474 11 294 1.66e-31 123
Msa0371590 MtrunA17_Chr7g0243851 34.296 277 154 10 219 473 172 442 2.07e-31 125
Msa0371590 MtrunA17_Chr8g0355221 25.202 496 317 14 7 473 16 486 4.54e-31 125
Msa0371590 MtrunA17_Chr8g0369341 24.248 499 314 16 2 471 3 466 6.35e-31 124
Msa0371590 MtrunA17_Chr3g0079711 36.957 184 97 4 307 471 3 186 1.60e-30 117
Msa0371590 MtrunA17_Chr7g0243711 33.491 212 123 5 279 473 106 316 9.41e-30 119
Msa0371590 MtrunA17_Chr2g0294941 26.648 364 225 11 115 455 17 361 3.35e-29 118
Msa0371590 MtrunA17_Chr8g0367221 27.107 439 260 17 6 424 798 1196 7.44e-29 120
Msa0371590 MtrunA17_Chr8g0367221 26.013 469 286 18 6 449 1288 1720 1.29e-25 111
Msa0371590 MtrunA17_Chr8g0367221 26.591 440 260 20 6 424 12 409 5.37e-25 109
Msa0371590 MtrunA17_Chr1g0196851 24.280 486 285 17 2 454 45 480 1.03e-28 118
Msa0371590 MtrunA17_Chr7g0232351 27.404 416 239 15 1 391 1 378 3.78e-28 115
Msa0371590 MtrunA17_Chr1g0207881 37.879 132 76 1 348 473 253 384 5.84e-28 115
Msa0371590 MtrunA17_Chr8g0336321 27.719 469 276 19 6 447 7 439 7.45e-28 115
Msa0371590 MtrunA17_Chr7g0243911 34.483 203 105 6 277 462 18 209 8.88e-28 110
Msa0371590 MtrunA17_Chr2g0302991 27.852 298 187 6 193 473 176 462 1.14e-27 115
Msa0371590 MtrunA17_Chr8g0336251 27.350 468 279 17 6 447 7 439 1.18e-27 115
Msa0371590 MtrunA17_Chr4g0029131 23.457 486 288 16 1 454 7 440 7.92e-27 114
Msa0371590 MtrunA17_Chr5g0427561 55.952 84 37 0 391 474 2 85 1.02e-26 103
Msa0371590 MtrunA17_Chr6g0482061 25.265 471 323 12 6 461 11 467 3.04e-26 111
Msa0371590 MtrunA17_Chr7g0243611 31.418 261 152 11 185 426 44 296 7.11e-26 107
Msa0371590 MtrunA17_Chr7g0243811 25.641 429 245 14 18 420 1 381 2.76e-25 107
Msa0371590 MtrunA17_Chr6g0454381 36.496 137 87 0 124 260 3 139 2.96e-25 100
Msa0371590 MtrunA17_Chr2g0278721 26.282 468 294 19 6 451 517 955 4.27e-25 109
Msa0371590 MtrunA17_Chr2g0278721 24.124 485 308 17 6 479 15 450 1.00e-21 99.0
Msa0371590 MtrunA17_Chr6g0466831 25.153 489 310 19 6 477 18 467 2.01e-24 105
Msa0371590 MtrunA17_Chr5g0409591 25.051 491 275 17 7 443 5 456 2.66e-24 105
Msa0371590 MtrunA17_Chr6g0464091 25.952 420 266 16 2 407 13 401 4.80e-24 104
Msa0371590 MtrunA17_Chr6g0466841 24.744 489 312 19 6 477 18 467 2.85e-23 102
Msa0371590 MtrunA17_Chr7g0250021 26.316 342 216 10 6 343 12 321 6.21e-23 99.4
Msa0371590 MtrunA17_Chr2g0278741 24.130 460 303 15 6 450 97 525 1.42e-22 100
Msa0371590 MtrunA17_Chr8g0337381 42.742 124 65 2 353 472 3 124 1.46e-22 93.2
Msa0371590 MtrunA17_Chr6g0454391 62.500 64 24 0 366 429 11 74 3.15e-21 89.4
Msa0371590 MtrunA17_Chr5g0431431 28.405 257 158 7 176 429 110 343 1.91e-20 92.8
Msa0371590 MtrunA17_Chr4g0040691 23.260 503 300 20 6 474 8 458 8.94e-20 91.7
Msa0371590 MtrunA17_Chr5g0427571 35.057 174 101 6 282 447 104 273 9.25e-20 89.7
Msa0371590 MtrunA17_Chr4g0029151 28.495 186 121 4 281 454 263 448 3.56e-19 90.1
Msa0371590 MtrunA17_Chr3g0092031 33.846 130 82 2 278 406 1 127 2.10e-18 83.6
Msa0371590 MtrunA17_Chr8g0357361 29.557 203 133 6 216 416 57 251 2.30e-18 85.1
Msa0371590 MtrunA17_Chr2g0283041 26.705 176 121 3 283 450 258 433 2.17e-17 84.3
Msa0371590 MtrunA17_Chr7g0231631 28.054 221 131 5 267 473 53 259 8.02e-17 80.5
Msa0371590 MtrunA17_Chr4g0066141 34.228 149 81 4 339 470 200 348 1.05e-16 81.6
Msa0371590 MtrunA17_Chr4g0069611 34.400 125 78 2 283 406 269 390 1.33e-16 82.0
Msa0371590 MtrunA17_Chr4g0040711 29.630 135 94 1 283 416 261 395 3.26e-16 80.9
Msa0371590 MtrunA17_Chr2g0319761 27.363 201 136 5 283 474 259 458 2.41e-15 78.2
Msa0371590 MtrunA17_Chr1g0207911 25.692 253 163 8 7 251 9 244 3.73e-15 75.5
Msa0371590 MtrunA17_Chr2g0319791 21.730 497 326 20 1 475 1 456 2.48e-14 75.1
Msa0371590 MtrunA17_Chr2g0302851 31.538 130 85 2 278 406 265 391 5.31e-14 73.9
Msa0371590 MtrunA17_Chr4g0039881 26.383 235 153 8 224 450 193 415 2.04e-13 72.0
Msa0371590 MtrunA17_Chr2g0319731 25.871 201 139 5 283 474 276 475 2.36e-13 72.0
Msa0371590 MtrunA17_Chr2g0319801 27.835 194 123 4 283 474 259 437 6.83e-13 70.5
Msa0371590 MtrunA17_Chr2g0319751 21.146 506 323 18 1 476 478 937 8.79e-13 70.9
Msa0371590 MtrunA17_Chr7g0243731 41.176 68 39 1 350 416 6 73 2.71e-12 62.4
Msa0371590 MtrunA17_Chr7g0267931 67.568 37 11 1 11 46 25 61 7.14e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0371590 AT1G22380.1 51.266 474 229 2 2 474 9 481 0.0 530
Msa0371590 AT1G22360.1 49.894 473 235 2 3 474 7 478 0.0 521
Msa0371590 AT1G22340.1 48.529 476 244 1 3 477 10 485 0.0 520
Msa0371590 AT1G22400.1 47.890 474 244 3 3 474 10 482 8.33e-180 513
Msa0371590 AT1G22370.2 49.894 473 230 3 3 474 10 476 3.76e-177 506
Msa0371590 AT1G22360.2 48.626 473 229 3 3 474 7 466 5.88e-175 499
Msa0371590 AT1G78270.1 46.138 479 254 4 3 479 10 486 1.46e-158 459
Msa0371590 AT1G22370.1 49.013 304 153 2 172 474 4 306 1.53e-103 311
Msa0371590 AT3G46660.1 36.667 480 261 13 1 470 6 452 6.19e-87 274
Msa0371590 AT5G59590.1 34.783 483 263 12 3 473 7 449 3.41e-85 269
Msa0371590 AT3G46690.1 35.865 474 267 11 3 471 6 447 1.33e-83 265
Msa0371590 AT3G46670.1 35.062 482 264 14 1 470 1 445 1.93e-83 265
Msa0371590 AT2G36970.1 32.577 485 292 11 3 473 7 470 2.28e-83 266
Msa0371590 AT3G46680.1 36.211 475 266 13 1 470 4 446 1.16e-82 263
Msa0371590 AT3G46650.1 34.105 475 256 10 1 469 5 428 1.56e-81 259
Msa0371590 AT5G59580.1 34.504 484 268 13 4 477 7 451 1.58e-81 260
Msa0371590 AT5G38010.1 33.264 481 279 10 2 473 6 453 1.69e-80 257
Msa0371590 AT3G11340.1 33.193 476 280 10 2 474 5 445 5.75e-78 251
Msa0371590 AT3G46700.1 33.193 476 272 10 3 471 6 442 6.19e-77 248
Msa0371590 AT3G21560.1 31.902 489 286 13 5 473 11 472 1.95e-76 248
Msa0371590 AT5G38040.1 33.761 468 266 12 14 473 18 449 2.97e-76 246
Msa0371590 AT2G28080.1 33.333 474 284 11 10 474 22 472 3.43e-76 247
Msa0371590 AT3G55710.1 32.649 487 279 14 6 478 8 459 1.57e-74 242
Msa0371590 AT3G46720.1 33.612 479 262 13 3 471 6 438 5.93e-74 240
Msa0371590 AT3G55700.1 31.340 485 284 14 6 478 8 455 1.24e-73 239
Msa0371590 AT4G15500.1 31.340 485 289 14 5 474 8 463 1.49e-72 237
Msa0371590 AT5G05880.1 31.435 474 286 10 6 473 8 448 7.59e-72 234
Msa0371590 AT5G05890.1 32.008 478 282 10 6 473 8 452 1.07e-70 232
Msa0371590 AT4G15480.1 31.148 488 288 12 6 473 19 478 2.07e-70 232
Msa0371590 AT4G15490.1 31.911 492 280 16 6 474 8 467 4.64e-69 228
Msa0371590 AT5G05870.1 30.316 475 296 8 6 473 8 454 2.82e-68 226
Msa0371590 AT2G26480.1 30.561 481 286 10 3 474 5 446 1.42e-66 221
Msa0371590 AT5G05860.1 31.712 473 286 9 6 474 9 448 1.42e-66 221
Msa0371590 AT5G05900.1 29.167 480 292 10 6 475 8 449 1.60e-64 216
Msa0371590 AT2G31750.1 29.522 481 300 14 4 475 6 456 5.27e-64 214
Msa0371590 AT2G31750.2 29.522 481 300 14 4 475 6 456 2.19e-63 214
Msa0371590 AT2G43840.1 30.000 480 284 15 6 473 7 446 4.75e-63 211
Msa0371590 AT2G43840.2 29.645 479 287 14 6 473 7 446 5.99e-63 211
Msa0371590 AT2G43820.1 30.021 483 286 15 3 473 4 446 1.79e-62 210
Msa0371590 AT3G02100.1 29.752 484 285 15 4 470 11 456 5.12e-62 209
Msa0371590 AT1G05675.1 30.290 482 291 14 1 470 1 449 3.19e-61 207
Msa0371590 AT1G05680.1 30.146 481 293 13 1 470 1 449 3.11e-60 204
Msa0371590 AT5G17050.1 29.019 479 299 13 6 475 12 458 3.41e-59 202
Msa0371590 AT2G30140.1 30.629 493 279 17 2 477 9 455 4.16e-59 201
Msa0371590 AT2G30140.2 31.034 493 276 17 2 477 9 454 7.00e-59 201
Msa0371590 AT4G14090.1 30.675 489 276 16 3 472 10 454 4.43e-58 199
Msa0371590 AT1G24100.1 29.645 479 299 12 4 473 9 458 7.56e-57 196
Msa0371590 AT1G05560.1 27.959 490 302 13 5 479 4 457 1.79e-55 192
Msa0371590 AT2G31790.1 29.060 468 297 10 3 462 5 445 2.09e-55 191
Msa0371590 AT1G05560.2 27.959 490 302 13 5 479 54 507 5.81e-55 192
Msa0371590 AT2G23250.1 29.498 478 281 17 9 473 1 435 6.45e-55 190
Msa0371590 AT2G30150.2 29.854 479 286 15 6 473 13 452 1.35e-53 187
Msa0371590 AT5G17040.1 27.579 475 299 11 6 474 5 440 1.69e-53 186
Msa0371590 AT2G36800.1 30.539 501 294 18 6 475 12 489 4.28e-53 186
Msa0371590 AT1G05530.1 26.572 493 300 13 4 474 3 455 6.97e-53 185
Msa0371590 AT4G01070.1 29.532 491 276 13 3 462 5 456 9.86e-53 185
Msa0371590 AT1G30530.1 27.004 474 302 11 8 474 15 451 3.03e-52 183
Msa0371590 AT2G36750.1 30.739 501 291 16 6 475 10 485 4.20e-52 184
Msa0371590 AT2G23260.1 27.835 485 298 18 3 473 7 453 4.60e-52 182
Msa0371590 AT4G15550.1 26.572 493 305 13 5 472 12 472 7.65e-52 182
Msa0371590 AT2G30150.1 29.474 475 285 15 10 473 1 436 1.70e-51 181
Msa0371590 AT2G36770.1 27.579 504 306 15 6 476 14 491 1.96e-49 176
Msa0371590 AT2G15480.1 28.200 500 308 14 1 473 5 480 2.33e-49 176
Msa0371590 AT5G37950.1 32.124 386 204 12 21 391 1 343 1.01e-48 171
Msa0371590 AT5G17040.2 31.699 306 194 3 170 474 47 338 1.36e-48 170
Msa0371590 AT2G36780.1 29.365 504 295 16 6 475 14 490 2.22e-48 174
Msa0371590 AT4G34131.1 27.112 509 295 14 3 472 7 478 3.04e-48 173
Msa0371590 AT2G15480.2 28.235 510 305 16 1 473 5 490 3.22e-48 173
Msa0371590 AT5G37950.2 31.662 379 207 10 22 391 2 337 3.86e-48 169
Msa0371590 AT2G15490.3 27.959 490 312 13 6 473 7 477 4.26e-48 172
Msa0371590 AT5G26310.1 29.216 510 272 20 4 472 5 466 1.66e-47 171
Msa0371590 AT5G66690.1 28.655 513 282 20 4 476 5 473 2.28e-47 171
Msa0371590 AT2G15490.1 27.992 493 311 14 6 473 7 480 4.41e-47 170
Msa0371590 AT5G17030.1 25.625 480 313 12 6 475 12 457 2.81e-46 167
Msa0371590 AT3G22250.1 26.964 471 283 14 3 446 5 441 3.85e-46 167
Msa0371590 AT1G01390.1 29.209 493 291 17 5 472 7 466 4.34e-46 167
Msa0371590 AT3G53160.1 28.400 500 309 15 6 477 8 486 4.64e-46 167
Msa0371590 AT1G01390.2 29.209 493 291 17 5 472 24 483 5.92e-46 167
Msa0371590 AT1G01420.1 27.419 496 295 16 5 472 7 465 8.92e-46 166
Msa0371590 AT1G01420.2 27.419 496 295 16 5 472 10 468 1.12e-45 166
Msa0371590 AT1G10400.1 30.691 492 285 18 3 472 4 461 3.95e-45 164
Msa0371590 AT2G36790.1 29.800 500 298 17 6 475 13 489 7.71e-45 164
Msa0371590 AT2G36760.1 28.226 496 313 14 6 476 14 491 1.30e-44 163
Msa0371590 AT4G34135.1 27.397 511 292 13 3 472 8 480 1.40e-44 163
Msa0371590 AT2G18570.1 28.261 506 276 19 1 466 1 459 1.14e-42 157
Msa0371590 AT4G36770.1 26.875 480 289 13 6 458 4 448 1.21e-42 157
Msa0371590 AT3G53150.1 27.692 520 304 19 3 476 19 512 1.15e-41 155
Msa0371590 AT5G14860.1 27.525 505 292 19 6 473 8 475 2.44e-39 149
Msa0371590 AT2G29710.1 26.061 495 310 16 3 474 2 463 2.46e-39 148
Msa0371590 AT3G50740.1 26.419 511 297 17 4 475 5 475 2.51e-39 149
Msa0371590 AT4G34138.1 25.919 517 289 16 4 473 9 478 5.83e-39 147
Msa0371590 AT1G73880.1 26.543 486 312 14 4 474 12 467 2.52e-38 145
Msa0371590 AT5G03490.1 28.081 495 282 17 3 472 16 461 3.70e-38 145
Msa0371590 AT5G12890.1 26.190 504 306 18 6 474 10 482 1.86e-37 144
Msa0371590 AT3G16520.3 31.153 321 194 9 162 471 153 457 1.95e-37 143
Msa0371590 AT2G29730.1 25.673 483 321 16 6 474 5 463 6.29e-37 142
Msa0371590 AT1G51210.1 27.412 456 277 15 4 447 18 431 7.27e-37 141
Msa0371590 AT2G16890.2 27.108 498 294 19 6 473 9 467 9.64e-37 141
Msa0371590 AT2G18560.1 32.107 299 152 11 201 466 89 369 1.73e-35 136
Msa0371590 AT3G21760.1 25.800 500 320 14 4 473 2 480 2.32e-35 137
Msa0371590 AT3G21790.1 26.036 507 308 17 4 473 2 478 2.77e-35 137
Msa0371590 AT3G16520.2 31.126 302 181 9 162 452 153 438 3.74e-35 136
Msa0371590 AT3G16520.1 31.126 302 181 9 162 452 153 438 4.19e-35 136
Msa0371590 AT3G21750.1 24.554 505 314 13 4 476 2 471 1.13e-34 135
Msa0371590 AT5G65550.1 26.423 492 300 16 4 471 7 460 1.29e-33 132
Msa0371590 AT3G21780.1 26.121 513 300 20 4 478 2 473 7.63e-33 130
Msa0371590 AT2G29750.1 25.249 503 316 18 6 479 8 479 2.97e-32 129
Msa0371590 AT4G15260.1 30.303 297 162 8 209 478 81 359 4.04e-32 126
Msa0371590 AT2G29740.1 25.000 496 315 18 3 470 5 471 2.53e-31 126
Msa0371590 AT1G07260.1 24.266 511 311 16 1 474 1 472 1.23e-30 124
Msa0371590 AT5G49690.1 26.940 464 269 20 6 445 10 427 9.10e-30 121
Msa0371590 AT3G21800.1 32.384 281 152 9 223 478 213 480 1.28e-29 121
Msa0371590 AT1G07240.1 26.446 363 229 10 128 474 136 476 4.05e-29 120
Msa0371590 AT4G15280.1 24.510 510 313 15 4 476 2 476 6.59e-29 119
Msa0371590 AT1G07250.1 23.366 505 332 13 1 478 1 477 7.90e-29 119
Msa0371590 AT4G15280.2 24.510 510 313 15 4 476 34 508 9.79e-29 119
Msa0371590 AT2G16890.3 26.222 450 264 18 6 426 9 419 1.62e-28 117
Msa0371590 AT2G22590.1 26.383 470 286 19 4 449 13 446 2.97e-25 108
Msa0371590 AT5G54010.1 25.000 496 305 19 1 476 1 449 4.97e-25 107
Msa0371590 AT1G64910.1 25.231 432 265 13 1 424 1 382 1.56e-23 103
Msa0371590 AT1G06000.1 23.171 492 292 17 3 473 7 433 1.90e-23 102
Msa0371590 AT4G27570.1 23.593 462 296 16 4 450 5 424 3.73e-23 102
Msa0371590 AT5G53990.1 24.826 431 268 14 1 424 1 382 9.11e-23 100
Msa0371590 AT4G34135.2 26.479 355 195 10 3 327 8 326 6.44e-22 97.1
Msa0371590 AT4G27560.1 23.347 484 317 18 4 474 5 447 1.17e-21 97.8
Msa0371590 AT3G29630.1 23.721 430 280 12 1 426 1 386 1.32e-20 94.7
Msa0371590 AT3G29630.2 23.077 429 258 12 1 426 1 360 1.34e-18 88.2
Msa0371590 AT5G54060.1 22.814 469 296 16 7 449 14 442 1.68e-18 88.2
Msa0371590 AT1G64920.1 24.283 453 289 14 1 445 1 407 4.10e-18 87.0
Msa0371590 AT4G01070.2 25.134 374 215 11 3 350 5 339 5.60e-18 85.5
Msa0371590 AT1G50580.1 22.410 473 310 16 1 460 1 429 7.50e-18 86.3
Msa0371590 AT4G09500.2 26.486 185 129 3 283 460 244 428 1.53e-16 82.0
Msa0371590 AT4G09500.1 26.486 185 129 3 283 460 219 403 1.64e-16 82.0
Msa0371590 AT2G22930.1 24.022 179 129 3 279 450 240 418 4.85e-15 77.4

Find 109 sgRNAs with CRISPR-Local

Find 224 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGCAAATGGTTCAAGTTTA+TGG 0.081901 3_1:-69802429 Msa0371590:CDS
TGATATTATGTTTGATTTCT+TGG 0.169944 3_1:-69802620 Msa0371590:CDS
TTAAAACCATGTTCCTTCTT+AGG 0.170040 3_1:+69802451 None:intergenic
GCACAAAATGGTTGAATAAA+TGG 0.184599 3_1:-69802390 Msa0371590:CDS
AGCTATAGATGCTACTAATT+TGG 0.205470 3_1:-69801876 Msa0371590:CDS
GTTGCATCTTTATCTGATTC+TGG 0.253266 3_1:+69804986 None:intergenic
CATAATTGCTGATGGACTTT+CGG 0.255854 3_1:-69804855 Msa0371590:CDS
GATGAAAATTTCATTGTTGA+TGG 0.281443 3_1:-69802733 Msa0371590:CDS
ATAATTGCTGATGGACTTTC+GGG 0.284728 3_1:-69804854 Msa0371590:CDS
CATTGTGATGAAGAACCTTT+TGG 0.286892 3_1:+69801819 None:intergenic
GATGGACTTTCGGGCTTTGC+TGG 0.289676 3_1:-69804845 Msa0371590:CDS
CTAATACAACATGTGGCTTT+TGG 0.304454 3_1:+69805194 None:intergenic
ATGAAGCCCTTGCCGCTCTT+AGG 0.305846 3_1:-69802531 Msa0371590:CDS
GGACCAATGCTATATATGTT+TGG 0.319476 3_1:+69802499 None:intergenic
GCTATAGATGCTACTAATTT+GGG 0.327366 3_1:-69801875 Msa0371590:CDS
GACCAATGCTATATATGTTT+GGG 0.332388 3_1:+69802500 None:intergenic
GCATTAGTGTAGAGAGTTGT+TGG 0.337429 3_1:-69801671 Msa0371590:three_prime_UTR
TGCTTGCTCATCCATCAGTT+GGG 0.338073 3_1:-69802144 Msa0371590:CDS
ACAATTGAAACCATTTCTTC+AGG 0.342589 3_1:-69802091 Msa0371590:CDS
CAGGTGTTCCTACTATTTGT+TGG 0.345507 3_1:-69802072 Msa0371590:CDS
TGCTTCTGCTTGTGGCTTTG+TGG 0.346266 3_1:-69804777 Msa0371590:CDS
CTGAGCAACAAACAAATTGT+AGG 0.353752 3_1:-69802039 Msa0371590:CDS
ACCATTACAACGTAGGAGTT+TGG 0.354802 3_1:+69805126 None:intergenic
GCTTCTGCTTGTGGCTTTGT+GGG 0.356235 3_1:-69804776 Msa0371590:CDS
CCACTTGAAGGAATTTGCTT+GGG 0.364246 3_1:-69802311 Msa0371590:CDS
CAATGAAATCTTTATCGATT+CGG 0.364476 3_1:-69801598 Msa0371590:three_prime_UTR
TGGAAGAGTAGCAAGAGATT+TGG 0.364715 3_1:-69804825 Msa0371590:CDS
CCTTGGATACATGTTTAGAT+TGG 0.369819 3_1:-69802708 Msa0371590:CDS
TCAGTCCTATATGTTAATTA+TGG 0.370543 3_1:-69802358 Msa0371590:CDS
CGAATCGATAAAGATTTCAT+TGG 0.374987 3_1:+69801599 None:intergenic
TCAGCAATTATGCAAGTAAC+TGG 0.376290 3_1:+69804866 None:intergenic
GATATTATGTTTGATTTCTT+GGG 0.378244 3_1:-69802619 Msa0371590:CDS
TTATGCAACACTTGGAGAAT+AGG 0.381141 3_1:-69802013 Msa0371590:CDS
ATGGTCTCAAATTGAAAATC+AGG 0.386462 3_1:+69805022 None:intergenic
GGAAGAGTAGCAAGAGATTT+GGG 0.387282 3_1:-69804824 Msa0371590:CDS
GCATTCAAGAAATACAGTTT+TGG 0.388315 3_1:-69804802 Msa0371590:CDS
TTTATCGATTCGGTTTAGTT+TGG 0.389944 3_1:-69801588 Msa0371590:three_prime_UTR
TCTTCACCCATTACTACATC+TGG 0.391769 3_1:+69802247 None:intergenic
GTGACCTAGAATGCACAAAA+TGG 0.392379 3_1:-69802402 Msa0371590:CDS
AACCATAATTTACCTTTGAA+TGG 0.395322 3_1:+69804713 None:intergenic
CATTAGTGTAGAGAGTTGTT+GGG 0.402444 3_1:-69801670 Msa0371590:three_prime_UTR
GTTGTTGGGGTGTAATAGTT+CGG 0.413044 3_1:-69801656 Msa0371590:three_prime_UTR
ACATGTTTAGATTGGATCTC+TGG 0.419613 3_1:-69802700 Msa0371590:CDS
AGTAGGAACACCTGAAGAAA+TGG 0.419675 3_1:+69802081 None:intergenic
CAATTAACTATGATGTGAAA+AGG 0.423722 3_1:-69801985 Msa0371590:CDS
GGAAATGATGGAAGGAGAAA+AGG 0.424374 3_1:-69801939 Msa0371590:CDS
AAACATAATATCATTTAAAT+CGG 0.427339 3_1:+69802630 None:intergenic
TGAAGCCCTTGCCGCTCTTA+GGG 0.438198 3_1:-69802530 Msa0371590:CDS
ACCACTTGAAGGAATTTGCT+TGG 0.441871 3_1:-69802312 Msa0371590:CDS
GAAATGATGGAAGGAGAAAA+GGG 0.444552 3_1:-69801938 Msa0371590:CDS
TTTCCATAAGTTAATCCAAA+AGG 0.450715 3_1:-69801834 Msa0371590:CDS
CACTTCCATAATTAACATAT+AGG 0.451185 3_1:+69802353 None:intergenic
AAACGTTTGATAAAATCTCT+TGG 0.455060 3_1:-69805067 Msa0371590:CDS
TATGACAGATCACCACTTGA+AGG 0.456340 3_1:-69802323 Msa0371590:CDS
TCTGATTCTGGTAAACCGTC+AGG 0.460354 3_1:+69804998 None:intergenic
GCCAAACTCCTACGTTGTAA+TGG 0.460605 3_1:-69805127 Msa0371590:CDS
TGGTAGGAACTTTCCTAAGA+AGG 0.472098 3_1:-69802464 Msa0371590:CDS
GTTTGTTGCTCAGCAAAGAA+AGG 0.473094 3_1:+69802049 None:intergenic
CAGTGTTCACAAAGGTTATG+TGG 0.477175 3_1:+69805101 None:intergenic
GTGCTTGCTCATCCATCAGT+TGG 0.479121 3_1:-69802145 Msa0371590:CDS
CTAGACGAGGTTAAGGATAG+AGG 0.480369 3_1:-69802199 Msa0371590:CDS
AAGAAAGGCCAACAAATAGT+AGG 0.483470 3_1:+69802064 None:intergenic
ACATGACCTTGTGCTGGAAA+TGG 0.488947 3_1:+69805169 None:intergenic
CTGAGGCACAGAATTGTTTG+AGG 0.489551 3_1:-69802594 Msa0371590:CDS
TGATTATCATAGAACTCAAA+TGG 0.491997 3_1:+69801796 None:intergenic
GTTTGATTTCTTGGGTTCTG+AGG 0.496308 3_1:-69802611 Msa0371590:CDS
AGAGTTTCTAGACGAGGTTA+AGG 0.499062 3_1:-69802206 Msa0371590:CDS
GTTACTTGCATAATTGCTGA+TGG 0.499252 3_1:-69804863 Msa0371590:CDS
AATTAACTATGATGTGAAAA+GGG 0.505741 3_1:-69801984 Msa0371590:CDS
TCGGTGACTCTCATAAAACT+TGG 0.510649 3_1:+69802649 None:intergenic
CTGATGGATGAGCAAGCACT+TGG 0.515271 3_1:+69802149 None:intergenic
AGTTTGGCTAGTTGCATGAA+AGG 0.517620 3_1:+69805142 None:intergenic
ATTGGTCCACTTCACATGCT+TGG 0.521488 3_1:-69802484 Msa0371590:CDS
CCCAAGCAAATTCCTTCAAG+TGG 0.523214 3_1:+69802311 None:intergenic
AGAGGAATTCTTCCATTCAA+AGG 0.528099 3_1:-69804725 Msa0371590:intron
AACCCAAACATATATAGCAT+TGG 0.528923 3_1:-69802502 Msa0371590:CDS
GGGTTCACATGACCTTGTGC+TGG 0.530108 3_1:+69805163 None:intergenic
GCTTGCTCATCCATCAGTTG+GGG 0.531389 3_1:-69802143 Msa0371590:CDS
TTCTGGTAAACCGTCAGGTA+TGG 0.532910 3_1:+69805003 None:intergenic
TTTGGCCCTAAGAGCGGCAA+GGG 0.533339 3_1:+69802525 None:intergenic
CACTTGAAGGAATTTGCTTG+GGG 0.535238 3_1:-69802310 Msa0371590:CDS
TGAGACAAAAGAGTTTAGAG+TGG 0.544189 3_1:-69801907 Msa0371590:CDS
GTGAGACCAGATGTAGTAAT+GGG 0.546373 3_1:-69802253 Msa0371590:CDS
GTTTGGCTAGTTGCATGAAA+GGG 0.555128 3_1:+69805143 None:intergenic
TTTCATTGTTGATGGCACCT+TGG 0.556341 3_1:-69802725 Msa0371590:CDS
CCAATCTAAACATGTATCCA+AGG 0.560724 3_1:+69802708 None:intergenic
GTAGGTATTTATGCAACACT+TGG 0.572740 3_1:-69802021 Msa0371590:CDS
TTCTTACTTGCTTCACACAA+CGG 0.577665 3_1:+69804950 None:intergenic
AACTTTCCTAAGAAGGAACA+TGG 0.583852 3_1:-69802457 Msa0371590:CDS
TTCCTACCAAGCATGTGAAG+TGG 0.583854 3_1:+69802478 None:intergenic
CAACACTTGGAGAATAGGAA+TGG 0.592874 3_1:-69802008 Msa0371590:CDS
TGTGAGACCAGATGTAGTAA+TGG 0.596460 3_1:-69802254 Msa0371590:CDS
AATGGTACTAATACAACATG+TGG 0.596910 3_1:+69805187 None:intergenic
AGATAAAGATGCAACACAAG+AGG 0.600421 3_1:-69804978 Msa0371590:CDS
ATAGAGGATACATAACAAGT+TGG 0.603705 3_1:-69802183 Msa0371590:CDS
TGACTCTCATAAAACTTGGA+AGG 0.606477 3_1:+69802653 None:intergenic
GTCCACTTCACATGCTTGGT+AGG 0.606656 3_1:-69802480 Msa0371590:CDS
TTAACATATAGGACTGAGCA+AGG 0.608706 3_1:+69802364 None:intergenic
ATTAGTGTAGAGAGTTGTTG+GGG 0.622077 3_1:-69801669 Msa0371590:three_prime_UTR
GCCACAAGAGTTTCTAGACG+AGG 0.623546 3_1:-69802212 Msa0371590:CDS
CAATTTGAGACCATACCTGA+CGG 0.624710 3_1:-69805013 Msa0371590:CDS
TATGATGAGCTTGTTAAGAG+AGG 0.633165 3_1:-69804743 Msa0371590:CDS
AAATGATGGAAGGAGAAAAG+GGG 0.640498 3_1:-69801937 Msa0371590:CDS
TTAGTACCATTTCCAGCACA+AGG 0.640576 3_1:-69805175 Msa0371590:CDS
GTTGAATTCAGTGTTCACAA+AGG 0.652579 3_1:+69805093 None:intergenic
TTATGCAAGTAACTGGAACA+TGG 0.656892 3_1:+69804873 None:intergenic
ACCTCGTCTAGAAACTCTTG+TGG 0.667496 3_1:+69802211 None:intergenic
ATAGATGCTACTAATTTGGG+AGG 0.676642 3_1:-69801872 Msa0371590:CDS
TGTGGAAACCATTACAACGT+AGG 0.697450 3_1:+69805119 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATATTTTTAAATAATTA+TGG - chr3_1:69802615-69802634 Msa0371590:CDS 0.0%
!!! TAATATTTTTAAATAATTAT+GGG - chr3_1:69802616-69802635 Msa0371590:CDS 0.0%
!! AAAAATTTCATCTAATAATA+TGG - chr3_1:69802406-69802425 Msa0371590:CDS 10.0%
!!! CTTAATTTATTTTTTAAAAG+TGG + chr3_1:69802648-69802667 None:intergenic 10.0%
!!! AAAGTAATTTTTAAATTAGA+CGG + chr3_1:69802678-69802697 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG - chr3_1:69802855-69802874 Msa0371590:intron 10.0%
!! AAGAAAAATGTATAAATAAA+GGG - chr3_1:69802856-69802875 Msa0371590:intron 10.0%
!!! AAAAAAGTCATTTTTAAAAT+CGG - chr3_1:69803201-69803220 Msa0371590:intron 10.0%
!!! AACTTTTTTTTTTCTTAAAT+AGG - chr3_1:69803232-69803251 Msa0371590:intron 10.0%
!!! AAATTATATAGATTATTTTG+TGG - chr3_1:69803666-69803685 Msa0371590:intron 10.0%
!!! TATTGAATATCATTAATTTT+TGG - chr3_1:69803820-69803839 Msa0371590:intron 10.0%
!! AAACATAATATCATTTAAAT+CGG + chr3_1:69804193-69804212 None:intergenic 10.0%
!! AACATCTAAAAATGATTTAA+AGG - chr3_1:69802152-69802171 Msa0371590:CDS 15.0%
!!! ATTATTAGATGAAATTTTTG+CGG + chr3_1:69802405-69802424 None:intergenic 15.0%
!! TCAAAATTTCCTAAATTATT+GGG + chr3_1:69802460-69802479 None:intergenic 15.0%
!! TTCAAAATTTCCTAAATTAT+TGG + chr3_1:69802461-69802480 None:intergenic 15.0%
!!! TTTAGGAAATTTTGAATTTT+TGG - chr3_1:69802465-69802484 Msa0371590:CDS 15.0%
!!! CACTTTTTTTTTTTTAAGAT+AGG - chr3_1:69802542-69802561 Msa0371590:CDS 15.0%
!!! TTTTTTCTTCTTTTGAATTT+TGG - chr3_1:69802710-69802729 Msa0371590:CDS 15.0%
!! AGAAAAATGTATAAATAAAG+GGG - chr3_1:69802857-69802876 Msa0371590:intron 15.0%
!!! AAAAAGTCATTTTTAAAATC+GGG - chr3_1:69803202-69803221 Msa0371590:intron 15.0%
!!! TTTTTTTTTTCTTAAATAGG+AGG - chr3_1:69803235-69803254 Msa0371590:intron 15.0%
!!! TTGTTTCTTCAAAAAATAAA+AGG + chr3_1:69803279-69803298 None:intergenic 15.0%
!! AAAACCTGAAATTAAAATAT+TGG - chr3_1:69803351-69803370 Msa0371590:intron 15.0%
!! AAACCTGAAATTAAAATATT+GGG - chr3_1:69803352-69803371 Msa0371590:intron 15.0%
!!! AAGCAAAAAAATTACTTTTT+AGG - chr3_1:69803507-69803526 Msa0371590:intron 15.0%
!! CATTGAATAATTAATGTATT+TGG + chr3_1:69803571-69803590 None:intergenic 15.0%
!! AACATTATATCAATGTAATT+TGG - chr3_1:69803986-69804005 Msa0371590:intron 15.0%
!!! ATAGTAAATTACCATTTTTA+TGG - chr3_1:69804541-69804560 Msa0371590:intron 15.0%
!! CACAGAAAAACAAATTAAAA+TGG - chr3_1:69801602-69801621 Msa0371590:three_prime_UTR 20.0%
!! ATCTAAAAATGATTTAAAGG+TGG - chr3_1:69802155-69802174 Msa0371590:CDS 20.0%
!! TTCAATAAAAAAGTGAGTAT+TGG + chr3_1:69802327-69802346 None:intergenic 20.0%
!! TAATAATATGGATGATTGTT+TGG - chr3_1:69802418-69802437 Msa0371590:CDS 20.0%
!!! TTATTTTTTAAAAGTGGACT+TGG + chr3_1:69802642-69802661 None:intergenic 20.0%
!! AAAGTGGAATATATTGAATT+GGG - chr3_1:69802880-69802899 Msa0371590:intron 20.0%
!!! TTGAAATGACTCAATTATTT+TGG - chr3_1:69802967-69802986 Msa0371590:intron 20.0%
!!! TGAAATGACTCAATTATTTT+GGG - chr3_1:69802968-69802987 Msa0371590:intron 20.0%
!!! GACACTTTTTTTTAGTAAAT+AGG - chr3_1:69802990-69803009 Msa0371590:intron 20.0%
!!! TTACCCAATATTTTAATTTC+AGG + chr3_1:69803358-69803377 None:intergenic 20.0%
!! TATTATAGACCAAATACATT+AGG + chr3_1:69803544-69803563 None:intergenic 20.0%
!! TAAATTTCTTTGTAAATCGT+TGG - chr3_1:69803726-69803745 Msa0371590:intron 20.0%
!!! GGATATGTTTTTTTTTTTGA+AGG - chr3_1:69803747-69803766 Msa0371590:intron 20.0%
!! TGTTATTGAGTCAAAATTAA+AGG - chr3_1:69803785-69803804 Msa0371590:intron 20.0%
!!! TGAATATCATTAATTTTTGG+TGG - chr3_1:69803823-69803842 Msa0371590:intron 20.0%
!!! GAATATCATTAATTTTTGGT+GGG - chr3_1:69803824-69803843 Msa0371590:intron 20.0%
!!! ATTTTCATCTAAAAATGTCA+TGG + chr3_1:69804076-69804095 None:intergenic 20.0%
!!! TGATATTATGTTTGATTTCT+TGG - chr3_1:69804200-69804219 Msa0371590:intron 20.0%
!!! GATATTATGTTTGATTTCTT+GGG - chr3_1:69804201-69804220 Msa0371590:intron 20.0%
!! AATTAACTATGATGTGAAAA+GGG - chr3_1:69804836-69804855 Msa0371590:CDS 20.0%
! AAACGTTTGATAAAATCTCT+TGG - chr3_1:69801753-69801772 Msa0371590:three_prime_UTR 25.0%
! TTCCATTCAAAGGTAAATTA+TGG - chr3_1:69802105-69802124 Msa0371590:CDS 25.0%
! AACCATAATTTACCTTTGAA+TGG + chr3_1:69802110-69802129 None:intergenic 25.0%
!! TTTAAATCCTTTGTTTAGAG+AGG - chr3_1:69802280-69802299 Msa0371590:CDS 25.0%
!! TATTGAGTCTCAACATTTTA+TGG - chr3_1:69802354-69802373 Msa0371590:CDS 25.0%
!! ATTGAGTCTCAACATTTTAT+GGG - chr3_1:69802355-69802374 Msa0371590:CDS 25.0%
! GAAAGTGGAATATATTGAAT+TGG - chr3_1:69802879-69802898 Msa0371590:intron 25.0%
!! ATGAGACAATATTTTTCTAG+AGG + chr3_1:69803092-69803111 None:intergenic 25.0%
! AAATATTGTCTCATCACAAA+TGG - chr3_1:69803098-69803117 Msa0371590:intron 25.0%
! CAAGACAAAAAAGCTATAAT+CGG - chr3_1:69803172-69803191 Msa0371590:intron 25.0%
! ATACGAACTTATCTATTTAG+TGG + chr3_1:69803420-69803439 None:intergenic 25.0%
!!! TATTGACTTCTCTTGTTATA+TGG - chr3_1:69803460-69803479 Msa0371590:intron 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG + chr3_1:69803606-69803625 None:intergenic 25.0%
!! TTTTTGCTTATAAATGTGAC+CGG - chr3_1:69803606-69803625 Msa0371590:intron 25.0%
!!! TTTTTTGAAGGAAAAATCGT+TGG - chr3_1:69803759-69803778 Msa0371590:intron 25.0%
! GATGAAAATTTCATTGTTGA+TGG - chr3_1:69804087-69804106 Msa0371590:intron 25.0%
! TCAGTCCTATATGTTAATTA+TGG - chr3_1:69804462-69804481 Msa0371590:intron 25.0%
! CACTTCCATAATTAACATAT+AGG + chr3_1:69804470-69804489 None:intergenic 25.0%
! CAATTAACTATGATGTGAAA+AGG - chr3_1:69804835-69804854 Msa0371590:CDS 25.0%
! TTTCCATAAGTTAATCCAAA+AGG - chr3_1:69804986-69805005 Msa0371590:CDS 25.0%
! TGATTATCATAGAACTCAAA+TGG + chr3_1:69805027-69805046 None:intergenic 25.0%
!! CAATGAAATCTTTATCGATT+CGG - chr3_1:69805222-69805241 Msa0371590:five_prime_UTR 25.0%
!! ATTTGTTTTTCTGTGAGAGT+GGG + chr3_1:69801597-69801616 None:intergenic 30.0%
!! AATTTGTTTTTCTGTGAGAG+TGG + chr3_1:69801598-69801617 None:intergenic 30.0%
AATGGTACTAATACAACATG+TGG + chr3_1:69801636-69801655 None:intergenic 30.0%
! GAGATTTTATCAAACGTTTG+TGG + chr3_1:69801752-69801771 None:intergenic 30.0%
ATGGTCTCAAATTGAAAATC+AGG + chr3_1:69801801-69801820 None:intergenic 30.0%
! TTTTTCACAAGCTCTTTCAA+AGG + chr3_1:69801909-69801928 None:intergenic 30.0%
! GCATTCAAGAAATACAGTTT+TGG - chr3_1:69802018-69802037 Msa0371590:CDS 30.0%
TAATATGGATGATTGTTTGG+TGG - chr3_1:69802421-69802440 Msa0371590:CDS 30.0%
TCGTATCATTTATAGTTACG+TGG - chr3_1:69802741-69802760 Msa0371590:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG - chr3_1:69802864-69802883 Msa0371590:intron 30.0%
AGTAAATAGGTCAGATATTC+CGG - chr3_1:69803003-69803022 Msa0371590:intron 30.0%
!!! GTGGTCTATCATCTTATTTT+TGG + chr3_1:69803148-69803167 None:intergenic 30.0%
!!! AGCTTTTTTGTCTTGAATTG+TGG + chr3_1:69803167-69803186 None:intergenic 30.0%
CATTCAACACCTAATGTATT+TGG - chr3_1:69803532-69803551 Msa0371590:intron 30.0%
TTTACATAGACTTAATCCCA+CGG + chr3_1:69803710-69803729 None:intergenic 30.0%
!! GCTATATATGTTTGGGTTTT+TGG + chr3_1:69804316-69804335 None:intergenic 30.0%
AACCCAAACATATATAGCAT+TGG - chr3_1:69804318-69804337 Msa0371590:intron 30.0%
GACCAATGCTATATATGTTT+GGG + chr3_1:69804323-69804342 None:intergenic 30.0%
TTAAAACCATGTTCCTTCTT+AGG + chr3_1:69804372-69804391 None:intergenic 30.0%
!! TAAGAAGGAACATGGTTTTA+AGG - chr3_1:69804371-69804390 Msa0371590:intron 30.0%
GCACAAAATGGTTGAATAAA+TGG - chr3_1:69804430-69804449 Msa0371590:intron 30.0%
ATAGAGGATACATAACAAGT+TGG - chr3_1:69804637-69804656 Msa0371590:intron 30.0%
ACAATTGAAACCATTTCTTC+AGG - chr3_1:69804729-69804748 Msa0371590:CDS 30.0%
! AGAGATAACAGAACTTTTGA+TGG - chr3_1:69804860-69804879 Msa0371590:CDS 30.0%
! AGAACTTTTGATGGAAATGA+TGG - chr3_1:69804869-69804888 Msa0371590:CDS 30.0%
AGCTATAGATGCTACTAATT+TGG - chr3_1:69804944-69804963 Msa0371590:CDS 30.0%
GCTATAGATGCTACTAATTT+GGG - chr3_1:69804945-69804964 Msa0371590:CDS 30.0%
! GAACCTTTTGGATTAACTTA+TGG + chr3_1:69804992-69805011 None:intergenic 30.0%
CGAATCGATAAAGATTTCAT+TGG + chr3_1:69805224-69805243 None:intergenic 30.0%
!! TTTATCGATTCGGTTTAGTT+TGG - chr3_1:69805232-69805251 Msa0371590:five_prime_UTR 30.0%
! CTAATACAACATGTGGCTTT+TGG + chr3_1:69801629-69801648 None:intergenic 35.0%
GTTGAATTCAGTGTTCACAA+AGG + chr3_1:69801730-69801749 None:intergenic 35.0%
GTTGCATCTTTATCTGATTC+TGG + chr3_1:69801837-69801856 None:intergenic 35.0%
AGATAAAGATGCAACACAAG+AGG - chr3_1:69801842-69801861 Msa0371590:CDS 35.0%
TTCTTACTTGCTTCACACAA+CGG + chr3_1:69801873-69801892 None:intergenic 35.0%
TTATGCAAGTAACTGGAACA+TGG + chr3_1:69801950-69801969 None:intergenic 35.0%
TCAGCAATTATGCAAGTAAC+TGG + chr3_1:69801957-69801976 None:intergenic 35.0%
GTTACTTGCATAATTGCTGA+TGG - chr3_1:69801957-69801976 Msa0371590:CDS 35.0%
!! CATAATTGCTGATGGACTTT+CGG - chr3_1:69801965-69801984 Msa0371590:CDS 35.0%
!! ATAATTGCTGATGGACTTTC+GGG - chr3_1:69801966-69801985 Msa0371590:CDS 35.0%
!! TATGATGAGCTTGTTAAGAG+AGG - chr3_1:69802077-69802096 Msa0371590:CDS 35.0%
AGAGGAATTCTTCCATTCAA+AGG - chr3_1:69802095-69802114 Msa0371590:CDS 35.0%
AGCAGATGACCCAATAATTT+AGG - chr3_1:69802448-69802467 Msa0371590:CDS 35.0%
ATCTGTGTGAAAAACCAAAC+TGG + chr3_1:69802835-69802854 None:intergenic 35.0%
GACAAAAAAGCTATAATCGG+TGG - chr3_1:69803175-69803194 Msa0371590:intron 35.0%
TTACATAGACTTAATCCCAC+GGG + chr3_1:69803709-69803728 None:intergenic 35.0%
CCAATCTAAACATGTATCCA+AGG + chr3_1:69804115-69804134 None:intergenic 35.0%
CCTTGGATACATGTTTAGAT+TGG - chr3_1:69804112-69804131 Msa0371590:intron 35.0%
ACATGTTTAGATTGGATCTC+TGG - chr3_1:69804120-69804139 Msa0371590:intron 35.0%
TGACTCTCATAAAACTTGGA+AGG + chr3_1:69804170-69804189 None:intergenic 35.0%
GGACCAATGCTATATATGTT+TGG + chr3_1:69804324-69804343 None:intergenic 35.0%
AACTTTCCTAAGAAGGAACA+TGG - chr3_1:69804363-69804382 Msa0371590:intron 35.0%
!!! GAACATGGTTTTAAGGCAAA+TGG - chr3_1:69804378-69804397 Msa0371590:intron 35.0%
! AGGCAAATGGTTCAAGTTTA+TGG - chr3_1:69804391-69804410 Msa0371590:intron 35.0%
! TCAACCATTTTGTGCATTCT+AGG + chr3_1:69804425-69804444 None:intergenic 35.0%
TTAACATATAGGACTGAGCA+AGG + chr3_1:69804459-69804478 None:intergenic 35.0%
GGTCTCACAATCCATAAAAA+TGG + chr3_1:69804555-69804574 None:intergenic 35.0%
! TTTTTCTAACTCATTGCGGT+TGG - chr3_1:69804700-69804719 Msa0371590:intron 35.0%
AAGAAAGGCCAACAAATAGT+AGG + chr3_1:69804759-69804778 None:intergenic 35.0%
CTGAGCAACAAACAAATTGT+AGG - chr3_1:69804781-69804800 Msa0371590:CDS 35.0%
GTAGGTATTTATGCAACACT+TGG - chr3_1:69804799-69804818 Msa0371590:CDS 35.0%
TTATGCAACACTTGGAGAAT+AGG - chr3_1:69804807-69804826 Msa0371590:CDS 35.0%
!! CTTTTGATGGAAATGATGGA+AGG - chr3_1:69804873-69804892 Msa0371590:CDS 35.0%
! GAAATGATGGAAGGAGAAAA+GGG - chr3_1:69804882-69804901 Msa0371590:CDS 35.0%
! AAATGATGGAAGGAGAAAAG+GGG - chr3_1:69804883-69804902 Msa0371590:CDS 35.0%
TGAGACAAAAGAGTTTAGAG+TGG - chr3_1:69804913-69804932 Msa0371590:CDS 35.0%
ATAGATGCTACTAATTTGGG+AGG - chr3_1:69804948-69804967 Msa0371590:CDS 35.0%
! CATTGTGATGAAGAACCTTT+TGG + chr3_1:69805004-69805023 None:intergenic 35.0%
CATTAGTGTAGAGAGTTGTT+GGG - chr3_1:69805150-69805169 Msa0371590:CDS 35.0%
ATTAGTGTAGAGAGTTGTTG+GGG - chr3_1:69805151-69805170 Msa0371590:CDS 35.0%
!! TGTAATAGTTCGGTTTTGAC+TGG - chr3_1:69805174-69805193 Msa0371590:CDS 35.0%
TTAGTACCATTTCCAGCACA+AGG - chr3_1:69801645-69801664 Msa0371590:three_prime_UTR 40.0%
! GTTTGGCTAGTTGCATGAAA+GGG + chr3_1:69801680-69801699 None:intergenic 40.0%
! AGTTTGGCTAGTTGCATGAA+AGG + chr3_1:69801681-69801700 None:intergenic 40.0%
ACCATTACAACGTAGGAGTT+TGG + chr3_1:69801697-69801716 None:intergenic 40.0%
TGTGGAAACCATTACAACGT+AGG + chr3_1:69801704-69801723 None:intergenic 40.0%
CAGTGTTCACAAAGGTTATG+TGG + chr3_1:69801722-69801741 None:intergenic 40.0%
!! TCTTGGAGCTGATTTTGTGA+AGG - chr3_1:69801770-69801789 Msa0371590:three_prime_UTR 40.0%
!! CTTGGAGCTGATTTTGTGAA+GGG - chr3_1:69801771-69801790 Msa0371590:three_prime_UTR 40.0%
! CAATTTGAGACCATACCTGA+CGG - chr3_1:69801807-69801826 Msa0371590:exon 40.0%
TGGAAGAGTAGCAAGAGATT+TGG - chr3_1:69801995-69802014 Msa0371590:CDS 40.0%
GGAAGAGTAGCAAGAGATTT+GGG - chr3_1:69801996-69802015 Msa0371590:CDS 40.0%
AAGCACTCCTCTCTAAACAA+AGG + chr3_1:69802290-69802309 None:intergenic 40.0%
ATAGGTCAGATATTCCGGAA+CGG - chr3_1:69803008-69803027 Msa0371590:intron 40.0%
GTTATATGGTTTACTCCCTC+CGG - chr3_1:69803474-69803493 Msa0371590:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG + chr3_1:69803610-69803629 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG + chr3_1:69803609-69803628 None:intergenic 40.0%
TTGCTTATAAATGTGACCGG+AGG - chr3_1:69803609-69803628 Msa0371590:intron 40.0%
TGCTTATAAATGTGACCGGA+GGG - chr3_1:69803610-69803629 Msa0371590:intron 40.0%
AGTCTATGATATACTCCCTC+CGG + chr3_1:69803628-69803647 None:intergenic 40.0%
!! TTTCATTGTTGATGGCACCT+TGG - chr3_1:69804095-69804114 Msa0371590:intron 40.0%
TCGGTGACTCTCATAAAACT+TGG + chr3_1:69804174-69804193 None:intergenic 40.0%
! GTTTGATTTCTTGGGTTCTG+AGG - chr3_1:69804209-69804228 Msa0371590:intron 40.0%
TGGTAGGAACTTTCCTAAGA+AGG - chr3_1:69804356-69804375 Msa0371590:intron 40.0%
GTGACCTAGAATGCACAAAA+TGG - chr3_1:69804418-69804437 Msa0371590:intron 40.0%
TATGACAGATCACCACTTGA+AGG - chr3_1:69804497-69804516 Msa0371590:intron 40.0%
! ACCACTTGAAGGAATTTGCT+TGG - chr3_1:69804508-69804527 Msa0371590:intron 40.0%
! CCACTTGAAGGAATTTGCTT+GGG - chr3_1:69804509-69804528 Msa0371590:intron 40.0%
! CACTTGAAGGAATTTGCTTG+GGG - chr3_1:69804510-69804529 Msa0371590:intron 40.0%
TGTGAGACCAGATGTAGTAA+TGG - chr3_1:69804566-69804585 Msa0371590:intron 40.0%
GTGAGACCAGATGTAGTAAT+GGG - chr3_1:69804567-69804586 Msa0371590:intron 40.0%
TCTTCACCCATTACTACATC+TGG + chr3_1:69804576-69804595 None:intergenic 40.0%
! AGAGTTTCTAGACGAGGTTA+AGG - chr3_1:69804614-69804633 Msa0371590:intron 40.0%
GTTAGAAAAACCCCAACTGA+TGG + chr3_1:69804690-69804709 None:intergenic 40.0%
! GGGGTTTTTCTAACTCATTG+CGG - chr3_1:69804696-69804715 Msa0371590:intron 40.0%
AGTAGGAACACCTGAAGAAA+TGG + chr3_1:69804742-69804761 None:intergenic 40.0%
CAGGTGTTCCTACTATTTGT+TGG - chr3_1:69804748-69804767 Msa0371590:CDS 40.0%
! GTTTGTTGCTCAGCAAAGAA+AGG + chr3_1:69804774-69804793 None:intergenic 40.0%
CAACACTTGGAGAATAGGAA+TGG - chr3_1:69804812-69804831 Msa0371590:CDS 40.0%
! GGAAATGATGGAAGGAGAAA+AGG - chr3_1:69804881-69804900 Msa0371590:CDS 40.0%
GCATTAGTGTAGAGAGTTGT+TGG - chr3_1:69805149-69805168 Msa0371590:CDS 40.0%
GTTGTTGGGGTGTAATAGTT+CGG - chr3_1:69805164-69805183 Msa0371590:CDS 40.0%
ACATGACCTTGTGCTGGAAA+TGG + chr3_1:69801654-69801673 None:intergenic 45.0%
GCCAAACTCCTACGTTGTAA+TGG - chr3_1:69801693-69801712 Msa0371590:three_prime_UTR 45.0%
TTCTGGTAAACCGTCAGGTA+TGG + chr3_1:69801820-69801839 None:intergenic 45.0%
TCTGATTCTGGTAAACCGTC+AGG + chr3_1:69801825-69801844 None:intergenic 45.0%
! TTTTGGACTGCTTCTGCTTG+TGG - chr3_1:69802035-69802054 Msa0371590:CDS 45.0%
AAAATATACTCCCTCCGTCC+CGG - chr3_1:69802799-69802818 Msa0371590:intron 45.0%
! CAAACTGGCTCAGATATTCC+GGG + chr3_1:69802820-69802839 None:intergenic 45.0%
! CCAAACTGGCTCAGATATTC+CGG + chr3_1:69802821-69802840 None:intergenic 45.0%
ATCAAGTACTCCTTCCGTTC+CGG + chr3_1:69803025-69803044 None:intergenic 45.0%
AAATGTTAACGAGTGTCCCG+TGG - chr3_1:69803690-69803709 Msa0371590:intron 45.0%
AATGTTAACGAGTGTCCCGT+GGG - chr3_1:69803691-69803710 Msa0371590:intron 45.0%
CTGAGGCACAGAATTGTTTG+AGG - chr3_1:69804226-69804245 Msa0371590:intron 45.0%
ATTGGTCCACTTCACATGCT+TGG - chr3_1:69804336-69804355 Msa0371590:intron 45.0%
TTCCTACCAAGCATGTGAAG+TGG + chr3_1:69804345-69804364 None:intergenic 45.0%
CCCAAGCAAATTCCTTCAAG+TGG + chr3_1:69804512-69804531 None:intergenic 45.0%
ACCTCGTCTAGAAACTCTTG+TGG + chr3_1:69804612-69804631 None:intergenic 45.0%
CTAGACGAGGTTAAGGATAG+AGG - chr3_1:69804621-69804640 Msa0371590:intron 45.0%
TGCTTGCTCATCCATCAGTT+GGG - chr3_1:69804676-69804695 Msa0371590:intron 45.0%
!!! TATAATATTTTGAAATAATT+AGG - chr3_1:69802509-69802528 Msa0371590:CDS 5.0%
!!! TTAAAAAATAAATTAAGTTT+TGG - chr3_1:69802651-69802670 Msa0371590:CDS 5.0%
!! TTGAAAATATAAAATATAAA+AGG + chr3_1:69803307-69803326 None:intergenic 5.0%
!! AAAATAATCTATATAATTTA+TGG + chr3_1:69803665-69803684 None:intergenic 5.0%
! TGCTTCTGCTTGTGGCTTTG+TGG - chr3_1:69802043-69802062 Msa0371590:CDS 50.0%
!! GCTTCTGCTTGTGGCTTTGT+GGG - chr3_1:69802044-69802063 Msa0371590:CDS 50.0%
CCGGAATATCTGAGCCAGTT+TGG - chr3_1:69802818-69802837 Msa0371590:intron 50.0%
GTCAGATATTCCGGAACGGA+AGG - chr3_1:69803012-69803031 Msa0371590:intron 50.0%
!!! TGGGTTTTTGGCCCTAAGAG+CGG + chr3_1:69804304-69804323 None:intergenic 50.0%
GTCCACTTCACATGCTTGGT+AGG - chr3_1:69804340-69804359 Msa0371590:intron 50.0%
! GCCACAAGAGTTTCTAGACG+AGG - chr3_1:69804608-69804627 Msa0371590:intron 50.0%
! CTGATGGATGAGCAAGCACT+TGG + chr3_1:69804674-69804693 None:intergenic 50.0%
GTGCTTGCTCATCCATCAGT+TGG - chr3_1:69804675-69804694 Msa0371590:intron 50.0%
GCTTGCTCATCCATCAGTTG+GGG - chr3_1:69804677-69804696 Msa0371590:intron 50.0%
GGGTTCACATGACCTTGTGC+TGG + chr3_1:69801660-69801679 None:intergenic 55.0%
! GATGGACTTTCGGGCTTTGC+TGG - chr3_1:69801975-69801994 Msa0371590:CDS 55.0%
CTCAGATATTCCGGGACGGA+GGG + chr3_1:69802812-69802831 None:intergenic 55.0%
CTGGCTCAGATATTCCGGGA+CGG + chr3_1:69802816-69802835 None:intergenic 55.0%
ATGAAGCCCTTGCCGCTCTT+AGG - chr3_1:69804289-69804308 Msa0371590:intron 55.0%
TGAAGCCCTTGCCGCTCTTA+GGG - chr3_1:69804290-69804309 Msa0371590:intron 55.0%
TTTGGCCCTAAGAGCGGCAA+GGG + chr3_1:69804298-69804317 None:intergenic 55.0%
! TTTTGGCCCTAAGAGCGGCA+AGG + chr3_1:69804299-69804318 None:intergenic 55.0%
GCTCAGATATTCCGGGACGG+AGG + chr3_1:69802813-69802832 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 69801575 69805267 69801575 ID=Msa0371590;Name=Msa0371590
chr3_1 mRNA 69801575 69805267 69801575 ID=Msa0371590-mRNA-1;Parent=Msa0371590;Name=Msa0371590-mRNA-1;_AED=0.37;_eAED=0.37;_QI=46|1|1|1|1|1|2|236|479
chr3_1 exon 69801575 69802754 69801575 ID=Msa0371590-mRNA-1:exon:14999;Parent=Msa0371590-mRNA-1
chr3_1 exon 69804726 69805267 69804726 ID=Msa0371590-mRNA-1:exon:14998;Parent=Msa0371590-mRNA-1
chr3_1 five_prime_UTR 69805222 69805267 69805222 ID=Msa0371590-mRNA-1:five_prime_utr;Parent=Msa0371590-mRNA-1
chr3_1 CDS 69804726 69805221 69804726 ID=Msa0371590-mRNA-1:cds;Parent=Msa0371590-mRNA-1
chr3_1 CDS 69801811 69802754 69801811 ID=Msa0371590-mRNA-1:cds;Parent=Msa0371590-mRNA-1
chr3_1 three_prime_UTR 69801575 69801810 69801575 ID=Msa0371590-mRNA-1:three_prime_utr;Parent=Msa0371590-mRNA-1
Gene Sequence

>Msa0371590

ATGGACCAAAAGCCACATGTTGTATTAGTACCATTTCCAGCACAAGGTCATGTGAACCCTTTCATGCAACTAGCCAAACTCCTACGTTGTAATGGTTTCCACATAACCTTTGTGAACACTGAATTCAACCACAAACGTTTGATAAAATCTCTTGGAGCTGATTTTGTGAAGGGTCTACCTGATTTTCAATTTGAGACCATACCTGACGGTTTACCAGAATCAGATAAAGATGCAACACAAGAGGTTATACCGTTGTGTGAAGCAAGTAAGAAAAACTTCTATGCTCCTTTGAAAGAGCTTGTGAAAAAGTTGAACTCTTCATCACACCATGTTCCAGTTACTTGCATAATTGCTGATGGACTTTCGGGCTTTGCTGGAAGAGTAGCAAGAGATTTGGGCATTCAAGAAATACAGTTTTGGACTGCTTCTGCTTGTGGCTTTGTGGGATATTTGCAATATGATGAGCTTGTTAAGAGAGGAATTCTTCCATTCAAAGATGAAAATTTCATTGTTGATGGCACCTTGGATACATGTTTAGATTGGATCTCTGGTATAAAAGATATCAGACTAAAAGACCTTCCAAGTTTTATGAGAGTCACCGATTTAAATGATATTATGTTTGATTTCTTGGGTTCTGAGGCACAGAATTGTTTGAGGTCATCAACAATTATAATCAACACATTTGAAGAATTAGAACATGAAGCCCTTGCCGCTCTTAGGGCCAAAAACCCAAACATATATAGCATTGGTCCACTTCACATGCTTGGTAGGAACTTTCCTAAGAAGGAACATGGTTTTAAGGCAAATGGTTCAAGTTTATGGAAAAGTGACCTAGAATGCACAAAATGGTTGAATAAATGGAAACCTTGCTCAGTCCTATATGTTAATTATGGAAGTGTAACTATTATGACAGATCACCACTTGAAGGAATTTGCTTGGGGAATAGCAAATAGTAAATTACCATTTTTATGGATTGTGAGACCAGATGTAGTAATGGGTGAAGAAATTTCAACTTTGCCACAAGAGTTTCTAGACGAGGTTAAGGATAGAGGATACATAACAAGTTGGTGCATGCAAGACCAAGTGCTTGCTCATCCATCAGTTGGGGTTTTTCTAACTCATTGCGGTTGGAATTCTACAATTGAAACCATTTCTTCAGGTGTTCCTACTATTTGTTGGCCTTTCTTTGCTGAGCAACAAACAAATTGTAGGTATTTATGCAACACTTGGAGAATAGGAATGGCAATTAACTATGATGTGAAAAGGGAAGAGATAACAGAACTTTTGATGGAAATGATGGAAGGAGAAAAGGGGAAAAAAATGAGACAAAAGAGTTTAGAGTGGAAGAAGAAAGCTATAGATGCTACTAATTTGGGAGGATCATCATACAATAATTTCCATAAGTTAATCCAAAAGGTTCTTCATCACAATGCCATTTGA
Protein sequence

>Msa0371590

MDQKPHVVLVPFPAQGHVNPFMQLAKLLRCNGFHITFVNTEFNHKRLIKSLGADFVKGLPDFQFETIPDGLPESDKDATQEVIPLCEASKKNFYAPLKELVKKLNSSSHHVPVTCIIADGLSGFAGRVARDLGIQEIQFWTASACGFVGYLQYDELVKRGILPFKDENFIVDGTLDTCLDWISGIKDIRLKDLPSFMRVTDLNDIMFDFLGSEAQNCLRSSTIIINTFEELEHEALAALRAKNPNIYSIGPLHMLGRNFPKKEHGFKANGSSLWKSDLECTKWLNKWKPCSVLYVNYGSVTIMTDHHLKEFAWGIANSKLPFLWIVRPDVVMGEEISTLPQEFLDEVKDRGYITSWCMQDQVLAHPSVGVFLTHCGWNSTIETISSGVPTICWPFFAEQQTNCRYLCNTWRIGMAINYDVKREEITELLMEMMEGEKGKKMRQKSLEWKKKAIDATNLGGSSYNNFHKLIQKVLHHNAI*