Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590370 | XP_027192788.1 | 49.112 | 169 | 69 | 3 | 3 | 166 | 1 | 157 | 1.65e-38 | 160 |
| Msa0590370 | XP_027192788.1 | 60.129 | 311 | 104 | 4 | 137 | 436 | 405 | 706 | 4.55e-114 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0371980 | Msa0590370 | 0.804176 | 2.449715e-49 | -8.615850e-47 |
| Msa0543980 | Msa0590370 | -0.830107 | 3.536948e-55 | -8.615850e-47 |
| Msa0590370 | Msa0677770 | 0.852181 | 5.464151e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590370 | MtrunA17_Chr8g0345501 | 59.283 | 307 | 102 | 3 | 137 | 433 | 420 | 713 | 1.93e-113 | 351 |
| Msa0590370 | MtrunA17_Chr8g0345501 | 51.111 | 135 | 54 | 1 | 3 | 137 | 1 | 123 | 2.49e-37 | 145 |
| Msa0590370 | MtrunA17_Chr2g0313001 | 78.378 | 74 | 10 | 2 | 391 | 458 | 53 | 126 | 1.21e-28 | 110 |
| Msa0590370 | MtrunA17_Chr3g0086081 | 27.376 | 263 | 180 | 4 | 147 | 401 | 10 | 269 | 3.73e-25 | 106 |
| Msa0590370 | MtrunA17_Chr8g0345511 | 59.459 | 74 | 26 | 1 | 318 | 391 | 37 | 106 | 7.06e-22 | 90.9 |
| Msa0590370 | MtrunA17_Chr2g0314741 | 36.719 | 128 | 79 | 2 | 3 | 129 | 1 | 127 | 1.64e-19 | 89.7 |
| Msa0590370 | MtrunA17_Chr4g0039731 | 26.389 | 216 | 149 | 3 | 147 | 353 | 187 | 401 | 2.99e-19 | 91.3 |
| Msa0590370 | MtrunA17_Chr4g0039731 | 48.148 | 81 | 42 | 0 | 9 | 89 | 3 | 83 | 5.43e-19 | 90.5 |
| Msa0590370 | MtrunA17_Chr4g0010341 | 26.087 | 253 | 169 | 6 | 162 | 406 | 218 | 460 | 3.22e-17 | 84.0 |
| Msa0590370 | MtrunA17_Chr2g0322881 | 30.556 | 252 | 150 | 10 | 171 | 407 | 382 | 623 | 4.36e-17 | 84.3 |
| Msa0590370 | MtrunA17_Chr1g0176161 | 23.958 | 288 | 186 | 8 | 162 | 416 | 194 | 481 | 5.79e-17 | 83.6 |
| Msa0590370 | MtrunA17_Chr1g0176171 | 32.540 | 126 | 82 | 2 | 8 | 133 | 7 | 129 | 6.22e-17 | 79.7 |
| Msa0590370 | MtrunA17_Chr7g0231401 | 28.077 | 260 | 146 | 10 | 171 | 414 | 325 | 559 | 2.90e-16 | 81.6 |
| Msa0590370 | MtrunA17_Chr4g0025081 | 26.636 | 214 | 136 | 6 | 162 | 354 | 267 | 480 | 1.30e-15 | 79.3 |
| Msa0590370 | MtrunA17_Chr2g0310491 | 31.280 | 211 | 130 | 8 | 207 | 407 | 1 | 206 | 4.61e-13 | 68.9 |
| Msa0590370 | MtrunA17_Chr1g0179631 | 29.319 | 191 | 106 | 6 | 106 | 275 | 481 | 663 | 5.35e-13 | 71.6 |
| Msa0590370 | MtrunA17_Chr5g0414621 | 25.571 | 219 | 139 | 6 | 143 | 342 | 780 | 993 | 1.26e-11 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCAACTGATTTGGATATA+TGG | 0.220847 | 4_2:+13846017 | Msa0590370:CDS |
| TCGTTTACATTGGAATAAAA+TGG | 0.272094 | 4_2:+13845534 | Msa0590370:CDS |
| CATCTTCGCCGTCATTGATA+TGG | 0.283801 | 4_2:-13843362 | None:intergenic |
| AAGGATTTACACCCGGATAT+TGG | 0.306017 | 4_2:+13843310 | Msa0590370:CDS |
| GTATGAAATGCCAACTGATT+TGG | 0.307692 | 4_2:+13846009 | Msa0590370:CDS |
| TTACACCCGGATATTGGATT+TGG | 0.312326 | 4_2:+13843316 | Msa0590370:CDS |
| TGTTGCCATTATGAAACATT+TGG | 0.317936 | 4_2:+13846279 | Msa0590370:CDS |
| AAGAAATTGCTCACATTATA+CGG | 0.326347 | 4_2:+13845072 | Msa0590370:CDS |
| CTTCCGTACACATCGCAAAA+AGG | 0.331253 | 4_2:+13845672 | Msa0590370:CDS |
| TGATTTCTTTGACTCATTCA+TGG | 0.333269 | 4_2:+13845151 | Msa0590370:CDS |
| TAAAAGAAATCGCAATTCTA+TGG | 0.339144 | 4_2:+13845474 | Msa0590370:CDS |
| ATGTGACTGTTTGCTTCATC+TGG | 0.339655 | 4_2:-13843279 | None:intergenic |
| GACATGGTCTTTAATGCTGC+TGG | 0.345459 | 4_2:+13843456 | Msa0590370:CDS |
| ATCGGACATGGATGTATAAT+AGG | 0.350723 | 4_2:+13843109 | Msa0590370:CDS |
| GTAAGGAGTGTGTTGATCTT+TGG | 0.351346 | 4_2:+13846866 | Msa0590370:CDS |
| ATGAAACATTTGGGATTTGT+TGG | 0.353696 | 4_2:+13846289 | Msa0590370:CDS |
| CCGTCATGGAAGCAATTATC+AGG | 0.356730 | 4_2:+13845116 | Msa0590370:CDS |
| GTTGCCATTATGAAACATTT+GGG | 0.374658 | 4_2:+13846280 | Msa0590370:CDS |
| GGAATGACTTGAAGCAATAT+TGG | 0.376576 | 4_2:+13845416 | Msa0590370:CDS |
| CGGCGAAGATGCTATAGATA+TGG | 0.393320 | 4_2:+13843374 | Msa0590370:CDS |
| GCATGTCCAAATCCAATATC+CGG | 0.406626 | 4_2:-13843322 | None:intergenic |
| TGTATTAAAACTGCCACAAA+AGG | 0.406776 | 4_2:-13846964 | None:intergenic |
| CACTGTTGGGGTTTGAAACA+TGG | 0.416763 | 4_2:-13846321 | None:intergenic |
| GCCAACTGATTTGGATATAT+GGG | 0.422049 | 4_2:+13846018 | Msa0590370:CDS |
| AAATCCCAAATGTTTCATAA+TGG | 0.426801 | 4_2:-13846284 | None:intergenic |
| GTTGGATGGGAGACGACGTT+TGG | 0.440500 | 4_2:+13845395 | Msa0590370:CDS |
| TCAACACACTCCTTACCAAT+TGG | 0.449997 | 4_2:-13846859 | None:intergenic |
| TTGATTTGAAGATGGAATCA+AGG | 0.453518 | 4_2:-13846098 | None:intergenic |
| TCTACTCAGAATACCACATT+TGG | 0.453989 | 4_2:+13845953 | Msa0590370:intron |
| GCTGGTGCATCTCTTCAAAC+TGG | 0.456730 | 4_2:+13845496 | Msa0590370:CDS |
| AGGCTTCATCCTGGACGAAA+AGG | 0.458558 | 4_2:+13843129 | Msa0590370:CDS |
| CTCAGTTGATGCAAGAAGTT+CGG | 0.458850 | 4_2:+13845350 | Msa0590370:CDS |
| AAAGGGAGGATATTTGGTCT+TGG | 0.464262 | 4_2:+13846061 | Msa0590370:CDS |
| CAATTCCCCATCGTTTACAT+TGG | 0.470029 | 4_2:+13845524 | Msa0590370:CDS |
| TTTGTTTGTTGATTTGAAGA+TGG | 0.485071 | 4_2:-13846106 | None:intergenic |
| TACATGGCAACCAGAGCATA+AGG | 0.485592 | 4_2:+13845282 | Msa0590370:CDS |
| TTTATTCCAATGTAAACGAT+GGG | 0.487087 | 4_2:-13845530 | None:intergenic |
| AACAAGAGAAGTTGCAGATG+AGG | 0.489038 | 4_2:+13846206 | Msa0590370:CDS |
| ATCTTCGCCGTCATTGATAT+GGG | 0.492502 | 4_2:-13843361 | None:intergenic |
| TTGGCAGCACTTGCAATCCT+AGG | 0.493302 | 4_2:-13846889 | None:intergenic |
| TCTGCTATCACAGGTCCAAT+TGG | 0.496330 | 4_2:+13846844 | Msa0590370:CDS |
| GATATATGGGTAGATTCTGT+TGG | 0.506068 | 4_2:+13846031 | Msa0590370:CDS |
| GGAGGATAAACCAAGTTGGA+TGG | 0.507490 | 4_2:+13845381 | Msa0590370:CDS |
| CAACATCTTCAGCAAAATCA+TGG | 0.508374 | 4_2:-13846462 | None:intergenic |
| AGTGTGTTGATCTTTGGCCT+AGG | 0.508867 | 4_2:+13846872 | Msa0590370:CDS |
| AGAAATCGCAATTCTATGGC+TGG | 0.511177 | 4_2:+13845478 | Msa0590370:CDS |
| ACATGGTCTTTAATGCTGCT+GGG | 0.512850 | 4_2:+13843457 | Msa0590370:CDS |
| AATATCCGGGTGTAAATCCT+TGG | 0.526068 | 4_2:-13843308 | None:intergenic |
| TGCTGAAGATGTTGATGAAG+AGG | 0.530294 | 4_2:+13846417 | Msa0590370:intron |
| CTTCACCAAGGATTTACACC+CGG | 0.542358 | 4_2:+13843303 | Msa0590370:CDS |
| ACGTCGTCTCCCATCCAACT+TGG | 0.544669 | 4_2:-13845391 | None:intergenic |
| ATTGTAGGTTCTGCTATCAC+AGG | 0.547291 | 4_2:+13846835 | Msa0590370:intron |
| CAGAATCAACACTCATACAA+TGG | 0.548660 | 4_2:-13846914 | None:intergenic |
| TCTTGGAGCTACAATGGAGA+TGG | 0.548716 | 4_2:+13843074 | None:intergenic |
| TATTGGATTTGGACATGCCA+TGG | 0.549640 | 4_2:+13843327 | Msa0590370:CDS |
| TGTTTGCTTCATCTGGAATG+AGG | 0.549692 | 4_2:-13843272 | None:intergenic |
| CAGAATACCACATTTGGTCT+AGG | 0.549997 | 4_2:+13845959 | Msa0590370:intron |
| GTATTAAAACTGCCACAAAA+GGG | 0.556599 | 4_2:-13846963 | None:intergenic |
| GAGGATAAACCAAGTTGGAT+GGG | 0.558345 | 4_2:+13845382 | Msa0590370:CDS |
| TCAGTTGGCATTTCATACGT+TGG | 0.564003 | 4_2:-13846004 | None:intergenic |
| ATTTGGAGGATAAACCAAGT+TGG | 0.565075 | 4_2:+13845377 | Msa0590370:CDS |
| ACCCATATATCCAAATCAGT+TGG | 0.567496 | 4_2:-13846019 | None:intergenic |
| AAACTGCCACAAAAGGGCAT+TGG | 0.569203 | 4_2:-13846957 | None:intergenic |
| TATACATCCATGTCCGATGA+GGG | 0.570211 | 4_2:-13843104 | None:intergenic |
| CCTGATAATTGCTTCCATGA+CGG | 0.572248 | 4_2:-13845116 | None:intergenic |
| ATGTATAATAGGCTTCATCC+TGG | 0.578331 | 4_2:+13843120 | Msa0590370:CDS |
| TACATCCATGTCCGATGAGG+GGG | 0.580626 | 4_2:-13843102 | None:intergenic |
| ACTGTTGGGGTTTGAAACAT+GGG | 0.581536 | 4_2:-13846320 | None:intergenic |
| TATCACAGGTCCAATTGGTA+AGG | 0.581708 | 4_2:+13846849 | Msa0590370:CDS |
| CAACACTCATACAATGGCAT+TGG | 0.586391 | 4_2:-13846908 | None:intergenic |
| CAGCATTAAAGACCATGTCT+TGG | 0.587261 | 4_2:-13843452 | None:intergenic |
| GCTATAGATATGGATGCTCC+TGG | 0.588868 | 4_2:+13843384 | Msa0590370:CDS |
| CATGTCCAAATCCAATATCC+GGG | 0.593988 | 4_2:-13843321 | None:intergenic |
| ATCCTCTCCTAGACCAAATG+TGG | 0.599587 | 4_2:-13845966 | None:intergenic |
| TACACATGCTAATTCAGAAG+AGG | 0.601418 | 4_2:+13846129 | Msa0590370:CDS |
| TAGAAGAGGGAAAACCGTCA+TGG | 0.601838 | 4_2:+13845102 | Msa0590370:CDS |
| TTTCTTTAACTACCAATGTG+TGG | 0.607987 | 4_2:-13845055 | None:intergenic |
| TATACGGTCTCAATTAGAAG+AGG | 0.616182 | 4_2:+13845088 | Msa0590370:CDS |
| GGTGCATCTCTTCAAACTGG+AGG | 0.617352 | 4_2:+13845499 | Msa0590370:CDS |
| TATGGGAGACTCTCTCTCCA+TGG | 0.620579 | 4_2:-13843344 | None:intergenic |
| TGCTGACTATTACTACTACC+AGG | 0.625989 | 4_2:-13843402 | None:intergenic |
| AGAGTCTCCCATATCAATGA+CGG | 0.628536 | 4_2:+13843354 | Msa0590370:CDS |
| CAGGTTTGATCACCACACAT+TGG | 0.634316 | 4_2:+13845043 | Msa0590370:intron |
| TACCACATTTGGTCTAGGAG+AGG | 0.638679 | 4_2:+13845964 | Msa0590370:CDS |
| AGATGAGGCAACAAATGCAA+CGG | 0.644760 | 4_2:+13846221 | Msa0590370:CDS |
| TTATACATCCATGTCCGATG+AGG | 0.647498 | 4_2:-13843105 | None:intergenic |
| ATACGGTCTCAATTAGAAGA+GGG | 0.649151 | 4_2:+13845089 | Msa0590370:CDS |
| ATGAGTCAAAGAAATCATCT+CGG | 0.652827 | 4_2:-13845145 | None:intergenic |
| TTATTCCAATGTAAACGATG+GGG | 0.656802 | 4_2:-13845529 | None:intergenic |
| AACAGTCACATTCTTCACCA+AGG | 0.657054 | 4_2:+13843291 | Msa0590370:CDS |
| ATACATCCATGTCCGATGAG+GGG | 0.666746 | 4_2:-13843103 | None:intergenic |
| CTGCTGGGTTTGATCGTGAG+CGG | 0.687919 | 4_2:+13843472 | Msa0590370:CDS |
| GTAGTAGTAATAGTCAGCAG+TGG | 0.708068 | 4_2:+13843406 | Msa0590370:CDS |
| AGTTGATATATACCAAGACA+TGG | 0.711292 | 4_2:+13843440 | Msa0590370:CDS |
| AAGTAAAACTCAGTCAACGA+CGG | 0.749212 | 4_2:-13845652 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTATAATTTACAGAAAA+AGG | + | chr4_2:13845615-13845634 | Msa0590370:intron | 10.0% |
| !!! | ATTTTGAATTAATATCTCTA+AGG | + | chr4_2:13844997-13845016 | Msa0590370:intron | 15.0% |
| !!! | AGTTTTTATTTTTTATGCAT+TGG | + | chr4_2:13845878-13845897 | Msa0590370:intron | 15.0% |
| !! | AAATTTGAACAAAAAAAAGA+TGG | + | chr4_2:13845925-13845944 | Msa0590370:intron | 15.0% |
| !! | CAGAAAAAATATTTGAATGA+GGG | + | chr4_2:13843207-13843226 | Msa0590370:CDS | 20.0% |
| !!! | TATACATCAATTTTACCTTT+TGG | - | chr4_2:13844245-13844264 | None:intergenic | 20.0% |
| !! | AACAAAGAGAAATGATTATT+TGG | + | chr4_2:13844818-13844837 | Msa0590370:intron | 20.0% |
| !! | TATTACAGAAAAAGTTTACA+TGG | + | chr4_2:13845266-13845285 | Msa0590370:intron | 20.0% |
| !! | AATTTACAGAAAAAGGAAAA+AGG | + | chr4_2:13845622-13845641 | Msa0590370:intron | 20.0% |
| !!! | GACTTCTTTTATTTTCTTTT+AGG | + | chr4_2:13845900-13845919 | Msa0590370:intron | 20.0% |
| !! | ATATGCTAATATGTGAAAAA+AGG | - | chr4_2:13846580-13846599 | None:intergenic | 20.0% |
| !!! | AATACACATATTTTCAACAA+TGG | - | chr4_2:13846616-13846635 | None:intergenic | 20.0% |
| !!! | AATACAAGTGAAATGTTTTT+AGG | + | chr4_2:13846981-13847000 | Msa0590370:three_prime_UTR | 20.0% |
| !! | CATGTATCTGAGTTTTTAAA+CGG | + | chr4_2:13843153-13843172 | Msa0590370:CDS | 25.0% |
| ! | GCAGAAAAAATATTTGAATG+AGG | + | chr4_2:13843206-13843225 | Msa0590370:CDS | 25.0% |
| ! | AACATGTTATAAAAGTTTGG+CGG | - | chr4_2:13843534-13843553 | None:intergenic | 25.0% |
| ! | GTCAACATGTTATAAAAGTT+TGG | - | chr4_2:13843537-13843556 | None:intergenic | 25.0% |
| !! | ATCTTGTTTCAATGATGTTA+TGG | + | chr4_2:13843656-13843675 | Msa0590370:intron | 25.0% |
| ! | TTGGCACTATGAAAATAAAA+GGG | + | chr4_2:13843968-13843987 | Msa0590370:intron | 25.0% |
| ! | TATGAAAATAAAAGGGAGAA+TGG | + | chr4_2:13843975-13843994 | Msa0590370:intron | 25.0% |
| ! | ATTAAGGACAAGAACATATA+AGG | - | chr4_2:13844203-13844222 | None:intergenic | 25.0% |
| ! | AAATGTGTTTCATACTGTTA+TGG | + | chr4_2:13844793-13844812 | Msa0590370:intron | 25.0% |
| !! | GATTCTATTAACTTTCCTTT+TGG | + | chr4_2:13844865-13844884 | Msa0590370:intron | 25.0% |
| !! | TTGTGGTATTATGATTTTAG+TGG | + | chr4_2:13844916-13844935 | Msa0590370:intron | 25.0% |
| ! | AAGAAATTGCTCACATTATA+CGG | + | chr4_2:13845072-13845091 | Msa0590370:CDS | 25.0% |
| !!! | TGCGAAAAAACTTTGAAATA+AGG | + | chr4_2:13845311-13845330 | Msa0590370:CDS | 25.0% |
| !!! | GCGAAAAAACTTTGAAATAA+GGG | + | chr4_2:13845312-13845331 | Msa0590370:CDS | 25.0% |
| !!! | CGAAAAAACTTTGAAATAAG+GGG | + | chr4_2:13845313-13845332 | Msa0590370:CDS | 25.0% |
| !!! | TTGAGATTTTTTTTTGAACG+TGG | - | chr4_2:13845449-13845468 | None:intergenic | 25.0% |
| ! | TAAAAGAAATCGCAATTCTA+TGG | + | chr4_2:13845474-13845493 | Msa0590370:CDS | 25.0% |
| ! | TTTATTCCAATGTAAACGAT+GGG | - | chr4_2:13845533-13845552 | None:intergenic | 25.0% |
| !! | TTTTATTCCAATGTAAACGA+TGG | - | chr4_2:13845534-13845553 | None:intergenic | 25.0% |
| ! | TCGTTTACATTGGAATAAAA+TGG | + | chr4_2:13845534-13845553 | Msa0590370:CDS | 25.0% |
| ! | AGAAGAAACAAAAAAGAATG+TGG | - | chr4_2:13845839-13845858 | None:intergenic | 25.0% |
| !! | ATTCTGTTGGTAGAAAAAAA+GGG | + | chr4_2:13846044-13846063 | Msa0590370:CDS | 25.0% |
| !!! | TTTGTTTGTTGATTTGAAGA+TGG | - | chr4_2:13846109-13846128 | None:intergenic | 25.0% |
| ! | AAATCCCAAATGTTTCATAA+TGG | - | chr4_2:13846287-13846306 | None:intergenic | 25.0% |
| !! | CATATTGATAACTAGTAACT+TGG | + | chr4_2:13846505-13846524 | Msa0590370:intron | 25.0% |
| ! | GTATTGTTATGAATTGTTCT+AGG | + | chr4_2:13846643-13846662 | Msa0590370:intron | 25.0% |
| !! | ATTTTGCAACTTCATAATGA+TGG | + | chr4_2:13847059-13847078 | Msa0590370:three_prime_UTR | 25.0% |
| !! | TCATTTTTGCATAGCTTACA+TGG | - | chr4_2:13843246-13843265 | None:intergenic | 30.0% |
| ! | AGTTGATATATACCAAGACA+TGG | + | chr4_2:13843440-13843459 | Msa0590370:CDS | 30.0% |
| GTATTTCGTACAAAATGAAG+AGG | + | chr4_2:13843494-13843513 | Msa0590370:intron | 30.0% | |
| ACATGTTATAAAAGTTTGGC+GGG | - | chr4_2:13843533-13843552 | None:intergenic | 30.0% | |
| !! | TCTGTTGTATTTTTACATCC+CGG | - | chr4_2:13843582-13843601 | None:intergenic | 30.0% |
| !! | TTCTTCGTTTCTCTAAAGTT+AGG | - | chr4_2:13843723-13843742 | None:intergenic | 30.0% |
| AAGATAGATTGTTGTGTTAG+TGG | + | chr4_2:13843774-13843793 | Msa0590370:intron | 30.0% | |
| AGATAGATTGTTGTGTTAGT+GGG | + | chr4_2:13843775-13843794 | Msa0590370:intron | 30.0% | |
| ! | TTACCTTGTGTTTTATATCG+AGG | - | chr4_2:13843858-13843877 | None:intergenic | 30.0% |
| AAATAATGCATTCTCTTACG+AGG | - | chr4_2:13843888-13843907 | None:intergenic | 30.0% | |
| GTTGGCACTATGAAAATAAA+AGG | + | chr4_2:13843967-13843986 | Msa0590370:intron | 30.0% | |
| TTATATGGTGTAACAATCAC+TGG | - | chr4_2:13844152-13844171 | None:intergenic | 30.0% | |
| TTCTTGTCCTTAATTATTCC+TGG | + | chr4_2:13844209-13844228 | Msa0590370:intron | 30.0% | |
| ! | ATTTTACCTTTTGGACAATC+TGG | - | chr4_2:13844236-13844255 | None:intergenic | 30.0% |
| TAGATGAATTGCAACAATTG+TGG | + | chr4_2:13844279-13844298 | Msa0590370:intron | 30.0% | |
| ACAAACAGAATCTTTCAGAT+TGG | + | chr4_2:13844451-13844470 | Msa0590370:intron | 30.0% | |
| GAATCTTTCAGATTGGATAA+CGG | + | chr4_2:13844458-13844477 | Msa0590370:intron | 30.0% | |
| !! | GACCAAAAGAAGCATATTTT+GGG | + | chr4_2:13844697-13844716 | Msa0590370:intron | 30.0% |
| ! | ATCCCAAAATATGCTTCTTT+TGG | - | chr4_2:13844702-13844721 | None:intergenic | 30.0% |
| !!! | TATTTTGGGATTTGCCTTAT+TGG | + | chr4_2:13844711-13844730 | Msa0590370:intron | 30.0% |
| ! | GTAGACTCAATTATCTTTTC+AGG | + | chr4_2:13845024-13845043 | Msa0590370:intron | 30.0% |
| TTTCTTTAACTACCAATGTG+TGG | - | chr4_2:13845058-13845077 | None:intergenic | 30.0% | |
| ATGAGTCAAAGAAATCATCT+CGG | - | chr4_2:13845148-13845167 | None:intergenic | 30.0% | |
| TGATTTCTTTGACTCATTCA+TGG | + | chr4_2:13845151-13845170 | Msa0590370:CDS | 30.0% | |
| !! | TGCTTAAATCTGTTCTAAAG+AGG | - | chr4_2:13845215-13845234 | None:intergenic | 30.0% |
| !!! | AGATTTTTTTTTGAACGTGG+AGG | - | chr4_2:13845446-13845465 | None:intergenic | 30.0% |
| TTATTCCAATGTAAACGATG+GGG | - | chr4_2:13845532-13845551 | None:intergenic | 30.0% | |
| ! | GATTCTGTTGGTAGAAAAAA+AGG | + | chr4_2:13846043-13846062 | Msa0590370:CDS | 30.0% |
| AGAAAAAAAGGGAGGATATT+TGG | + | chr4_2:13846055-13846074 | Msa0590370:CDS | 30.0% | |
| ! | TTGATTTGAAGATGGAATCA+AGG | - | chr4_2:13846101-13846120 | None:intergenic | 30.0% |
| TGTTGCCATTATGAAACATT+TGG | + | chr4_2:13846279-13846298 | Msa0590370:CDS | 30.0% | |
| GTTGCCATTATGAAACATTT+GGG | + | chr4_2:13846280-13846299 | Msa0590370:CDS | 30.0% | |
| ! | ATGAAACATTTGGGATTTGT+TGG | + | chr4_2:13846289-13846308 | Msa0590370:CDS | 30.0% |
| ! | TGCTCATTTTATTCACTGTT+GGG | - | chr4_2:13846337-13846356 | None:intergenic | 30.0% |
| ! | TAACTTGGAGTCTGAAATTA+TGG | + | chr4_2:13846520-13846539 | Msa0590370:intron | 30.0% |
| TAGCAAACTAACAAAAAGAC+AGG | - | chr4_2:13846731-13846750 | None:intergenic | 30.0% | |
| AATCAGACAAAACAGTCAAA+AGG | - | chr4_2:13846764-13846783 | None:intergenic | 30.0% | |
| TTCATTGCTGGTATTTGATT+TGG | + | chr4_2:13846786-13846805 | Msa0590370:intron | 30.0% | |
| ! | TCATTGCTGGTATTTGATTT+GGG | + | chr4_2:13846787-13846806 | Msa0590370:intron | 30.0% |
| GTATTAAAACTGCCACAAAA+GGG | - | chr4_2:13846966-13846985 | None:intergenic | 30.0% | |
| TGTATTAAAACTGCCACAAA+AGG | - | chr4_2:13846967-13846986 | None:intergenic | 30.0% | |
| ATCGGACATGGATGTATAAT+AGG | + | chr4_2:13843109-13843128 | Msa0590370:CDS | 35.0% | |
| ATGTATAATAGGCTTCATCC+TGG | + | chr4_2:13843120-13843139 | Msa0590370:CDS | 35.0% | |
| ATCTGCTTCTCTTAAGATGT+TGG | + | chr4_2:13843605-13843624 | Msa0590370:intron | 35.0% | |
| TCTGCTTCTCTTAAGATGTT+GGG | + | chr4_2:13843606-13843625 | Msa0590370:intron | 35.0% | |
| ! | TTAGGCGGAATTACATTTTC+AGG | - | chr4_2:13843705-13843724 | None:intergenic | 35.0% |
| !! | TTCGTTTCTCTAAAGTTAGG+CGG | - | chr4_2:13843720-13843739 | None:intergenic | 35.0% |
| AAACGAAGAAAATTGCAGCT+GGG | + | chr4_2:13843733-13843752 | Msa0590370:intron | 35.0% | |
| TGGGTGTATGTTGTATTACA+AGG | + | chr4_2:13843794-13843813 | Msa0590370:intron | 35.0% | |
| GTGTATGTTGTATTACAAGG+AGG | + | chr4_2:13843797-13843816 | Msa0590370:intron | 35.0% | |
| CAAGGAGGACATAAATTTGA+AGG | + | chr4_2:13843812-13843831 | Msa0590370:intron | 35.0% | |
| AAGGACAAGAACATATAAGG+AGG | - | chr4_2:13844200-13844219 | None:intergenic | 35.0% | |
| ATCTGGACCAGGAATAATTA+AGG | - | chr4_2:13844219-13844238 | None:intergenic | 35.0% | |
| TGTTGCAATTCATCTATCAG+CGG | - | chr4_2:13844275-13844294 | None:intergenic | 35.0% | |
| TAACGTATGATGCATCTAAG+AGG | + | chr4_2:13844315-13844334 | Msa0590370:intron | 35.0% | |
| GATTGAGAGCTTCATTAATG+TGG | + | chr4_2:13844348-13844367 | Msa0590370:intron | 35.0% | |
| ! | TAAATGATTTTCCAGCCTAC+AGG | + | chr4_2:13844375-13844394 | Msa0590370:intron | 35.0% |
| CGTCTAAAAGGATGATCATA+AGG | - | chr4_2:13844524-13844543 | None:intergenic | 35.0% | |
| ! | TCATCCTTTTAGACGAAACA+AGG | + | chr4_2:13844529-13844548 | Msa0590370:intron | 35.0% |
| ! | TTGACCTTGTTTCGTCTAAA+AGG | - | chr4_2:13844536-13844555 | None:intergenic | 35.0% |
| TTTCCCAAGATAACTCATTC+AGG | + | chr4_2:13844635-13844654 | Msa0590370:intron | 35.0% | |
| TTCCCAAGATAACTCATTCA+GGG | + | chr4_2:13844636-13844655 | Msa0590370:intron | 35.0% | |
| !! | GGACCAAAAGAAGCATATTT+TGG | + | chr4_2:13844696-13844715 | Msa0590370:intron | 35.0% |
| AATAGGTTGTGTCTCCAATA+AGG | - | chr4_2:13844728-13844747 | None:intergenic | 35.0% | |
| TTGACGTTATGCATATTGAG+AGG | + | chr4_2:13844759-13844778 | Msa0590370:intron | 35.0% | |
| ! | GCATTGTTACTTGATCCAAA+AGG | - | chr4_2:13844883-13844902 | None:intergenic | 35.0% |
| TCATAATACCACAAGCACAA+CGG | - | chr4_2:13844910-13844929 | None:intergenic | 35.0% | |
| TATACGGTCTCAATTAGAAG+AGG | + | chr4_2:13845088-13845107 | Msa0590370:CDS | 35.0% | |
| ATACGGTCTCAATTAGAAGA+GGG | + | chr4_2:13845089-13845108 | Msa0590370:CDS | 35.0% | |
| GCAAGAAGTTCGGAAAAATT+TGG | + | chr4_2:13845360-13845379 | Msa0590370:CDS | 35.0% | |
| AGAAGTTCGGAAAAATTTGG+AGG | + | chr4_2:13845363-13845382 | Msa0590370:CDS | 35.0% | |
| ATTTGGAGGATAAACCAAGT+TGG | + | chr4_2:13845377-13845396 | Msa0590370:CDS | 35.0% | |
| GGAATGACTTGAAGCAATAT+TGG | + | chr4_2:13845416-13845435 | Msa0590370:CDS | 35.0% | |
| AAGTAAAACTCAGTCAACGA+CGG | - | chr4_2:13845655-13845674 | None:intergenic | 35.0% | |
| ATCGCAAAAAGGATCAAAGT+TGG | + | chr4_2:13845683-13845702 | Msa0590370:CDS | 35.0% | |
| TCGCAAAAAGGATCAAAGTT+GGG | + | chr4_2:13845684-13845703 | Msa0590370:CDS | 35.0% | |
| AAAAAGGATCAAAGTTGGGT+GGG | + | chr4_2:13845688-13845707 | Msa0590370:CDS | 35.0% | |
| CACATGAGTGCAAACATATA+TGG | - | chr4_2:13845763-13845782 | None:intergenic | 35.0% | |
| TATATGTTTGCACTCATGTG+TGG | + | chr4_2:13845763-13845782 | Msa0590370:intron | 35.0% | |
| TCTACTCAGAATACCACATT+TGG | + | chr4_2:13845953-13845972 | Msa0590370:intron | 35.0% | |
| GTATGAAATGCCAACTGATT+TGG | + | chr4_2:13846009-13846028 | Msa0590370:CDS | 35.0% | |
| !! | TGCCAACTGATTTGGATATA+TGG | + | chr4_2:13846017-13846036 | Msa0590370:CDS | 35.0% |
| !! | GCCAACTGATTTGGATATAT+GGG | + | chr4_2:13846018-13846037 | Msa0590370:CDS | 35.0% |
| ACCCATATATCCAAATCAGT+TGG | - | chr4_2:13846022-13846041 | None:intergenic | 35.0% | |
| GATATATGGGTAGATTCTGT+TGG | + | chr4_2:13846031-13846050 | Msa0590370:CDS | 35.0% | |
| TACACATGCTAATTCAGAAG+AGG | + | chr4_2:13846129-13846148 | Msa0590370:CDS | 35.0% | |
| ! | GCTCATTTTATTCACTGTTG+GGG | - | chr4_2:13846336-13846355 | None:intergenic | 35.0% |
| ! | GTGCTCATTTTATTCACTGT+TGG | - | chr4_2:13846338-13846357 | None:intergenic | 35.0% |
| AAATGAGCACATTGATGAAG+AGG | + | chr4_2:13846348-13846367 | Msa0590370:intron | 35.0% | |
| CAACATCTTCAGCAAAATCA+TGG | - | chr4_2:13846378-13846397 | None:intergenic | 35.0% | |
| CAACATCTTCAGCAAAATCA+TGG | - | chr4_2:13846378-13846397 | None:intergenic | 35.0% | |
| !! | CCATGTGAATACTTTTAGAG+AGG | - | chr4_2:13846691-13846710 | None:intergenic | 35.0% |
| !! | CCTCTCTAAAAGTATTCACA+TGG | + | chr4_2:13846688-13846707 | Msa0590370:intron | 35.0% |
| CAAACTAACAAAAAGACAGG+TGG | - | chr4_2:13846728-13846747 | None:intergenic | 35.0% | |
| ! | TTGTCTGATTGATTCATTGC+TGG | + | chr4_2:13846774-13846793 | Msa0590370:intron | 35.0% |
| TATGTCATGTTGTCCATTGT+AGG | + | chr4_2:13846820-13846839 | Msa0590370:intron | 35.0% | |
| CAGAATCAACACTCATACAA+TGG | - | chr4_2:13846917-13846936 | None:intergenic | 35.0% | |
| TATACATCCATGTCCGATGA+GGG | - | chr4_2:13843107-13843126 | None:intergenic | 40.0% | |
| TTATACATCCATGTCCGATG+AGG | - | chr4_2:13843108-13843127 | None:intergenic | 40.0% | |
| ! | TGTTTGCTTCATCTGGAATG+AGG | - | chr4_2:13843275-13843294 | None:intergenic | 40.0% |
| ATGTGACTGTTTGCTTCATC+TGG | - | chr4_2:13843282-13843301 | None:intergenic | 40.0% | |
| AACAGTCACATTCTTCACCA+AGG | + | chr4_2:13843291-13843310 | Msa0590370:CDS | 40.0% | |
| AATATCCGGGTGTAAATCCT+TGG | - | chr4_2:13843311-13843330 | None:intergenic | 40.0% | |
| AAGGATTTACACCCGGATAT+TGG | + | chr4_2:13843310-13843329 | Msa0590370:CDS | 40.0% | |
| TTACACCCGGATATTGGATT+TGG | + | chr4_2:13843316-13843335 | Msa0590370:CDS | 40.0% | |
| CATGTCCAAATCCAATATCC+GGG | - | chr4_2:13843324-13843343 | None:intergenic | 40.0% | |
| GCATGTCCAAATCCAATATC+CGG | - | chr4_2:13843325-13843344 | None:intergenic | 40.0% | |
| TATTGGATTTGGACATGCCA+TGG | + | chr4_2:13843327-13843346 | Msa0590370:CDS | 40.0% | |
| AGAGTCTCCCATATCAATGA+CGG | + | chr4_2:13843354-13843373 | Msa0590370:CDS | 40.0% | |
| ATCTTCGCCGTCATTGATAT+GGG | - | chr4_2:13843364-13843383 | None:intergenic | 40.0% | |
| ! | TGCTGACTATTACTACTACC+AGG | - | chr4_2:13843405-13843424 | None:intergenic | 40.0% |
| GTAGTAGTAATAGTCAGCAG+TGG | + | chr4_2:13843406-13843425 | Msa0590370:CDS | 40.0% | |
| CAGCATTAAAGACCATGTCT+TGG | - | chr4_2:13843455-13843474 | None:intergenic | 40.0% | |
| ACATGGTCTTTAATGCTGCT+GGG | + | chr4_2:13843457-13843476 | Msa0590370:CDS | 40.0% | |
| TAAAAGTTTGGCGGGAAGTT+GGG | - | chr4_2:13843525-13843544 | None:intergenic | 40.0% | |
| ATAAAAGTTTGGCGGGAAGT+TGG | - | chr4_2:13843526-13843545 | None:intergenic | 40.0% | |
| GAAACGAAGAAAATTGCAGC+TGG | + | chr4_2:13843732-13843751 | Msa0590370:intron | 40.0% | |
| GAGCCTCGATATAAAACACA+AGG | + | chr4_2:13843852-13843871 | Msa0590370:intron | 40.0% | |
| ! | ATGCGTATAATCTCTGAAGG+CGG | - | chr4_2:13843923-13843942 | None:intergenic | 40.0% |
| GTGATGCGTATAATCTCTGA+AGG | - | chr4_2:13843926-13843945 | None:intergenic | 40.0% | |
| ! | CTCATGTGCTTTGCAGATTT+TGG | - | chr4_2:13843948-13843967 | None:intergenic | 40.0% |
| AATCTGCAAAGCACATGAGT+TGG | + | chr4_2:13843949-13843968 | Msa0590370:intron | 40.0% | |
| TGTTGTGTCATCCTTCAGAT+GGG | + | chr4_2:13844000-13844019 | Msa0590370:intron | 40.0% | |
| ! | TCTGACATTTCTAGGTTCTG+AGG | - | chr4_2:13844066-13844085 | None:intergenic | 40.0% |
| GAACCTAGAAATGTCAGACT+TGG | + | chr4_2:13844068-13844087 | Msa0590370:intron | 40.0% | |
| AGACCAAGTCTGACATTTCT+AGG | - | chr4_2:13844074-13844093 | None:intergenic | 40.0% | |
| ! | CCAACAAGAATATGGTCTTG+CGG | - | chr4_2:13844129-13844148 | None:intergenic | 40.0% |
| ATCACTGGCCAACAAGAATA+TGG | - | chr4_2:13844137-13844156 | None:intergenic | 40.0% | |
| TACACCATATAACCTACCTC+CGG | + | chr4_2:13844160-13844179 | Msa0590370:intron | 40.0% | |
| TTGCAACAATTGTGGACACA+TGG | + | chr4_2:13844287-13844306 | Msa0590370:intron | 40.0% | |
| CTGTTTGTTCCATGCAAACT+GGG | - | chr4_2:13844439-13844458 | None:intergenic | 40.0% | |
| TCTGTTTGTTCCATGCAAAC+TGG | - | chr4_2:13844440-13844459 | None:intergenic | 40.0% | |
| ! | TCTTTCAGATTGGATAACGG+AGG | + | chr4_2:13844461-13844480 | Msa0590370:intron | 40.0% |
| !! | CTTTCAGATTGGATAACGGA+GGG | + | chr4_2:13844462-13844481 | Msa0590370:intron | 40.0% |
| ! | ATAACGGAGGGAAACAATCA+TGG | + | chr4_2:13844474-13844493 | Msa0590370:intron | 40.0% |
| AATCATGGTTTGATTGCAGC+AGG | + | chr4_2:13844489-13844508 | Msa0590370:intron | 40.0% | |
| ATATGAATGAACCTCCTCGA+AGG | + | chr4_2:13844576-13844595 | Msa0590370:intron | 40.0% | |
| CAAGTGTGGGAAAAGGTTAT+TGG | + | chr4_2:13844611-13844630 | Msa0590370:intron | 40.0% | |
| TGCCCTGAATGAGTTATCTT+GGG | - | chr4_2:13844641-13844660 | None:intergenic | 40.0% | |
| TTGCCCTGAATGAGTTATCT+TGG | - | chr4_2:13844642-13844661 | None:intergenic | 40.0% | |
| ATTGGAGACACAACCTATTG+AGG | + | chr4_2:13844729-13844748 | Msa0590370:intron | 40.0% | |
| CCTGATAATTGCTTCCATGA+CGG | - | chr4_2:13845119-13845138 | None:intergenic | 40.0% | |
| ! | CTCAGTTGATGCAAGAAGTT+CGG | + | chr4_2:13845350-13845369 | Msa0590370:CDS | 40.0% |
| ! | GAGGATAAACCAAGTTGGAT+GGG | + | chr4_2:13845382-13845401 | Msa0590370:CDS | 40.0% |
| AGAAATCGCAATTCTATGGC+TGG | + | chr4_2:13845478-13845497 | Msa0590370:CDS | 40.0% | |
| CAATTCCCCATCGTTTACAT+TGG | + | chr4_2:13845524-13845543 | Msa0590370:CDS | 40.0% | |
| ! | GATCCTTTTTGCGATGTGTA+CGG | - | chr4_2:13845678-13845697 | None:intergenic | 40.0% |
| CAAAAAGGATCAAAGTTGGG+TGG | + | chr4_2:13845687-13845706 | Msa0590370:CDS | 40.0% | |
| CAGAATACCACATTTGGTCT+AGG | + | chr4_2:13845959-13845978 | Msa0590370:intron | 40.0% | |
| TCAGTTGGCATTTCATACGT+TGG | - | chr4_2:13846007-13846026 | None:intergenic | 40.0% | |
| ! | CTGTTGGTAGAAAAAAAGGG+AGG | + | chr4_2:13846047-13846066 | Msa0590370:CDS | 40.0% |
| AAAGGGAGGATATTTGGTCT+TGG | + | chr4_2:13846061-13846080 | Msa0590370:CDS | 40.0% | |
| AACAAGAGAAGTTGCAGATG+AGG | + | chr4_2:13846206-13846225 | Msa0590370:CDS | 40.0% | |
| AGATGAGGCAACAAATGCAA+CGG | + | chr4_2:13846221-13846240 | Msa0590370:CDS | 40.0% | |
| ! | ACTGTTGGGGTTTGAAACAT+GGG | - | chr4_2:13846323-13846342 | None:intergenic | 40.0% |
| ! | TGCTGAAGATGTTGATGAAG+AGG | + | chr4_2:13846384-13846403 | Msa0590370:intron | 40.0% |
| TGTGATAGCAGAACCTACAA+TGG | - | chr4_2:13846836-13846855 | None:intergenic | 40.0% | |
| ATTGTAGGTTCTGCTATCAC+AGG | + | chr4_2:13846835-13846854 | Msa0590370:intron | 40.0% | |
| TATCACAGGTCCAATTGGTA+AGG | + | chr4_2:13846849-13846868 | Msa0590370:CDS | 40.0% | |
| TCAACACACTCCTTACCAAT+TGG | - | chr4_2:13846862-13846881 | None:intergenic | 40.0% | |
| ! | GTAAGGAGTGTGTTGATCTT+TGG | + | chr4_2:13846866-13846885 | Msa0590370:CDS | 40.0% |
| CAACACTCATACAATGGCAT+TGG | - | chr4_2:13846911-13846930 | None:intergenic | 40.0% | |
| ATACATCCATGTCCGATGAG+GGG | - | chr4_2:13843106-13843125 | None:intergenic | 45.0% | |
| ! | GATACATGTCCTTTTCGTCC+AGG | - | chr4_2:13843141-13843160 | None:intergenic | 45.0% |
| CTTCACCAAGGATTTACACC+CGG | + | chr4_2:13843303-13843322 | Msa0590370:CDS | 45.0% | |
| CATCTTCGCCGTCATTGATA+TGG | - | chr4_2:13843365-13843384 | None:intergenic | 45.0% | |
| CGGCGAAGATGCTATAGATA+TGG | + | chr4_2:13843374-13843393 | Msa0590370:CDS | 45.0% | |
| GCTATAGATATGGATGCTCC+TGG | + | chr4_2:13843384-13843403 | Msa0590370:CDS | 45.0% | |
| GACATGGTCTTTAATGCTGC+TGG | + | chr4_2:13843456-13843475 | Msa0590370:CDS | 45.0% | |
| CTTCAGCTCAACAACCATTG+TGG | + | chr4_2:13843556-13843575 | Msa0590370:intron | 45.0% | |
| ! | TTTTTACATCCCGGCCACAA+TGG | - | chr4_2:13843573-13843592 | None:intergenic | 45.0% |
| ! | TGCGTATAATCTCTGAAGGC+GGG | - | chr4_2:13843922-13843941 | None:intergenic | 45.0% |
| GTGTTGTGTCATCCTTCAGA+TGG | + | chr4_2:13843999-13844018 | Msa0590370:intron | 45.0% | |
| GTTGTGTCATCCTTCAGATG+GGG | + | chr4_2:13844001-13844020 | Msa0590370:intron | 45.0% | |
| CCGCAAGACCATATTCTTGT+TGG | + | chr4_2:13844126-13844145 | Msa0590370:intron | 45.0% | |
| AACTCCGGAGGTAGGTTATA+TGG | - | chr4_2:13844167-13844186 | None:intergenic | 45.0% | |
| ATTTGCATGCCCAGTTTGCA+TGG | + | chr4_2:13844427-13844446 | Msa0590370:intron | 45.0% | |
| GTTAAGTGGCGAACAAGTGT+GGG | + | chr4_2:13844598-13844617 | Msa0590370:intron | 45.0% | |
| TCCAGTTATGCCGAATTCCA+CGG | - | chr4_2:13844679-13844698 | None:intergenic | 45.0% | |
| CGTCAAGATTGTGCCTCAAT+AGG | - | chr4_2:13844745-13844764 | None:intergenic | 45.0% | |
| CAGGTTTGATCACCACACAT+TGG | + | chr4_2:13845043-13845062 | Msa0590370:intron | 45.0% | |
| TAGAAGAGGGAAAACCGTCA+TGG | + | chr4_2:13845102-13845121 | Msa0590370:CDS | 45.0% | |
| CCGTCATGGAAGCAATTATC+AGG | + | chr4_2:13845116-13845135 | Msa0590370:CDS | 45.0% | |
| TACATGGCAACCAGAGCATA+AGG | + | chr4_2:13845282-13845301 | Msa0590370:CDS | 45.0% | |
| ! | CGCACTTTTACCTTATGCTC+TGG | - | chr4_2:13845295-13845314 | None:intergenic | 45.0% |
| ! | GGAGGATAAACCAAGTTGGA+TGG | + | chr4_2:13845381-13845400 | Msa0590370:CDS | 45.0% |
| CTTCCGTACACATCGCAAAA+AGG | + | chr4_2:13845672-13845691 | Msa0590370:CDS | 45.0% | |
| GTGTGGCTCAAAGGAAGATT+TGG | + | chr4_2:13845780-13845799 | Msa0590370:intron | 45.0% | |
| TACCACATTTGGTCTAGGAG+AGG | + | chr4_2:13845964-13845983 | Msa0590370:CDS | 45.0% | |
| ATCCTCTCCTAGACCAAATG+TGG | - | chr4_2:13845969-13845988 | None:intergenic | 45.0% | |
| ! | CACTGTTGGGGTTTGAAACA+TGG | - | chr4_2:13846324-13846343 | None:intergenic | 45.0% |
| TCTGCTATCACAGGTCCAAT+TGG | + | chr4_2:13846844-13846863 | Msa0590370:CDS | 45.0% | |
| ! | AGTGTGTTGATCTTTGGCCT+AGG | + | chr4_2:13846872-13846891 | Msa0590370:CDS | 45.0% |
| ! | GTAGTTCCAATGCCCTTTTG+TGG | + | chr4_2:13846951-13846970 | Msa0590370:three_prime_UTR | 45.0% |
| ! | AAACTGCCACAAAAGGGCAT+TGG | - | chr4_2:13846960-13846979 | None:intergenic | 45.0% |
| AGATGGAAGTTCCCCCTCAT+CGG | + | chr4_2:13843091-13843110 | Msa0590370:CDS | 50.0% | |
| TACATCCATGTCCGATGAGG+GGG | - | chr4_2:13843105-13843124 | None:intergenic | 50.0% | |
| AGGCTTCATCCTGGACGAAA+AGG | + | chr4_2:13843129-13843148 | Msa0590370:CDS | 50.0% | |
| TATGGGAGACTCTCTCTCCA+TGG | - | chr4_2:13843347-13843366 | None:intergenic | 50.0% | |
| AGCTCAACAACCATTGTGGC+CGG | + | chr4_2:13843560-13843579 | Msa0590370:intron | 50.0% | |
| ! | CGTATAATCTCTGAAGGCGG+GGG | - | chr4_2:13843920-13843939 | None:intergenic | 50.0% |
| ! | GCGTATAATCTCTGAAGGCG+GGG | - | chr4_2:13843921-13843940 | None:intergenic | 50.0% |
| !! | CTAGGTTCTGAGGCGAATTC+AGG | - | chr4_2:13844056-13844075 | None:intergenic | 50.0% |
| ! | AGACTTGGTCTGTGTGCTGA+TGG | + | chr4_2:13844083-13844102 | Msa0590370:intron | 50.0% |
| ! | TCTTGCGGATTGACCGAAAG+GGG | - | chr4_2:13844114-13844133 | None:intergenic | 50.0% |
| ! | GTCTTGCGGATTGACCGAAA+GGG | - | chr4_2:13844115-13844134 | None:intergenic | 50.0% |
| TCATACACAACTCCGGAGGT+AGG | - | chr4_2:13844175-13844194 | None:intergenic | 50.0% | |
| !! | GGAGGCATCATACACAACTC+CGG | - | chr4_2:13844182-13844201 | None:intergenic | 50.0% |
| ! | CCTTTTGGACAATCTGGACC+AGG | - | chr4_2:13844230-13844249 | None:intergenic | 50.0% |
| CCTGGTCCAGATTGTCCAAA+AGG | + | chr4_2:13844227-13844246 | Msa0590370:intron | 50.0% | |
| CAGCCTACAGGATGTTGTCA+GGG | + | chr4_2:13844387-13844406 | Msa0590370:intron | 50.0% | |
| TTGTCAGGGTGGAGTACAGT+AGG | + | chr4_2:13844401-13844420 | Msa0590370:intron | 50.0% | |
| GAACCTCCTCGAAGGTTAAG+TGG | + | chr4_2:13844584-13844603 | Msa0590370:intron | 50.0% | |
| TGTTCGCCACTTAACCTTCG+AGG | - | chr4_2:13844593-13844612 | None:intergenic | 50.0% | |
| GGTTAAGTGGCGAACAAGTG+TGG | + | chr4_2:13844597-13844616 | Msa0590370:intron | 50.0% | |
| TGGCGAACAAGTGTGGGAAA+AGG | + | chr4_2:13844604-13844623 | Msa0590370:intron | 50.0% | |
| TCAGGGCAATGCAATGTTCC+TGG | + | chr4_2:13844653-13844672 | Msa0590370:intron | 50.0% | |
| ATGTTCCTGGCCGTGGAATT+CGG | + | chr4_2:13844666-13844685 | Msa0590370:intron | 50.0% | |
| ATGCAAGACCGTTGTGCTTG+TGG | + | chr4_2:13844899-13844918 | Msa0590370:intron | 50.0% | |
| GCTGGTGCATCTCTTCAAAC+TGG | + | chr4_2:13845496-13845515 | Msa0590370:CDS | 50.0% | |
| GGTGCATCTCTTCAAACTGG+AGG | + | chr4_2:13845499-13845518 | Msa0590370:CDS | 50.0% | |
| TGCACTCATGTGTGGCTCAA+AGG | + | chr4_2:13845771-13845790 | Msa0590370:intron | 50.0% | |
| TTGGCAGCACTTGCAATCCT+AGG | - | chr4_2:13846892-13846911 | None:intergenic | 50.0% | |
| AAGTTCCCCCTCATCGGACA+TGG | + | chr4_2:13843097-13843116 | Msa0590370:CDS | 55.0% | |
| CTGCTGGGTTTGATCGTGAG+CGG | + | chr4_2:13843472-13843491 | Msa0590370:CDS | 55.0% | |
| GCTCAACAACCATTGTGGCC+GGG | + | chr4_2:13843561-13843580 | Msa0590370:intron | 55.0% | |
| ATCCTTCAGATGGGGAAGCG+TGG | + | chr4_2:13844009-13844028 | Msa0590370:intron | 55.0% | |
| TTCCACGCTTCCCCATCTGA+AGG | - | chr4_2:13844014-13844033 | None:intergenic | 55.0% | |
| GCTGATGGCTTCACCCCTTT+CGG | + | chr4_2:13844098-13844117 | Msa0590370:intron | 55.0% | |
| ! | GGTCTTGCGGATTGACCGAA+AGG | - | chr4_2:13844116-13844135 | None:intergenic | 55.0% |
| GGCATCATACACAACTCCGG+AGG | - | chr4_2:13844179-13844198 | None:intergenic | 55.0% | |
| CCTGACAACATCCTGTAGGC+TGG | - | chr4_2:13844389-13844408 | None:intergenic | 55.0% | |
| CCAGCCTACAGGATGTTGTC+AGG | + | chr4_2:13844386-13844405 | Msa0590370:intron | 55.0% | |
| CCACCCTGACAACATCCTGT+AGG | - | chr4_2:13844393-13844412 | None:intergenic | 55.0% | |
| CCTACAGGATGTTGTCAGGG+TGG | + | chr4_2:13844390-13844409 | Msa0590370:intron | 55.0% | |
| TCGCCACTTAACCTTCGAGG+AGG | - | chr4_2:13844590-13844609 | None:intergenic | 55.0% | |
| CAATGCAATGTTCCTGGCCG+TGG | + | chr4_2:13844659-13844678 | Msa0590370:intron | 55.0% | |
| TTATGCCGAATTCCACGGCC+AGG | - | chr4_2:13844674-13844693 | None:intergenic | 55.0% | |
| GCCGTGGAATTCGGCATAAC+TGG | + | chr4_2:13844675-13844694 | Msa0590370:intron | 55.0% | |
| ACGTCGTCTCCCATCCAACT+TGG | - | chr4_2:13845394-13845413 | None:intergenic | 55.0% | |
| GTTGGATGGGAGACGACGTT+TGG | + | chr4_2:13845395-13845414 | Msa0590370:CDS | 55.0% | |
| ! | CTCTGAAGGCGGGGGATAAG+AGG | - | chr4_2:13843912-13843931 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 13843087 | 13847139 | 13843087 | ID=Msa0590370;Name=Msa0590370 |
| chr4_2 | mRNA | 13843087 | 13847139 | 13843087 | ID=Msa0590370-mRNA-1;Parent=Msa0590370;Name=Msa0590370-mRNA-1;_AED=0.25;_eAED=0.33;_QI=0|0.33|0.57|0.85|1|1|7|215|483 |
| chr4_2 | exon | 13843087 | 13843493 | 13843087 | ID=Msa0590370-mRNA-1:exon:4040;Parent=Msa0590370-mRNA-1 |
| chr4_2 | exon | 13845046 | 13845172 | 13845046 | ID=Msa0590370-mRNA-1:exon:4041;Parent=Msa0590370-mRNA-1 |
| chr4_2 | exon | 13845274 | 13845555 | 13845274 | ID=Msa0590370-mRNA-1:exon:4042;Parent=Msa0590370-mRNA-1 |
| chr4_2 | exon | 13845631 | 13845732 | 13845631 | ID=Msa0590370-mRNA-1:exon:4043;Parent=Msa0590370-mRNA-1 |
| chr4_2 | exon | 13845962 | 13846340 | 13845962 | ID=Msa0590370-mRNA-1:exon:4044;Parent=Msa0590370-mRNA-1 |
| chr4_2 | exon | 13846425 | 13846496 | 13846425 | ID=Msa0590370-mRNA-1:exon:4045;Parent=Msa0590370-mRNA-1 |
| chr4_2 | exon | 13846842 | 13847139 | 13846842 | ID=Msa0590370-mRNA-1:exon:4046;Parent=Msa0590370-mRNA-1 |
| chr4_2 | CDS | 13843087 | 13843493 | 13843087 | ID=Msa0590370-mRNA-1:cds;Parent=Msa0590370-mRNA-1 |
| chr4_2 | CDS | 13845046 | 13845172 | 13845046 | ID=Msa0590370-mRNA-1:cds;Parent=Msa0590370-mRNA-1 |
| chr4_2 | CDS | 13845274 | 13845555 | 13845274 | ID=Msa0590370-mRNA-1:cds;Parent=Msa0590370-mRNA-1 |
| chr4_2 | CDS | 13845631 | 13845732 | 13845631 | ID=Msa0590370-mRNA-1:cds;Parent=Msa0590370-mRNA-1 |
| chr4_2 | CDS | 13845962 | 13846340 | 13845962 | ID=Msa0590370-mRNA-1:cds;Parent=Msa0590370-mRNA-1 |
| chr4_2 | CDS | 13846425 | 13846496 | 13846425 | ID=Msa0590370-mRNA-1:cds;Parent=Msa0590370-mRNA-1 |
| chr4_2 | CDS | 13846842 | 13846924 | 13846842 | ID=Msa0590370-mRNA-1:cds;Parent=Msa0590370-mRNA-1 |
| chr4_2 | three_prime_UTR | 13846925 | 13847139 | 13846925 | ID=Msa0590370-mRNA-1:three_prime_utr;Parent=Msa0590370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
