Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033340 | XP_013467077.1 | 97.574 | 577 | 14 | 0 | 1 | 577 | 3 | 579 | 0.0 | 1156 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033340 | sp|Q9FNL7|PTR3_ARATH | 62.586 | 580 | 205 | 4 | 6 | 576 | 6 | 582 | 0.0 | 724 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007270 | Msa0033340 | 0.800309 | 1.531306e-48 | -8.615850e-47 |
| Msa0021460 | Msa0033340 | 0.830683 | 2.557775e-55 | -8.615850e-47 |
| Msa0033340 | Msa0040580 | 0.805111 | 1.563029e-49 | -8.615850e-47 |
| Msa0033340 | Msa0055690 | 0.815535 | 8.795867e-52 | -8.615850e-47 |
| Msa0033340 | Msa0055710 | 0.800157 | 1.644229e-48 | -8.615850e-47 |
| Msa0033340 | Msa0055730 | 0.836606 | 8.480237e-57 | -8.615850e-47 |
| Msa0033340 | Msa0109970 | 0.808157 | 3.555914e-50 | -8.615850e-47 |
| Msa0033340 | Msa0109990 | 0.812951 | 3.273959e-51 | -8.615850e-47 |
| Msa0033340 | Msa0118380 | 0.805311 | 1.419012e-49 | -8.615850e-47 |
| Msa0033340 | Msa0142230 | 0.839477 | 1.547554e-57 | -8.615850e-47 |
| Msa0033340 | Msa0153430 | 0.817837 | 2.680095e-52 | -8.615850e-47 |
| Msa0033340 | Msa0156170 | 0.822123 | 2.802972e-53 | -8.615850e-47 |
| Msa0033340 | Msa0156190 | 0.805095 | 1.574771e-49 | -8.615850e-47 |
| Msa0033340 | Msa0173990 | 0.812181 | 4.824382e-51 | -8.615850e-47 |
| Msa0033340 | Msa0193010 | 0.858194 | 9.738758e-63 | -8.615850e-47 |
| Msa0033340 | Msa0208630 | 0.803898 | 2.798686e-49 | -8.615850e-47 |
| Msa0033340 | Msa0212310 | 0.824023 | 1.010589e-53 | -8.615850e-47 |
| Msa0033340 | Msa0235190 | 0.851335 | 9.492929e-61 | -8.615850e-47 |
| Msa0033340 | Msa0273570 | 0.824922 | 6.207195e-54 | -8.615850e-47 |
| Msa0033340 | Msa0273580 | 0.822485 | 2.309915e-53 | -8.615850e-47 |
| Msa0033340 | Msa0274520 | 0.806213 | 9.174798e-50 | -8.615850e-47 |
| Msa0033340 | Msa0292180 | 0.800170 | 1.633787e-48 | -8.615850e-47 |
| Msa0033340 | Msa0313780 | 0.823886 | 1.088190e-53 | -8.615850e-47 |
| Msa0033340 | Msa0313920 | 0.836998 | 6.734459e-57 | -8.615850e-47 |
| Msa0033340 | Msa0344830 | 0.808409 | 3.141286e-50 | -8.615850e-47 |
| Msa0033340 | Msa0347180 | 0.802637 | 5.103762e-49 | -8.615850e-47 |
| Msa0033340 | Msa0347360 | 0.810751 | 9.866377e-51 | -8.615850e-47 |
| Msa0033340 | Msa0363980 | 0.808068 | 3.713543e-50 | -8.615850e-47 |
| Msa0033340 | Msa0372240 | 0.809877 | 1.522541e-50 | -8.615850e-47 |
| Msa0033340 | Msa0442850 | 0.808081 | 3.689369e-50 | -8.615850e-47 |
| Msa0033340 | Msa0458700 | 0.812715 | 3.687893e-51 | -8.615850e-47 |
| Msa0033340 | Msa0466280 | 0.801475 | 8.849961e-49 | -8.615850e-47 |
| Msa0033340 | Msa0473240 | 0.804360 | 2.242079e-49 | -8.615850e-47 |
| Msa0033340 | Msa0517330 | 0.802628 | 5.125593e-49 | -8.615850e-47 |
| Msa0033340 | Msa0533290 | 0.802346 | 5.859068e-49 | -8.615850e-47 |
| Msa0033340 | Msa0535060 | 0.805357 | 1.387905e-49 | -8.615850e-47 |
| Msa0033340 | Msa0555950 | 0.811215 | 7.825393e-51 | -8.615850e-47 |
| Msa0033340 | Msa0580610 | 0.802722 | 4.903272e-49 | -8.615850e-47 |
| Msa0033340 | Msa0610370 | 0.816124 | 6.502086e-52 | -8.615850e-47 |
| Msa0033340 | Msa0623080 | 0.806327 | 8.683037e-50 | -8.615850e-47 |
| Msa0033340 | Msa0629850 | 0.823624 | 1.253275e-53 | -8.615850e-47 |
| Msa0033340 | Msa0638280 | 0.815939 | 7.148684e-52 | -8.615850e-47 |
| Msa0033340 | Msa0638320 | 0.810392 | 1.179103e-50 | -8.615850e-47 |
| Msa0033340 | Msa0650900 | 0.814657 | 1.378301e-51 | -8.615850e-47 |
| Msa0033340 | Msa0657670 | 0.802744 | 4.850927e-49 | -8.615850e-47 |
| Msa0033340 | Msa0677270 | 0.805872 | 1.082118e-49 | -8.615850e-47 |
| Msa0033340 | Msa0689010 | 0.813977 | 1.947770e-51 | -8.615850e-47 |
| Msa0033340 | Msa0702870 | 0.815272 | 1.006611e-51 | -8.615850e-47 |
| Msa0033340 | Msa0734660 | 0.811403 | 7.123696e-51 | -8.615850e-47 |
| Msa0033340 | Msa0782080 | 0.806083 | 9.769178e-50 | -8.615850e-47 |
| Msa0033340 | Msa0818010 | 0.802569 | 5.271407e-49 | -8.615850e-47 |
| Msa0033340 | Msa0818030 | 0.822650 | 2.115098e-53 | -8.615850e-47 |
| Msa0033340 | Msa0858360 | 0.806493 | 8.007206e-50 | -8.615850e-47 |
| Msa0033340 | Msa0898370 | 0.810778 | 9.731891e-51 | -8.615850e-47 |
| Msa0033340 | Msa1006250 | 0.815057 | 1.123654e-51 | -8.615850e-47 |
| Msa0033340 | Msa1009270 | 0.826642 | 2.425048e-54 | -8.615850e-47 |
| Msa0033340 | Msa1020720 | 0.819930 | 8.967933e-53 | -8.615850e-47 |
| Msa0033340 | Msa1026760 | 0.809509 | 1.827063e-50 | -8.615850e-47 |
| Msa0033340 | Msa1026790 | 0.807459 | 5.003731e-50 | -8.615850e-47 |
| Msa0033340 | Msa1027240 | 0.830922 | 2.235343e-55 | -8.615850e-47 |
| Msa0033340 | Msa1027290 | 0.827872 | 1.230445e-54 | -8.615850e-47 |
| Msa0033340 | Msa1077950 | 0.847351 | 1.221695e-59 | -8.615850e-47 |
| Msa0033340 | Msa1107800 | 0.825367 | 4.873091e-54 | -8.615850e-47 |
| Msa0033340 | Msa1139410 | 0.804824 | 1.794725e-49 | -8.615850e-47 |
| Msa0033340 | Msa1154160 | 0.809375 | 1.952430e-50 | -8.615850e-47 |
| Msa0033340 | Msa1198090 | 0.806882 | 6.629374e-50 | -8.615850e-47 |
| Msa0033340 | Msa1206020 | 0.803940 | 2.742987e-49 | -8.615850e-47 |
| Msa0033340 | Msa1369530 | 0.802233 | 6.183629e-49 | -8.615850e-47 |
| Msa0033340 | Msa1384320 | 0.802932 | 4.437363e-49 | -8.615850e-47 |
| Msa0033340 | Msa1396830 | 0.830271 | 3.225771e-55 | -8.615850e-47 |
| Msa0033340 | Msa1406600 | 0.809657 | 1.697650e-50 | -8.615850e-47 |
| Msa0033340 | Msa1427830 | 0.807462 | 4.995200e-50 | -8.615850e-47 |
| Msa0033340 | Msa1446960 | 0.803793 | 2.942672e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033340 | MtrunA17_Chr1g0166741 | 97.574 | 577 | 14 | 0 | 1 | 577 | 3 | 579 | 0.0 | 1156 |
| Msa0033340 | MtrunA17_Chr1g0166791 | 81.090 | 587 | 101 | 2 | 1 | 580 | 3 | 586 | 0.0 | 989 |
| Msa0033340 | MtrunA17_Chr1g0166771 | 89.852 | 542 | 55 | 0 | 39 | 580 | 5 | 546 | 0.0 | 983 |
| Msa0033340 | MtrunA17_Chr1g0187241 | 70.137 | 586 | 163 | 4 | 1 | 576 | 1 | 584 | 0.0 | 864 |
| Msa0033340 | MtrunA17_Chr1g0166711 | 72.774 | 584 | 151 | 2 | 1 | 577 | 1 | 583 | 0.0 | 857 |
| Msa0033340 | MtrunA17_Chr7g0261811 | 58.481 | 566 | 224 | 4 | 8 | 564 | 10 | 573 | 0.0 | 707 |
| Msa0033340 | MtrunA17_Chr7g0261881 | 57.951 | 566 | 227 | 4 | 8 | 564 | 10 | 573 | 0.0 | 702 |
| Msa0033340 | MtrunA17_Chr7g0261771 | 57.951 | 566 | 227 | 5 | 8 | 564 | 14 | 577 | 0.0 | 701 |
| Msa0033340 | MtrunA17_Chr7g0261791 | 59.469 | 565 | 217 | 4 | 2 | 556 | 6 | 568 | 0.0 | 700 |
| Msa0033340 | MtrunA17_Chr1g0166731 | 73.774 | 469 | 115 | 2 | 111 | 572 | 8 | 475 | 0.0 | 684 |
| Msa0033340 | MtrunA17_Chr7g0261851 | 58.761 | 565 | 222 | 4 | 1 | 556 | 4 | 566 | 0.0 | 675 |
| Msa0033340 | MtrunA17_Chr7g0261661 | 57.484 | 461 | 185 | 5 | 113 | 564 | 1 | 459 | 0.0 | 554 |
| Msa0033340 | MtrunA17_Chr3g0114501 | 48.174 | 575 | 284 | 5 | 8 | 572 | 5 | 575 | 0.0 | 547 |
| Msa0033340 | MtrunA17_Chr7g0261751 | 52.600 | 500 | 190 | 6 | 8 | 462 | 14 | 511 | 0.0 | 533 |
| Msa0033340 | MtrunA17_Chr8g0375311 | 43.082 | 571 | 306 | 4 | 1 | 555 | 12 | 579 | 8.85e-174 | 504 |
| Msa0033340 | MtrunA17_Chr8g0375291 | 43.717 | 565 | 299 | 4 | 2 | 550 | 13 | 574 | 3.79e-173 | 503 |
| Msa0033340 | MtrunA17_Chr3g0104011 | 43.805 | 573 | 303 | 7 | 1 | 561 | 1 | 566 | 4.47e-167 | 487 |
| Msa0033340 | MtrunA17_Chr7g0241741 | 42.403 | 566 | 310 | 5 | 10 | 564 | 7 | 567 | 3.69e-163 | 477 |
| Msa0033340 | MtrunA17_Chr4g0005901 | 42.430 | 568 | 307 | 6 | 2 | 558 | 13 | 571 | 3.65e-160 | 469 |
| Msa0033340 | MtrunA17_Chr8g0375351 | 40.000 | 575 | 318 | 6 | 1 | 555 | 12 | 579 | 1.03e-159 | 469 |
| Msa0033340 | MtrunA17_Chr8g0375341 | 39.405 | 571 | 327 | 4 | 1 | 555 | 12 | 579 | 1.65e-158 | 466 |
| Msa0033340 | MtrunA17_Chr8g0375321 | 40.426 | 564 | 313 | 5 | 8 | 555 | 20 | 576 | 9.22e-157 | 461 |
| Msa0033340 | MtrunA17_Chr8g0375331 | 41.135 | 564 | 309 | 5 | 8 | 555 | 7 | 563 | 2.55e-155 | 457 |
| Msa0033340 | MtrunA17_Chr7g0261731 | 60.651 | 338 | 130 | 2 | 8 | 344 | 14 | 349 | 2.31e-153 | 444 |
| Msa0033340 | MtrunA17_Chr7g0240381 | 40.603 | 564 | 317 | 10 | 9 | 567 | 13 | 563 | 3.33e-147 | 437 |
| Msa0033340 | MtrunA17_Chr8g0375361 | 38.918 | 573 | 332 | 4 | 1 | 558 | 12 | 581 | 5.18e-146 | 434 |
| Msa0033340 | MtrunA17_Chr3g0112671 | 39.748 | 556 | 321 | 9 | 8 | 559 | 16 | 561 | 2.42e-145 | 432 |
| Msa0033340 | MtrunA17_Chr3g0112611 | 38.276 | 580 | 338 | 8 | 8 | 575 | 15 | 586 | 2.41e-144 | 430 |
| Msa0033340 | MtrunA17_Chr4g0008651 | 38.652 | 564 | 330 | 9 | 9 | 563 | 18 | 574 | 1.44e-139 | 417 |
| Msa0033340 | MtrunA17_Chr3g0142101 | 38.434 | 562 | 328 | 9 | 2 | 555 | 12 | 563 | 5.26e-139 | 416 |
| Msa0033340 | MtrunA17_Chr3g0142091 | 39.437 | 568 | 328 | 8 | 2 | 561 | 3 | 562 | 2.55e-138 | 414 |
| Msa0033340 | MtrunA17_Chr3g0077151 | 38.612 | 562 | 299 | 8 | 11 | 558 | 14 | 543 | 1.30e-133 | 400 |
| Msa0033340 | MtrunA17_Chr4g0014781 | 38.378 | 555 | 309 | 8 | 13 | 556 | 17 | 549 | 2.59e-131 | 395 |
| Msa0033340 | MtrunA17_Chr4g0014871 | 38.129 | 556 | 310 | 8 | 13 | 556 | 18 | 551 | 2.69e-131 | 395 |
| Msa0033340 | MtrunA17_Chr4g0014841 | 38.710 | 558 | 305 | 8 | 11 | 556 | 15 | 547 | 2.32e-130 | 392 |
| Msa0033340 | MtrunA17_Chr4g0014791 | 39.568 | 556 | 299 | 8 | 13 | 556 | 17 | 547 | 4.20e-130 | 392 |
| Msa0033340 | MtrunA17_Chr4g0014801 | 38.919 | 555 | 306 | 8 | 13 | 556 | 17 | 549 | 1.63e-128 | 388 |
| Msa0033340 | MtrunA17_Chr5g0422881 | 36.709 | 553 | 335 | 5 | 19 | 558 | 14 | 564 | 1.67e-128 | 389 |
| Msa0033340 | MtrunA17_Chr5g0399061 | 36.918 | 558 | 332 | 6 | 17 | 558 | 19 | 572 | 7.57e-127 | 384 |
| Msa0033340 | MtrunA17_Chr5g0399071 | 38.368 | 576 | 334 | 7 | 17 | 577 | 17 | 586 | 3.38e-126 | 383 |
| Msa0033340 | MtrunA17_Chr7g0255621 | 35.965 | 570 | 338 | 7 | 2 | 555 | 4 | 562 | 1.88e-125 | 381 |
| Msa0033340 | MtrunA17_Chr5g0400371 | 35.346 | 563 | 349 | 4 | 9 | 557 | 96 | 657 | 1.43e-124 | 381 |
| Msa0033340 | MtrunA17_Chr7g0255601 | 35.552 | 571 | 348 | 6 | 1 | 555 | 3 | 569 | 1.30e-123 | 377 |
| Msa0033340 | MtrunA17_Chr4g0056431 | 39.177 | 559 | 321 | 5 | 17 | 558 | 17 | 573 | 1.76e-123 | 376 |
| Msa0033340 | MtrunA17_Chr1g0213711 | 34.526 | 559 | 357 | 5 | 5 | 557 | 1 | 556 | 5.81e-123 | 374 |
| Msa0033340 | MtrunA17_Chr4g0054891 | 34.829 | 557 | 353 | 4 | 8 | 555 | 93 | 648 | 2.42e-122 | 375 |
| Msa0033340 | MtrunA17_Chr8g0353031 | 38.261 | 575 | 313 | 9 | 26 | 579 | 19 | 572 | 5.40e-122 | 372 |
| Msa0033340 | MtrunA17_Chr5g0439381 | 38.351 | 558 | 325 | 5 | 13 | 563 | 16 | 561 | 1.22e-121 | 371 |
| Msa0033340 | MtrunA17_Chr7g0217461 | 35.053 | 562 | 345 | 5 | 11 | 555 | 10 | 568 | 1.15e-120 | 369 |
| Msa0033340 | MtrunA17_Chr4g0063591 | 38.031 | 589 | 339 | 7 | 1 | 576 | 1 | 576 | 1.62e-119 | 365 |
| Msa0033340 | MtrunA17_Chr7g0218851 | 35.009 | 557 | 353 | 5 | 18 | 567 | 39 | 593 | 2.56e-119 | 365 |
| Msa0033340 | MtrunA17_Chr7g0214461 | 34.495 | 545 | 348 | 5 | 29 | 567 | 82 | 623 | 3.08e-119 | 366 |
| Msa0033340 | MtrunA17_Chr7g0255611 | 35.304 | 575 | 346 | 9 | 1 | 555 | 3 | 571 | 5.80e-119 | 365 |
| Msa0033340 | MtrunA17_Chr2g0284701 | 34.965 | 572 | 348 | 7 | 13 | 560 | 19 | 590 | 2.74e-113 | 350 |
| Msa0033340 | MtrunA17_Chr7g0214731 | 34.609 | 575 | 356 | 8 | 6 | 560 | 40 | 614 | 6.92e-112 | 347 |
| Msa0033340 | MtrunA17_Chr5g0415791 | 34.843 | 574 | 343 | 6 | 25 | 575 | 29 | 594 | 7.92e-111 | 344 |
| Msa0033340 | MtrunA17_Chr4g0011041 | 32.337 | 569 | 365 | 8 | 2 | 555 | 15 | 578 | 2.15e-109 | 339 |
| Msa0033340 | MtrunA17_Chr5g0415961 | 33.979 | 568 | 350 | 6 | 13 | 560 | 12 | 574 | 2.89e-106 | 331 |
| Msa0033340 | MtrunA17_Chr2g0276751 | 32.981 | 567 | 362 | 8 | 1 | 562 | 14 | 567 | 2.61e-104 | 326 |
| Msa0033340 | MtrunA17_Chr4g0011471 | 33.959 | 533 | 336 | 5 | 36 | 555 | 27 | 556 | 2.31e-102 | 321 |
| Msa0033340 | MtrunA17_Chr3g0133341 | 33.517 | 543 | 342 | 6 | 24 | 555 | 13 | 547 | 3.75e-102 | 320 |
| Msa0033340 | MtrunA17_Chr8g0362711 | 32.689 | 569 | 351 | 7 | 14 | 559 | 13 | 572 | 2.46e-100 | 315 |
| Msa0033340 | MtrunA17_Chr4g0060001 | 32.884 | 593 | 370 | 10 | 1 | 569 | 1 | 589 | 2.05e-99 | 314 |
| Msa0033340 | MtrunA17_Chr7g0271221 | 31.957 | 557 | 367 | 6 | 12 | 564 | 4 | 552 | 3.45e-98 | 310 |
| Msa0033340 | MtrunA17_Chr4g0014861 | 37.857 | 420 | 241 | 5 | 148 | 556 | 16 | 426 | 1.55e-97 | 304 |
| Msa0033340 | MtrunA17_Chr1g0193391 | 31.404 | 570 | 373 | 9 | 6 | 569 | 1 | 558 | 2.54e-97 | 308 |
| Msa0033340 | MtrunA17_Chr3g0082631 | 36.515 | 482 | 241 | 8 | 109 | 558 | 11 | 459 | 2.01e-96 | 302 |
| Msa0033340 | MtrunA17_Chr8g0379971 | 34.396 | 596 | 343 | 13 | 8 | 560 | 3 | 593 | 2.12e-96 | 306 |
| Msa0033340 | MtrunA17_Chr7g0240271 | 31.681 | 565 | 369 | 6 | 8 | 557 | 7 | 569 | 3.90e-94 | 300 |
| Msa0033340 | MtrunA17_Chr4g0059981 | 31.145 | 594 | 374 | 8 | 5 | 567 | 1 | 590 | 3.20e-93 | 298 |
| Msa0033340 | MtrunA17_Chr4g0059991 | 32.451 | 567 | 357 | 8 | 30 | 574 | 27 | 589 | 3.53e-93 | 298 |
| Msa0033340 | MtrunA17_Chr4g0059971 | 32.550 | 553 | 342 | 8 | 30 | 558 | 39 | 584 | 9.11e-93 | 296 |
| Msa0033340 | MtrunA17_Chr8g0362781 | 30.672 | 551 | 362 | 5 | 24 | 555 | 29 | 578 | 1.60e-90 | 290 |
| Msa0033340 | MtrunA17_Chr7g0240281 | 33.808 | 562 | 354 | 9 | 12 | 556 | 10 | 570 | 7.11e-90 | 289 |
| Msa0033340 | MtrunA17_Chr8g0390331 | 30.473 | 571 | 369 | 8 | 19 | 571 | 9 | 569 | 9.41e-90 | 288 |
| Msa0033340 | MtrunA17_Chr4g0069581 | 32.015 | 531 | 351 | 5 | 42 | 568 | 3 | 527 | 3.32e-88 | 283 |
| Msa0033340 | MtrunA17_Chr1g0157601 | 31.512 | 549 | 340 | 11 | 29 | 555 | 19 | 553 | 3.37e-88 | 284 |
| Msa0033340 | MtrunA17_Chr8g0362801 | 33.833 | 467 | 290 | 6 | 113 | 562 | 1 | 465 | 2.92e-85 | 273 |
| Msa0033340 | MtrunA17_Chr6g0451841 | 30.824 | 558 | 326 | 12 | 32 | 560 | 12 | 538 | 3.75e-83 | 270 |
| Msa0033340 | MtrunA17_Chr8g0379991 | 31.459 | 569 | 333 | 9 | 46 | 560 | 1 | 566 | 4.02e-81 | 265 |
| Msa0033340 | MtrunA17_Chr1g0147631 | 30.435 | 552 | 351 | 9 | 25 | 555 | 25 | 564 | 4.42e-80 | 263 |
| Msa0033340 | MtrunA17_Chr2g0331471 | 31.542 | 577 | 353 | 15 | 25 | 574 | 88 | 649 | 1.08e-78 | 262 |
| Msa0033340 | MtrunA17_Chr1g0157611 | 29.710 | 552 | 356 | 10 | 24 | 555 | 15 | 554 | 1.86e-78 | 258 |
| Msa0033340 | MtrunA17_Chr2g0331481 | 31.542 | 577 | 352 | 16 | 25 | 574 | 26 | 586 | 1.68e-76 | 254 |
| Msa0033340 | MtrunA17_Chr4g0003761 | 29.730 | 555 | 363 | 12 | 29 | 565 | 34 | 579 | 3.80e-76 | 253 |
| Msa0033340 | MtrunA17_Chr7g0235521 | 33.261 | 460 | 290 | 6 | 113 | 557 | 1 | 458 | 2.05e-75 | 248 |
| Msa0033340 | MtrunA17_Chr1g0157621 | 30.228 | 526 | 342 | 10 | 46 | 555 | 1 | 517 | 2.15e-75 | 250 |
| Msa0033340 | MtrunA17_Chr2g0331511 | 29.875 | 559 | 347 | 15 | 25 | 555 | 21 | 562 | 5.09e-75 | 251 |
| Msa0033340 | MtrunA17_Chr7g0240211 | 33.261 | 460 | 290 | 6 | 113 | 557 | 1 | 458 | 1.38e-74 | 245 |
| Msa0033340 | MtrunA17_Chr7g0240181 | 33.261 | 460 | 290 | 6 | 113 | 557 | 1 | 458 | 1.63e-74 | 245 |
| Msa0033340 | MtrunA17_Chr7g0240131 | 33.043 | 460 | 291 | 6 | 113 | 557 | 1 | 458 | 5.31e-74 | 244 |
| Msa0033340 | MtrunA17_Chr2g0331521 | 27.437 | 554 | 367 | 12 | 25 | 555 | 22 | 563 | 7.08e-74 | 246 |
| Msa0033340 | MtrunA17_Chr2g0325951 | 27.158 | 556 | 379 | 7 | 13 | 555 | 2 | 544 | 2.61e-72 | 241 |
| Msa0033340 | MtrunA17_Chr3g0142111 | 37.662 | 308 | 186 | 3 | 2 | 307 | 23 | 326 | 5.97e-70 | 229 |
| Msa0033340 | MtrunA17_Chr2g0326211 | 28.315 | 558 | 370 | 10 | 13 | 555 | 2 | 544 | 8.36e-69 | 232 |
| Msa0033340 | MtrunA17_Chr7g0240151 | 32.174 | 460 | 277 | 7 | 113 | 557 | 1 | 440 | 9.45e-69 | 229 |
| Msa0033340 | MtrunA17_Chr7g0261721 | 53.266 | 199 | 86 | 2 | 370 | 561 | 6 | 204 | 1.50e-68 | 221 |
| Msa0033340 | MtrunA17_Chr5g0415841 | 31.087 | 460 | 296 | 7 | 113 | 555 | 1 | 456 | 3.72e-68 | 228 |
| Msa0033340 | MtrunA17_Chr2g0325961 | 28.064 | 563 | 366 | 10 | 13 | 555 | 2 | 545 | 3.42e-67 | 228 |
| Msa0033340 | MtrunA17_Chr2g0331461 | 30.466 | 558 | 354 | 15 | 25 | 560 | 26 | 571 | 3.36e-66 | 227 |
| Msa0033340 | MtrunA17_Chr7g0234381 | 32.667 | 450 | 267 | 7 | 110 | 555 | 1 | 418 | 1.03e-64 | 218 |
| Msa0033340 | MtrunA17_Chr1g0177591 | 28.415 | 549 | 359 | 14 | 25 | 560 | 42 | 569 | 1.17e-64 | 221 |
| Msa0033340 | MtrunA17_Chr3g0112631 | 36.552 | 290 | 166 | 6 | 300 | 577 | 3 | 286 | 6.51e-62 | 206 |
| Msa0033340 | MtrunA17_Chr7g0234151 | 32.000 | 450 | 270 | 7 | 110 | 555 | 1 | 418 | 3.62e-61 | 208 |
| Msa0033340 | MtrunA17_Chr7g0234181 | 32.127 | 442 | 270 | 7 | 115 | 555 | 1 | 413 | 4.20e-59 | 202 |
| Msa0033340 | MtrunA17_Chr1g0177611 | 29.691 | 421 | 276 | 9 | 151 | 560 | 29 | 440 | 9.74e-56 | 194 |
| Msa0033340 | MtrunA17_Chr1g0177631 | 29.524 | 420 | 278 | 8 | 151 | 560 | 29 | 440 | 6.67e-54 | 189 |
| Msa0033340 | MtrunA17_Chr3g0142121 | 38.521 | 257 | 154 | 4 | 301 | 555 | 11 | 265 | 1.19e-53 | 184 |
| Msa0033340 | MtrunA17_Chr1g0166721 | 64.615 | 130 | 41 | 1 | 1 | 130 | 1 | 125 | 3.00e-53 | 178 |
| Msa0033340 | MtrunA17_Chr4g0060071 | 33.779 | 299 | 181 | 4 | 270 | 555 | 1 | 295 | 2.77e-48 | 170 |
| Msa0033340 | MtrunA17_Chr7g0261831 | 49.359 | 156 | 75 | 3 | 255 | 408 | 1 | 154 | 2.17e-45 | 159 |
| Msa0033340 | MtrunA17_Chr7g0261671 | 66.990 | 103 | 34 | 0 | 8 | 110 | 15 | 117 | 2.97e-44 | 153 |
| Msa0033340 | MtrunA17_Chr3g0112651 | 42.941 | 170 | 92 | 2 | 111 | 280 | 20 | 184 | 6.42e-39 | 142 |
| Msa0033340 | MtrunA17_Chr1g0147591 | 33.000 | 200 | 118 | 4 | 149 | 338 | 3 | 196 | 2.08e-28 | 112 |
| Msa0033340 | MtrunA17_Chr4g0014851 | 42.857 | 98 | 56 | 0 | 13 | 110 | 18 | 115 | 2.78e-23 | 96.7 |
| Msa0033340 | MtrunA17_Chr7g0261821 | 61.194 | 67 | 26 | 0 | 496 | 562 | 1 | 67 | 3.38e-23 | 93.2 |
| Msa0033340 | MtrunA17_Chr3g0112661 | 40.594 | 101 | 60 | 0 | 10 | 110 | 16 | 116 | 1.42e-21 | 90.9 |
| Msa0033340 | MtrunA17_Chr4g0060061 | 37.190 | 121 | 76 | 0 | 138 | 258 | 8 | 128 | 1.53e-21 | 90.9 |
| Msa0033340 | MtrunA17_Chr2g0326221 | 26.754 | 228 | 144 | 5 | 329 | 555 | 15 | 220 | 2.07e-16 | 78.6 |
| Msa0033340 | MtrunA17_Chr8g0362791 | 40.698 | 86 | 51 | 0 | 30 | 115 | 41 | 126 | 2.24e-15 | 73.6 |
| Msa0033340 | MtrunA17_Chr3g0082621 | 49.254 | 67 | 34 | 0 | 44 | 110 | 5 | 71 | 7.05e-15 | 70.5 |
| Msa0033340 | MtrunA17_Chr4g0060051 | 35.185 | 108 | 67 | 1 | 1 | 108 | 1 | 105 | 9.66e-15 | 71.2 |
| Msa0033340 | MtrunA17_Chr7g0261841 | 53.704 | 54 | 24 | 1 | 113 | 165 | 1 | 54 | 8.19e-13 | 64.3 |
| Msa0033340 | MtrunA17_Chr1g0166761 | 78.947 | 38 | 7 | 1 | 1 | 38 | 3 | 39 | 7.74e-12 | 61.2 |
| Msa0033340 | MtrunA17_Chr7g0240221 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 4.03e-11 | 60.5 |
| Msa0033340 | MtrunA17_Chr7g0240191 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 4.03e-11 | 60.5 |
| Msa0033340 | MtrunA17_Chr7g0240161 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 4.03e-11 | 60.5 |
| Msa0033340 | MtrunA17_Chr7g0240141 | 32.673 | 101 | 66 | 1 | 1 | 99 | 1 | 101 | 4.48e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0033340 | AT5G46050.1 | 62.586 | 580 | 205 | 4 | 6 | 576 | 6 | 582 | 0.0 | 724 |
| Msa0033340 | AT5G46040.1 | 61.646 | 571 | 207 | 4 | 6 | 567 | 6 | 573 | 0.0 | 691 |
| Msa0033340 | AT5G46050.2 | 60.677 | 473 | 174 | 4 | 113 | 576 | 1 | 470 | 0.0 | 563 |
| Msa0033340 | AT2G40460.1 | 49.286 | 560 | 266 | 5 | 10 | 560 | 7 | 557 | 0.0 | 547 |
| Msa0033340 | AT3G54140.1 | 43.576 | 576 | 306 | 6 | 1 | 564 | 1 | 569 | 4.67e-172 | 500 |
| Msa0033340 | AT3G54140.2 | 43.576 | 576 | 306 | 6 | 1 | 564 | 1 | 569 | 4.67e-172 | 500 |
| Msa0033340 | AT5G01180.2 | 42.958 | 568 | 307 | 5 | 10 | 565 | 8 | 570 | 4.01e-163 | 477 |
| Msa0033340 | AT5G01180.3 | 42.958 | 568 | 307 | 5 | 10 | 565 | 8 | 570 | 4.01e-163 | 477 |
| Msa0033340 | AT5G01180.1 | 42.958 | 568 | 307 | 5 | 10 | 565 | 8 | 570 | 4.01e-163 | 477 |
| Msa0033340 | AT2G02040.1 | 40.522 | 575 | 323 | 5 | 1 | 559 | 12 | 583 | 2.29e-161 | 473 |
| Msa0033340 | AT1G62200.1 | 41.758 | 546 | 312 | 2 | 11 | 551 | 36 | 580 | 4.88e-159 | 468 |
| Msa0033340 | AT1G62200.2 | 39.652 | 575 | 312 | 3 | 11 | 551 | 36 | 609 | 2.55e-152 | 451 |
| Msa0033340 | AT1G62200.3 | 39.652 | 575 | 312 | 3 | 11 | 551 | 50 | 623 | 3.53e-152 | 451 |
| Msa0033340 | AT3G53960.1 | 40.204 | 587 | 329 | 9 | 8 | 580 | 18 | 596 | 4.85e-148 | 440 |
| Msa0033340 | AT2G37900.1 | 39.564 | 551 | 320 | 6 | 8 | 553 | 19 | 561 | 5.40e-146 | 434 |
| Msa0033340 | AT2G02020.1 | 39.362 | 564 | 290 | 7 | 1 | 550 | 13 | 538 | 3.27e-144 | 428 |
| Msa0033340 | AT1G12110.1 | 38.850 | 574 | 333 | 6 | 17 | 577 | 17 | 585 | 4.48e-134 | 404 |
| Msa0033340 | AT3G54450.1 | 37.477 | 555 | 311 | 8 | 22 | 558 | 6 | 542 | 1.18e-131 | 396 |
| Msa0033340 | AT2G37900.2 | 40.041 | 487 | 279 | 6 | 72 | 553 | 4 | 482 | 7.44e-127 | 382 |
| Msa0033340 | AT1G32450.1 | 36.155 | 567 | 342 | 7 | 7 | 555 | 17 | 581 | 1.66e-122 | 374 |
| Msa0033340 | AT1G72140.1 | 36.538 | 572 | 316 | 8 | 2 | 556 | 9 | 550 | 1.84e-121 | 370 |
| Msa0033340 | AT2G26690.1 | 37.500 | 560 | 329 | 5 | 8 | 555 | 5 | 555 | 5.49e-121 | 369 |
| Msa0033340 | AT1G22540.1 | 36.937 | 555 | 319 | 8 | 15 | 558 | 18 | 552 | 4.33e-120 | 366 |
| Msa0033340 | AT2G02020.2 | 35.993 | 564 | 288 | 9 | 1 | 550 | 13 | 517 | 9.99e-120 | 364 |
| Msa0033340 | AT1G68570.1 | 38.122 | 543 | 318 | 5 | 29 | 555 | 25 | 565 | 8.28e-118 | 362 |
| Msa0033340 | AT1G68570.2 | 38.491 | 530 | 308 | 5 | 42 | 555 | 8 | 535 | 2.39e-117 | 360 |
| Msa0033340 | AT4G21680.1 | 34.921 | 567 | 339 | 7 | 11 | 555 | 12 | 570 | 7.44e-116 | 357 |
| Msa0033340 | AT1G22550.1 | 35.826 | 575 | 330 | 10 | 2 | 558 | 6 | 559 | 5.94e-115 | 353 |
| Msa0033340 | AT5G19640.1 | 35.283 | 547 | 332 | 8 | 28 | 566 | 60 | 592 | 4.27e-114 | 353 |
| Msa0033340 | AT1G59740.1 | 33.868 | 561 | 366 | 4 | 9 | 564 | 23 | 583 | 4.88e-114 | 352 |
| Msa0033340 | AT2G26690.2 | 38.023 | 526 | 305 | 5 | 42 | 555 | 6 | 522 | 1.29e-113 | 349 |
| Msa0033340 | AT2G26690.3 | 38.224 | 518 | 299 | 5 | 50 | 555 | 2 | 510 | 1.04e-111 | 344 |
| Msa0033340 | AT1G72130.1 | 34.526 | 559 | 320 | 9 | 6 | 556 | 11 | 531 | 1.64e-111 | 343 |
| Msa0033340 | AT3G21670.1 | 36.945 | 563 | 330 | 5 | 12 | 561 | 11 | 561 | 1.76e-111 | 345 |
| Msa0033340 | AT1G72125.1 | 36.348 | 564 | 328 | 9 | 8 | 558 | 11 | 556 | 4.05e-111 | 343 |
| Msa0033340 | AT1G22570.1 | 36.824 | 573 | 328 | 11 | 2 | 558 | 6 | 560 | 1.40e-110 | 342 |
| Msa0033340 | AT1G33440.1 | 35.889 | 574 | 347 | 9 | 9 | 568 | 20 | 586 | 4.35e-108 | 337 |
| Msa0033340 | AT5G13400.1 | 34.091 | 572 | 359 | 7 | 6 | 559 | 41 | 612 | 5.43e-108 | 337 |
| Msa0033340 | AT1G72120.1 | 36.702 | 564 | 322 | 10 | 8 | 558 | 11 | 552 | 6.05e-108 | 335 |
| Msa0033340 | AT1G69850.1 | 32.358 | 581 | 358 | 6 | 13 | 564 | 11 | 585 | 9.21e-105 | 328 |
| Msa0033340 | AT1G69870.1 | 34.307 | 548 | 340 | 7 | 24 | 555 | 48 | 591 | 3.03e-103 | 325 |
| Msa0033340 | AT1G22570.2 | 37.476 | 531 | 299 | 10 | 44 | 558 | 10 | 523 | 6.79e-103 | 321 |
| Msa0033340 | AT1G27040.1 | 32.389 | 565 | 365 | 4 | 1 | 555 | 1 | 558 | 1.79e-102 | 321 |
| Msa0033340 | AT1G27040.2 | 32.264 | 561 | 363 | 4 | 5 | 555 | 1 | 554 | 1.69e-101 | 318 |
| Msa0033340 | AT3G16180.1 | 31.882 | 574 | 361 | 9 | 25 | 576 | 21 | 586 | 9.54e-99 | 312 |
| Msa0033340 | AT1G18880.1 | 33.151 | 549 | 337 | 8 | 30 | 555 | 22 | 563 | 1.48e-95 | 304 |
| Msa0033340 | AT1G52190.1 | 29.791 | 574 | 374 | 10 | 25 | 575 | 19 | 586 | 5.28e-94 | 300 |
| Msa0033340 | AT1G27040.3 | 32.252 | 524 | 338 | 4 | 42 | 555 | 10 | 526 | 7.52e-94 | 298 |
| Msa0033340 | AT5G14940.1 | 30.357 | 560 | 345 | 9 | 25 | 560 | 5 | 543 | 1.76e-89 | 287 |
| Msa0033340 | AT5G62680.1 | 31.818 | 550 | 345 | 8 | 30 | 555 | 46 | 589 | 2.78e-89 | 288 |
| Msa0033340 | AT5G28470.2 | 30.396 | 556 | 363 | 10 | 22 | 563 | 12 | 557 | 8.37e-89 | 285 |
| Msa0033340 | AT3G25260.1 | 33.087 | 541 | 324 | 10 | 17 | 555 | 11 | 515 | 3.40e-88 | 282 |
| Msa0033340 | AT3G47960.1 | 32.364 | 550 | 340 | 9 | 30 | 555 | 64 | 605 | 3.87e-86 | 280 |
| Msa0033340 | AT5G28470.1 | 30.216 | 556 | 362 | 11 | 22 | 563 | 12 | 555 | 4.32e-86 | 278 |
| Msa0033340 | AT3G45700.1 | 32.714 | 538 | 337 | 11 | 26 | 558 | 15 | 532 | 7.21e-86 | 277 |
| Msa0033340 | AT1G27080.1 | 33.152 | 552 | 346 | 11 | 21 | 559 | 8 | 549 | 1.08e-85 | 278 |
| Msa0033340 | AT3G45650.1 | 31.746 | 567 | 349 | 9 | 6 | 558 | 1 | 543 | 5.22e-85 | 275 |
| Msa0033340 | AT3G45710.1 | 31.560 | 564 | 347 | 11 | 11 | 558 | 4 | 544 | 3.71e-84 | 273 |
| Msa0033340 | AT1G69860.1 | 31.919 | 542 | 353 | 7 | 25 | 558 | 16 | 549 | 7.54e-84 | 272 |
| Msa0033340 | AT5G62730.1 | 29.754 | 568 | 357 | 7 | 13 | 560 | 42 | 587 | 1.51e-82 | 270 |
| Msa0033340 | AT3G45680.1 | 31.734 | 542 | 343 | 11 | 26 | 558 | 19 | 542 | 2.19e-82 | 268 |
| Msa0033340 | AT1G72130.2 | 33.181 | 437 | 258 | 7 | 128 | 556 | 3 | 413 | 2.66e-81 | 261 |
| Msa0033340 | AT1G72130.3 | 33.181 | 437 | 258 | 7 | 128 | 556 | 3 | 413 | 2.66e-81 | 261 |
| Msa0033340 | AT3G01350.1 | 29.843 | 573 | 350 | 11 | 24 | 563 | 3 | 556 | 5.43e-81 | 265 |
| Msa0033340 | AT3G45660.1 | 31.655 | 556 | 340 | 10 | 18 | 558 | 12 | 542 | 1.50e-79 | 261 |
| Msa0033340 | AT3G45660.3 | 31.655 | 556 | 340 | 10 | 18 | 558 | 12 | 542 | 1.50e-79 | 261 |
| Msa0033340 | AT3G45650.2 | 30.523 | 593 | 348 | 11 | 6 | 558 | 1 | 569 | 1.90e-79 | 261 |
| Msa0033340 | AT3G45660.2 | 31.475 | 556 | 341 | 10 | 18 | 558 | 33 | 563 | 3.33e-79 | 261 |
| Msa0033340 | AT3G45720.1 | 30.490 | 551 | 355 | 10 | 17 | 558 | 9 | 540 | 3.24e-78 | 257 |
| Msa0033340 | AT1G27080.2 | 33.140 | 516 | 322 | 11 | 57 | 559 | 2 | 507 | 1.57e-77 | 255 |
| Msa0033340 | AT5G62730.2 | 29.745 | 548 | 343 | 7 | 33 | 560 | 3 | 528 | 3.26e-77 | 254 |
| Msa0033340 | AT3G25280.1 | 31.387 | 548 | 330 | 9 | 17 | 555 | 11 | 521 | 7.16e-77 | 253 |
| Msa0033340 | AT3G45690.1 | 31.041 | 538 | 311 | 16 | 26 | 558 | 17 | 499 | 8.35e-72 | 239 |
| Msa0033340 | AT2G38100.2 | 23.800 | 521 | 339 | 14 | 55 | 555 | 2 | 484 | 1.25e-34 | 137 |
| Msa0033340 | AT2G38100.1 | 23.800 | 521 | 339 | 14 | 55 | 555 | 18 | 500 | 1.82e-34 | 137 |
| Msa0033340 | AT2G38100.3 | 23.800 | 521 | 339 | 14 | 55 | 555 | 24 | 506 | 2.19e-34 | 137 |
| Msa0033340 | AT5G11570.1 | 31.579 | 247 | 162 | 4 | 312 | 555 | 234 | 476 | 7.35e-32 | 129 |
| Msa0033340 | AT5G11570.1 | 25.751 | 233 | 161 | 5 | 13 | 242 | 2 | 225 | 7.91e-22 | 99.4 |
Find 122 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAAGGCTCTTCATGCTTTC+TGG | 0.007486 | 1_1:+60798925 | None:intergenic |
| TCCTTAGCTTAATCCCTATT+TGG | 0.099616 | 1_1:-60799368 | Msa0033340:CDS |
| TTTGAAAGAATTGCTTATTT+TGG | 0.103448 | 1_1:-60801787 | Msa0033340:CDS |
| ATCAATTTGTGTCTATAAAA+AGG | 0.166876 | 1_1:+60800595 | None:intergenic |
| CTAAGCTCATATAATTCTTT+AGG | 0.174512 | 1_1:+60800493 | None:intergenic |
| GCTTCCACAATTTATCCTTA+TGG | 0.191675 | 1_1:-60799004 | Msa0033340:CDS |
| ACATCCATTTCATTGCATTT+AGG | 0.225385 | 1_1:+60800931 | None:intergenic |
| GATGGAACTATTGATCTTAA+AGG | 0.228746 | 1_1:-60802566 | Msa0033340:CDS |
| TCTAACTCTCTAAAAGTTCT+TGG | 0.230349 | 1_1:-60798676 | Msa0033340:CDS |
| TATAGACACAAATTGATTAA+AGG | 0.242682 | 1_1:-60800589 | Msa0033340:CDS |
| CTTCCACAATTTATCCTTAT+GGG | 0.242929 | 1_1:-60799003 | Msa0033340:CDS |
| TGGATGTCTTGCATTGTCTT+TGG | 0.247040 | 1_1:-60800736 | Msa0033340:CDS |
| AGCAATGTAAGCACCTAATA+TGG | 0.250872 | 1_1:+60801660 | None:intergenic |
| ATAAATGTAGCAACCCAAAT+AGG | 0.258960 | 1_1:+60799354 | None:intergenic |
| CATTGCATTTAGGTGGCTTT+AGG | 0.269165 | 1_1:+60800941 | None:intergenic |
| ACCTTAGCCATGCTAATAAA+TGG | 0.270706 | 1_1:+60800562 | None:intergenic |
| CTTGAACTTTGTCTTCTTTG+TGG | 0.285699 | 1_1:-60798734 | Msa0033340:CDS |
| TAAGCTCATATAATTCTTTA+GGG | 0.288071 | 1_1:+60800494 | None:intergenic |
| AATATCAATCATCACATTCT+TGG | 0.288996 | 1_1:-60800626 | Msa0033340:CDS |
| GGGAGTGGCTGAAGCACTTT+TGG | 0.295185 | 1_1:-60798983 | Msa0033340:CDS |
| CCTTAGCTTAATCCCTATTT+GGG | 0.304195 | 1_1:-60799367 | Msa0033340:CDS |
| AGAATTATATGAGCTTAGTT+TGG | 0.337781 | 1_1:-60800488 | Msa0033340:CDS |
| CTTCCAACAATGTCAACAAT+TGG | 0.338699 | 1_1:-60801705 | Msa0033340:CDS |
| GGTTATGCTCTTCCAACTCT+TGG | 0.345107 | 1_1:-60800655 | Msa0033340:CDS |
| GGATGTCTTGCATTGTCTTT+GGG | 0.346838 | 1_1:-60800735 | Msa0033340:CDS |
| ATACAAAGAAAGGCAAATTC+AGG | 0.349133 | 1_1:-60800459 | Msa0033340:CDS |
| TGTAATACCTCTAGGATTCT+TGG | 0.350874 | 1_1:+60799152 | None:intergenic |
| ATAGACACAAATTGATTAAA+GGG | 0.352216 | 1_1:-60800588 | Msa0033340:CDS |
| AAAGTTCAAGACATTTAGTA+TGG | 0.373089 | 1_1:+60798747 | None:intergenic |
| AGGTCATTGTGGCAGCTATA+AGG | 0.378262 | 1_1:-60800543 | Msa0033340:CDS |
| GATTAAGCTAAGGATTTGTT+TGG | 0.378471 | 1_1:+60799377 | None:intergenic |
| ATGCTCATCTTGGACGCTAT+TGG | 0.389843 | 1_1:-60801636 | Msa0033340:CDS |
| GATAATGTGGGTTGGACTCT+TGG | 0.393984 | 1_1:-60800676 | Msa0033340:CDS |
| GTACATGCAGTTAAACTTGC+TGG | 0.397071 | 1_1:+60799243 | None:intergenic |
| GCCACCTAAATGCAATGAAA+TGG | 0.401237 | 1_1:-60800935 | Msa0033340:CDS |
| TCATTAACTACTACTGGAAT+TGG | 0.402950 | 1_1:-60798892 | Msa0033340:CDS |
| AGCTTTCCAACCACCTGTCT+TGG | 0.404551 | 1_1:+60802526 | None:intergenic |
| TCATACTCATTAACTACTAC+TGG | 0.407310 | 1_1:-60798898 | Msa0033340:CDS |
| TATAATTCTTTAGGGTCATC+AGG | 0.411938 | 1_1:+60800502 | None:intergenic |
| TACATTGCTGATGCTCATCT+TGG | 0.413401 | 1_1:-60801646 | Msa0033340:CDS |
| TAGGGTCAAAATCGTCAAAC+TGG | 0.418534 | 1_1:+60800794 | None:intergenic |
| AGCACCAATGGTTGAAATGT+TGG | 0.423208 | 1_1:+60800819 | None:intergenic |
| TAAATGTAGCAACCCAAATA+GGG | 0.425848 | 1_1:+60799355 | None:intergenic |
| AACCCAATTGTTGACATTGT+TGG | 0.426281 | 1_1:+60801702 | None:intergenic |
| GCACCAATGGTTGAAATGTT+GGG | 0.430608 | 1_1:+60800820 | None:intergenic |
| AAAGCTTGCTCATTTCTTGT+TGG | 0.433680 | 1_1:-60802509 | Msa0033340:intron |
| TTAAGCTCTCATTCTTCAAC+TGG | 0.434643 | 1_1:-60800759 | Msa0033340:CDS |
| TACATTATAGCAGTGGGAAC+AGG | 0.437007 | 1_1:-60800853 | Msa0033340:CDS |
| GCAATGGAAGAAGGCATGAT+TGG | 0.445717 | 1_1:-60802605 | Msa0033340:CDS |
| CATTTAGGTGGCTTTAGGCT+TGG | 0.447260 | 1_1:+60800946 | None:intergenic |
| AGAGTTAGAAACTTCAGCTC+TGG | 0.456396 | 1_1:+60798690 | None:intergenic |
| AAGTCTATGTCTTTCAATCA+TGG | 0.461265 | 1_1:+60799071 | None:intergenic |
| TGTCCACACATGCCTTGTTA+AGG | 0.465658 | 1_1:+60799457 | None:intergenic |
| AATGGTTGAAATGTTGGGTT+TGG | 0.467028 | 1_1:+60800825 | None:intergenic |
| AGCAAAATGAATATGCTCAA+TGG | 0.469181 | 1_1:+60799024 | None:intergenic |
| TTCCAACAATGTCAACAATT+GGG | 0.474000 | 1_1:-60801704 | Msa0033340:CDS |
| GCAATGTAAGCACCTAATAT+GGG | 0.476307 | 1_1:+60801661 | None:intergenic |
| GGAAATGAGTACACAAAAGA+TGG | 0.476556 | 1_1:-60802584 | Msa0033340:CDS |
| TCTTTGATGAGTGGCGGAGC+TGG | 0.477484 | 1_1:-60798584 | Msa0033340:three_prime_UTR |
| AGCTCTGGAAACATAGAACT+TGG | 0.480519 | 1_1:+60798705 | None:intergenic |
| TTGGAAGAGTATACAAAGAA+AGG | 0.482322 | 1_1:-60800469 | Msa0033340:CDS |
| ACAATTTATCCTTATGGGAG+TGG | 0.484555 | 1_1:-60798998 | Msa0033340:CDS |
| TAGGTGGCTTTAGGCTTGGT+AGG | 0.485426 | 1_1:+60800950 | None:intergenic |
| AAACCCAACATTTCAACCAT+TGG | 0.488482 | 1_1:-60800823 | Msa0033340:CDS |
| GTGCTTCAGCCACTCCCATA+AGG | 0.489466 | 1_1:+60798989 | None:intergenic |
| AATATTATGGCAATGGAAGA+AGG | 0.492661 | 1_1:-60802614 | None:intergenic |
| TCCATTTATTAGCATGGCTA+AGG | 0.503717 | 1_1:-60800563 | Msa0033340:CDS |
| TGAAGAAGTGTAATACCTCT+AGG | 0.507089 | 1_1:+60799144 | None:intergenic |
| AGGGAGTCCATTTATTAGCA+TGG | 0.513040 | 1_1:-60800569 | Msa0033340:CDS |
| CCAGAAAGCATGAAGAGCCT+TGG | 0.517929 | 1_1:-60798925 | Msa0033340:CDS |
| GTCAAACTGGTCAGCACCAA+TGG | 0.520660 | 1_1:+60800807 | None:intergenic |
| ATTTGAGCAATCATTGCACT+TGG | 0.524066 | 1_1:+60799330 | None:intergenic |
| CCCAAATAGGGATTAAGCTA+AGG | 0.524217 | 1_1:+60799367 | None:intergenic |
| AGCTCTCATTCTTCAACTGG+TGG | 0.525929 | 1_1:-60800756 | Msa0033340:CDS |
| TTCTTCAAAGAATGAGTGTA+GGG | 0.530753 | 1_1:-60799128 | Msa0033340:CDS |
| AACAATGTCAACAATTGGGT+TGG | 0.530864 | 1_1:-60801700 | Msa0033340:CDS |
| TCAATCATCACATTCTTGGC+AGG | 0.532239 | 1_1:-60800622 | Msa0033340:CDS |
| TCCATTTCATTGCATTTAGG+TGG | 0.533894 | 1_1:+60800934 | None:intergenic |
| AGTTTACATACAAGATAATG+TGG | 0.535856 | 1_1:-60800689 | Msa0033340:CDS |
| AGGTGGCTTTAGGCTTGGTA+GGG | 0.557140 | 1_1:+60800951 | None:intergenic |
| ACTGAGAAACATGGTGGTCG+AGG | 0.558387 | 1_1:-60798826 | Msa0033340:CDS |
| GAAAGCAGGTATCAATTGAT+CGG | 0.563143 | 1_1:-60798635 | Msa0033340:exon |
| ATTATAGCAGTGGGAACAGG+TGG | 0.564517 | 1_1:-60800850 | Msa0033340:CDS |
| GATATTGCAAGTCCAAGAGT+TGG | 0.565057 | 1_1:+60800643 | None:intergenic |
| CTTCTTCAAAGAATGAGTGT+AGG | 0.566874 | 1_1:-60799129 | Msa0033340:CDS |
| TGATGAGTGGCGGAGCTGGA+CGG | 0.578293 | 1_1:-60798580 | Msa0033340:three_prime_UTR |
| CATGTGCAGGTTCCTTAACA+AGG | 0.579095 | 1_1:-60799469 | Msa0033340:intron |
| GTTCCTTAACAAGGCATGTG+TGG | 0.580950 | 1_1:-60799460 | Msa0033340:CDS |
| ACAACTCTTAACAGATCCCT+TGG | 0.582141 | 1_1:-60799282 | Msa0033340:CDS |
| GATTATGTAAGTGAAAATCA+TGG | 0.582508 | 1_1:+60799212 | None:intergenic |
| AGAAACATGGTGGTCGAGGG+TGG | 0.584691 | 1_1:-60798822 | Msa0033340:CDS |
| TCATGTCTACTGCAGTGTAT+GGG | 0.587588 | 1_1:-60801813 | Msa0033340:intron |
| TTCCCACTGCTATAATGTAG+AGG | 0.593891 | 1_1:+60800857 | None:intergenic |
| ATGCACAATAACACAAGTAG+AGG | 0.594066 | 1_1:-60799403 | Msa0033340:CDS |
| CAACTGTCATTATCACTATG+TGG | 0.596047 | 1_1:+60799097 | None:intergenic |
| TATACTACATCTTTGATGAG+TGG | 0.598729 | 1_1:-60798593 | Msa0033340:three_prime_UTR |
| AATGGATGTTACAAAATGCA+AGG | 0.601334 | 1_1:-60800917 | Msa0033340:CDS |
| AAACTTACAGAGAAGAAAGC+AGG | 0.603559 | 1_1:-60798649 | Msa0033340:CDS |
| GCCCTCTACATTATAGCAGT+GGG | 0.606132 | 1_1:-60800859 | Msa0033340:CDS |
| TGCCCTCTACATTATAGCAG+TGG | 0.606625 | 1_1:-60800860 | Msa0033340:CDS |
| TCAGATCCAAGACAGGTGGT+TGG | 0.608354 | 1_1:-60802532 | Msa0033340:CDS |
| TCTGTTCTCAGATCCAAGAC+AGG | 0.609180 | 1_1:-60802539 | Msa0033340:CDS |
| AACAAGGCATGTGTGGACAC+TGG | 0.610547 | 1_1:-60799453 | Msa0033340:CDS |
| TTAATGAGTATGATGTTCCA+AGG | 0.610874 | 1_1:+60798908 | None:intergenic |
| ACTACATCTTTGATGAGTGG+CGG | 0.612916 | 1_1:-60798590 | Msa0033340:three_prime_UTR |
| ACATACAAGATAATGTGGGT+TGG | 0.615053 | 1_1:-60800684 | Msa0033340:CDS |
| GTTCAAGTACTAGTAACGAA+TGG | 0.617855 | 1_1:-60799431 | Msa0033340:CDS |
| GAACACAAATAGTGTTTGTG+TGG | 0.618107 | 1_1:+60800888 | None:intergenic |
| TGAAAGACATAGACTTAGTG+TGG | 0.622321 | 1_1:-60799064 | Msa0033340:CDS |
| TCCCACTGCTATAATGTAGA+GGG | 0.626967 | 1_1:+60800858 | None:intergenic |
| TAGCATGGCTAAGGTCATTG+TGG | 0.628074 | 1_1:-60800554 | Msa0033340:CDS |
| ACTCCCATAAGGATAAATTG+TGG | 0.632204 | 1_1:+60799000 | None:intergenic |
| CTGAGAAACATGGTGGTCGA+GGG | 0.632880 | 1_1:-60798825 | Msa0033340:CDS |
| GTTTACATACAAGATAATGT+GGG | 0.647812 | 1_1:-60800688 | Msa0033340:CDS |
| TGGAAGATATGACAGTGCCT+TGG | 0.653184 | 1_1:+60801722 | None:intergenic |
| TCACATGTCACTGAGAAACA+TGG | 0.664134 | 1_1:-60798835 | Msa0033340:CDS |
| GTTCTCAGATCCAAGACAGG+TGG | 0.678500 | 1_1:-60802536 | Msa0033340:CDS |
| CATGCAGTTAAACTTGCTGG+AGG | 0.697718 | 1_1:+60799246 | None:intergenic |
| TTGACAAAGAAGCTTCACCA+AGG | 0.708677 | 1_1:-60801739 | Msa0033340:CDS |
| AAGTTGACCAAGAATCCTAG+AGG | 0.716009 | 1_1:-60799159 | Msa0033340:CDS |
| TTATAGCAGTGGGAACAGGT+GGG | 0.731594 | 1_1:-60800849 | Msa0033340:CDS |
| CATGTCACTGAGAAACATGG+TGG | 0.747015 | 1_1:-60798832 | Msa0033340:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTGAACAATATATAT+AGG | + | chr1_1:60798782-60798801 | None:intergenic | 10.0% |
| !!! | ACTATATTTTTAAAAGAAAA+AGG | - | chr1_1:60799816-60799835 | Msa0033340:intron | 10.0% |
| !!! | AAAAAATTCTGAATTTTTTT+TGG | - | chr1_1:60801116-60801135 | Msa0033340:intron | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | - | chr1_1:60801147-60801166 | Msa0033340:intron | 10.0% |
| !!! | TTTCTCTTATTTTAAAATAT+TGG | - | chr1_1:60801668-60801687 | Msa0033340:CDS | 10.0% |
| !! | AAAATATGTTAATTGTACTA+AGG | + | chr1_1:60798805-60798824 | None:intergenic | 15.0% |
| !! | TAAAGATTATAAATAATCCA+CGG | + | chr1_1:60798955-60798974 | None:intergenic | 15.0% |
| !! | ATAAAAAATAAGAGACATTA+TGG | - | chr1_1:60798977-60798996 | Msa0033340:CDS | 15.0% |
| !!! | AAGATAAAATTTTAGATTAG+AGG | + | chr1_1:60799177-60799196 | None:intergenic | 15.0% |
| !!! | TTCTGCTTTTATTTATTTAT+CGG | - | chr1_1:60799572-60799591 | Msa0033340:intron | 15.0% |
| !!! | TTGTAATAATTCATTAGTTT+TGG | - | chr1_1:60800162-60800181 | Msa0033340:intron | 15.0% |
| !! | GAAAAATTGACATATTTATA+GGG | + | chr1_1:60800857-60800876 | None:intergenic | 15.0% |
| !!! | TAGTGATTGAAAATTTTATA+GGG | + | chr1_1:60800917-60800936 | None:intergenic | 15.0% |
| !!! | AAAATTTTCAATTTCACTTT+TGG | + | chr1_1:60801227-60801246 | None:intergenic | 15.0% |
| !!! | TAAAAGAGATATATAGTTTT+GGG | + | chr1_1:60801333-60801352 | None:intergenic | 15.0% |
| !!! | ATAAAAGAGATATATAGTTT+TGG | + | chr1_1:60801334-60801353 | None:intergenic | 15.0% |
| !! | TTCACTAGAAAAATGTTATT+CGG | - | chr1_1:60798724-60798743 | Msa0033340:CDS | 20.0% |
| !!! | AACAATTTTGGCATTTTTTT+CGG | + | chr1_1:60798911-60798930 | None:intergenic | 20.0% |
| !! | AAAAAAATGCCAAAATTGTT+TGG | - | chr1_1:60798911-60798930 | Msa0033340:CDS | 20.0% |
| !! | TTTACCAACAAAGAAAATAA+TGG | - | chr1_1:60799195-60799214 | Msa0033340:CDS | 20.0% |
| !! | AAACTTATCAACAACATATA+AGG | + | chr1_1:60799283-60799302 | None:intergenic | 20.0% |
| !! | AAACTAACATTCAATTCAAT+GGG | + | chr1_1:60799328-60799347 | None:intergenic | 20.0% |
| !! | AAAACTAACATTCAATTCAA+TGG | + | chr1_1:60799329-60799348 | None:intergenic | 20.0% |
| !!! | TTTGAAAGAATTGCTTATTT+TGG | - | chr1_1:60799387-60799406 | Msa0033340:CDS | 20.0% |
| !!! | AATCAAGAGACATTTTTTTT+TGG | + | chr1_1:60799625-60799644 | None:intergenic | 20.0% |
| !!! | TTTTTTTACAAGATTAGATG+TGG | + | chr1_1:60799917-60799936 | None:intergenic | 20.0% |
| !! | TAAAGCATATTTGATATATC+TGG | - | chr1_1:60800046-60800065 | Msa0033340:intron | 20.0% |
| !! | ATCAATTTGTGTCTATAAAA+AGG | + | chr1_1:60800582-60800601 | None:intergenic | 20.0% |
| !! | TATAGACACAAATTGATTAA+AGG | - | chr1_1:60800585-60800604 | Msa0033340:CDS | 20.0% |
| !! | ATAGACACAAATTGATTAAA+GGG | - | chr1_1:60800586-60800605 | Msa0033340:CDS | 20.0% |
| !! | TAAGCTCATATAATTCTTTA+GGG | + | chr1_1:60800683-60800702 | None:intergenic | 20.0% |
| !!! | TATAGGGTTAAATATGTTTT+TGG | - | chr1_1:60800830-60800849 | Msa0033340:CDS | 20.0% |
| !! | CGAAAAATTGACATATTTAT+AGG | + | chr1_1:60800858-60800877 | None:intergenic | 20.0% |
| !!! | GTAGTGATTGAAAATTTTAT+AGG | + | chr1_1:60800918-60800937 | None:intergenic | 20.0% |
| !!! | AAATTTTCAATCACTACTTT+TGG | - | chr1_1:60800921-60800940 | Msa0033340:CDS | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | chr1_1:60801199-60801218 | Msa0033340:intron | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | chr1_1:60801200-60801219 | Msa0033340:intron | 20.0% |
| !! | TTATAGAGATTAAAAGTTGA+AGG | - | chr1_1:60801245-60801264 | Msa0033340:intron | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | chr1_1:60801290-60801309 | Msa0033340:intron | 20.0% |
| !! | TTATCACATCACTTTAATAT+AGG | - | chr1_1:60801370-60801389 | Msa0033340:intron | 20.0% |
| ! | ATTTGTAAGCAAAAACCTTA+AGG | - | chr1_1:60799029-60799048 | Msa0033340:CDS | 25.0% |
| ! | TTACACTCTATAAGAGTAAA+TGG | + | chr1_1:60799095-60799114 | None:intergenic | 25.0% |
| !! | ATGACCATTATTTTCTTTGT+TGG | + | chr1_1:60799202-60799221 | None:intergenic | 25.0% |
| ! | ATTCAATTCAATGGGTAATA+TGG | + | chr1_1:60799320-60799339 | None:intergenic | 25.0% |
| !!! | AAGAGACATTTTTTTTTGGA+AGG | + | chr1_1:60799621-60799640 | None:intergenic | 25.0% |
| ! | CCTTTCTTATAAAAAACTAG+AGG | + | chr1_1:60799674-60799693 | None:intergenic | 25.0% |
| !!! | CCTCTAGTTTTTTATAAGAA+AGG | - | chr1_1:60799671-60799690 | Msa0033340:intron | 25.0% |
| !! | ACTTAGGATATAAGACTTTT+TGG | - | chr1_1:60800001-60800020 | Msa0033340:intron | 25.0% |
| !!! | AATTCATTAGTTTTGGCTAT+TGG | - | chr1_1:60800169-60800188 | Msa0033340:intron | 25.0% |
| !! | GCTTAAGTGATTTTTCTTTA+GGG | + | chr1_1:60800401-60800420 | None:intergenic | 25.0% |
| !! | AGCTTAAGTGATTTTTCTTT+AGG | + | chr1_1:60800402-60800421 | None:intergenic | 25.0% |
| ! | AGTTTACATACAAGATAATG+TGG | - | chr1_1:60800485-60800504 | Msa0033340:CDS | 25.0% |
| ! | GTTTACATACAAGATAATGT+GGG | - | chr1_1:60800486-60800505 | Msa0033340:CDS | 25.0% |
| ! | AATATCAATCATCACATTCT+TGG | - | chr1_1:60800548-60800567 | Msa0033340:CDS | 25.0% |
| ! | CTAAGCTCATATAATTCTTT+AGG | + | chr1_1:60800684-60800703 | None:intergenic | 25.0% |
| ! | AGAATTATATGAGCTTAGTT+TGG | - | chr1_1:60800686-60800705 | Msa0033340:CDS | 25.0% |
| !! | CTTGATCATATGATTTTACA+AGG | - | chr1_1:60800790-60800809 | Msa0033340:CDS | 25.0% |
| ! | AACACTCTTTCAAAAACTAT+AGG | - | chr1_1:60800813-60800832 | Msa0033340:CDS | 25.0% |
| ! | ACACTCTTTCAAAAACTATA+GGG | - | chr1_1:60800814-60800833 | Msa0033340:CDS | 25.0% |
| !! | TGTTGAAGGAAAATTTTAGA+GGG | + | chr1_1:60800888-60800907 | None:intergenic | 25.0% |
| !! | ATGTTGAAGGAAAATTTTAG+AGG | + | chr1_1:60800889-60800908 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | chr1_1:60801258-60801277 | Msa0033340:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | chr1_1:60801259-60801278 | Msa0033340:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | chr1_1:60801289-60801308 | Msa0033340:intron | 25.0% |
| !!! | AATGGTAGATGTTCTTTTTT+TGG | + | chr1_1:60801472-60801491 | None:intergenic | 25.0% |
| !! | AATACCCTTTTCATAAAACA+AGG | - | chr1_1:60801868-60801887 | Msa0033340:intron | 25.0% |
| !!! | TGTTCCTTGTTTTATGAAAA+GGG | + | chr1_1:60801875-60801894 | None:intergenic | 25.0% |
| !!! | TTGTTCCTTGTTTTATGAAA+AGG | + | chr1_1:60801876-60801895 | None:intergenic | 25.0% |
| ! | GATTATGTAAGTGAAAATCA+TGG | + | chr1_1:60801965-60801984 | None:intergenic | 25.0% |
| !! | TGATTACTACTATGCATTTT+TGG | - | chr1_1:60802404-60802423 | Msa0033340:intron | 25.0% |
| ! | AAAGTTCAAGACATTTAGTA+TGG | + | chr1_1:60802430-60802449 | None:intergenic | 25.0% |
| GATGGAACTATTGATCTTAA+AGG | - | chr1_1:60798608-60798627 | Msa0033340:three_prime_UTR | 30.0% | |
| AGGTAGATTAAATTGTACTG+TGG | + | chr1_1:60798762-60798781 | None:intergenic | 30.0% | |
| AAATGCCAAAATTGTTTGGT+CGG | - | chr1_1:60798915-60798934 | Msa0033340:CDS | 30.0% | |
| TTGATCATCTTAAGCAAAGT+TGG | + | chr1_1:60799238-60799257 | None:intergenic | 30.0% | |
| TTCCAACAATGTCAACAATT+GGG | - | chr1_1:60799470-60799489 | Msa0033340:intron | 30.0% | |
| ! | GTTTTTATGACTCCCATATT+AGG | - | chr1_1:60799501-60799520 | Msa0033340:intron | 30.0% |
| CATGTTAGTCCTTTATTGTT+AGG | - | chr1_1:60799978-60799997 | Msa0033340:intron | 30.0% | |
| ATCCTAAGTCCTAACAATAA+AGG | + | chr1_1:60799990-60800009 | None:intergenic | 30.0% | |
| ACATCCATTTCATTGCATTT+AGG | + | chr1_1:60800246-60800265 | None:intergenic | 30.0% | |
| AATGGATGTTACAAAATGCA+AGG | - | chr1_1:60800257-60800276 | Msa0033340:intron | 30.0% | |
| !! | TATAATTCTTTAGGGTCATC+AGG | + | chr1_1:60800675-60800694 | None:intergenic | 30.0% |
| ! | TTGGAAGAGTATACAAAGAA+AGG | - | chr1_1:60800705-60800724 | Msa0033340:CDS | 30.0% |
| ATACAAAGAAAGGCAAATTC+AGG | - | chr1_1:60800715-60800734 | Msa0033340:CDS | 30.0% | |
| TGATCAAGTAAAAGTGAGTA+CGG | + | chr1_1:60800778-60800797 | None:intergenic | 30.0% | |
| TTATAGGGACTAAATGTTGA+AGG | + | chr1_1:60800902-60800921 | None:intergenic | 30.0% | |
| ! | GATTAAGCTAAGGATTTGTT+TGG | + | chr1_1:60801800-60801819 | None:intergenic | 30.0% |
| TAAATGTAGCAACCCAAATA+GGG | + | chr1_1:60801822-60801841 | None:intergenic | 30.0% | |
| ATAAATGTAGCAACCCAAAT+AGG | + | chr1_1:60801823-60801842 | None:intergenic | 30.0% | |
| TTCTTCAAAGAATGAGTGTA+GGG | - | chr1_1:60802046-60802065 | Msa0033340:intron | 30.0% | |
| AAGTCTATGTCTTTCAATCA+TGG | + | chr1_1:60802106-60802125 | None:intergenic | 30.0% | |
| !!! | CAATGGAACTTCATGTTTTT+TGG | + | chr1_1:60802136-60802155 | None:intergenic | 30.0% |
| AGCAAAATGAATATGCTCAA+TGG | + | chr1_1:60802153-60802172 | None:intergenic | 30.0% | |
| CTTCCACAATTTATCCTTAT+GGG | - | chr1_1:60802171-60802190 | Msa0033340:intron | 30.0% | |
| TTAATGAGTATGATGTTCCA+AGG | + | chr1_1:60802269-60802288 | None:intergenic | 30.0% | |
| TCATACTCATTAACTACTAC+TGG | - | chr1_1:60802276-60802295 | Msa0033340:intron | 30.0% | |
| TCATTAACTACTACTGGAAT+TGG | - | chr1_1:60802282-60802301 | Msa0033340:intron | 30.0% | |
| ! | TCTAACTCTCTAAAAGTTCT+TGG | - | chr1_1:60802498-60802517 | Msa0033340:intron | 30.0% |
| TATACTACATCTTTGATGAG+TGG | - | chr1_1:60802581-60802600 | Msa0033340:CDS | 30.0% | |
| GGAAATGAGTACACAAAAGA+TGG | - | chr1_1:60798590-60798609 | Msa0033340:three_prime_UTR | 35.0% | |
| ! | AAAGCTTGCTCATTTCTTGT+TGG | - | chr1_1:60798665-60798684 | Msa0033340:CDS | 35.0% |
| TTTCTCTCTCACACACTTTA+TGG | - | chr1_1:60798693-60798712 | Msa0033340:CDS | 35.0% | |
| !!! | GCATTTTTTTCGGTTGAGTT+AGG | + | chr1_1:60798901-60798920 | None:intergenic | 35.0% |
| ! | TATGACCGACCAAACAATTT+TGG | + | chr1_1:60798923-60798942 | None:intergenic | 35.0% |
| AAACCTTAAGGAGACATTTG+AGG | - | chr1_1:60799041-60799060 | Msa0033340:CDS | 35.0% | |
| TTAAGGAGACATTTGAGGAT+GGG | - | chr1_1:60799046-60799065 | Msa0033340:CDS | 35.0% | |
| CTTCCAACAATGTCAACAAT+TGG | - | chr1_1:60799469-60799488 | Msa0033340:intron | 35.0% | |
| AACCCAATTGTTGACATTGT+TGG | + | chr1_1:60799475-60799494 | None:intergenic | 35.0% | |
| AACAATGTCAACAATTGGGT+TGG | - | chr1_1:60799474-60799493 | Msa0033340:intron | 35.0% | |
| GCAATGTAAGCACCTAATAT+GGG | + | chr1_1:60799516-60799535 | None:intergenic | 35.0% | |
| AGCAATGTAAGCACCTAATA+TGG | + | chr1_1:60799517-60799536 | None:intergenic | 35.0% | |
| ACATGAAACACCTAAACCAA+TGG | - | chr1_1:60799758-60799777 | Msa0033340:intron | 35.0% | |
| GTCCTTTATTGTTAGGACTT+AGG | - | chr1_1:60799985-60800004 | Msa0033340:intron | 35.0% | |
| !!! | ATTAGTTTTGGCTATTGGCA+GGG | - | chr1_1:60800174-60800193 | Msa0033340:intron | 35.0% |
| TCCATTTCATTGCATTTAGG+TGG | + | chr1_1:60800243-60800262 | None:intergenic | 35.0% | |
| GAACACAAATAGTGTTTGTG+TGG | + | chr1_1:60800289-60800308 | None:intergenic | 35.0% | |
| AATGGTTGAAATGTTGGGTT+TGG | + | chr1_1:60800352-60800371 | None:intergenic | 35.0% | |
| AAACCCAACATTTCAACCAT+TGG | - | chr1_1:60800351-60800370 | Msa0033340:intron | 35.0% | |
| TTAAGCTCTCATTCTTCAAC+TGG | - | chr1_1:60800415-60800434 | Msa0033340:intron | 35.0% | |
| ACATACAAGATAATGTGGGT+TGG | - | chr1_1:60800490-60800509 | Msa0033340:CDS | 35.0% | |
| TCCATTTATTAGCATGGCTA+AGG | - | chr1_1:60800611-60800630 | Msa0033340:CDS | 35.0% | |
| ACCTTAGCCATGCTAATAAA+TGG | + | chr1_1:60800615-60800634 | None:intergenic | 35.0% | |
| ACTCAGAATGAAATTCATGC+AGG | + | chr1_1:60801418-60801437 | None:intergenic | 35.0% | |
| ! | AGAACATCTACCATTTTGCT+TGG | - | chr1_1:60801477-60801496 | Msa0033340:intron | 35.0% |
| ! | TCTTGTTTGTATACATGTGC+AGG | - | chr1_1:60801692-60801711 | Msa0033340:CDS | 35.0% |
| GTTCAAGTACTAGTAACGAA+TGG | - | chr1_1:60801743-60801762 | Msa0033340:CDS | 35.0% | |
| ATGCACAATAACACAAGTAG+AGG | - | chr1_1:60801771-60801790 | Msa0033340:CDS | 35.0% | |
| TCCTTAGCTTAATCCCTATT+TGG | - | chr1_1:60801806-60801825 | Msa0033340:intron | 35.0% | |
| CCTTAGCTTAATCCCTATTT+GGG | - | chr1_1:60801807-60801826 | Msa0033340:intron | 35.0% | |
| ATTTGAGCAATCATTGCACT+TGG | + | chr1_1:60801847-60801866 | None:intergenic | 35.0% | |
| !! | AGGAATTTTTAAGCTGCCAA+GGG | + | chr1_1:60801911-60801930 | None:intergenic | 35.0% |
| !! | TGTAATACCTCTAGGATTCT+TGG | + | chr1_1:60802025-60802044 | None:intergenic | 35.0% |
| ! | TGAAGAAGTGTAATACCTCT+AGG | + | chr1_1:60802033-60802052 | None:intergenic | 35.0% |
| CTTCTTCAAAGAATGAGTGT+AGG | - | chr1_1:60802045-60802064 | Msa0033340:intron | 35.0% | |
| CAACTGTCATTATCACTATG+TGG | + | chr1_1:60802080-60802099 | None:intergenic | 35.0% | |
| TGAAAGACATAGACTTAGTG+TGG | - | chr1_1:60802110-60802129 | Msa0033340:intron | 35.0% | |
| GCTTCCACAATTTATCCTTA+TGG | - | chr1_1:60802170-60802189 | Msa0033340:intron | 35.0% | |
| ACTCCCATAAGGATAAATTG+TGG | + | chr1_1:60802177-60802196 | None:intergenic | 35.0% | |
| ACAATTTATCCTTATGGGAG+TGG | - | chr1_1:60802176-60802195 | Msa0033340:intron | 35.0% | |
| CTTGAACTTTGTCTTCTTTG+TGG | - | chr1_1:60802440-60802459 | Msa0033340:intron | 35.0% | |
| AAACTTACAGAGAAGAAAGC+AGG | - | chr1_1:60802525-60802544 | Msa0033340:CDS | 35.0% | |
| GAAAGCAGGTATCAATTGAT+CGG | - | chr1_1:60802539-60802558 | Msa0033340:CDS | 35.0% | |
| !! | TTTTTCGGTTGAGTTAGGAC+AGG | + | chr1_1:60798896-60798915 | None:intergenic | 40.0% |
| CATCCTCAAATGTCTCCTTA+AGG | + | chr1_1:60799047-60799066 | None:intergenic | 40.0% | |
| CTTAAGGAGACATTTGAGGA+TGG | - | chr1_1:60799045-60799064 | Msa0033340:CDS | 40.0% | |
| ATGATCAACGCATGCTCATT+AGG | - | chr1_1:60799250-60799269 | Msa0033340:CDS | 40.0% | |
| TTCATGTCTACTGCAGTGTA+TGG | - | chr1_1:60799360-60799379 | Msa0033340:CDS | 40.0% | |
| TCATGTCTACTGCAGTGTAT+GGG | - | chr1_1:60799361-60799380 | Msa0033340:CDS | 40.0% | |
| TTGACAAAGAAGCTTCACCA+AGG | - | chr1_1:60799435-60799454 | Msa0033340:CDS | 40.0% | |
| TACATTGCTGATGCTCATCT+TGG | - | chr1_1:60799528-60799547 | Msa0033340:intron | 40.0% | |
| ! | TTTTTCTCACTGTCGAACTC+TGG | + | chr1_1:60799707-60799726 | None:intergenic | 40.0% |
| GTGCTCGGATGAAGAAAAAA+AGG | - | chr1_1:60799788-60799807 | Msa0033340:intron | 40.0% | |
| !!! | CATTAGTTTTGGCTATTGGC+AGG | - | chr1_1:60800173-60800192 | Msa0033340:intron | 40.0% |
| CATTGCATTTAGGTGGCTTT+AGG | + | chr1_1:60800236-60800255 | None:intergenic | 40.0% | |
| GCCACCTAAATGCAATGAAA+TGG | - | chr1_1:60800239-60800258 | Msa0033340:intron | 40.0% | |
| TCCCACTGCTATAATGTAGA+GGG | + | chr1_1:60800319-60800338 | None:intergenic | 40.0% | |
| TTCCCACTGCTATAATGTAG+AGG | + | chr1_1:60800320-60800339 | None:intergenic | 40.0% | |
| TACATTATAGCAGTGGGAAC+AGG | - | chr1_1:60800321-60800340 | Msa0033340:intron | 40.0% | |
| GCACCAATGGTTGAAATGTT+GGG | + | chr1_1:60800357-60800376 | None:intergenic | 40.0% | |
| AGCACCAATGGTTGAAATGT+TGG | + | chr1_1:60800358-60800377 | None:intergenic | 40.0% | |
| TAGGGTCAAAATCGTCAAAC+TGG | + | chr1_1:60800383-60800402 | None:intergenic | 40.0% | |
| TGGATGTCTTGCATTGTCTT+TGG | - | chr1_1:60800438-60800457 | Msa0033340:CDS | 40.0% | |
| GGATGTCTTGCATTGTCTTT+GGG | - | chr1_1:60800439-60800458 | Msa0033340:CDS | 40.0% | |
| GATATTGCAAGTCCAAGAGT+TGG | + | chr1_1:60800534-60800553 | None:intergenic | 40.0% | |
| TCAATCATCACATTCTTGGC+AGG | - | chr1_1:60800552-60800571 | Msa0033340:CDS | 40.0% | |
| AGGGAGTCCATTTATTAGCA+TGG | - | chr1_1:60800605-60800624 | Msa0033340:CDS | 40.0% | |
| CAAGTAAAAGTGAGTACGGT+AGG | + | chr1_1:60800774-60800793 | None:intergenic | 40.0% | |
| CCCAAATAGGGATTAAGCTA+AGG | + | chr1_1:60801810-60801829 | None:intergenic | 40.0% | |
| ACAACTCTTAACAGATCCCT+TGG | - | chr1_1:60801892-60801911 | Msa0033340:intron | 40.0% | |
| !! | GAGGAATTTTTAAGCTGCCA+AGG | + | chr1_1:60801912-60801931 | None:intergenic | 40.0% |
| GTACATGCAGTTAAACTTGC+TGG | + | chr1_1:60801934-60801953 | None:intergenic | 40.0% | |
| AAGTTGACCAAGAATCCTAG+AGG | - | chr1_1:60802015-60802034 | Msa0033340:intron | 40.0% | |
| !! | ACTTTTGGAGGGTGCAAAAA+TGG | - | chr1_1:60802206-60802225 | Msa0033340:intron | 40.0% |
| TCACATGTCACTGAGAAACA+TGG | - | chr1_1:60802339-60802358 | Msa0033340:intron | 40.0% | |
| !! | AGCTCTGGAAACATAGAACT+TGG | + | chr1_1:60802472-60802491 | None:intergenic | 40.0% |
| AGAGTTAGAAACTTCAGCTC+TGG | + | chr1_1:60802487-60802506 | None:intergenic | 40.0% | |
| ACTACATCTTTGATGAGTGG+CGG | - | chr1_1:60802584-60802603 | Msa0033340:CDS | 40.0% | |
| TCTGTTCTCAGATCCAAGAC+AGG | - | chr1_1:60798635-60798654 | Msa0033340:exon | 45.0% | |
| CGGTCATATAGATATGACCG+TGG | - | chr1_1:60798935-60798954 | Msa0033340:CDS | 45.0% | |
| TGGAAGATATGACAGTGCCT+TGG | + | chr1_1:60799455-60799474 | None:intergenic | 45.0% | |
| ATGCTCATCTTGGACGCTAT+TGG | - | chr1_1:60799538-60799557 | Msa0033340:intron | 45.0% | |
| AACACCTAAACCAATGGACG+AGG | - | chr1_1:60799764-60799783 | Msa0033340:intron | 45.0% | |
| !! | CATTTAGGTGGCTTTAGGCT+TGG | + | chr1_1:60800231-60800250 | None:intergenic | 45.0% |
| TGCCCTCTACATTATAGCAG+TGG | - | chr1_1:60800314-60800333 | Msa0033340:intron | 45.0% | |
| GCCCTCTACATTATAGCAGT+GGG | - | chr1_1:60800315-60800334 | Msa0033340:intron | 45.0% | |
| ATTATAGCAGTGGGAACAGG+TGG | - | chr1_1:60800324-60800343 | Msa0033340:intron | 45.0% | |
| TTATAGCAGTGGGAACAGGT+GGG | - | chr1_1:60800325-60800344 | Msa0033340:intron | 45.0% | |
| AGCTCTCATTCTTCAACTGG+TGG | - | chr1_1:60800418-60800437 | Msa0033340:intron | 45.0% | |
| !! | GATAATGTGGGTTGGACTCT+TGG | - | chr1_1:60800498-60800517 | Msa0033340:CDS | 45.0% |
| GGTTATGCTCTTCCAACTCT+TGG | - | chr1_1:60800519-60800538 | Msa0033340:CDS | 45.0% | |
| TAGCATGGCTAAGGTCATTG+TGG | - | chr1_1:60800620-60800639 | Msa0033340:CDS | 45.0% | |
| AGGTCATTGTGGCAGCTATA+AGG | - | chr1_1:60800631-60800650 | Msa0033340:CDS | 45.0% | |
| AGGATCCACACCCAAAATAG+TGG | - | chr1_1:60801390-60801409 | Msa0033340:intron | 45.0% | |
| GGATCCACACCCAAAATAGT+GGG | - | chr1_1:60801391-60801410 | Msa0033340:intron | 45.0% | |
| ! | CATGCAGGTCCCACTATTTT+GGG | + | chr1_1:60801403-60801422 | None:intergenic | 45.0% |
| ! | TCATGCAGGTCCCACTATTT+TGG | + | chr1_1:60801404-60801423 | None:intergenic | 45.0% |
| ACGTCTTCGACCAAGCAAAA+TGG | + | chr1_1:60801490-60801509 | None:intergenic | 45.0% | |
| GTTAGTGTCAATGCCGTTCT+CGG | - | chr1_1:60801578-60801597 | Msa0033340:intron | 45.0% | |
| ACTAACACGAACACCGAGAA+CGG | + | chr1_1:60801594-60801613 | None:intergenic | 45.0% | |
| CATGTGCAGGTTCCTTAACA+AGG | - | chr1_1:60801705-60801724 | Msa0033340:CDS | 45.0% | |
| GTTCCTTAACAAGGCATGTG+TGG | - | chr1_1:60801714-60801733 | Msa0033340:CDS | 45.0% | |
| ! | TGTCCACACATGCCTTGTTA+AGG | + | chr1_1:60801720-60801739 | None:intergenic | 45.0% |
| !! | CATGCAGTTAAACTTGCTGG+AGG | + | chr1_1:60801931-60801950 | None:intergenic | 45.0% |
| CATGTCACTGAGAAACATGG+TGG | - | chr1_1:60802342-60802361 | Msa0033340:intron | 45.0% | |
| !! | TAATATCTAATAAAATATAA+TGG | - | chr1_1:60799130-60799149 | Msa0033340:CDS | 5.0% |
| !! | AATAATAATAATAATTACAT+AGG | + | chr1_1:60799846-60799865 | None:intergenic | 5.0% |
| !! | CAAAAATTAAATTAAAAATA+GGG | + | chr1_1:60800948-60800967 | None:intergenic | 5.0% |
| !! | ACAAAAATTAAATTAAAAAT+AGG | + | chr1_1:60800949-60800968 | None:intergenic | 5.0% |
| !!! | ATGATTTTTTATATTTTTTA+CGG | + | chr1_1:60801077-60801096 | None:intergenic | 5.0% |
| GTTCTCAGATCCAAGACAGG+TGG | - | chr1_1:60798638-60798657 | Msa0033340:exon | 50.0% | |
| TCAGATCCAAGACAGGTGGT+TGG | - | chr1_1:60798642-60798661 | Msa0033340:CDS | 50.0% | |
| AGCTTTCCAACCACCTGTCT+TGG | + | chr1_1:60798651-60798670 | None:intergenic | 50.0% | |
| !! | AGGTGGCTTTAGGCTTGGTA+GGG | + | chr1_1:60800226-60800245 | None:intergenic | 50.0% |
| !! | TAGGTGGCTTTAGGCTTGGT+AGG | + | chr1_1:60800227-60800246 | None:intergenic | 50.0% |
| GTCAAACTGGTCAGCACCAA+TGG | + | chr1_1:60800370-60800389 | None:intergenic | 50.0% | |
| !! | AGGTCCCACTATTTTGGGTG+TGG | + | chr1_1:60801398-60801417 | None:intergenic | 50.0% |
| TGACACTAACACGTCGACAC+TGG | + | chr1_1:60801568-60801587 | None:intergenic | 50.0% | |
| AACAAGGCATGTGTGGACAC+TGG | - | chr1_1:60801721-60801740 | Msa0033340:CDS | 50.0% | |
| !! | AGTGGCTGAAGCACTTTTGG+AGG | - | chr1_1:60802194-60802213 | Msa0033340:intron | 50.0% |
| !! | GTGGCTGAAGCACTTTTGGA+GGG | - | chr1_1:60802195-60802214 | Msa0033340:intron | 50.0% |
| CCAAGGCTCTTCATGCTTTC+TGG | + | chr1_1:60802252-60802271 | None:intergenic | 50.0% | |
| ! | CCAGAAAGCATGAAGAGCCT+TGG | - | chr1_1:60802249-60802268 | Msa0033340:intron | 50.0% |
| ACTGAGAAACATGGTGGTCG+AGG | - | chr1_1:60802348-60802367 | Msa0033340:intron | 50.0% | |
| CTGAGAAACATGGTGGTCGA+GGG | - | chr1_1:60802349-60802368 | Msa0033340:intron | 50.0% | |
| !! | CACGCCTCGTCCATTGGTTT+AGG | + | chr1_1:60799771-60799790 | None:intergenic | 55.0% |
| GTGCTTCAGCCACTCCCATA+AGG | + | chr1_1:60802188-60802207 | None:intergenic | 55.0% | |
| !! | GGGAGTGGCTGAAGCACTTT+TGG | - | chr1_1:60802191-60802210 | Msa0033340:intron | 55.0% |
| AGAAACATGGTGGTCGAGGG+TGG | - | chr1_1:60802352-60802371 | Msa0033340:intron | 55.0% | |
| ! | TCTTTGATGAGTGGCGGAGC+TGG | - | chr1_1:60802590-60802609 | Msa0033340:CDS | 55.0% |
| ACCAATGGACGAGGCGTGCT+CGG | - | chr1_1:60799773-60799792 | Msa0033340:intron | 60.0% | |
| ! | TGATGAGTGGCGGAGCTGGA+CGG | - | chr1_1:60802594-60802613 | Msa0033340:CDS | 60.0% |
| TCCGAGCACGCCTCGTCCAT+TGG | + | chr1_1:60799777-60799796 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 60798572 | 60802624 | 60798572 | ID=Msa0033340;Name=Msa0033340 |
| chr1_1 | mRNA | 60798572 | 60802624 | 60798572 | ID=Msa0033340-mRNA-1;Parent=Msa0033340;Name=Msa0033340-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|1|0.5|1|1|1|4|67|580 |
| chr1_1 | exon | 60798572 | 60799482 | 60798572 | ID=Msa0033340-mRNA-1:exon:19083;Parent=Msa0033340-mRNA-1 |
| chr1_1 | exon | 60800436 | 60801001 | 60800436 | ID=Msa0033340-mRNA-1:exon:19082;Parent=Msa0033340-mRNA-1 |
| chr1_1 | exon | 60801603 | 60801820 | 60801603 | ID=Msa0033340-mRNA-1:exon:19081;Parent=Msa0033340-mRNA-1 |
| chr1_1 | exon | 60802510 | 60802624 | 60802510 | ID=Msa0033340-mRNA-1:exon:19080;Parent=Msa0033340-mRNA-1 |
| chr1_1 | CDS | 60802510 | 60802624 | 60802510 | ID=Msa0033340-mRNA-1:cds;Parent=Msa0033340-mRNA-1 |
| chr1_1 | CDS | 60801603 | 60801820 | 60801603 | ID=Msa0033340-mRNA-1:cds;Parent=Msa0033340-mRNA-1 |
| chr1_1 | CDS | 60800436 | 60801001 | 60800436 | ID=Msa0033340-mRNA-1:cds;Parent=Msa0033340-mRNA-1 |
| chr1_1 | CDS | 60798639 | 60799482 | 60798639 | ID=Msa0033340-mRNA-1:cds;Parent=Msa0033340-mRNA-1 |
| chr1_1 | three_prime_UTR | 60798572 | 60798638 | 60798572 | ID=Msa0033340-mRNA-1:three_prime_utr;Parent=Msa0033340-mRNA-1 |
| Gene Sequence |
| Protein sequence |
