Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0372240 | XP_003601487.3 | 83.478 | 115 | 18 | 1 | 66 | 179 | 1 | 115 | 7.00e-51 | 169 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0372240 | sp|Q5PNZ7|HIP46_ARATH | 49.398 | 83 | 39 | 1 | 68 | 147 | 2 | 84 | 3.10e-16 | 75.5 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0372240 | A0A396J1F2 | 83.478 | 115 | 18 | 1 | 66 | 179 | 1 | 115 | 3.34e-51 | 169 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0033340 | Msa0372240 | 0.809877 | 1.522541e-50 | -8.615850e-47 |
Msa0372240 | Msa0420760 | 0.802892 | 4.522085e-49 | -8.615850e-47 |
Msa0372240 | Msa0512420 | 0.842469 | 2.536965e-58 | -8.615850e-47 |
Msa0372240 | Msa0580610 | 0.821240 | 4.486319e-53 | -8.615850e-47 |
Msa0372240 | Msa0818010 | 0.801143 | 1.034543e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0372240 | MtrunA17_Chr3g0120531 | 83.478 | 115 | 18 | 1 | 66 | 179 | 1 | 115 | 6.44e-55 | 169 |
Msa0372240 | MtrunA17_Chr3g0120541 | 69.748 | 119 | 27 | 3 | 66 | 179 | 1 | 115 | 9.38e-47 | 149 |
Msa0372240 | MtrunA17_Chr3g0120551 | 57.983 | 119 | 43 | 3 | 66 | 179 | 1 | 117 | 4.38e-36 | 122 |
Msa0372240 | MtrunA17_Chr2g0290831 | 51.351 | 74 | 36 | 0 | 68 | 141 | 2 | 75 | 8.07e-19 | 76.6 |
Msa0372240 | MtrunA17_Chr5g0438551 | 43.609 | 133 | 51 | 5 | 69 | 178 | 2 | 133 | 8.28e-19 | 78.2 |
Msa0372240 | MtrunA17_Chr6g0483521 | 50.000 | 62 | 31 | 0 | 68 | 129 | 2 | 63 | 4.12e-15 | 70.5 |
Msa0372240 | MtrunA17_Chr6g0483511 | 44.286 | 70 | 39 | 0 | 68 | 137 | 2 | 71 | 4.44e-14 | 67.0 |
Msa0372240 | MtrunA17_Chr6g0483581 | 45.205 | 73 | 40 | 0 | 68 | 140 | 2 | 74 | 9.45e-14 | 67.0 |
Msa0372240 | MtrunA17_Chr6g0483561 | 44.444 | 72 | 40 | 0 | 68 | 139 | 2 | 73 | 9.50e-13 | 64.3 |
Msa0372240 | MtrunA17_Chr6g0469651 | 48.571 | 70 | 33 | 2 | 69 | 138 | 2 | 68 | 5.58e-11 | 57.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0372240 | AT5G48290.1 | 49.398 | 83 | 39 | 1 | 68 | 147 | 2 | 84 | 3.15e-17 | 75.5 |
Msa0372240 | AT3G20180.2 | 47.059 | 85 | 43 | 1 | 68 | 150 | 21 | 105 | 3.20e-17 | 74.7 |
Msa0372240 | AT3G07600.1 | 44.872 | 78 | 43 | 0 | 68 | 145 | 2 | 79 | 1.79e-16 | 73.2 |
Msa0372240 | AT3G20180.3 | 45.882 | 85 | 44 | 1 | 68 | 150 | 2 | 86 | 3.32e-16 | 71.2 |
Msa0372240 | AT3G20180.4 | 45.783 | 83 | 43 | 1 | 70 | 150 | 2 | 84 | 1.77e-15 | 69.3 |
Msa0372240 | AT3G20180.1 | 46.250 | 80 | 41 | 1 | 73 | 150 | 3 | 82 | 3.66e-15 | 68.6 |
Msa0372240 | AT5G48290.3 | 40.777 | 103 | 38 | 2 | 68 | 147 | 2 | 104 | 1.94e-13 | 65.9 |
Msa0372240 | AT5G48290.2 | 48.649 | 74 | 35 | 1 | 77 | 147 | 1 | 74 | 2.81e-13 | 64.7 |
Msa0372240 | AT1G55775.1 | 45.714 | 70 | 37 | 1 | 68 | 137 | 4 | 72 | 2.05e-12 | 62.0 |
Msa0372240 | AT4G05030.2 | 43.056 | 72 | 41 | 0 | 69 | 140 | 3 | 74 | 3.38e-11 | 57.0 |
Msa0372240 | AT4G05030.1 | 43.056 | 72 | 41 | 0 | 69 | 140 | 36 | 107 | 8.01e-11 | 57.0 |
Find 46 sgRNAs with CRISPR-Local
Find 251 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGATTGCAGTTGGAGTTTC+AGG | 0.157536 | 3_1:+70563470 | Msa0372240:CDS |
CGCTGTTTGGGTCGCAGTTT+GGG | 0.240455 | 3_1:+70561171 | Msa0372240:CDS |
ACACAAGGCCATGCCATAAT+TGG | 0.269055 | 3_1:-70563760 | None:intergenic |
TCAGCTTCTCCGTCGCTGTT+TGG | 0.277697 | 3_1:+70561158 | Msa0372240:CDS |
CAGCTTCTCCGTCGCTGTTT+GGG | 0.296816 | 3_1:+70561159 | Msa0372240:CDS |
AACTGCAATCTTCATGGCTT+TGG | 0.309449 | 3_1:-70563459 | None:intergenic |
AAAGAAAGAAGAACCAATTA+TGG | 0.328215 | 3_1:+70563747 | Msa0372240:CDS |
GTTGTGGGCTGTCGCGGTTC+TGG | 0.329846 | 3_1:+70561261 | Msa0372240:CDS |
TCGCTGTTTGGGTCGCAGTT+TGG | 0.343056 | 3_1:+70561170 | Msa0372240:CDS |
ATGGCATGGCCTTGTGTAAC+TGG | 0.358016 | 3_1:+70563766 | Msa0372240:CDS |
AACTCCAACTGCAATCTTCA+TGG | 0.358381 | 3_1:-70563465 | None:intergenic |
GAAATTCTGTCATGCAGAAT+TGG | 0.360093 | 3_1:+70563693 | Msa0372240:CDS |
GCTGGTGGGTTTCTGCTGTT+TGG | 0.360216 | 3_1:+70561289 | Msa0372240:CDS |
CGTCTGTTCGCCGGAGTTGT+GGG | 0.382594 | 3_1:+70561246 | Msa0372240:CDS |
GGCTGTCGCGGTTCTGGTAC+AGG | 0.391395 | 3_1:+70561267 | Msa0372240:CDS |
TCGTCTGTTCGCCGGAGTTG+TGG | 0.418930 | 3_1:+70561245 | Msa0372240:CDS |
AAGGATCAAATAGAAGTAAT+CGG | 0.441308 | 3_1:+70563628 | Msa0372240:CDS |
CTTATCTCACACACAGGGAC+AGG | 0.478978 | 3_1:-70563802 | None:intergenic |
GCGGTTCTGGTACAGGCTGG+TGG | 0.485122 | 3_1:+70561274 | Msa0372240:CDS |
CTGTCCCTGTGTGTGAGATA+AGG | 0.485521 | 3_1:+70563803 | Msa0372240:CDS |
TCGTGGGTTCGTCTGTTCGC+CGG | 0.485797 | 3_1:+70561237 | Msa0372240:CDS |
TGTCCCTGTGTGTGAGATAA+GGG | 0.495058 | 3_1:+70563804 | Msa0372240:CDS |
ACCGCGACAGCCCACAACTC+CGG | 0.502111 | 3_1:-70561256 | None:intergenic |
GTCGCGGTTCTGGTACAGGC+TGG | 0.505093 | 3_1:+70561271 | Msa0372240:CDS |
CGGTTCTGGTACAGGCTGGT+GGG | 0.511964 | 3_1:+70561275 | Msa0372240:CDS |
TCTTGATGACATTCACATGA+TGG | 0.521926 | 3_1:-70563842 | None:intergenic |
GTGGAAAGTGCAGCAATACA+AGG | 0.533044 | 3_1:+70563598 | Msa0372240:CDS |
GCAGCAAAAGATAGTGATCA+AGG | 0.536634 | 3_1:+70563409 | Msa0372240:intron |
GCCGGAGTTGTGGGCTGTCG+CGG | 0.539246 | 3_1:+70561255 | Msa0372240:CDS |
GTTTCAGTCCGATCTCAAGC+AGG | 0.549864 | 3_1:+70561311 | Msa0372240:CDS |
CACACAGGGACAGGGTAATG+AGG | 0.564551 | 3_1:-70563793 | None:intergenic |
TGAAGGCAACAGAGCAGCGG+AGG | 0.572104 | 3_1:-70561138 | None:intergenic |
ACAACAAACCTGCTTGAGAT+CGG | 0.577663 | 3_1:-70561319 | None:intergenic |
AAAGCCATGAAGATTGCAGT+TGG | 0.583776 | 3_1:+70563461 | Msa0372240:CDS |
AACTGCGACCCAAACAGCGA+CGG | 0.608636 | 3_1:-70561167 | None:intergenic |
AGCTGAAGGCAACAGAGCAG+CGG | 0.614933 | 3_1:-70561141 | None:intergenic |
CATGCAGAATTGGTGAGTGT+TGG | 0.620675 | 3_1:+70563703 | Msa0372240:CDS |
AGCAATACAAGGAGATAGCA+AGG | 0.620845 | 3_1:+70563609 | Msa0372240:CDS |
AAGAAGAACCAATTATGGCA+TGG | 0.625011 | 3_1:+70563752 | Msa0372240:CDS |
TGTTTGGGTCGCAGTTTGGG+TGG | 0.626831 | 3_1:+70561174 | Msa0372240:CDS |
AACAGCGACGGAGAAGCTGA+AGG | 0.634516 | 3_1:-70561155 | None:intergenic |
TCGTCCCTTATCTCACACAC+AGG | 0.651929 | 3_1:-70563808 | None:intergenic |
TTATCTCACACACAGGGACA+GGG | 0.661020 | 3_1:-70563801 | None:intergenic |
CGTCCCTTATCTCACACACA+GGG | 0.689018 | 3_1:-70563807 | None:intergenic |
TGAGGATAACCAGTTACACA+AGG | 0.713738 | 3_1:-70563775 | None:intergenic |
ACGAAGCTGAGCATAAAACA+CGG | 0.743799 | 3_1:-70561218 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTTTTTTTTTTTTTTTTAAA+CGG | - | chr3_1:70562634-70562653 | None:intergenic | 0.0% |
!! | ATAGTATATATATTGAATAA+AGG | - | chr3_1:70563037-70563056 | None:intergenic | 10.0% |
!! | ACTTATGAGATATAAATAAA+TGG | - | chr3_1:70562953-70562972 | None:intergenic | 15.0% |
!! | TTTATATCTCATAAGTATTA+TGG | + | chr3_1:70562957-70562976 | Msa0372240:intron | 15.0% |
!!! | TAATCCTTTTTTGAAATTTT+TGG | - | chr3_1:70563244-70563263 | None:intergenic | 15.0% |
!! | TAAAACAACAAACAAATCAA+TGG | - | chr3_1:70562086-70562105 | None:intergenic | 20.0% |
!! | TTTAATTAGTTGTAGGAAAT+TGG | - | chr3_1:70562711-70562730 | None:intergenic | 20.0% |
!! | GTATATATATTGAATAAAGG+AGG | - | chr3_1:70563034-70563053 | None:intergenic | 20.0% |
!!! | CATTTTTTATCATGCAACTT+TGG | + | chr3_1:70561517-70561536 | Msa0372240:intron | 25.0% |
!!! | GTATTTGTTTCTGATTGTTT+TGG | + | chr3_1:70561859-70561878 | Msa0372240:intron | 25.0% |
!!! | TTTGGTTGTTTTTTGTTTTG+AGG | + | chr3_1:70562385-70562404 | Msa0372240:intron | 25.0% |
!!! | TTGGTTGTTTTTTGTTTTGA+GGG | + | chr3_1:70562386-70562405 | Msa0372240:intron | 25.0% |
! | CAAGTTGTTTAATTAGTTGT+AGG | - | chr3_1:70562718-70562737 | None:intergenic | 25.0% |
! | ATTTACGTACAAAATACAAG+AGG | + | chr3_1:70562785-70562804 | Msa0372240:intron | 25.0% |
!! | CATGCATTTTACGTATTTAT+AGG | - | chr3_1:70562864-70562883 | None:intergenic | 25.0% |
! | TGGTGTATTATTAAAGTTGT+AGG | - | chr3_1:70562905-70562924 | None:intergenic | 25.0% |
! | ACTTTAATAATACACCATTC+CGG | + | chr3_1:70562908-70562927 | Msa0372240:intron | 25.0% |
! | TCCACCAAAAATTTCAAAAA+AGG | + | chr3_1:70563237-70563256 | Msa0372240:intron | 25.0% |
!!! | TCCTTTTTTGAAATTTTTGG+TGG | - | chr3_1:70563241-70563260 | None:intergenic | 25.0% |
! | TAGTTTGGATAATTAAGCTA+TGG | - | chr3_1:70563555-70563574 | None:intergenic | 25.0% |
!!! | ATTTTTGGACATGATTAGTT+TGG | - | chr3_1:70563570-70563589 | None:intergenic | 25.0% |
! | AATCATGTCCAAAAATATTC+AGG | + | chr3_1:70563574-70563593 | Msa0372240:intron | 25.0% |
! | AAGGATCAAATAGAAGTAAT+CGG | + | chr3_1:70563628-70563647 | Msa0372240:CDS | 25.0% |
! | AAAGAAAGAAGAACCAATTA+TGG | + | chr3_1:70563747-70563766 | Msa0372240:CDS | 25.0% |
! | TTTTTATCATGCAACTTTGG+AGG | + | chr3_1:70561520-70561539 | Msa0372240:intron | 30.0% |
!!! | ACTTTTTGTATGCTGGTTTT+CGG | + | chr3_1:70562133-70562152 | Msa0372240:intron | 30.0% |
! | GGCTTGATTTGAATAAATGA+CGG | + | chr3_1:70562654-70562673 | Msa0372240:intron | 30.0% |
! | TTATAGGCATTAGTTCTTTG+TGG | - | chr3_1:70562848-70562867 | None:intergenic | 30.0% |
!! | ATTAGAAGAAGCTTTGTTTC+CGG | - | chr3_1:70562930-70562949 | None:intergenic | 30.0% |
TCTCATAAGTATTATGGCTA+AGG | + | chr3_1:70562963-70562982 | Msa0372240:intron | 30.0% | |
!!! | TCACACTACTTTTTTTTAGC+AGG | - | chr3_1:70563006-70563025 | None:intergenic | 30.0% |
TATATTGAATAAAGGAGGTC+AGG | - | chr3_1:70563029-70563048 | None:intergenic | 30.0% | |
! | TTTCCACTCCTGAATATTTT+TGG | - | chr3_1:70563585-70563604 | None:intergenic | 30.0% |
!!! | TGTGTTGTTTCGTGTTGTTT+TGG | + | chr3_1:70561487-70561506 | Msa0372240:intron | 35.0% |
!!! | AGGTTTAGTGGTGGTTTTAA+CGG | + | chr3_1:70561540-70561559 | Msa0372240:intron | 35.0% |
CAATGAAGGAGGATTAATCA+TGG | - | chr3_1:70561772-70561791 | None:intergenic | 35.0% | |
CCTTACAACAAAAAACGATC+CGG | - | chr3_1:70561800-70561819 | None:intergenic | 35.0% | |
!!! | GTTTTTTGTTGTAAGGATCG+TGG | + | chr3_1:70561804-70561823 | Msa0372240:intron | 35.0% |
!! | ATTTGCTCTCTGTTTTGTTG+TGG | + | chr3_1:70562001-70562020 | Msa0372240:intron | 35.0% |
!! | TTTGCTCTCTGTTTTGTTGT+GGG | + | chr3_1:70562002-70562021 | Msa0372240:intron | 35.0% |
AAAAAGTCAGACAAGAGACA+TGG | - | chr3_1:70562120-70562139 | None:intergenic | 35.0% | |
! | TTGTCTGACTTTTTGTATGC+TGG | + | chr3_1:70562126-70562145 | Msa0372240:intron | 35.0% |
!! | AATTTGTGCTTGACTTGGTT+TGG | + | chr3_1:70562203-70562222 | Msa0372240:intron | 35.0% |
! | TGGTTTTTCTCTAGTGTACT+AGG | + | chr3_1:70562223-70562242 | Msa0372240:intron | 35.0% |
! | GGTTTTTCTCTAGTGTACTA+GGG | + | chr3_1:70562224-70562243 | Msa0372240:intron | 35.0% |
! | GTTTTTCTCTAGTGTACTAG+GGG | + | chr3_1:70562225-70562244 | Msa0372240:intron | 35.0% |
!! | TTTTGAGGGTGATCTTGTTT+GGG | + | chr3_1:70562400-70562419 | Msa0372240:intron | 35.0% |
!!! | TTACAATGGTGGAGGTTTTT+TGG | + | chr3_1:70562458-70562477 | Msa0372240:intron | 35.0% |
!!! | GGTTTTTTGGAGGTTGTTTT+AGG | + | chr3_1:70562471-70562490 | Msa0372240:intron | 35.0% |
!!! | TTTTTGGAGGTTGTTTTAGG+TGG | + | chr3_1:70562474-70562493 | Msa0372240:intron | 35.0% |
TATGATGTTCCGTCTATATG+CGG | + | chr3_1:70562543-70562562 | Msa0372240:intron | 35.0% | |
GCACGAAAGTAAGATACAAA+TGG | - | chr3_1:70562571-70562590 | None:intergenic | 35.0% | |
TGTTTCTTTGAGTCAATGCA+TGG | - | chr3_1:70562744-70562763 | None:intergenic | 35.0% | |
ATCCTTTGCTTGAAATTGAG+AGG | + | chr3_1:70563115-70563134 | Msa0372240:intron | 35.0% | |
TCCTTTGCTTGAAATTGAGA+GGG | + | chr3_1:70563116-70563135 | Msa0372240:intron | 35.0% | |
TTGAAATTGAGAGGGAAAGA+GGG | + | chr3_1:70563124-70563143 | Msa0372240:intron | 35.0% | |
! | ATGACTTGATTAGCTAGAGT+TGG | + | chr3_1:70563311-70563330 | Msa0372240:intron | 35.0% |
TGTCCAAAAATATTCAGGAG+TGG | + | chr3_1:70563579-70563598 | Msa0372240:intron | 35.0% | |
!! | TAGCAGTTTTGTGAGTCTAA+CGG | - | chr3_1:70563668-70563687 | None:intergenic | 35.0% |
GAAATTCTGTCATGCAGAAT+TGG | + | chr3_1:70563693-70563712 | Msa0372240:CDS | 35.0% | |
TGGTGAAGTGAAAAAGAAAG+AGG | + | chr3_1:70563723-70563742 | Msa0372240:CDS | 35.0% | |
AAGAAGAACCAATTATGGCA+TGG | + | chr3_1:70563752-70563771 | Msa0372240:CDS | 35.0% | |
!!! | TGGGTGGCTGTTTTTATGTT+TGG | + | chr3_1:70561190-70561209 | Msa0372240:CDS | 40.0% |
!!! | GGGTGGCTGTTTTTATGTTT+GGG | + | chr3_1:70561191-70561210 | Msa0372240:CDS | 40.0% |
ACGAAGCTGAGCATAAAACA+CGG | - | chr3_1:70561221-70561240 | None:intergenic | 40.0% | |
! | TGTTTTATGCTCAGCTTCGT+GGG | + | chr3_1:70561221-70561240 | Msa0372240:CDS | 40.0% |
ACAACAAACCTGCTTGAGAT+CGG | - | chr3_1:70561322-70561341 | None:intergenic | 40.0% | |
!!! | GTTCTACTGCAGTTGCTTTT+TGG | + | chr3_1:70561340-70561359 | Msa0372240:intron | 40.0% |
AAACAGACAACACCACGTAA+AGG | - | chr3_1:70561397-70561416 | None:intergenic | 40.0% | |
!! | TTTACGTGGTGTTGTCTGTT+TGG | + | chr3_1:70561396-70561415 | Msa0372240:intron | 40.0% |
! | TTTGTGTCGTTGTTATTCGC+CGG | + | chr3_1:70561419-70561438 | Msa0372240:intron | 40.0% |
! | ATGCAACTTTGGAGGTTTAG+TGG | + | chr3_1:70561528-70561547 | Msa0372240:intron | 40.0% |
!!! | TTTTTTGGTGGTGGTGTAAG+TGG | + | chr3_1:70561579-70561598 | Msa0372240:intron | 40.0% |
! | TTATGTGTGGTGCTGAACTT+TGG | + | chr3_1:70561703-70561722 | Msa0372240:intron | 40.0% |
! | TATGTGTGGTGCTGAACTTT+GGG | + | chr3_1:70561704-70561723 | Msa0372240:intron | 40.0% |
ATCCTCCTTCATTGAACTTC+CGG | + | chr3_1:70561778-70561797 | Msa0372240:intron | 40.0% | |
!!! | CCGGATCGTTTTTTGTTGTA+AGG | + | chr3_1:70561797-70561816 | Msa0372240:intron | 40.0% |
!! | TTTTGTTGTAAGGATCGTGG+TGG | + | chr3_1:70561807-70561826 | Msa0372240:intron | 40.0% |
! | TTTGTTGTAAGGATCGTGGT+GGG | + | chr3_1:70561808-70561827 | Msa0372240:intron | 40.0% |
AGAGCAAATGACGACAATCA+TGG | - | chr3_1:70561990-70562009 | None:intergenic | 40.0% | |
!! | TGTTTTGTTGTGGGTGGTTT+AGG | + | chr3_1:70562011-70562030 | Msa0372240:intron | 40.0% |
! | GTTTAGGTGTCTAGGATGTT+TGG | + | chr3_1:70562027-70562046 | Msa0372240:intron | 40.0% |
!!! | TTTTGTATGCTGGTTTTCGG+TGG | + | chr3_1:70562136-70562155 | Msa0372240:intron | 40.0% |
!!! | TTTGTATGCTGGTTTTCGGT+GGG | + | chr3_1:70562137-70562156 | Msa0372240:intron | 40.0% |
CAAAGCCCAAAAAACCAACA+TGG | - | chr3_1:70562265-70562284 | None:intergenic | 40.0% | |
! | TTTGTGTTGTGCTCTTTTGG+TGG | + | chr3_1:70562281-70562300 | Msa0372240:intron | 40.0% |
TGAGATAGCTGCTTGATCTT+CGG | + | chr3_1:70562322-70562341 | Msa0372240:intron | 40.0% | |
!!! | GTTTTGAGGGTGATCTTGTT+TGG | + | chr3_1:70562399-70562418 | Msa0372240:intron | 40.0% |
!! | TTTTAGGTGGTGAGGTGTTT+TGG | + | chr3_1:70562487-70562506 | Msa0372240:intron | 40.0% |
!!! | TTTTGGAGCGTTTATCTCCA+GGG | + | chr3_1:70562504-70562523 | Msa0372240:intron | 40.0% |
!!! | ATCTCCAGGGGTGTTTTTAA+AGG | + | chr3_1:70562517-70562536 | Msa0372240:intron | 40.0% |
!!! | TCTCCAGGGGTGTTTTTAAA+GGG | + | chr3_1:70562518-70562537 | Msa0372240:intron | 40.0% |
!! | AAGAAGCTTTGTTTCCGGAA+TGG | - | chr3_1:70562925-70562944 | None:intergenic | 40.0% |
TCCCTCTCAATTTCAAGCAA+AGG | - | chr3_1:70563120-70563139 | None:intergenic | 40.0% | |
CTTGAAATTGAGAGGGAAAG+AGG | + | chr3_1:70563123-70563142 | Msa0372240:intron | 40.0% | |
GCAGCAAAAGATAGTGATCA+AGG | + | chr3_1:70563409-70563428 | Msa0372240:intron | 40.0% | |
CAATGCACAGCCAAAAATCA+AGG | + | chr3_1:70563435-70563454 | Msa0372240:CDS | 40.0% | |
!!! | TGGCTTTGGACCTTGATTTT+TGG | - | chr3_1:70563448-70563467 | None:intergenic | 40.0% |
AACTGCAATCTTCATGGCTT+TGG | - | chr3_1:70563462-70563481 | None:intergenic | 40.0% | |
AAAGCCATGAAGATTGCAGT+TGG | + | chr3_1:70563461-70563480 | Msa0372240:CDS | 40.0% | |
AACTCCAACTGCAATCTTCA+TGG | - | chr3_1:70563468-70563487 | None:intergenic | 40.0% | |
AAGATTGCAGTTGGAGTTTC+AGG | + | chr3_1:70563470-70563489 | Msa0372240:CDS | 40.0% | |
AGCAATACAAGGAGATAGCA+AGG | + | chr3_1:70563609-70563628 | Msa0372240:CDS | 40.0% | |
TGAGGATAACCAGTTACACA+AGG | - | chr3_1:70563778-70563797 | None:intergenic | 40.0% | |
! | GTGTTTTATGCTCAGCTTCG+TGG | + | chr3_1:70561220-70561239 | Msa0372240:CDS | 45.0% |
!!! | AGTTGCTTTTTGGTGCTGCT+TGG | + | chr3_1:70561350-70561369 | Msa0372240:intron | 45.0% |
! | CAACTTTGGAGGTTTAGTGG+TGG | + | chr3_1:70561531-70561550 | Msa0372240:intron | 45.0% |
! | TTTTAACGGAGTGTGGTAGC+CGG | + | chr3_1:70561554-70561573 | Msa0372240:intron | 45.0% |
ACACCACCACCAAAAAAACC+CGG | - | chr3_1:70561576-70561595 | None:intergenic | 45.0% | |
!!! | CGGTTTTTGGTGGTTACTTG+CGG | + | chr3_1:70561602-70561621 | Msa0372240:intron | 45.0% |
! | TGCGGTTGAGAGGTTTGTTT+AGG | + | chr3_1:70561620-70561639 | Msa0372240:intron | 45.0% |
! | GCGGTTGAGAGGTTTGTTTA+GGG | + | chr3_1:70561621-70561640 | Msa0372240:intron | 45.0% |
! | CGGTTGAGAGGTTTGTTTAG+GGG | + | chr3_1:70561622-70561641 | Msa0372240:intron | 45.0% |
! | GGTTGAGAGGTTTGTTTAGG+GGG | + | chr3_1:70561623-70561642 | Msa0372240:intron | 45.0% |
! | ATGTGTGGTGCTGAACTTTG+GGG | + | chr3_1:70561705-70561724 | Msa0372240:intron | 45.0% |
GGTACGATTCTAGCGACTAT+AGG | + | chr3_1:70561726-70561745 | Msa0372240:intron | 45.0% | |
GATTCTAGCGACTATAGGTG+TGG | + | chr3_1:70561731-70561750 | Msa0372240:intron | 45.0% | |
ATCCGGAAGTTCAATGAAGG+AGG | - | chr3_1:70561783-70561802 | None:intergenic | 45.0% | |
ACGATCCGGAAGTTCAATGA+AGG | - | chr3_1:70561786-70561805 | None:intergenic | 45.0% | |
CTTGTTGGGGTGGTTATTCT+TGG | + | chr3_1:70561942-70561961 | Msa0372240:intron | 45.0% | |
!! | TGGAGTCAGTTGTTGTTTCG+TGG | + | chr3_1:70561962-70561981 | Msa0372240:intron | 45.0% |
!! | GGAGTCAGTTGTTGTTTCGT+GGG | + | chr3_1:70561963-70561982 | Msa0372240:intron | 45.0% |
! | TAGGTGTCTAGGATGTTTGG+AGG | + | chr3_1:70562030-70562049 | Msa0372240:intron | 45.0% |
! | AGGTGTCTAGGATGTTTGGA+GGG | + | chr3_1:70562031-70562050 | Msa0372240:intron | 45.0% |
GATCTCGAAGCCAAATGAAC+CGG | - | chr3_1:70562163-70562182 | None:intergenic | 45.0% | |
! | GGTTCATTTGGCTTCGAGAT+CGG | + | chr3_1:70562162-70562181 | Msa0372240:intron | 45.0% |
! | GTTCATTTGGCTTCGAGATC+GGG | + | chr3_1:70562163-70562182 | Msa0372240:intron | 45.0% |
GCTGCAATTTGTGCTTGACT+TGG | + | chr3_1:70562198-70562217 | Msa0372240:intron | 45.0% | |
TCTAGTGTACTAGGGGCTTA+GGG | + | chr3_1:70562232-70562251 | Msa0372240:intron | 45.0% | |
CCCAAAAAACCAACATGGCA+GGG | - | chr3_1:70562260-70562279 | None:intergenic | 45.0% | |
!!! | CCCTGCCATGTTGGTTTTTT+GGG | + | chr3_1:70562257-70562276 | Msa0372240:intron | 45.0% |
!! | GGCTTTGTGTTGTGCTCTTT+TGG | + | chr3_1:70562278-70562297 | Msa0372240:intron | 45.0% |
TAGCTGCTTGATCTTCGGTT+AGG | + | chr3_1:70562327-70562346 | Msa0372240:intron | 45.0% | |
GTTAGGTGCTCTTCGAATTG+TGG | + | chr3_1:70562344-70562363 | Msa0372240:intron | 45.0% | |
GGTGGATCCTGTGTTTACAA+TGG | + | chr3_1:70562444-70562463 | Msa0372240:intron | 45.0% | |
GGATCCTGTGTTTACAATGG+TGG | + | chr3_1:70562447-70562466 | Msa0372240:intron | 45.0% | |
TCCTGTGTTTACAATGGTGG+AGG | + | chr3_1:70562450-70562469 | Msa0372240:intron | 45.0% | |
ACCTCCACCATTGTAAACAC+AGG | - | chr3_1:70562454-70562473 | None:intergenic | 45.0% | |
!!! | CAATGGTGGAGGTTTTTTGG+AGG | + | chr3_1:70562461-70562480 | Msa0372240:intron | 45.0% |
!!! | GTTTTGGAGCGTTTATCTCC+AGG | + | chr3_1:70562503-70562522 | Msa0372240:intron | 45.0% |
! | TTTGGAGCGTTTATCTCCAG+GGG | + | chr3_1:70562505-70562524 | Msa0372240:intron | 45.0% |
!!! | CTCCAGGGGTGTTTTTAAAG+GGG | + | chr3_1:70562519-70562538 | Msa0372240:intron | 45.0% |
! | AACCCCTTTAAAAACACCCC+TGG | - | chr3_1:70562524-70562543 | None:intergenic | 45.0% |
!! | CAAATGGTGCCGCATATAGA+CGG | - | chr3_1:70562555-70562574 | None:intergenic | 45.0% |
! | GTGGAAAGTGCAGCAATACA+AGG | + | chr3_1:70563598-70563617 | Msa0372240:CDS | 45.0% |
CATGCAGAATTGGTGAGTGT+TGG | + | chr3_1:70563703-70563722 | Msa0372240:CDS | 45.0% | |
ACACAAGGCCATGCCATAAT+TGG | - | chr3_1:70563763-70563782 | None:intergenic | 45.0% | |
TTATCTCACACACAGGGACA+GGG | - | chr3_1:70563804-70563823 | None:intergenic | 45.0% | |
TGTCCCTGTGTGTGAGATAA+GGG | + | chr3_1:70563804-70563823 | Msa0372240:CDS | 45.0% | |
!! | GTTTAAAAAAAAAAAAAAAA+AGG | + | chr3_1:70562633-70562652 | Msa0372240:intron | 5.0% |
!! | TTTGAATTAAAAATAATTAA+TGG | - | chr3_1:70563520-70563539 | None:intergenic | 5.0% |
GTTTCAGTCCGATCTCAAGC+AGG | + | chr3_1:70561311-70561330 | Msa0372240:CDS | 50.0% | |
AACAACACCAACCACACCTC+CGG | - | chr3_1:70561441-70561460 | None:intergenic | 50.0% | |
!!! | GTGGTGGTTTTAACGGAGTG+TGG | + | chr3_1:70561547-70561566 | Msa0372240:intron | 50.0% |
TTTAACGGAGTGTGGTAGCC+GGG | + | chr3_1:70561555-70561574 | Msa0372240:intron | 50.0% | |
!!! | GTGTGGTAGCCGGGTTTTTT+TGG | + | chr3_1:70561564-70561583 | Msa0372240:intron | 50.0% |
!!! | TGGTAGCCGGGTTTTTTTGG+TGG | + | chr3_1:70561567-70561586 | Msa0372240:intron | 50.0% |
!!! | TAGCCGGGTTTTTTTGGTGG+TGG | + | chr3_1:70561570-70561589 | Msa0372240:intron | 50.0% |
!! | TTTGGTGGTGGTGTAAGTGG+CGG | + | chr3_1:70561582-70561601 | Msa0372240:intron | 50.0% |
! | GTGGTGTAAGTGGCGGTTTT+TGG | + | chr3_1:70561589-70561608 | Msa0372240:intron | 50.0% |
!! | GTGTAAGTGGCGGTTTTTGG+TGG | + | chr3_1:70561592-70561611 | Msa0372240:intron | 50.0% |
! | GAGGTTTGTTTAGGGGGTGA+CGG | + | chr3_1:70561629-70561648 | Msa0372240:intron | 50.0% |
!!! | TGACGGACTTTTGACGCGAA+GGG | + | chr3_1:70561679-70561698 | Msa0372240:intron | 50.0% |
TGACGCGAAGGGATTATGTG+TGG | + | chr3_1:70561690-70561709 | Msa0372240:intron | 50.0% | |
ACTGGTGTGTCTGTCTAGTG+AGG | + | chr3_1:70561904-70561923 | Msa0372240:intron | 50.0% | |
!! | GCTCTCTGTTTTGTTGTGGG+TGG | + | chr3_1:70562005-70562024 | Msa0372240:intron | 50.0% |
TGTGGGTGGTTTAGGTGTCT+AGG | + | chr3_1:70562019-70562038 | Msa0372240:intron | 50.0% | |
CTCTAGTGTACTAGGGGCTT+AGG | + | chr3_1:70562231-70562250 | Msa0372240:intron | 50.0% | |
!!! | GCCCTGCCATGTTGGTTTTT+TGG | + | chr3_1:70562256-70562275 | Msa0372240:intron | 50.0% |
GCCCAAAAAACCAACATGGC+AGG | - | chr3_1:70562261-70562280 | None:intergenic | 50.0% | |
!! | GTGCTCTTTTGGTGGATCAG+AGG | + | chr3_1:70562289-70562308 | Msa0372240:intron | 50.0% |
TCTTCGAATTGTGGCTCGAC+TGG | + | chr3_1:70562353-70562372 | Msa0372240:intron | 50.0% | |
CTTCGAATTGTGGCTCGACT+GGG | + | chr3_1:70562354-70562373 | Msa0372240:intron | 50.0% | |
! | GGGTGAGTAGTGATGATGAG+CGG | + | chr3_1:70562420-70562439 | Msa0372240:intron | 50.0% |
! | TGAGTAGTGATGATGAGCGG+TGG | + | chr3_1:70562423-70562442 | Msa0372240:intron | 50.0% |
!!! | GGAGGTTGTTTTAGGTGGTG+AGG | + | chr3_1:70562479-70562498 | Msa0372240:intron | 50.0% |
!! | ATGGCATGGCCTTGTGTAAC+TGG | + | chr3_1:70563766-70563785 | Msa0372240:CDS | 50.0% |
CTTATCTCACACACAGGGAC+AGG | - | chr3_1:70563805-70563824 | None:intergenic | 50.0% | |
CTGTCCCTGTGTGTGAGATA+AGG | + | chr3_1:70563803-70563822 | Msa0372240:CDS | 50.0% | |
CGTCCCTTATCTCACACACA+GGG | - | chr3_1:70563810-70563829 | None:intergenic | 50.0% | |
TCGTCCCTTATCTCACACAC+AGG | - | chr3_1:70563811-70563830 | None:intergenic | 50.0% | |
AGCTGAAGGCAACAGAGCAG+CGG | - | chr3_1:70561144-70561163 | None:intergenic | 55.0% | |
AACAGCGACGGAGAAGCTGA+AGG | - | chr3_1:70561158-70561177 | None:intergenic | 55.0% | |
TCAGCTTCTCCGTCGCTGTT+TGG | + | chr3_1:70561158-70561177 | Msa0372240:CDS | 55.0% | |
CAGCTTCTCCGTCGCTGTTT+GGG | + | chr3_1:70561159-70561178 | Msa0372240:CDS | 55.0% | |
AACTGCGACCCAAACAGCGA+CGG | - | chr3_1:70561170-70561189 | None:intergenic | 55.0% | |
TCGCTGTTTGGGTCGCAGTT+TGG | + | chr3_1:70561170-70561189 | Msa0372240:CDS | 55.0% | |
CGCTGTTTGGGTCGCAGTTT+GGG | + | chr3_1:70561171-70561190 | Msa0372240:CDS | 55.0% | |
TGTTTGGGTCGCAGTTTGGG+TGG | + | chr3_1:70561174-70561193 | Msa0372240:CDS | 55.0% | |
!! | GCTGGTGGGTTTCTGCTGTT+TGG | + | chr3_1:70561289-70561308 | Msa0372240:CDS | 55.0% |
!! | GTGCTGCTTGGCCTGTGTTT+AGG | + | chr3_1:70561362-70561381 | Msa0372240:intron | 55.0% |
CTGCTTGGCCTGTGTTTAGG+AGG | + | chr3_1:70561365-70561384 | Msa0372240:intron | 55.0% | |
GGTGCAGACCTCCTAAACAC+AGG | - | chr3_1:70561376-70561395 | None:intergenic | 55.0% | |
AGGAGGTCTGCACCTTTACG+TGG | + | chr3_1:70561382-70561401 | Msa0372240:intron | 55.0% | |
! | GTGTCGTTGTTATTCGCCGG+AGG | + | chr3_1:70561422-70561441 | Msa0372240:intron | 55.0% |
! | GTTGTTATTCGCCGGAGGTG+TGG | + | chr3_1:70561427-70561446 | Msa0372240:intron | 55.0% |
! | TTATTCGCCGGAGGTGTGGT+TGG | + | chr3_1:70561431-70561450 | Msa0372240:intron | 55.0% |
GGTGGTTACTTGCGGTTGAG+AGG | + | chr3_1:70561610-70561629 | Msa0372240:intron | 55.0% | |
! | GTTTGTTTAGGGGGTGACGG+TGG | + | chr3_1:70561632-70561651 | Msa0372240:intron | 55.0% |
! | GGTAGGAGTGTAGGTGGTGA+CGG | + | chr3_1:70561662-70561681 | Msa0372240:intron | 55.0% |
!!! | GTGACGGACTTTTGACGCGA+AGG | + | chr3_1:70561678-70561697 | Msa0372240:intron | 55.0% |
!! | TGTAAGGATCGTGGTGGGTG+AGG | + | chr3_1:70561813-70561832 | Msa0372240:intron | 55.0% |
!! | TTTGGTGTCAGACACCCCTC+CGG | + | chr3_1:70561877-70561896 | Msa0372240:intron | 55.0% |
GACAGACACACCAGTGAACC+CGG | - | chr3_1:70561899-70561918 | None:intergenic | 55.0% | |
GGTGTGTCTGTCTAGTGAGG+TGG | + | chr3_1:70561907-70561926 | Msa0372240:intron | 55.0% | |
GTGTCTGTCTAGTGAGGTGG+TGG | + | chr3_1:70561910-70561929 | Msa0372240:intron | 55.0% | |
!! | GTCTAGTGAGGTGGTGGAGT+CGG | + | chr3_1:70561916-70561935 | Msa0372240:intron | 55.0% |
!! | TCTAGTGAGGTGGTGGAGTC+GGG | + | chr3_1:70561917-70561936 | Msa0372240:intron | 55.0% |
!!! | TATGCTGGTTTTCGGTGGGC+CGG | + | chr3_1:70562141-70562160 | Msa0372240:intron | 55.0% |
! | TTTCGGTGGGCCGGTTCATT+TGG | + | chr3_1:70562150-70562169 | Msa0372240:intron | 55.0% |
TTGGCTTCGAGATCGGGAGT+CGG | + | chr3_1:70562169-70562188 | Msa0372240:intron | 55.0% | |
ATTGTGGCTCGACTGGGAGT+TGG | + | chr3_1:70562360-70562379 | Msa0372240:intron | 55.0% | |
TTGTGGCTCGACTGGGAGTT+GGG | + | chr3_1:70562361-70562380 | Msa0372240:intron | 55.0% | |
CTCGACTGGGAGTTGGGATT+TGG | + | chr3_1:70562367-70562386 | Msa0372240:intron | 55.0% | |
! | GTAGTGATGATGAGCGGTGG+TGG | + | chr3_1:70562426-70562445 | Msa0372240:intron | 55.0% |
CACACAGGGACAGGGTAATG+AGG | - | chr3_1:70563796-70563815 | None:intergenic | 55.0% | |
TGAAGGCAACAGAGCAGCGG+AGG | - | chr3_1:70561141-70561160 | None:intergenic | 60.0% | |
TCGTGGGTTCGTCTGTTCGC+CGG | + | chr3_1:70561237-70561256 | Msa0372240:CDS | 60.0% | |
TCGTCTGTTCGCCGGAGTTG+TGG | + | chr3_1:70561245-70561264 | Msa0372240:CDS | 60.0% | |
CGTCTGTTCGCCGGAGTTGT+GGG | + | chr3_1:70561246-70561265 | Msa0372240:CDS | 60.0% | |
! | CGGTTCTGGTACAGGCTGGT+GGG | + | chr3_1:70561275-70561294 | Msa0372240:CDS | 60.0% |
! | TGTTTAGGGGGTGACGGTGG+TGG | + | chr3_1:70561635-70561654 | Msa0372240:intron | 60.0% |
! | GGTGGCTTCGGTAGGAGTGT+AGG | + | chr3_1:70561653-70561672 | Msa0372240:intron | 60.0% |
! | GGCTTCGGTAGGAGTGTAGG+TGG | + | chr3_1:70561656-70561675 | Msa0372240:intron | 60.0% |
GTGGGTGAGGTTGTTCGCGT+CGG | + | chr3_1:70561826-70561845 | Msa0372240:intron | 60.0% | |
!! | TTGGTGTCAGACACCCCTCC+GGG | + | chr3_1:70561878-70561897 | Msa0372240:intron | 60.0% |
ACACACCAGTGAACCCGGAG+GGG | - | chr3_1:70561894-70561913 | None:intergenic | 60.0% | |
GACACACCAGTGAACCCGGA+GGG | - | chr3_1:70561895-70561914 | None:intergenic | 60.0% | |
AGACACACCAGTGAACCCGG+AGG | - | chr3_1:70561896-70561915 | None:intergenic | 60.0% | |
TGGTGGAGTCGGGTGCTTGT+TGG | + | chr3_1:70561927-70561946 | Msa0372240:intron | 60.0% | |
GGTGGAGTCGGGTGCTTGTT+GGG | + | chr3_1:70561928-70561947 | Msa0372240:intron | 60.0% | |
! | GTGGAGTCGGGTGCTTGTTG+GGG | + | chr3_1:70561929-70561948 | Msa0372240:intron | 60.0% |
TGGCTTCGAGATCGGGAGTC+GGG | + | chr3_1:70562170-70562189 | Msa0372240:intron | 60.0% | |
! | CTTAGGGTGCCCTGCCATGT+TGG | + | chr3_1:70562248-70562267 | Msa0372240:intron | 60.0% |
! | TTGGTGGATCAGAGGTCGCG+AGG | + | chr3_1:70562297-70562316 | Msa0372240:intron | 60.0% |
CGTGCACTCCTTGCGTCTTG+CGG | + | chr3_1:70562586-70562605 | Msa0372240:intron | 60.0% | |
GTGCACTCCTTGCGTCTTGC+GGG | + | chr3_1:70562587-70562606 | Msa0372240:intron | 60.0% | |
TGCACTCCTTGCGTCTTGCG+GGG | + | chr3_1:70562588-70562607 | Msa0372240:intron | 60.0% | |
CATCATCCCCGCAAGACGCA+AGG | - | chr3_1:70562597-70562616 | None:intergenic | 60.0% | |
ACCGCGACAGCCCACAACTC+CGG | - | chr3_1:70561259-70561278 | None:intergenic | 65.0% | |
! | GTTGTGGGCTGTCGCGGTTC+TGG | + | chr3_1:70561261-70561280 | Msa0372240:CDS | 65.0% |
! | GGCTGTCGCGGTTCTGGTAC+AGG | + | chr3_1:70561267-70561286 | Msa0372240:CDS | 65.0% |
! | GTCGCGGTTCTGGTACAGGC+TGG | + | chr3_1:70561271-70561290 | Msa0372240:CDS | 65.0% |
! | GCGGTTCTGGTACAGGCTGG+TGG | + | chr3_1:70561274-70561293 | Msa0372240:CDS | 65.0% |
! | GTGACGGTGGTGGCTTCGGT+AGG | + | chr3_1:70561645-70561664 | Msa0372240:intron | 65.0% |
GGTGAGGTTGTTCGCGTCGG+TGG | + | chr3_1:70561829-70561848 | Msa0372240:intron | 65.0% | |
AGACACCCCTCCGGGTTCAC+TGG | + | chr3_1:70561886-70561905 | Msa0372240:intron | 65.0% | |
! | GAGTCGGGTGCTTGTTGGGG+TGG | + | chr3_1:70561932-70561951 | Msa0372240:intron | 65.0% |
GGCTTCGAGATCGGGAGTCG+GGG | + | chr3_1:70562171-70562190 | Msa0372240:intron | 65.0% | |
! | GCCGGAGTTGTGGGCTGTCG+CGG | + | chr3_1:70561255-70561274 | Msa0372240:CDS | 70.0% |
! | GGGGGTGACGGTGGTGGCTT+CGG | + | chr3_1:70561641-70561660 | Msa0372240:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 70561129 | 70563849 | 70561129 | ID=Msa0372240;Name=Msa0372240 |
chr3_1 | mRNA | 70561129 | 70563849 | 70561129 | ID=Msa0372240-mRNA-1;Parent=Msa0372240;Name=Msa0372240-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0.5|0.33|0.66|0.5|0.66|3|0|179 |
chr3_1 | exon | 70561129 | 70561332 | 70561129 | ID=Msa0372240-mRNA-1:exon:15362;Parent=Msa0372240-mRNA-1 |
chr3_1 | exon | 70563413 | 70563491 | 70563413 | ID=Msa0372240-mRNA-1:exon:15363;Parent=Msa0372240-mRNA-1 |
chr3_1 | exon | 70563596 | 70563849 | 70563596 | ID=Msa0372240-mRNA-1:exon:15364;Parent=Msa0372240-mRNA-1 |
chr3_1 | CDS | 70561129 | 70561332 | 70561129 | ID=Msa0372240-mRNA-1:cds;Parent=Msa0372240-mRNA-1 |
chr3_1 | CDS | 70563413 | 70563491 | 70563413 | ID=Msa0372240-mRNA-1:cds;Parent=Msa0372240-mRNA-1 |
chr3_1 | CDS | 70563596 | 70563849 | 70563596 | ID=Msa0372240-mRNA-1:cds;Parent=Msa0372240-mRNA-1 |
Gene Sequence |
Protein sequence |