AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0372240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372240 MtrunA17_Chr3g0120531 83.478 115 18 1 66 179 1 115 6.44e-55 169
Msa0372240 MtrunA17_Chr3g0120541 69.748 119 27 3 66 179 1 115 9.38e-47 149
Msa0372240 MtrunA17_Chr3g0120551 57.983 119 43 3 66 179 1 117 4.38e-36 122
Msa0372240 MtrunA17_Chr2g0290831 51.351 74 36 0 68 141 2 75 8.07e-19 76.6
Msa0372240 MtrunA17_Chr5g0438551 43.609 133 51 5 69 178 2 133 8.28e-19 78.2
Msa0372240 MtrunA17_Chr6g0483521 50.000 62 31 0 68 129 2 63 4.12e-15 70.5
Msa0372240 MtrunA17_Chr6g0483511 44.286 70 39 0 68 137 2 71 4.44e-14 67.0
Msa0372240 MtrunA17_Chr6g0483581 45.205 73 40 0 68 140 2 74 9.45e-14 67.0
Msa0372240 MtrunA17_Chr6g0483561 44.444 72 40 0 68 139 2 73 9.50e-13 64.3
Msa0372240 MtrunA17_Chr6g0469651 48.571 70 33 2 69 138 2 68 5.58e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0372240 AT5G48290.1 49.398 83 39 1 68 147 2 84 3.15e-17 75.5
Msa0372240 AT3G20180.2 47.059 85 43 1 68 150 21 105 3.20e-17 74.7
Msa0372240 AT3G07600.1 44.872 78 43 0 68 145 2 79 1.79e-16 73.2
Msa0372240 AT3G20180.3 45.882 85 44 1 68 150 2 86 3.32e-16 71.2
Msa0372240 AT3G20180.4 45.783 83 43 1 70 150 2 84 1.77e-15 69.3
Msa0372240 AT3G20180.1 46.250 80 41 1 73 150 3 82 3.66e-15 68.6
Msa0372240 AT5G48290.3 40.777 103 38 2 68 147 2 104 1.94e-13 65.9
Msa0372240 AT5G48290.2 48.649 74 35 1 77 147 1 74 2.81e-13 64.7
Msa0372240 AT1G55775.1 45.714 70 37 1 68 137 4 72 2.05e-12 62.0
Msa0372240 AT4G05030.2 43.056 72 41 0 69 140 3 74 3.38e-11 57.0
Msa0372240 AT4G05030.1 43.056 72 41 0 69 140 36 107 8.01e-11 57.0

Find 46 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGATTGCAGTTGGAGTTTC+AGG 0.157536 3_1:+70563470 Msa0372240:CDS
CGCTGTTTGGGTCGCAGTTT+GGG 0.240455 3_1:+70561171 Msa0372240:CDS
ACACAAGGCCATGCCATAAT+TGG 0.269055 3_1:-70563760 None:intergenic
TCAGCTTCTCCGTCGCTGTT+TGG 0.277697 3_1:+70561158 Msa0372240:CDS
CAGCTTCTCCGTCGCTGTTT+GGG 0.296816 3_1:+70561159 Msa0372240:CDS
AACTGCAATCTTCATGGCTT+TGG 0.309449 3_1:-70563459 None:intergenic
AAAGAAAGAAGAACCAATTA+TGG 0.328215 3_1:+70563747 Msa0372240:CDS
GTTGTGGGCTGTCGCGGTTC+TGG 0.329846 3_1:+70561261 Msa0372240:CDS
TCGCTGTTTGGGTCGCAGTT+TGG 0.343056 3_1:+70561170 Msa0372240:CDS
ATGGCATGGCCTTGTGTAAC+TGG 0.358016 3_1:+70563766 Msa0372240:CDS
AACTCCAACTGCAATCTTCA+TGG 0.358381 3_1:-70563465 None:intergenic
GAAATTCTGTCATGCAGAAT+TGG 0.360093 3_1:+70563693 Msa0372240:CDS
GCTGGTGGGTTTCTGCTGTT+TGG 0.360216 3_1:+70561289 Msa0372240:CDS
CGTCTGTTCGCCGGAGTTGT+GGG 0.382594 3_1:+70561246 Msa0372240:CDS
GGCTGTCGCGGTTCTGGTAC+AGG 0.391395 3_1:+70561267 Msa0372240:CDS
TCGTCTGTTCGCCGGAGTTG+TGG 0.418930 3_1:+70561245 Msa0372240:CDS
AAGGATCAAATAGAAGTAAT+CGG 0.441308 3_1:+70563628 Msa0372240:CDS
CTTATCTCACACACAGGGAC+AGG 0.478978 3_1:-70563802 None:intergenic
GCGGTTCTGGTACAGGCTGG+TGG 0.485122 3_1:+70561274 Msa0372240:CDS
CTGTCCCTGTGTGTGAGATA+AGG 0.485521 3_1:+70563803 Msa0372240:CDS
TCGTGGGTTCGTCTGTTCGC+CGG 0.485797 3_1:+70561237 Msa0372240:CDS
TGTCCCTGTGTGTGAGATAA+GGG 0.495058 3_1:+70563804 Msa0372240:CDS
ACCGCGACAGCCCACAACTC+CGG 0.502111 3_1:-70561256 None:intergenic
GTCGCGGTTCTGGTACAGGC+TGG 0.505093 3_1:+70561271 Msa0372240:CDS
CGGTTCTGGTACAGGCTGGT+GGG 0.511964 3_1:+70561275 Msa0372240:CDS
TCTTGATGACATTCACATGA+TGG 0.521926 3_1:-70563842 None:intergenic
GTGGAAAGTGCAGCAATACA+AGG 0.533044 3_1:+70563598 Msa0372240:CDS
GCAGCAAAAGATAGTGATCA+AGG 0.536634 3_1:+70563409 Msa0372240:intron
GCCGGAGTTGTGGGCTGTCG+CGG 0.539246 3_1:+70561255 Msa0372240:CDS
GTTTCAGTCCGATCTCAAGC+AGG 0.549864 3_1:+70561311 Msa0372240:CDS
CACACAGGGACAGGGTAATG+AGG 0.564551 3_1:-70563793 None:intergenic
TGAAGGCAACAGAGCAGCGG+AGG 0.572104 3_1:-70561138 None:intergenic
ACAACAAACCTGCTTGAGAT+CGG 0.577663 3_1:-70561319 None:intergenic
AAAGCCATGAAGATTGCAGT+TGG 0.583776 3_1:+70563461 Msa0372240:CDS
AACTGCGACCCAAACAGCGA+CGG 0.608636 3_1:-70561167 None:intergenic
AGCTGAAGGCAACAGAGCAG+CGG 0.614933 3_1:-70561141 None:intergenic
CATGCAGAATTGGTGAGTGT+TGG 0.620675 3_1:+70563703 Msa0372240:CDS
AGCAATACAAGGAGATAGCA+AGG 0.620845 3_1:+70563609 Msa0372240:CDS
AAGAAGAACCAATTATGGCA+TGG 0.625011 3_1:+70563752 Msa0372240:CDS
TGTTTGGGTCGCAGTTTGGG+TGG 0.626831 3_1:+70561174 Msa0372240:CDS
AACAGCGACGGAGAAGCTGA+AGG 0.634516 3_1:-70561155 None:intergenic
TCGTCCCTTATCTCACACAC+AGG 0.651929 3_1:-70563808 None:intergenic
TTATCTCACACACAGGGACA+GGG 0.661020 3_1:-70563801 None:intergenic
CGTCCCTTATCTCACACACA+GGG 0.689018 3_1:-70563807 None:intergenic
TGAGGATAACCAGTTACACA+AGG 0.713738 3_1:-70563775 None:intergenic
ACGAAGCTGAGCATAAAACA+CGG 0.743799 3_1:-70561218 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTAAA+CGG - chr3_1:70562634-70562653 None:intergenic 0.0%
!! ATAGTATATATATTGAATAA+AGG - chr3_1:70563037-70563056 None:intergenic 10.0%
!! ACTTATGAGATATAAATAAA+TGG - chr3_1:70562953-70562972 None:intergenic 15.0%
!! TTTATATCTCATAAGTATTA+TGG + chr3_1:70562957-70562976 Msa0372240:intron 15.0%
!!! TAATCCTTTTTTGAAATTTT+TGG - chr3_1:70563244-70563263 None:intergenic 15.0%
!! TAAAACAACAAACAAATCAA+TGG - chr3_1:70562086-70562105 None:intergenic 20.0%
!! TTTAATTAGTTGTAGGAAAT+TGG - chr3_1:70562711-70562730 None:intergenic 20.0%
!! GTATATATATTGAATAAAGG+AGG - chr3_1:70563034-70563053 None:intergenic 20.0%
!!! CATTTTTTATCATGCAACTT+TGG + chr3_1:70561517-70561536 Msa0372240:intron 25.0%
!!! GTATTTGTTTCTGATTGTTT+TGG + chr3_1:70561859-70561878 Msa0372240:intron 25.0%
!!! TTTGGTTGTTTTTTGTTTTG+AGG + chr3_1:70562385-70562404 Msa0372240:intron 25.0%
!!! TTGGTTGTTTTTTGTTTTGA+GGG + chr3_1:70562386-70562405 Msa0372240:intron 25.0%
! CAAGTTGTTTAATTAGTTGT+AGG - chr3_1:70562718-70562737 None:intergenic 25.0%
! ATTTACGTACAAAATACAAG+AGG + chr3_1:70562785-70562804 Msa0372240:intron 25.0%
!! CATGCATTTTACGTATTTAT+AGG - chr3_1:70562864-70562883 None:intergenic 25.0%
! TGGTGTATTATTAAAGTTGT+AGG - chr3_1:70562905-70562924 None:intergenic 25.0%
! ACTTTAATAATACACCATTC+CGG + chr3_1:70562908-70562927 Msa0372240:intron 25.0%
! TCCACCAAAAATTTCAAAAA+AGG + chr3_1:70563237-70563256 Msa0372240:intron 25.0%
!!! TCCTTTTTTGAAATTTTTGG+TGG - chr3_1:70563241-70563260 None:intergenic 25.0%
! TAGTTTGGATAATTAAGCTA+TGG - chr3_1:70563555-70563574 None:intergenic 25.0%
!!! ATTTTTGGACATGATTAGTT+TGG - chr3_1:70563570-70563589 None:intergenic 25.0%
! AATCATGTCCAAAAATATTC+AGG + chr3_1:70563574-70563593 Msa0372240:intron 25.0%
! AAGGATCAAATAGAAGTAAT+CGG + chr3_1:70563628-70563647 Msa0372240:CDS 25.0%
! AAAGAAAGAAGAACCAATTA+TGG + chr3_1:70563747-70563766 Msa0372240:CDS 25.0%
! TTTTTATCATGCAACTTTGG+AGG + chr3_1:70561520-70561539 Msa0372240:intron 30.0%
!!! ACTTTTTGTATGCTGGTTTT+CGG + chr3_1:70562133-70562152 Msa0372240:intron 30.0%
! GGCTTGATTTGAATAAATGA+CGG + chr3_1:70562654-70562673 Msa0372240:intron 30.0%
! TTATAGGCATTAGTTCTTTG+TGG - chr3_1:70562848-70562867 None:intergenic 30.0%
!! ATTAGAAGAAGCTTTGTTTC+CGG - chr3_1:70562930-70562949 None:intergenic 30.0%
TCTCATAAGTATTATGGCTA+AGG + chr3_1:70562963-70562982 Msa0372240:intron 30.0%
!!! TCACACTACTTTTTTTTAGC+AGG - chr3_1:70563006-70563025 None:intergenic 30.0%
TATATTGAATAAAGGAGGTC+AGG - chr3_1:70563029-70563048 None:intergenic 30.0%
! TTTCCACTCCTGAATATTTT+TGG - chr3_1:70563585-70563604 None:intergenic 30.0%
!!! TGTGTTGTTTCGTGTTGTTT+TGG + chr3_1:70561487-70561506 Msa0372240:intron 35.0%
!!! AGGTTTAGTGGTGGTTTTAA+CGG + chr3_1:70561540-70561559 Msa0372240:intron 35.0%
CAATGAAGGAGGATTAATCA+TGG - chr3_1:70561772-70561791 None:intergenic 35.0%
CCTTACAACAAAAAACGATC+CGG - chr3_1:70561800-70561819 None:intergenic 35.0%
!!! GTTTTTTGTTGTAAGGATCG+TGG + chr3_1:70561804-70561823 Msa0372240:intron 35.0%
!! ATTTGCTCTCTGTTTTGTTG+TGG + chr3_1:70562001-70562020 Msa0372240:intron 35.0%
!! TTTGCTCTCTGTTTTGTTGT+GGG + chr3_1:70562002-70562021 Msa0372240:intron 35.0%
AAAAAGTCAGACAAGAGACA+TGG - chr3_1:70562120-70562139 None:intergenic 35.0%
! TTGTCTGACTTTTTGTATGC+TGG + chr3_1:70562126-70562145 Msa0372240:intron 35.0%
!! AATTTGTGCTTGACTTGGTT+TGG + chr3_1:70562203-70562222 Msa0372240:intron 35.0%
! TGGTTTTTCTCTAGTGTACT+AGG + chr3_1:70562223-70562242 Msa0372240:intron 35.0%
! GGTTTTTCTCTAGTGTACTA+GGG + chr3_1:70562224-70562243 Msa0372240:intron 35.0%
! GTTTTTCTCTAGTGTACTAG+GGG + chr3_1:70562225-70562244 Msa0372240:intron 35.0%
!! TTTTGAGGGTGATCTTGTTT+GGG + chr3_1:70562400-70562419 Msa0372240:intron 35.0%
!!! TTACAATGGTGGAGGTTTTT+TGG + chr3_1:70562458-70562477 Msa0372240:intron 35.0%
!!! GGTTTTTTGGAGGTTGTTTT+AGG + chr3_1:70562471-70562490 Msa0372240:intron 35.0%
!!! TTTTTGGAGGTTGTTTTAGG+TGG + chr3_1:70562474-70562493 Msa0372240:intron 35.0%
TATGATGTTCCGTCTATATG+CGG + chr3_1:70562543-70562562 Msa0372240:intron 35.0%
GCACGAAAGTAAGATACAAA+TGG - chr3_1:70562571-70562590 None:intergenic 35.0%
TGTTTCTTTGAGTCAATGCA+TGG - chr3_1:70562744-70562763 None:intergenic 35.0%
ATCCTTTGCTTGAAATTGAG+AGG + chr3_1:70563115-70563134 Msa0372240:intron 35.0%
TCCTTTGCTTGAAATTGAGA+GGG + chr3_1:70563116-70563135 Msa0372240:intron 35.0%
TTGAAATTGAGAGGGAAAGA+GGG + chr3_1:70563124-70563143 Msa0372240:intron 35.0%
! ATGACTTGATTAGCTAGAGT+TGG + chr3_1:70563311-70563330 Msa0372240:intron 35.0%
TGTCCAAAAATATTCAGGAG+TGG + chr3_1:70563579-70563598 Msa0372240:intron 35.0%
!! TAGCAGTTTTGTGAGTCTAA+CGG - chr3_1:70563668-70563687 None:intergenic 35.0%
GAAATTCTGTCATGCAGAAT+TGG + chr3_1:70563693-70563712 Msa0372240:CDS 35.0%
TGGTGAAGTGAAAAAGAAAG+AGG + chr3_1:70563723-70563742 Msa0372240:CDS 35.0%
AAGAAGAACCAATTATGGCA+TGG + chr3_1:70563752-70563771 Msa0372240:CDS 35.0%
!!! TGGGTGGCTGTTTTTATGTT+TGG + chr3_1:70561190-70561209 Msa0372240:CDS 40.0%
!!! GGGTGGCTGTTTTTATGTTT+GGG + chr3_1:70561191-70561210 Msa0372240:CDS 40.0%
ACGAAGCTGAGCATAAAACA+CGG - chr3_1:70561221-70561240 None:intergenic 40.0%
! TGTTTTATGCTCAGCTTCGT+GGG + chr3_1:70561221-70561240 Msa0372240:CDS 40.0%
ACAACAAACCTGCTTGAGAT+CGG - chr3_1:70561322-70561341 None:intergenic 40.0%
!!! GTTCTACTGCAGTTGCTTTT+TGG + chr3_1:70561340-70561359 Msa0372240:intron 40.0%
AAACAGACAACACCACGTAA+AGG - chr3_1:70561397-70561416 None:intergenic 40.0%
!! TTTACGTGGTGTTGTCTGTT+TGG + chr3_1:70561396-70561415 Msa0372240:intron 40.0%
! TTTGTGTCGTTGTTATTCGC+CGG + chr3_1:70561419-70561438 Msa0372240:intron 40.0%
! ATGCAACTTTGGAGGTTTAG+TGG + chr3_1:70561528-70561547 Msa0372240:intron 40.0%
!!! TTTTTTGGTGGTGGTGTAAG+TGG + chr3_1:70561579-70561598 Msa0372240:intron 40.0%
! TTATGTGTGGTGCTGAACTT+TGG + chr3_1:70561703-70561722 Msa0372240:intron 40.0%
! TATGTGTGGTGCTGAACTTT+GGG + chr3_1:70561704-70561723 Msa0372240:intron 40.0%
ATCCTCCTTCATTGAACTTC+CGG + chr3_1:70561778-70561797 Msa0372240:intron 40.0%
!!! CCGGATCGTTTTTTGTTGTA+AGG + chr3_1:70561797-70561816 Msa0372240:intron 40.0%
!! TTTTGTTGTAAGGATCGTGG+TGG + chr3_1:70561807-70561826 Msa0372240:intron 40.0%
! TTTGTTGTAAGGATCGTGGT+GGG + chr3_1:70561808-70561827 Msa0372240:intron 40.0%
AGAGCAAATGACGACAATCA+TGG - chr3_1:70561990-70562009 None:intergenic 40.0%
!! TGTTTTGTTGTGGGTGGTTT+AGG + chr3_1:70562011-70562030 Msa0372240:intron 40.0%
! GTTTAGGTGTCTAGGATGTT+TGG + chr3_1:70562027-70562046 Msa0372240:intron 40.0%
!!! TTTTGTATGCTGGTTTTCGG+TGG + chr3_1:70562136-70562155 Msa0372240:intron 40.0%
!!! TTTGTATGCTGGTTTTCGGT+GGG + chr3_1:70562137-70562156 Msa0372240:intron 40.0%
CAAAGCCCAAAAAACCAACA+TGG - chr3_1:70562265-70562284 None:intergenic 40.0%
! TTTGTGTTGTGCTCTTTTGG+TGG + chr3_1:70562281-70562300 Msa0372240:intron 40.0%
TGAGATAGCTGCTTGATCTT+CGG + chr3_1:70562322-70562341 Msa0372240:intron 40.0%
!!! GTTTTGAGGGTGATCTTGTT+TGG + chr3_1:70562399-70562418 Msa0372240:intron 40.0%
!! TTTTAGGTGGTGAGGTGTTT+TGG + chr3_1:70562487-70562506 Msa0372240:intron 40.0%
!!! TTTTGGAGCGTTTATCTCCA+GGG + chr3_1:70562504-70562523 Msa0372240:intron 40.0%
!!! ATCTCCAGGGGTGTTTTTAA+AGG + chr3_1:70562517-70562536 Msa0372240:intron 40.0%
!!! TCTCCAGGGGTGTTTTTAAA+GGG + chr3_1:70562518-70562537 Msa0372240:intron 40.0%
!! AAGAAGCTTTGTTTCCGGAA+TGG - chr3_1:70562925-70562944 None:intergenic 40.0%
TCCCTCTCAATTTCAAGCAA+AGG - chr3_1:70563120-70563139 None:intergenic 40.0%
CTTGAAATTGAGAGGGAAAG+AGG + chr3_1:70563123-70563142 Msa0372240:intron 40.0%
GCAGCAAAAGATAGTGATCA+AGG + chr3_1:70563409-70563428 Msa0372240:intron 40.0%
CAATGCACAGCCAAAAATCA+AGG + chr3_1:70563435-70563454 Msa0372240:CDS 40.0%
!!! TGGCTTTGGACCTTGATTTT+TGG - chr3_1:70563448-70563467 None:intergenic 40.0%
AACTGCAATCTTCATGGCTT+TGG - chr3_1:70563462-70563481 None:intergenic 40.0%
AAAGCCATGAAGATTGCAGT+TGG + chr3_1:70563461-70563480 Msa0372240:CDS 40.0%
AACTCCAACTGCAATCTTCA+TGG - chr3_1:70563468-70563487 None:intergenic 40.0%
AAGATTGCAGTTGGAGTTTC+AGG + chr3_1:70563470-70563489 Msa0372240:CDS 40.0%
AGCAATACAAGGAGATAGCA+AGG + chr3_1:70563609-70563628 Msa0372240:CDS 40.0%
TGAGGATAACCAGTTACACA+AGG - chr3_1:70563778-70563797 None:intergenic 40.0%
! GTGTTTTATGCTCAGCTTCG+TGG + chr3_1:70561220-70561239 Msa0372240:CDS 45.0%
!!! AGTTGCTTTTTGGTGCTGCT+TGG + chr3_1:70561350-70561369 Msa0372240:intron 45.0%
! CAACTTTGGAGGTTTAGTGG+TGG + chr3_1:70561531-70561550 Msa0372240:intron 45.0%
! TTTTAACGGAGTGTGGTAGC+CGG + chr3_1:70561554-70561573 Msa0372240:intron 45.0%
ACACCACCACCAAAAAAACC+CGG - chr3_1:70561576-70561595 None:intergenic 45.0%
!!! CGGTTTTTGGTGGTTACTTG+CGG + chr3_1:70561602-70561621 Msa0372240:intron 45.0%
! TGCGGTTGAGAGGTTTGTTT+AGG + chr3_1:70561620-70561639 Msa0372240:intron 45.0%
! GCGGTTGAGAGGTTTGTTTA+GGG + chr3_1:70561621-70561640 Msa0372240:intron 45.0%
! CGGTTGAGAGGTTTGTTTAG+GGG + chr3_1:70561622-70561641 Msa0372240:intron 45.0%
! GGTTGAGAGGTTTGTTTAGG+GGG + chr3_1:70561623-70561642 Msa0372240:intron 45.0%
! ATGTGTGGTGCTGAACTTTG+GGG + chr3_1:70561705-70561724 Msa0372240:intron 45.0%
GGTACGATTCTAGCGACTAT+AGG + chr3_1:70561726-70561745 Msa0372240:intron 45.0%
GATTCTAGCGACTATAGGTG+TGG + chr3_1:70561731-70561750 Msa0372240:intron 45.0%
ATCCGGAAGTTCAATGAAGG+AGG - chr3_1:70561783-70561802 None:intergenic 45.0%
ACGATCCGGAAGTTCAATGA+AGG - chr3_1:70561786-70561805 None:intergenic 45.0%
CTTGTTGGGGTGGTTATTCT+TGG + chr3_1:70561942-70561961 Msa0372240:intron 45.0%
!! TGGAGTCAGTTGTTGTTTCG+TGG + chr3_1:70561962-70561981 Msa0372240:intron 45.0%
!! GGAGTCAGTTGTTGTTTCGT+GGG + chr3_1:70561963-70561982 Msa0372240:intron 45.0%
! TAGGTGTCTAGGATGTTTGG+AGG + chr3_1:70562030-70562049 Msa0372240:intron 45.0%
! AGGTGTCTAGGATGTTTGGA+GGG + chr3_1:70562031-70562050 Msa0372240:intron 45.0%
GATCTCGAAGCCAAATGAAC+CGG - chr3_1:70562163-70562182 None:intergenic 45.0%
! GGTTCATTTGGCTTCGAGAT+CGG + chr3_1:70562162-70562181 Msa0372240:intron 45.0%
! GTTCATTTGGCTTCGAGATC+GGG + chr3_1:70562163-70562182 Msa0372240:intron 45.0%
GCTGCAATTTGTGCTTGACT+TGG + chr3_1:70562198-70562217 Msa0372240:intron 45.0%
TCTAGTGTACTAGGGGCTTA+GGG + chr3_1:70562232-70562251 Msa0372240:intron 45.0%
CCCAAAAAACCAACATGGCA+GGG - chr3_1:70562260-70562279 None:intergenic 45.0%
!!! CCCTGCCATGTTGGTTTTTT+GGG + chr3_1:70562257-70562276 Msa0372240:intron 45.0%
!! GGCTTTGTGTTGTGCTCTTT+TGG + chr3_1:70562278-70562297 Msa0372240:intron 45.0%
TAGCTGCTTGATCTTCGGTT+AGG + chr3_1:70562327-70562346 Msa0372240:intron 45.0%
GTTAGGTGCTCTTCGAATTG+TGG + chr3_1:70562344-70562363 Msa0372240:intron 45.0%
GGTGGATCCTGTGTTTACAA+TGG + chr3_1:70562444-70562463 Msa0372240:intron 45.0%
GGATCCTGTGTTTACAATGG+TGG + chr3_1:70562447-70562466 Msa0372240:intron 45.0%
TCCTGTGTTTACAATGGTGG+AGG + chr3_1:70562450-70562469 Msa0372240:intron 45.0%
ACCTCCACCATTGTAAACAC+AGG - chr3_1:70562454-70562473 None:intergenic 45.0%
!!! CAATGGTGGAGGTTTTTTGG+AGG + chr3_1:70562461-70562480 Msa0372240:intron 45.0%
!!! GTTTTGGAGCGTTTATCTCC+AGG + chr3_1:70562503-70562522 Msa0372240:intron 45.0%
! TTTGGAGCGTTTATCTCCAG+GGG + chr3_1:70562505-70562524 Msa0372240:intron 45.0%
!!! CTCCAGGGGTGTTTTTAAAG+GGG + chr3_1:70562519-70562538 Msa0372240:intron 45.0%
! AACCCCTTTAAAAACACCCC+TGG - chr3_1:70562524-70562543 None:intergenic 45.0%
!! CAAATGGTGCCGCATATAGA+CGG - chr3_1:70562555-70562574 None:intergenic 45.0%
! GTGGAAAGTGCAGCAATACA+AGG + chr3_1:70563598-70563617 Msa0372240:CDS 45.0%
CATGCAGAATTGGTGAGTGT+TGG + chr3_1:70563703-70563722 Msa0372240:CDS 45.0%
ACACAAGGCCATGCCATAAT+TGG - chr3_1:70563763-70563782 None:intergenic 45.0%
TTATCTCACACACAGGGACA+GGG - chr3_1:70563804-70563823 None:intergenic 45.0%
TGTCCCTGTGTGTGAGATAA+GGG + chr3_1:70563804-70563823 Msa0372240:CDS 45.0%
!! GTTTAAAAAAAAAAAAAAAA+AGG + chr3_1:70562633-70562652 Msa0372240:intron 5.0%
!! TTTGAATTAAAAATAATTAA+TGG - chr3_1:70563520-70563539 None:intergenic 5.0%
GTTTCAGTCCGATCTCAAGC+AGG + chr3_1:70561311-70561330 Msa0372240:CDS 50.0%
AACAACACCAACCACACCTC+CGG - chr3_1:70561441-70561460 None:intergenic 50.0%
!!! GTGGTGGTTTTAACGGAGTG+TGG + chr3_1:70561547-70561566 Msa0372240:intron 50.0%
TTTAACGGAGTGTGGTAGCC+GGG + chr3_1:70561555-70561574 Msa0372240:intron 50.0%
!!! GTGTGGTAGCCGGGTTTTTT+TGG + chr3_1:70561564-70561583 Msa0372240:intron 50.0%
!!! TGGTAGCCGGGTTTTTTTGG+TGG + chr3_1:70561567-70561586 Msa0372240:intron 50.0%
!!! TAGCCGGGTTTTTTTGGTGG+TGG + chr3_1:70561570-70561589 Msa0372240:intron 50.0%
!! TTTGGTGGTGGTGTAAGTGG+CGG + chr3_1:70561582-70561601 Msa0372240:intron 50.0%
! GTGGTGTAAGTGGCGGTTTT+TGG + chr3_1:70561589-70561608 Msa0372240:intron 50.0%
!! GTGTAAGTGGCGGTTTTTGG+TGG + chr3_1:70561592-70561611 Msa0372240:intron 50.0%
! GAGGTTTGTTTAGGGGGTGA+CGG + chr3_1:70561629-70561648 Msa0372240:intron 50.0%
!!! TGACGGACTTTTGACGCGAA+GGG + chr3_1:70561679-70561698 Msa0372240:intron 50.0%
TGACGCGAAGGGATTATGTG+TGG + chr3_1:70561690-70561709 Msa0372240:intron 50.0%
ACTGGTGTGTCTGTCTAGTG+AGG + chr3_1:70561904-70561923 Msa0372240:intron 50.0%
!! GCTCTCTGTTTTGTTGTGGG+TGG + chr3_1:70562005-70562024 Msa0372240:intron 50.0%
TGTGGGTGGTTTAGGTGTCT+AGG + chr3_1:70562019-70562038 Msa0372240:intron 50.0%
CTCTAGTGTACTAGGGGCTT+AGG + chr3_1:70562231-70562250 Msa0372240:intron 50.0%
!!! GCCCTGCCATGTTGGTTTTT+TGG + chr3_1:70562256-70562275 Msa0372240:intron 50.0%
GCCCAAAAAACCAACATGGC+AGG - chr3_1:70562261-70562280 None:intergenic 50.0%
!! GTGCTCTTTTGGTGGATCAG+AGG + chr3_1:70562289-70562308 Msa0372240:intron 50.0%
TCTTCGAATTGTGGCTCGAC+TGG + chr3_1:70562353-70562372 Msa0372240:intron 50.0%
CTTCGAATTGTGGCTCGACT+GGG + chr3_1:70562354-70562373 Msa0372240:intron 50.0%
! GGGTGAGTAGTGATGATGAG+CGG + chr3_1:70562420-70562439 Msa0372240:intron 50.0%
! TGAGTAGTGATGATGAGCGG+TGG + chr3_1:70562423-70562442 Msa0372240:intron 50.0%
!!! GGAGGTTGTTTTAGGTGGTG+AGG + chr3_1:70562479-70562498 Msa0372240:intron 50.0%
!! ATGGCATGGCCTTGTGTAAC+TGG + chr3_1:70563766-70563785 Msa0372240:CDS 50.0%
CTTATCTCACACACAGGGAC+AGG - chr3_1:70563805-70563824 None:intergenic 50.0%
CTGTCCCTGTGTGTGAGATA+AGG + chr3_1:70563803-70563822 Msa0372240:CDS 50.0%
CGTCCCTTATCTCACACACA+GGG - chr3_1:70563810-70563829 None:intergenic 50.0%
TCGTCCCTTATCTCACACAC+AGG - chr3_1:70563811-70563830 None:intergenic 50.0%
AGCTGAAGGCAACAGAGCAG+CGG - chr3_1:70561144-70561163 None:intergenic 55.0%
AACAGCGACGGAGAAGCTGA+AGG - chr3_1:70561158-70561177 None:intergenic 55.0%
TCAGCTTCTCCGTCGCTGTT+TGG + chr3_1:70561158-70561177 Msa0372240:CDS 55.0%
CAGCTTCTCCGTCGCTGTTT+GGG + chr3_1:70561159-70561178 Msa0372240:CDS 55.0%
AACTGCGACCCAAACAGCGA+CGG - chr3_1:70561170-70561189 None:intergenic 55.0%
TCGCTGTTTGGGTCGCAGTT+TGG + chr3_1:70561170-70561189 Msa0372240:CDS 55.0%
CGCTGTTTGGGTCGCAGTTT+GGG + chr3_1:70561171-70561190 Msa0372240:CDS 55.0%
TGTTTGGGTCGCAGTTTGGG+TGG + chr3_1:70561174-70561193 Msa0372240:CDS 55.0%
!! GCTGGTGGGTTTCTGCTGTT+TGG + chr3_1:70561289-70561308 Msa0372240:CDS 55.0%
!! GTGCTGCTTGGCCTGTGTTT+AGG + chr3_1:70561362-70561381 Msa0372240:intron 55.0%
CTGCTTGGCCTGTGTTTAGG+AGG + chr3_1:70561365-70561384 Msa0372240:intron 55.0%
GGTGCAGACCTCCTAAACAC+AGG - chr3_1:70561376-70561395 None:intergenic 55.0%
AGGAGGTCTGCACCTTTACG+TGG + chr3_1:70561382-70561401 Msa0372240:intron 55.0%
! GTGTCGTTGTTATTCGCCGG+AGG + chr3_1:70561422-70561441 Msa0372240:intron 55.0%
! GTTGTTATTCGCCGGAGGTG+TGG + chr3_1:70561427-70561446 Msa0372240:intron 55.0%
! TTATTCGCCGGAGGTGTGGT+TGG + chr3_1:70561431-70561450 Msa0372240:intron 55.0%
GGTGGTTACTTGCGGTTGAG+AGG + chr3_1:70561610-70561629 Msa0372240:intron 55.0%
! GTTTGTTTAGGGGGTGACGG+TGG + chr3_1:70561632-70561651 Msa0372240:intron 55.0%
! GGTAGGAGTGTAGGTGGTGA+CGG + chr3_1:70561662-70561681 Msa0372240:intron 55.0%
!!! GTGACGGACTTTTGACGCGA+AGG + chr3_1:70561678-70561697 Msa0372240:intron 55.0%
!! TGTAAGGATCGTGGTGGGTG+AGG + chr3_1:70561813-70561832 Msa0372240:intron 55.0%
!! TTTGGTGTCAGACACCCCTC+CGG + chr3_1:70561877-70561896 Msa0372240:intron 55.0%
GACAGACACACCAGTGAACC+CGG - chr3_1:70561899-70561918 None:intergenic 55.0%
GGTGTGTCTGTCTAGTGAGG+TGG + chr3_1:70561907-70561926 Msa0372240:intron 55.0%
GTGTCTGTCTAGTGAGGTGG+TGG + chr3_1:70561910-70561929 Msa0372240:intron 55.0%
!! GTCTAGTGAGGTGGTGGAGT+CGG + chr3_1:70561916-70561935 Msa0372240:intron 55.0%
!! TCTAGTGAGGTGGTGGAGTC+GGG + chr3_1:70561917-70561936 Msa0372240:intron 55.0%
!!! TATGCTGGTTTTCGGTGGGC+CGG + chr3_1:70562141-70562160 Msa0372240:intron 55.0%
! TTTCGGTGGGCCGGTTCATT+TGG + chr3_1:70562150-70562169 Msa0372240:intron 55.0%
TTGGCTTCGAGATCGGGAGT+CGG + chr3_1:70562169-70562188 Msa0372240:intron 55.0%
ATTGTGGCTCGACTGGGAGT+TGG + chr3_1:70562360-70562379 Msa0372240:intron 55.0%
TTGTGGCTCGACTGGGAGTT+GGG + chr3_1:70562361-70562380 Msa0372240:intron 55.0%
CTCGACTGGGAGTTGGGATT+TGG + chr3_1:70562367-70562386 Msa0372240:intron 55.0%
! GTAGTGATGATGAGCGGTGG+TGG + chr3_1:70562426-70562445 Msa0372240:intron 55.0%
CACACAGGGACAGGGTAATG+AGG - chr3_1:70563796-70563815 None:intergenic 55.0%
TGAAGGCAACAGAGCAGCGG+AGG - chr3_1:70561141-70561160 None:intergenic 60.0%
TCGTGGGTTCGTCTGTTCGC+CGG + chr3_1:70561237-70561256 Msa0372240:CDS 60.0%
TCGTCTGTTCGCCGGAGTTG+TGG + chr3_1:70561245-70561264 Msa0372240:CDS 60.0%
CGTCTGTTCGCCGGAGTTGT+GGG + chr3_1:70561246-70561265 Msa0372240:CDS 60.0%
! CGGTTCTGGTACAGGCTGGT+GGG + chr3_1:70561275-70561294 Msa0372240:CDS 60.0%
! TGTTTAGGGGGTGACGGTGG+TGG + chr3_1:70561635-70561654 Msa0372240:intron 60.0%
! GGTGGCTTCGGTAGGAGTGT+AGG + chr3_1:70561653-70561672 Msa0372240:intron 60.0%
! GGCTTCGGTAGGAGTGTAGG+TGG + chr3_1:70561656-70561675 Msa0372240:intron 60.0%
GTGGGTGAGGTTGTTCGCGT+CGG + chr3_1:70561826-70561845 Msa0372240:intron 60.0%
!! TTGGTGTCAGACACCCCTCC+GGG + chr3_1:70561878-70561897 Msa0372240:intron 60.0%
ACACACCAGTGAACCCGGAG+GGG - chr3_1:70561894-70561913 None:intergenic 60.0%
GACACACCAGTGAACCCGGA+GGG - chr3_1:70561895-70561914 None:intergenic 60.0%
AGACACACCAGTGAACCCGG+AGG - chr3_1:70561896-70561915 None:intergenic 60.0%
TGGTGGAGTCGGGTGCTTGT+TGG + chr3_1:70561927-70561946 Msa0372240:intron 60.0%
GGTGGAGTCGGGTGCTTGTT+GGG + chr3_1:70561928-70561947 Msa0372240:intron 60.0%
! GTGGAGTCGGGTGCTTGTTG+GGG + chr3_1:70561929-70561948 Msa0372240:intron 60.0%
TGGCTTCGAGATCGGGAGTC+GGG + chr3_1:70562170-70562189 Msa0372240:intron 60.0%
! CTTAGGGTGCCCTGCCATGT+TGG + chr3_1:70562248-70562267 Msa0372240:intron 60.0%
! TTGGTGGATCAGAGGTCGCG+AGG + chr3_1:70562297-70562316 Msa0372240:intron 60.0%
CGTGCACTCCTTGCGTCTTG+CGG + chr3_1:70562586-70562605 Msa0372240:intron 60.0%
GTGCACTCCTTGCGTCTTGC+GGG + chr3_1:70562587-70562606 Msa0372240:intron 60.0%
TGCACTCCTTGCGTCTTGCG+GGG + chr3_1:70562588-70562607 Msa0372240:intron 60.0%
CATCATCCCCGCAAGACGCA+AGG - chr3_1:70562597-70562616 None:intergenic 60.0%
ACCGCGACAGCCCACAACTC+CGG - chr3_1:70561259-70561278 None:intergenic 65.0%
! GTTGTGGGCTGTCGCGGTTC+TGG + chr3_1:70561261-70561280 Msa0372240:CDS 65.0%
! GGCTGTCGCGGTTCTGGTAC+AGG + chr3_1:70561267-70561286 Msa0372240:CDS 65.0%
! GTCGCGGTTCTGGTACAGGC+TGG + chr3_1:70561271-70561290 Msa0372240:CDS 65.0%
! GCGGTTCTGGTACAGGCTGG+TGG + chr3_1:70561274-70561293 Msa0372240:CDS 65.0%
! GTGACGGTGGTGGCTTCGGT+AGG + chr3_1:70561645-70561664 Msa0372240:intron 65.0%
GGTGAGGTTGTTCGCGTCGG+TGG + chr3_1:70561829-70561848 Msa0372240:intron 65.0%
AGACACCCCTCCGGGTTCAC+TGG + chr3_1:70561886-70561905 Msa0372240:intron 65.0%
! GAGTCGGGTGCTTGTTGGGG+TGG + chr3_1:70561932-70561951 Msa0372240:intron 65.0%
GGCTTCGAGATCGGGAGTCG+GGG + chr3_1:70562171-70562190 Msa0372240:intron 65.0%
! GCCGGAGTTGTGGGCTGTCG+CGG + chr3_1:70561255-70561274 Msa0372240:CDS 70.0%
! GGGGGTGACGGTGGTGGCTT+CGG + chr3_1:70561641-70561660 Msa0372240:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 70561129 70563849 70561129 ID=Msa0372240;Name=Msa0372240
chr3_1 mRNA 70561129 70563849 70561129 ID=Msa0372240-mRNA-1;Parent=Msa0372240;Name=Msa0372240-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0.5|0.33|0.66|0.5|0.66|3|0|179
chr3_1 exon 70561129 70561332 70561129 ID=Msa0372240-mRNA-1:exon:15362;Parent=Msa0372240-mRNA-1
chr3_1 exon 70563413 70563491 70563413 ID=Msa0372240-mRNA-1:exon:15363;Parent=Msa0372240-mRNA-1
chr3_1 exon 70563596 70563849 70563596 ID=Msa0372240-mRNA-1:exon:15364;Parent=Msa0372240-mRNA-1
chr3_1 CDS 70561129 70561332 70561129 ID=Msa0372240-mRNA-1:cds;Parent=Msa0372240-mRNA-1
chr3_1 CDS 70563413 70563491 70563413 ID=Msa0372240-mRNA-1:cds;Parent=Msa0372240-mRNA-1
chr3_1 CDS 70563596 70563849 70563596 ID=Msa0372240-mRNA-1:cds;Parent=Msa0372240-mRNA-1
Gene Sequence

>Msa0372240

TCTCGTTGTCCTCCGCTGCTCTGTTGCCTTCAGCTTCTCCGTCGCTGTTTGGGTCGCAGTTTGGGTGGCTGTTTTTATGTTTGGGTTGTCCGTGTTTTATGCTCAGCTTCGTGGGTTCGTCTGTTCGCCGGAGTTGTGGGCTGTCGCGGTTCTGGTACAGGCTGGTGGGTTTCTGCTGTTTGGTTTCAGTCCGATCTCAAGCAGCAAAAGATAGTGATCAAGGTGTCAATGCACAGCCAAAAATCAAGGTCCAAAGCCATGAAGATTGCAGTTGGAGTTTCAGGAGTGGAAAGTGCAGCAATACAAGGAGATAGCAAGGATCAAATAGAAGTAATCGGAGAACAAATAGACTCCGTTAGACTCACAAAACTGCTAAGAAAGAAATTCTGTCATGCAGAATTGGTGAGTGTTGGTGAAGTGAAAAAGAAAGAGGAAAAGAAAGAAGAACCAATTATGGCATGGCCTTGTGTAACTGGTTATCCTCATTACCCTGTCCCTGTGTGTGAGATAAGGGACGACTCTTCTTGTTCCATCATG

Protein sequence

>Msa0372240

SRCPPLLCCLQLLRRCLGRSLGGCFYVWVVRVLCSASWVRLFAGVVGCRGSGTGWWVSAVWFQSDLKQQKIVIKVSMHSQKSRSKAMKIAVGVSGVESAAIQGDSKDQIEVIGEQIDSVRLTKLLRKKFCHAELVSVGEVKKKEEKKEEPIMAWPCVTGYPHYPVPVCEIRDDSSCSIM