AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0373400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373400 MtrunA17_Chr3g0122701 99.474 380 2 0 1 380 1 380 0.0 767
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0373400 AT1G24310.1 67.560 373 106 4 10 370 1 370 1.40e-164 466

Find 134 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACCTTAAAAGCGTATT+TGG 0.127759 3_1:-72399035 None:intergenic
TGAGTAGTCAATTGAGAATT+TGG 0.173685 3_1:-72398828 None:intergenic
CTATCACCTTCTACTGGTTT+TGG 0.175988 3_1:+72398765 Msa0373400:CDS
CAGACTTTGATCGTGAATTT+TGG 0.193440 3_1:-72402706 None:intergenic
TGGTAACTCAGCTCATCTTC+TGG 0.215937 3_1:+72402677 Msa0373400:CDS
GTATATTTGTCGGAGGATTT+TGG 0.218217 3_1:+72403239 Msa0373400:three_prime_UTR
TATCTGCTTGAAAATGTCTT+TGG 0.301845 3_1:-72402240 None:intergenic
GAAGCGAGACGCACGGGATA+TGG 0.316915 3_1:+72402947 Msa0373400:CDS
AAAACCTTAAAAGCGTATTT+GGG 0.319798 3_1:-72399034 None:intergenic
CAATCTTCATCTTCCCTCTT+CGG 0.322179 3_1:+72398525 Msa0373400:CDS
TTTGTCCATGTATCATGATT+TGG 0.323361 3_1:+72403077 Msa0373400:three_prime_UTR
AACCCAAAGCAATGTTAAAA+TGG 0.323703 3_1:+72402121 Msa0373400:CDS
GTGTAACAGACCCACAGTTT+AGG 0.324603 3_1:+72399688 Msa0373400:CDS
GTTGTTGCTGCTGCTGTTGT+TGG 0.325620 3_1:-72398725 None:intergenic
GACATGGGAACCTCAGAAAA+TGG 0.331518 3_1:+72402987 Msa0373400:CDS
TTGTTGCTGCTGCTGTTGTT+GGG 0.347224 3_1:-72398724 None:intergenic
GGTAACTCAGCTCATCTTCT+GGG 0.368462 3_1:+72402678 Msa0373400:CDS
CCTTCTTCAACTCCCGCTTT+TGG 0.369276 3_1:+72398630 Msa0373400:CDS
GGATCTTTCCCAACGCCTTA+AGG 0.376166 3_1:+72399923 Msa0373400:CDS
TGTAACAGACCCACAGTTTA+GGG 0.381508 3_1:+72399689 Msa0373400:CDS
GCTTCTTCTACACCCGCTTT+CGG 0.390655 3_1:+72398654 Msa0373400:CDS
GAATGTAGGAAGATTCAAAT+AGG 0.392916 3_1:-72403185 None:intergenic
AATCTTCATCTTCCCTCTTC+GGG 0.396928 3_1:+72398526 Msa0373400:CDS
CTTGAAGGGTTCAGCATACA+TGG 0.400271 3_1:+72403207 Msa0373400:three_prime_UTR
AAGGCTAATAGCAATGGATT+TGG 0.408263 3_1:+72402657 Msa0373400:CDS
GATCATGTGGGCGGAAGCTA+TGG 0.409669 3_1:+72399833 Msa0373400:intron
CTGGAGCGGAATTATCTAGA+AGG 0.413522 3_1:+72402604 Msa0373400:CDS
GTGCTGATAGAGAACGTCTT+TGG 0.413609 3_1:+72399877 Msa0373400:CDS
AAAATTTACCTTAAGGCGTT+GGG 0.422159 3_1:-72399931 None:intergenic
AACGGCGAAGGTTGCGGCGC+CGG 0.423275 3_1:-72398804 None:intergenic
GCATTCGGCACTCCAACTTT+CGG 0.423472 3_1:+72398561 Msa0373400:CDS
GAAGAAGGGGTACCGAAGCC+TGG 0.427369 3_1:-72398615 None:intergenic
TAGGCCACAAACATCGCAAA+TGG 0.427930 3_1:-72403166 None:intergenic
GAATCTTCCTACATTCTTGA+AGG 0.428611 3_1:+72403192 Msa0373400:three_prime_UTR
TTCTCAATTGACTACTCAAA+TGG 0.443096 3_1:+72398833 Msa0373400:CDS
TGCCGTATTCCATTAACAAA+AGG 0.445652 3_1:+72402458 Msa0373400:CDS
GCTTTCAGCACCCCAGGCTT+CGG 0.445658 3_1:+72398603 Msa0373400:CDS
TCTACACCCGCTTTCGGTGG+TGG 0.448947 3_1:+72398660 Msa0373400:CDS
GGGACCCCATCTTCAGCATT+CGG 0.452689 3_1:+72398546 Msa0373400:CDS
TGAAACCCAAAACCAGTAGA+AGG 0.453433 3_1:-72398771 None:intergenic
GAGAATAGTGGAGGCGTTGG+AGG 0.455797 3_1:+72402427 Msa0373400:CDS
TGACCCATTTGCGATGTTTG+TGG 0.457218 3_1:+72403162 Msa0373400:three_prime_UTR
TTCAAGCAGATACTCTTCCT+TGG 0.459845 3_1:+72402251 Msa0373400:CDS
CTTTGGCCACAACAAGTTCA+AGG 0.461110 3_1:+72399894 Msa0373400:CDS
ACGCCGCACACCACCATGTT+CGG 0.462481 3_1:+72398498 Msa0373400:exon
AAGCCTGGGGTGCTGAAAGC+TGG 0.465129 3_1:-72398600 None:intergenic
CAAAATTCACGATCAAAGTC+TGG 0.467189 3_1:+72402707 Msa0373400:CDS
TCCGCTAGTGAGAATGGAAC+TGG 0.468365 3_1:-72398867 None:intergenic
TATGGGGAAGCTTGAGGGTA+TGG 0.469058 3_1:+72399851 Msa0373400:CDS
CAGTTTAGGGTGAAGCCTGC+TGG 0.475949 3_1:+72399702 Msa0373400:CDS
TTTGGAAACGGCGAAGGTTG+CGG 0.476917 3_1:-72398810 None:intergenic
TCAAAGTCTGGCTGACCTGC+AGG 0.480292 3_1:+72402719 Msa0373400:CDS
GTCAATTGAGAATTTGGAAA+CGG 0.480882 3_1:-72398822 None:intergenic
GATGAGAATAGTGGAGGCGT+TGG 0.481773 3_1:+72402424 Msa0373400:CDS
TCACGATCCGCTAGTGAGAA+TGG 0.483587 3_1:-72398873 None:intergenic
GCCGTATTCCATTAACAAAA+GGG 0.485365 3_1:+72402459 Msa0373400:CDS
TTTCAACTATCACCTTCTAC+TGG 0.487130 3_1:+72398759 Msa0373400:CDS
GAAGCTATGGGGAAGCTTGA+GGG 0.490154 3_1:+72399846 Msa0373400:CDS
CAGAGACAATGACTTCATCT+TGG 0.494474 3_1:-72402079 None:intergenic
GTTAGCAAGGGTATATTTGT+CGG 0.495850 3_1:+72403229 Msa0373400:three_prime_UTR
AAGAAGGGGTACCGAAGCCT+GGG 0.499083 3_1:-72398614 None:intergenic
TTAAAACCTTGAACTTGTTG+TGG 0.500336 3_1:-72399900 None:intergenic
GTGGAGGCGTTGGAGGGAAA+AGG 0.503729 3_1:+72402434 Msa0373400:CDS
GCGCTTAAATTTAGCAGTCT+AGG 0.504211 3_1:-72398403 None:intergenic
CCAAAAGCGGGAGTTGAAGA+AGG 0.506648 3_1:-72398630 None:intergenic
ACACCAGCTTTCAGCACCCC+AGG 0.510458 3_1:+72398597 Msa0373400:CDS
TTCTACCTGTCTAGTTATTG+TGG 0.512168 3_1:-72402507 None:intergenic
TGTTGCTGCTGCTGTTGTTG+GGG 0.517011 3_1:-72398723 None:intergenic
AGAGAACGGTGTTGAGAAGA+GGG 0.519091 3_1:-72398688 None:intergenic
GATTATGATGGCTGAGGACA+TGG 0.520825 3_1:+72402971 Msa0373400:CDS
TGTTTCAGTCTTTGAATCCA+AGG 0.521920 3_1:-72402268 None:intergenic
ACAGGTATTGCAGCAGCAGA+TGG 0.527438 3_1:+72402896 Msa0373400:intron
GATTCTTATAAAGAAGATGC+TGG 0.529366 3_1:+72399007 Msa0373400:CDS
TGAGAATTTGGAAACGGCGA+AGG 0.531345 3_1:-72398816 None:intergenic
AATCTTCCTACATTCTTGAA+GGG 0.531796 3_1:+72403193 Msa0373400:three_prime_UTR
GGTAGAATCTTACCTCCTGC+AGG 0.538215 3_1:-72402734 None:intergenic
GGAGTGCCGAATGCTGAAGA+TGG 0.538730 3_1:-72398552 None:intergenic
ACTAGCCACAATAACTAGAC+AGG 0.539256 3_1:+72402502 Msa0373400:CDS
ATCATGTGGGCGGAAGCTAT+GGG 0.541380 3_1:+72399834 Msa0373400:CDS
CGTGTCAAGGCTAATAGCAA+TGG 0.543360 3_1:+72402651 Msa0373400:CDS
CTGAAGATGGGGTCCCGAAG+AGG 0.544355 3_1:-72398539 None:intergenic
CAGAGAACGGTGTTGAGAAG+AGG 0.544554 3_1:-72398689 None:intergenic
GGAAGCTATGGGGAAGCTTG+AGG 0.544713 3_1:+72399845 Msa0373400:CDS
GTTTATGTTGCTAGATCATG+TGG 0.544933 3_1:+72399820 Msa0373400:intron
CTGAAAGCTGGTGTTGAAGA+AGG 0.547067 3_1:-72398588 None:intergenic
AGGCCACAAACATCGCAAAT+GGG 0.549395 3_1:-72403165 None:intergenic
TATTACCAAATCATGATACA+TGG 0.551515 3_1:-72403082 None:intergenic
AGAATAGTGGAGGCGTTGGA+GGG 0.552709 3_1:+72402428 Msa0373400:CDS
GAGTGCCGAATGCTGAAGAT+GGG 0.561315 3_1:-72398551 None:intergenic
TGTTCTGAAGCGAGACGCAC+GGG 0.561337 3_1:+72402941 Msa0373400:CDS
AACACTGCCAAGTCTTGCTA+TGG 0.563127 3_1:-72402922 None:intergenic
GAAGAACCACCACCGAAAGC+GGG 0.563527 3_1:-72398666 None:intergenic
GAAGAAGGAGTACCGAAAGT+TGG 0.564163 3_1:-72398573 None:intergenic
GTGTTCTGAAGCGAGACGCA+CGG 0.568554 3_1:+72402940 Msa0373400:CDS
GGAAGAACCACCACCGAAAG+CGG 0.569387 3_1:-72398667 None:intergenic
TCCAGTTCCATTCTCACTAG+CGG 0.572002 3_1:+72398866 Msa0373400:CDS
TGAAGATGGGGTCCCGAAGA+GGG 0.572735 3_1:-72398538 None:intergenic
TTCAGCATACATGGTTAGCA+AGG 0.574227 3_1:+72403216 Msa0373400:three_prime_UTR
GCTGAACCCTTCAAGAATGT+AGG 0.576573 3_1:-72403199 None:intergenic
TGAAGATTGACCGCCGAACA+TGG 0.577493 3_1:-72398511 None:intergenic
ATTGAAGGTGATGAGAATAG+TGG 0.583298 3_1:+72402415 Msa0373400:intron
CAAAAGCGGGAGTTGAAGAA+GGG 0.585231 3_1:-72398629 None:intergenic
GTAGAAGAAGCACCAAAAGC+GGG 0.586298 3_1:-72398642 None:intergenic
TCTTCTACACCCGCTTTCGG+TGG 0.586639 3_1:+72398657 Msa0373400:CDS
ACGGGATATGGAGATTATGA+TGG 0.590444 3_1:+72402959 Msa0373400:CDS
TATGGAGATTATGATGGCTG+AGG 0.590797 3_1:+72402965 Msa0373400:CDS
ATGGATGCCATAGCAAGACT+TGG 0.599180 3_1:+72402915 Msa0373400:CDS
AGCAAGGGTATATTTGTCGG+AGG 0.606225 3_1:+72403232 Msa0373400:three_prime_UTR
ATGGACAAATTACAAACCAA+AGG 0.608304 3_1:-72403063 None:intergenic
CAGGCTTCACCCTAAACTGT+GGG 0.612681 3_1:-72399698 None:intergenic
ATTATGATGGCTGAGGACAT+GGG 0.618742 3_1:+72402972 Msa0373400:CDS
CTTACATCTGAAACACCAGC+AGG 0.625885 3_1:-72399717 None:intergenic
CCGTATTCCATTAACAAAAG+GGG 0.630334 3_1:+72402460 Msa0373400:CDS
AAACCTTAAAAGCGTATTTG+GGG 0.630724 3_1:-72399033 None:intergenic
TGGAGCGGAATTATCTAGAA+GGG 0.631061 3_1:+72402605 Msa0373400:CDS
GGTTGTTGTTGAGCAGAGAA+CGG 0.632380 3_1:-72398702 None:intergenic
TCAGCTGAAAGGATCTGGAG+CGG 0.638114 3_1:+72402590 Msa0373400:intron
CCGCCGAACATGGTGGTGTG+CGG 0.642470 3_1:-72398501 None:intergenic
TGTAGAAGAAGCACCAAAAG+CGG 0.643383 3_1:-72398643 None:intergenic
GCAGGCTTCACCCTAAACTG+TGG 0.646030 3_1:-72399699 None:intergenic
GAAGGTGATGAGAATAGTGG+AGG 0.650075 3_1:+72402418 Msa0373400:intron
ACTCGGCGTATCTCGTGTCA+AGG 0.651033 3_1:+72402638 Msa0373400:CDS
AGAAGGGTACAAAATCTACT+CGG 0.654843 3_1:+72402621 Msa0373400:CDS
TGGGTTTCAGAATTCTACGC+CGG 0.655438 3_1:+72398785 Msa0373400:CDS
CCGCACACCACCATGTTCGG+CGG 0.655972 3_1:+72398501 Msa0373400:exon
AAGTCTGGCTGACCTGCAGG+AGG 0.657558 3_1:+72402722 Msa0373400:CDS
TCAGCATACATGGTTAGCAA+GGG 0.662415 3_1:+72403217 Msa0373400:three_prime_UTR
TCATGTGGGCGGAAGCTATG+GGG 0.675093 3_1:+72399835 Msa0373400:CDS
TTTATGTTGCTAGATCATGT+GGG 0.694092 3_1:+72399821 Msa0373400:intron
ATGTTGCTAGATCATGTGGG+CGG 0.703435 3_1:+72399824 Msa0373400:intron
AAAAGCGGGAGTTGAAGAAG+GGG 0.703806 3_1:-72398628 None:intergenic
AGAAGGGGTACCGAAGCCTG+GGG 0.706896 3_1:-72398613 None:intergenic
AGTGCCGAATGCTGAAGATG+GGG 0.747720 3_1:-72398550 None:intergenic
AGATTGACCGCCGAACATGG+TGG 0.846340 3_1:-72398508 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTCATTTAAAATTTATT+TGG + chr3_1:72399070-72399089 Msa0373400:intron 10.0%
!!! TAAAATTTATTTGGAATTAT+AGG + chr3_1:72399079-72399098 Msa0373400:intron 10.0%
!!! AAAATTTATTTGGAATTATA+GGG + chr3_1:72399080-72399099 Msa0373400:intron 10.0%
!!! AGTTTAATTTTTAGTAAAAT+AGG + chr3_1:72400358-72400377 Msa0373400:intron 10.0%
!!! GTTTAATTTTTAGTAAAATA+GGG + chr3_1:72400359-72400378 Msa0373400:intron 10.0%
!!! TTTAATTTTTAGTAAAATAG+GGG + chr3_1:72400360-72400379 Msa0373400:intron 10.0%
!!! AAACTAGTTGATTAAATTTT+TGG + chr3_1:72399311-72399330 Msa0373400:intron 15.0%
!!! AGCTTATAACTTATTTTTAT+TGG - chr3_1:72399511-72399530 None:intergenic 15.0%
!!! TTTTTTATAGTGTTTAAAAC+AGG + chr3_1:72400013-72400032 Msa0373400:intron 15.0%
!!! TTTTTATAGTGTTTAAAACA+GGG + chr3_1:72400014-72400033 Msa0373400:intron 15.0%
!!! AATATTTGGAAATTTTATGA+TGG - chr3_1:72400154-72400173 None:intergenic 15.0%
!! ATCATAAAATTTCCAAATAT+TGG + chr3_1:72400153-72400172 Msa0373400:intron 15.0%
!! TGTTTATAATAGATTTAGAA+TGG - chr3_1:72400439-72400458 None:intergenic 15.0%
!! ATTTATTCTAACAAGAAAAT+GGG - chr3_1:72400801-72400820 None:intergenic 15.0%
!! TATTTATTCTAACAAGAAAA+TGG - chr3_1:72400802-72400821 None:intergenic 15.0%
!! TTAATTAACAAGTTAAAACA+AGG + chr3_1:72400844-72400863 Msa0373400:intron 15.0%
!! CTAAAACAACTAAAATTAAT+AGG - chr3_1:72401644-72401663 None:intergenic 15.0%
!! TATTGATCTAATACTAAAAT+TGG - chr3_1:72401858-72401877 None:intergenic 15.0%
!!! TTATCTTTGTTTTTCCAATT+AGG + chr3_1:72398976-72398995 Msa0373400:intron 20.0%
!! TTTGGATAAATAGCTTAATT+AGG - chr3_1:72399126-72399145 None:intergenic 20.0%
!!! TTGATTAAATTTTTGGTGTT+TGG + chr3_1:72399318-72399337 Msa0373400:intron 20.0%
!! AGAAAATAAAACGTATTAGA+TGG - chr3_1:72400052-72400071 None:intergenic 20.0%
!!! TTATTTTCTTTACCAATTTG+TGG + chr3_1:72400063-72400082 Msa0373400:intron 20.0%
!! AAAATTTCCAAATATTGGTA+TGG + chr3_1:72400158-72400177 Msa0373400:intron 20.0%
!! ATTATAGCAATGAATTTGAT+AGG + chr3_1:72400243-72400262 Msa0373400:intron 20.0%
!! TATTTAACATCTAAATTGCA+AGG - chr3_1:72400468-72400487 None:intergenic 20.0%
!! AGAAATGTCATGTAATTTAT+AGG - chr3_1:72401362-72401381 None:intergenic 20.0%
!!! ACATTTTAAATGAAGTTGAT+CGG + chr3_1:72401403-72401422 Msa0373400:intron 20.0%
!! TTATTAATATAGCATGTGTT+TGG + chr3_1:72401705-72401724 Msa0373400:intron 20.0%
!! TATTAATATAGCATGTGTTT+GGG + chr3_1:72401706-72401725 Msa0373400:intron 20.0%
!! TATATTGAAATATGCCATAA+TGG + chr3_1:72401913-72401932 Msa0373400:intron 20.0%
!! AATTAGAAACTGTTGAAATA+CGG + chr3_1:72402017-72402036 Msa0373400:intron 20.0%
!! AAAACCTTAAAAGCGTATTT+GGG - chr3_1:72399037-72399056 None:intergenic 25.0%
! ATGATAAATTAGGTTCTGTT+TGG - chr3_1:72399144-72399163 None:intergenic 25.0%
! GAAACAGCTTATGATAAATT+AGG - chr3_1:72399154-72399173 None:intergenic 25.0%
!! AGACAATTTAAGACAGATTA+TGG - chr3_1:72399176-72399195 None:intergenic 25.0%
! AGCAGAAAAAATTTACCTTA+AGG - chr3_1:72399941-72399960 None:intergenic 25.0%
! AAAGTTTAATTCCGATGTTT+GGG - chr3_1:72400123-72400142 None:intergenic 25.0%
! AAAAGTTTAATTCCGATGTT+TGG - chr3_1:72400124-72400143 None:intergenic 25.0%
! AAAACTACCATACCAATATT+TGG - chr3_1:72400168-72400187 None:intergenic 25.0%
! TAATGATAGGTGAAATTGAA+TGG - chr3_1:72400194-72400213 None:intergenic 25.0%
! TAGATATCCAAACAGAAAAT+AGG + chr3_1:72400212-72400231 Msa0373400:intron 25.0%
!! CTTGAATATACGATTTTAGA+AGG + chr3_1:72400291-72400310 Msa0373400:intron 25.0%
!!! TATACGATTTTAGAAGGAAA+TGG + chr3_1:72400297-72400316 Msa0373400:intron 25.0%
! TAAAATCAAGTTCAAATGTC+TGG - chr3_1:72400552-72400571 None:intergenic 25.0%
!! GTTCTATTTTCAAAACAAAC+TGG + chr3_1:72400697-72400716 Msa0373400:intron 25.0%
! TTAAAACAAGGCATAACATA+TGG + chr3_1:72400856-72400875 Msa0373400:intron 25.0%
! TAAAACAAGGCATAACATAT+GGG + chr3_1:72400857-72400876 Msa0373400:intron 25.0%
! TGTGAAAAGTAGAACAAAAT+AGG + chr3_1:72400901-72400920 Msa0373400:intron 25.0%
! GTCAATTCTAAGTAAAATGT+TGG + chr3_1:72400942-72400961 Msa0373400:intron 25.0%
!!! ACTTAAGCTGTTTTTGAAAA+GGG - chr3_1:72401064-72401083 None:intergenic 25.0%
!!! AACTTAAGCTGTTTTTGAAA+AGG - chr3_1:72401065-72401084 None:intergenic 25.0%
!! GAAATATATGCTTTTCTGAA+AGG - chr3_1:72401118-72401137 None:intergenic 25.0%
! ATAATGATGTGGAAATGAAA+GGG - chr3_1:72401171-72401190 None:intergenic 25.0%
!!! TTTTTTCTCAACTTTTGTTG+TGG - chr3_1:72401535-72401554 None:intergenic 25.0%
! AAACGAGAGAAATATGATAT+GGG + chr3_1:72401664-72401683 Msa0373400:intron 25.0%
!!! AATAACCATGCCTTTTAATT+TGG - chr3_1:72401690-72401709 None:intergenic 25.0%
! ATGGGAATAATATATGCTAA+AGG + chr3_1:72401791-72401810 Msa0373400:intron 25.0%
! ATATGCTAAAGGATAAGTTA+AGG + chr3_1:72401802-72401821 Msa0373400:intron 25.0%
! AATATATACAACTCTTCACT+GGG + chr3_1:72401886-72401905 Msa0373400:intron 25.0%
! ATTAGAAACTGTTGAAATAC+GGG + chr3_1:72402018-72402037 Msa0373400:intron 25.0%
!!! TACCATTTTAACATTGCTTT+GGG - chr3_1:72402126-72402145 None:intergenic 25.0%
!!! ATACCATTTTAACATTGCTT+TGG - chr3_1:72402127-72402146 None:intergenic 25.0%
! ATATGATTAGACATAATGAG+GGG - chr3_1:72402389-72402408 None:intergenic 25.0%
! CATATGATTAGACATAATGA+GGG - chr3_1:72402390-72402409 None:intergenic 25.0%
! ACATATGATTAGACATAATG+AGG - chr3_1:72402391-72402410 None:intergenic 25.0%
! TATTACCAAATCATGATACA+TGG - chr3_1:72403085-72403104 None:intergenic 25.0%
! TTCTGAAAGCAAAAAGCAAA+AGG - chr3_1:72398430-72398449 None:intergenic 30.0%
GTCAATTGAGAATTTGGAAA+CGG - chr3_1:72398825-72398844 None:intergenic 30.0%
TGAGTAGTCAATTGAGAATT+TGG - chr3_1:72398831-72398850 None:intergenic 30.0%
TTCTCAATTGACTACTCAAA+TGG + chr3_1:72398833-72398852 Msa0373400:CDS 30.0%
GATTCTTATAAAGAAGATGC+TGG + chr3_1:72399007-72399026 Msa0373400:CDS 30.0%
! AAACCTTAAAAGCGTATTTG+GGG - chr3_1:72399036-72399055 None:intergenic 30.0%
! GAAAACCTTAAAAGCGTATT+TGG - chr3_1:72399038-72399057 None:intergenic 30.0%
TTTAAATGAAGAAGACAGAG+AGG - chr3_1:72399063-72399082 None:intergenic 30.0%
! TATTTGGAATTATAGGGTCA+TGG + chr3_1:72399086-72399105 Msa0373400:intron 30.0%
AATTATAGGGTCATGGATAT+AGG + chr3_1:72399093-72399112 Msa0373400:intron 30.0%
ATTATAGGGTCATGGATATA+GGG + chr3_1:72399094-72399113 Msa0373400:intron 30.0%
GTCTAAGTTACTGTTTGAAT+CGG - chr3_1:72399223-72399242 None:intergenic 30.0%
GCTTATAAGTTAACTTACAG+CGG + chr3_1:72399268-72399287 Msa0373400:intron 30.0%
ATAAGCTTGTGAGAAAATGA+CGG + chr3_1:72399524-72399543 Msa0373400:intron 30.0%
ATCAGCTCATATGACTAAAA+AGG - chr3_1:72399563-72399582 None:intergenic 30.0%
ATGAGAAAACATGAAAGCTA+CGG - chr3_1:72399630-72399649 None:intergenic 30.0%
TTTATGTTGCTAGATCATGT+GGG + chr3_1:72399821-72399840 Msa0373400:intron 30.0%
!! TTAAAACCTTGAACTTGTTG+TGG - chr3_1:72399903-72399922 None:intergenic 30.0%
! ACAACAAGTTCAAGGTTTTA+AGG + chr3_1:72399902-72399921 Msa0373400:CDS 30.0%
! AAAATTTACCTTAAGGCGTT+GGG - chr3_1:72399934-72399953 None:intergenic 30.0%
AAAAATTTACCTTAAGGCGT+TGG - chr3_1:72399935-72399954 None:intergenic 30.0%
TATGTTTGGATTGATTGGAA+GGG + chr3_1:72399965-72399984 Msa0373400:intron 30.0%
! TATAGTGTTTAAAACAGGGT+TGG + chr3_1:72400018-72400037 Msa0373400:intron 30.0%
CTGTTTGGATATCTAATGAT+AGG - chr3_1:72400207-72400226 None:intergenic 30.0%
GAATTTGATAGGTTAACTAC+TGG + chr3_1:72400254-72400273 Msa0373400:intron 30.0%
AAGGAAATGGATGTTCATAT+GGG + chr3_1:72400310-72400329 Msa0373400:intron 30.0%
AACATCTAAATTGCAAGGTA+AGG - chr3_1:72400463-72400482 None:intergenic 30.0%
TTTCAAAACAAACTGGTGAT+AGG + chr3_1:72400704-72400723 Msa0373400:intron 30.0%
ATATATATATAGACGTGCGT+CGG + chr3_1:72400743-72400762 Msa0373400:intron 30.0%
!!! TATGGGTTTTGTTTCATGTT+TGG + chr3_1:72400874-72400893 Msa0373400:intron 30.0%
AAAAAATGAAACTGAACAGC+TGG - chr3_1:72400989-72401008 None:intergenic 30.0%
! AAAAAGGTGTAGGTAACATT+TGG - chr3_1:72401019-72401038 None:intergenic 30.0%
!! TTACCTACACCTTTTTCATT+TGG + chr3_1:72401023-72401042 Msa0373400:intron 30.0%
!! AGTTTTGGTCCAAATGAAAA+AGG - chr3_1:72401035-72401054 None:intergenic 30.0%
!! TCAAAAACAGCTTAAGTTGA+TGG + chr3_1:72401067-72401086 Msa0373400:intron 30.0%
TAATGATGTGGAAATGAAAG+GGG - chr3_1:72401170-72401189 None:intergenic 30.0%
CATAATGATGTGGAAATGAA+AGG - chr3_1:72401172-72401191 None:intergenic 30.0%
TGATTGATTGCATAATGATG+TGG - chr3_1:72401182-72401201 None:intergenic 30.0%
! TGTAAATCCCCATTTTGTAA+CGG + chr3_1:72401279-72401298 Msa0373400:intron 30.0%
! TGACATTTGATGATAGAAAG+AGG + chr3_1:72401569-72401588 Msa0373400:intron 30.0%
! ATTTGATGATAGAAAGAGGT+AGG + chr3_1:72401573-72401592 Msa0373400:intron 30.0%
GAAACGAGAGAAATATGATA+TGG + chr3_1:72401663-72401682 Msa0373400:intron 30.0%
ATGATATGGGCCAAATTAAA+AGG + chr3_1:72401677-72401696 Msa0373400:intron 30.0%
CATATATTATTCCCATTCGT+AGG - chr3_1:72401787-72401806 None:intergenic 30.0%
GAATATATACAACTCTTCAC+TGG + chr3_1:72401885-72401904 Msa0373400:intron 30.0%
TGAGTAAAAATGTGTCATCA+AGG - chr3_1:72402044-72402063 None:intergenic 30.0%
AACCCAAAGCAATGTTAAAA+TGG + chr3_1:72402121-72402140 Msa0373400:CDS 30.0%
GATAGGTTAGCATAAAAAAC+CGG - chr3_1:72402191-72402210 None:intergenic 30.0%
TATCTGCTTGAAAATGTCTT+TGG - chr3_1:72402243-72402262 None:intergenic 30.0%
!! AGCAACGTATTTTAAGAGTA+TGG + chr3_1:72402308-72402327 Msa0373400:intron 30.0%
TAATCATATGTCGTGATTGA+AGG + chr3_1:72402400-72402419 Msa0373400:intron 30.0%
! AAAATGTCTTTTCAGCTGAA+AGG + chr3_1:72402579-72402598 Msa0373400:intron 30.0%
TAAACCTCATATTGCCATAT+TGG - chr3_1:72402758-72402777 None:intergenic 30.0%
GAAGAACTCAATGTTAATGA+TGG + chr3_1:72402859-72402878 Msa0373400:intron 30.0%
! CATTAAATGTCCATTTTCTG+AGG - chr3_1:72403000-72403019 None:intergenic 30.0%
! TCTTACTTCGTATTTTCCTT+TGG + chr3_1:72403047-72403066 Msa0373400:three_prime_UTR 30.0%
ATGGACAAATTACAAACCAA+AGG - chr3_1:72403066-72403085 None:intergenic 30.0%
TTTGTCCATGTATCATGATT+TGG + chr3_1:72403077-72403096 Msa0373400:three_prime_UTR 30.0%
GAATGTAGGAAGATTCAAAT+AGG - chr3_1:72403188-72403207 None:intergenic 30.0%
AATCTTCCTACATTCTTGAA+GGG + chr3_1:72403193-72403212 Msa0373400:three_prime_UTR 30.0%
!! AGGATTTTGGAAAAAAGTGA+TGG + chr3_1:72403252-72403271 Msa0373400:three_prime_UTR 30.0%
TTTCAACTATCACCTTCTAC+TGG + chr3_1:72398759-72398778 Msa0373400:CDS 35.0%
!!! TATCACCTTCTACTGGTTTT+GGG + chr3_1:72398766-72398785 Msa0373400:CDS 35.0%
AGAATCAAGAATCGCCTAAT+TGG - chr3_1:72398993-72399012 None:intergenic 35.0%
! AAACCCCAAATACGCTTTTA+AGG + chr3_1:72399030-72399049 Msa0373400:CDS 35.0%
AGAAAATGACGGTTACCAAA+CGG + chr3_1:72399535-72399554 Msa0373400:intron 35.0%
ATGACTAAAAAGGATCCGTT+TGG - chr3_1:72399553-72399572 None:intergenic 35.0%
! GCTTTCATGTTTTCTCATGT+TGG + chr3_1:72399632-72399651 Msa0373400:intron 35.0%
! TTTTTCTTATGTCATGCCAC+TGG + chr3_1:72399781-72399800 Msa0373400:intron 35.0%
GTTTATGTTGCTAGATCATG+TGG + chr3_1:72399820-72399839 Msa0373400:intron 35.0%
! TTTTTCTGCTCCACTATGTT+TGG + chr3_1:72399951-72399970 Msa0373400:intron 35.0%
TCCACTATGTTTGGATTGAT+TGG + chr3_1:72399960-72399979 Msa0373400:intron 35.0%
TCCAATCAATCCAAACATAG+TGG - chr3_1:72399964-72399983 None:intergenic 35.0%
CTATGTTTGGATTGATTGGA+AGG + chr3_1:72399964-72399983 Msa0373400:intron 35.0%
ATGTTTGGATTGATTGGAAG+GGG + chr3_1:72399966-72399985 Msa0373400:intron 35.0%
TCTTTACCAATTTGTGGCTA+TGG + chr3_1:72400069-72400088 Msa0373400:intron 35.0%
! TACGATGCCTATTTTCTGTT+TGG - chr3_1:72400222-72400241 None:intergenic 35.0%
GAAGGAAATGGATGTTCATA+TGG + chr3_1:72400309-72400328 Msa0373400:intron 35.0%
AGGAAATGGATGTTCATATG+GGG + chr3_1:72400311-72400330 Msa0373400:intron 35.0%
TTAGTAAAATAGGGGAAACC+TGG + chr3_1:72400368-72400387 Msa0373400:intron 35.0%
CTCTGCTTTAGTATAAACCA+TGG - chr3_1:72400620-72400639 None:intergenic 35.0%
! TTGCTGATGTCAAGATTTTG+TGG + chr3_1:72400647-72400666 Msa0373400:intron 35.0%
! TGAAAAGGGAGAATGAGTTT+TGG - chr3_1:72401050-72401069 None:intergenic 35.0%
AATGATGTGGAAATGAAAGG+GGG - chr3_1:72401169-72401188 None:intergenic 35.0%
! AACAGCTACTCTGTGTTATT+AGG - chr3_1:72401244-72401263 None:intergenic 35.0%
AATGCATCCGTTACAAAATG+GGG - chr3_1:72401289-72401308 None:intergenic 35.0%
CAATGCATCCGTTACAAAAT+GGG - chr3_1:72401290-72401309 None:intergenic 35.0%
TTCTACTCTAGTCTCTGTTA+TGG + chr3_1:72401378-72401397 Msa0373400:intron 35.0%
GACTAACATACCAATCTTTG+CGG - chr3_1:72401479-72401498 None:intergenic 35.0%
!! TTTCTCAACTTTTGTTGTGG+CGG - chr3_1:72401532-72401551 None:intergenic 35.0%
AGTCATGTTCCTAAAAGCTT+TGG - chr3_1:72401832-72401851 None:intergenic 35.0%
! TTTTTGCACCAAATACTGAC+TGG - chr3_1:72401968-72401987 None:intergenic 35.0%
TCCCAAGAAAAATGTTGAAC+CGG + chr3_1:72402163-72402182 Msa0373400:intron 35.0%
!! ACCGGTTCAACATTTTTCTT+GGG - chr3_1:72402167-72402186 None:intergenic 35.0%
!!! TACCGGTTCAACATTTTTCT+TGG - chr3_1:72402168-72402187 None:intergenic 35.0%
TTAGCATAAAAAACCGGTAC+CGG - chr3_1:72402185-72402204 None:intergenic 35.0%
CATCAGAGAATCGAAAAGAT+AGG - chr3_1:72402208-72402227 None:intergenic 35.0%
! CTATCTTTTCGATTCTCTGA+TGG + chr3_1:72402206-72402225 Msa0373400:intron 35.0%
TGTTTCAGTCTTTGAATCCA+AGG - chr3_1:72402271-72402290 None:intergenic 35.0%
ATTGAAGGTGATGAGAATAG+TGG + chr3_1:72402415-72402434 Msa0373400:intron 35.0%
TGCCGTATTCCATTAACAAA+AGG + chr3_1:72402458-72402477 Msa0373400:CDS 35.0%
GCCGTATTCCATTAACAAAA+GGG + chr3_1:72402459-72402478 Msa0373400:CDS 35.0%
! CCCCTTTTGTTAATGGAATA+CGG - chr3_1:72402463-72402482 None:intergenic 35.0%
CCGTATTCCATTAACAAAAG+GGG + chr3_1:72402460-72402479 Msa0373400:CDS 35.0%
TTCTACCTGTCTAGTTATTG+TGG - chr3_1:72402510-72402529 None:intergenic 35.0%
! AGAAGGGTACAAAATCTACT+CGG + chr3_1:72402621-72402640 Msa0373400:CDS 35.0%
! AAGGCTAATAGCAATGGATT+TGG + chr3_1:72402657-72402676 Msa0373400:CDS 35.0%
! CAGACTTTGATCGTGAATTT+TGG - chr3_1:72402709-72402728 None:intergenic 35.0%
CAAAATTCACGATCAAAGTC+TGG + chr3_1:72402707-72402726 Msa0373400:CDS 35.0%
GAGGTAAGATTCTACCAATA+TGG + chr3_1:72402741-72402760 Msa0373400:intron 35.0%
TCTACCAATATGGCAATATG+AGG + chr3_1:72402751-72402770 Msa0373400:intron 35.0%
! ATAGTGAGCACAGTAGTTTT+AGG + chr3_1:72403104-72403123 Msa0373400:three_prime_UTR 35.0%
!! TAGTGAGCACAGTAGTTTTA+GGG + chr3_1:72403105-72403124 Msa0373400:three_prime_UTR 35.0%
GAATCTTCCTACATTCTTGA+AGG + chr3_1:72403192-72403211 Msa0373400:three_prime_UTR 35.0%
! GTTAGCAAGGGTATATTTGT+CGG + chr3_1:72403229-72403248 Msa0373400:three_prime_UTR 35.0%
! GTATATTTGTCGGAGGATTT+TGG + chr3_1:72403239-72403258 Msa0373400:three_prime_UTR 35.0%
GCGCTTAAATTTAGCAGTCT+AGG - chr3_1:72398406-72398425 None:intergenic 40.0%
CAATCTTCATCTTCCCTCTT+CGG + chr3_1:72398525-72398544 Msa0373400:CDS 40.0%
AATCTTCATCTTCCCTCTTC+GGG + chr3_1:72398526-72398545 Msa0373400:CDS 40.0%
!! TGTAGAAGAAGCACCAAAAG+CGG - chr3_1:72398646-72398665 None:intergenic 40.0%
!!! CTATCACCTTCTACTGGTTT+TGG + chr3_1:72398765-72398784 Msa0373400:CDS 40.0%
TGAAACCCAAAACCAGTAGA+AGG - chr3_1:72398774-72398793 None:intergenic 40.0%
ATGAAAGCTACGGTTCTGTT+TGG - chr3_1:72399620-72399639 None:intergenic 40.0%
TGTAACAGACCCACAGTTTA+GGG + chr3_1:72399689-72399708 Msa0373400:CDS 40.0%
TACCAACTAGAATGCTCAGT+GGG - chr3_1:72399756-72399775 None:intergenic 40.0%
!! TCATGCCACTGGCTAATTTT+GGG + chr3_1:72399792-72399811 Msa0373400:intron 40.0%
TATTCCCCAAAATTAGCCAG+TGG - chr3_1:72399800-72399819 None:intergenic 40.0%
GTGCATAGAAAGGACTCAAT+TGG + chr3_1:72399988-72400007 Msa0373400:intron 40.0%
AATGGATGTTCATATGGGGT+TGG + chr3_1:72400315-72400334 Msa0373400:intron 40.0%
ATGGATGTTCATATGGGGTT+GGG + chr3_1:72400316-72400335 Msa0373400:intron 40.0%
AACTGAGCTTCCATGATAGT+TGG + chr3_1:72400394-72400413 Msa0373400:intron 40.0%
TTCCATGATAGTTGGATCCA+AGG + chr3_1:72400402-72400421 Msa0373400:intron 40.0%
TTCCTTGGATCCAACTATCA+TGG - chr3_1:72400407-72400426 None:intergenic 40.0%
! GAATGGATTTGAGTCTTCCT+TGG - chr3_1:72400422-72400441 None:intergenic 40.0%
GGTGATAGGAAGTGATATGA+AGG + chr3_1:72400718-72400737 Msa0373400:intron 40.0%
TAGGACAGACGTTGAGAAAA+AGG + chr3_1:72400920-72400939 Msa0373400:intron 40.0%
! GGTCCAAATGAAAAAGGTGT+AGG - chr3_1:72401029-72401048 None:intergenic 40.0%
CCAATGCATCCGTTACAAAA+TGG - chr3_1:72401291-72401310 None:intergenic 40.0%
!!! CCATTTTGTAACGGATGCAT+TGG + chr3_1:72401288-72401307 Msa0373400:intron 40.0%
!! TGTAACGGATGCATTGGAAA+AGG + chr3_1:72401294-72401313 Msa0373400:intron 40.0%
ATGATAGAAAGAGGTAGGAG+TGG + chr3_1:72401578-72401597 Msa0373400:intron 40.0%
ATGGGCCAAATTAAAAGGCA+TGG + chr3_1:72401682-72401701 Msa0373400:intron 40.0%
! ATAGCATGTGTTTGGGATCA+TGG + chr3_1:72401713-72401732 Msa0373400:intron 40.0%
AGAAGGACAATGCACAAACT+TGG - chr3_1:72401762-72401781 None:intergenic 40.0%
TTGTCCTTCTAACCTACGAA+TGG + chr3_1:72401772-72401791 Msa0373400:intron 40.0%
TGTCCTTCTAACCTACGAAT+GGG + chr3_1:72401773-72401792 Msa0373400:intron 40.0%
ATTCCCATTCGTAGGTTAGA+AGG - chr3_1:72401779-72401798 None:intergenic 40.0%
! TAAGGAGAGCCAAAGCTTTT+AGG + chr3_1:72401820-72401839 Msa0373400:intron 40.0%
ATATACAACTCTTCACTGGG+TGG + chr3_1:72401889-72401908 Msa0373400:intron 40.0%
TGTATCCACCAGTCAGTATT+TGG + chr3_1:72401957-72401976 Msa0373400:intron 40.0%
CAGAGACAATGACTTCATCT+TGG - chr3_1:72402082-72402101 None:intergenic 40.0%
! AACATTTTTCTTGGGAGAGC+AGG - chr3_1:72402159-72402178 None:intergenic 40.0%
GAAAAATGTTGAACCGGTAC+CGG + chr3_1:72402169-72402188 Msa0373400:intron 40.0%
TTCAAGCAGATACTCTTCCT+TGG + chr3_1:72402251-72402270 Msa0373400:CDS 40.0%
! TCAGCTTCCCCTTTTGTTAA+TGG - chr3_1:72402470-72402489 None:intergenic 40.0%
ACTAGCCACAATAACTAGAC+AGG + chr3_1:72402502-72402521 Msa0373400:CDS 40.0%
! TCTTTTCAGCTGAAAGGATC+TGG + chr3_1:72402585-72402604 Msa0373400:intron 40.0%
TGGAGCGGAATTATCTAGAA+GGG + chr3_1:72402605-72402624 Msa0373400:CDS 40.0%
ACGGGATATGGAGATTATGA+TGG + chr3_1:72402959-72402978 Msa0373400:CDS 40.0%
TATGGAGATTATGATGGCTG+AGG + chr3_1:72402965-72402984 Msa0373400:CDS 40.0%
ATTATGATGGCTGAGGACAT+GGG + chr3_1:72402972-72402991 Msa0373400:CDS 40.0%
TTCAGCATACATGGTTAGCA+AGG + chr3_1:72403216-72403235 Msa0373400:three_prime_UTR 40.0%
TCAGCATACATGGTTAGCAA+GGG + chr3_1:72403217-72403236 Msa0373400:three_prime_UTR 40.0%
GAAAAAAGTGATGGCATGTG+AGG + chr3_1:72403261-72403280 Msa0373400:three_prime_UTR 40.0%
!! GAAGAAGGAGTACCGAAAGT+TGG - chr3_1:72398576-72398595 None:intergenic 45.0%
! CTGAAAGCTGGTGTTGAAGA+AGG - chr3_1:72398591-72398610 None:intergenic 45.0%
AAAAGCGGGAGTTGAAGAAG+GGG - chr3_1:72398631-72398650 None:intergenic 45.0%
CAAAAGCGGGAGTTGAAGAA+GGG - chr3_1:72398632-72398651 None:intergenic 45.0%
!! GTAGAAGAAGCACCAAAAGC+GGG - chr3_1:72398645-72398664 None:intergenic 45.0%
! AGAGAACGGTGTTGAGAAGA+GGG - chr3_1:72398691-72398710 None:intergenic 45.0%
! GGTTGTTGTTGAGCAGAGAA+CGG - chr3_1:72398705-72398724 None:intergenic 45.0%
TTGTTGCTGCTGCTGTTGTT+GGG - chr3_1:72398727-72398746 None:intergenic 45.0%
TGGGTTTCAGAATTCTACGC+CGG + chr3_1:72398785-72398804 Msa0373400:CDS 45.0%
TGAGAATTTGGAAACGGCGA+AGG - chr3_1:72398819-72398838 None:intergenic 45.0%
TCCAGTTCCATTCTCACTAG+CGG + chr3_1:72398866-72398885 Msa0373400:CDS 45.0%
GTGTAACAGACCCACAGTTT+AGG + chr3_1:72399688-72399707 Msa0373400:CDS 45.0%
! CTTACATCTGAAACACCAGC+AGG - chr3_1:72399720-72399739 None:intergenic 45.0%
TTCCCACTGAGCATTCTAGT+TGG + chr3_1:72399751-72399770 Msa0373400:intron 45.0%
CTACCAACTAGAATGCTCAG+TGG - chr3_1:72399757-72399776 None:intergenic 45.0%
!! GTCATGCCACTGGCTAATTT+TGG + chr3_1:72399791-72399810 Msa0373400:intron 45.0%
!! CATGCCACTGGCTAATTTTG+GGG + chr3_1:72399793-72399812 Msa0373400:intron 45.0%
ATGTTGCTAGATCATGTGGG+CGG + chr3_1:72399824-72399843 Msa0373400:intron 45.0%
! GTGCTGATAGAGAACGTCTT+TGG + chr3_1:72399877-72399896 Msa0373400:CDS 45.0%
CTTTGGCCACAACAAGTTCA+AGG + chr3_1:72399894-72399913 Msa0373400:CDS 45.0%
! ATTGGAAGGGGTGCATAGAA+AGG + chr3_1:72399978-72399997 Msa0373400:intron 45.0%
GTAGCTCCATAGCCACAAAT+TGG - chr3_1:72400078-72400097 None:intergenic 45.0%
AATTCCGATGTTTGGGAGCA+CGG - chr3_1:72400116-72400135 None:intergenic 45.0%
! TCATATGGGGTTGGGCATTT+TGG + chr3_1:72400324-72400343 Msa0373400:intron 45.0%
CAAATGTCTGGCATCATTGC+AGG - chr3_1:72400540-72400559 None:intergenic 45.0%
TTCTGCTCATCAGATGTCCA+TGG + chr3_1:72400600-72400619 Msa0373400:intron 45.0%
ACGGATGCATTGGAAAAGGA+AGG + chr3_1:72401298-72401317 Msa0373400:intron 45.0%
TCAAACAATCCCCTCCACAA+AGG - chr3_1:72401437-72401456 None:intergenic 45.0%
TGTGGAGGGGATTGTTTGAT+TGG + chr3_1:72401438-72401457 Msa0373400:intron 45.0%
AACTTGGATGTGCGTTAGGT+GGG - chr3_1:72401746-72401765 None:intergenic 45.0%
AAACTTGGATGTGCGTTAGG+TGG - chr3_1:72401747-72401766 None:intergenic 45.0%
CACAAACTTGGATGTGCGTT+AGG - chr3_1:72401750-72401769 None:intergenic 45.0%
! GCAGCAGTCTTTTGCCATTA+TGG - chr3_1:72401930-72401949 None:intergenic 45.0%
! TTGCACCAAATACTGACTGG+TGG - chr3_1:72401965-72401984 None:intergenic 45.0%
GAAGGTGATGAGAATAGTGG+AGG + chr3_1:72402418-72402437 Msa0373400:intron 45.0%
CTACTTCCTGTTCTGTTGCT+TGG + chr3_1:72402542-72402561 Msa0373400:intron 45.0%
! TTCCTGTTCTGTTGCTTGGA+TGG + chr3_1:72402546-72402565 Msa0373400:intron 45.0%
TTCCATCCAAGCAACAGAAC+AGG - chr3_1:72402551-72402570 None:intergenic 45.0%
CTGGAGCGGAATTATCTAGA+AGG + chr3_1:72402604-72402623 Msa0373400:CDS 45.0%
CGTGTCAAGGCTAATAGCAA+TGG + chr3_1:72402651-72402670 Msa0373400:CDS 45.0%
TGGTAACTCAGCTCATCTTC+TGG + chr3_1:72402677-72402696 Msa0373400:CDS 45.0%
GGTAACTCAGCTCATCTTCT+GGG + chr3_1:72402678-72402697 Msa0373400:CDS 45.0%
ATGGTCTACTTTGCGAGAAC+AGG + chr3_1:72402878-72402897 Msa0373400:intron 45.0%
ATGGATGCCATAGCAAGACT+TGG + chr3_1:72402915-72402934 Msa0373400:CDS 45.0%
AACACTGCCAAGTCTTGCTA+TGG - chr3_1:72402925-72402944 None:intergenic 45.0%
GATTATGATGGCTGAGGACA+TGG + chr3_1:72402971-72402990 Msa0373400:CDS 45.0%
GACATGGGAACCTCAGAAAA+TGG + chr3_1:72402987-72403006 Msa0373400:CDS 45.0%
! AGGGACACTTTTCGTGTAGT+CGG + chr3_1:72403124-72403143 Msa0373400:three_prime_UTR 45.0%
TGACCCATTTGCGATGTTTG+TGG + chr3_1:72403162-72403181 Msa0373400:three_prime_UTR 45.0%
AGGCCACAAACATCGCAAAT+GGG - chr3_1:72403168-72403187 None:intergenic 45.0%
TAGGCCACAAACATCGCAAA+TGG - chr3_1:72403169-72403188 None:intergenic 45.0%
GCTGAACCCTTCAAGAATGT+AGG - chr3_1:72403202-72403221 None:intergenic 45.0%
CTTGAAGGGTTCAGCATACA+TGG + chr3_1:72403207-72403226 Msa0373400:three_prime_UTR 45.0%
! AGCAAGGGTATATTTGTCGG+AGG + chr3_1:72403232-72403251 Msa0373400:three_prime_UTR 45.0%
!! ATGTTAAATAATTATATAAA+TGG + chr3_1:72400478-72400497 Msa0373400:intron 5.0%
TGAAGATTGACCGCCGAACA+TGG - chr3_1:72398514-72398533 None:intergenic 50.0%
! AGTGCCGAATGCTGAAGATG+GGG - chr3_1:72398553-72398572 None:intergenic 50.0%
!! GAGTGCCGAATGCTGAAGAT+GGG - chr3_1:72398554-72398573 None:intergenic 50.0%
GCATTCGGCACTCCAACTTT+CGG + chr3_1:72398561-72398580 Msa0373400:CDS 50.0%
CCAAAAGCGGGAGTTGAAGA+AGG - chr3_1:72398633-72398652 None:intergenic 50.0%
! CCTTCTTCAACTCCCGCTTT+TGG + chr3_1:72398630-72398649 Msa0373400:CDS 50.0%
GCTTCTTCTACACCCGCTTT+CGG + chr3_1:72398654-72398673 Msa0373400:CDS 50.0%
! CAGAGAACGGTGTTGAGAAG+AGG - chr3_1:72398692-72398711 None:intergenic 50.0%
TGTTGCTGCTGCTGTTGTTG+GGG - chr3_1:72398726-72398745 None:intergenic 50.0%
GTTGTTGCTGCTGCTGTTGT+TGG - chr3_1:72398728-72398747 None:intergenic 50.0%
TTTGGAAACGGCGAAGGTTG+CGG - chr3_1:72398813-72398832 None:intergenic 50.0%
TCCGCTAGTGAGAATGGAAC+TGG - chr3_1:72398870-72398889 None:intergenic 50.0%
TCACGATCCGCTAGTGAGAA+TGG - chr3_1:72398876-72398895 None:intergenic 50.0%
CAGGCTTCACCCTAAACTGT+GGG - chr3_1:72399701-72399720 None:intergenic 50.0%
ATCATGTGGGCGGAAGCTAT+GGG + chr3_1:72399834-72399853 Msa0373400:CDS 50.0%
GAAGCTATGGGGAAGCTTGA+GGG + chr3_1:72399846-72399865 Msa0373400:CDS 50.0%
TATGGGGAAGCTTGAGGGTA+TGG + chr3_1:72399851-72399870 Msa0373400:CDS 50.0%
GGATCTTTCCCAACGCCTTA+AGG + chr3_1:72399923-72399942 Msa0373400:CDS 50.0%
TCTTCCGTGCTCCCAAACAT+CGG + chr3_1:72400109-72400128 Msa0373400:intron 50.0%
CATGGAAGCTCAGTTACACC+AGG - chr3_1:72400389-72400408 None:intergenic 50.0%
TTAGCAGTTCCCGTGTGTCT+AGG - chr3_1:72400772-72400791 None:intergenic 50.0%
! AAAGGGGGCATGGCATTAAC+AGG - chr3_1:72401154-72401173 None:intergenic 50.0%
TGTGGAAATGAAAGGGGGCA+TGG - chr3_1:72401164-72401183 None:intergenic 50.0%
GATCGGCGTCTAATCCTTTG+TGG + chr3_1:72401420-72401439 Msa0373400:intron 50.0%
GGCGTCTAATCCTTTGTGGA+GGG + chr3_1:72401424-72401443 Msa0373400:intron 50.0%
GCGTCTAATCCTTTGTGGAG+GGG + chr3_1:72401425-72401444 Msa0373400:intron 50.0%
GAGTTAGCAGCCGCAAAGAT+TGG + chr3_1:72401466-72401485 Msa0373400:intron 50.0%
! GCATGTGTTTGGGATCATGG+TGG + chr3_1:72401716-72401735 Msa0373400:intron 50.0%
TTCTTGGGAGAGCAGGAGAA+AGG - chr3_1:72402152-72402171 None:intergenic 50.0%
! GATGAGAATAGTGGAGGCGT+TGG + chr3_1:72402424-72402443 Msa0373400:CDS 50.0%
!! AGAATAGTGGAGGCGTTGGA+GGG + chr3_1:72402428-72402447 Msa0373400:CDS 50.0%
TCAGCTGAAAGGATCTGGAG+CGG + chr3_1:72402590-72402609 Msa0373400:intron 50.0%
GGTAGAATCTTACCTCCTGC+AGG - chr3_1:72402737-72402756 None:intergenic 50.0%
! ACAGGTATTGCAGCAGCAGA+TGG + chr3_1:72402896-72402915 Msa0373400:intron 50.0%
! GACACTTTTCGTGTAGTCGG+CGG + chr3_1:72403127-72403146 Msa0373400:three_prime_UTR 50.0%
AGATTGACCGCCGAACATGG+TGG - chr3_1:72398511-72398530 None:intergenic 55.0%
TGAAGATGGGGTCCCGAAGA+GGG - chr3_1:72398541-72398560 None:intergenic 55.0%
GGGACCCCATCTTCAGCATT+CGG + chr3_1:72398546-72398565 Msa0373400:CDS 55.0%
!! GGAGTGCCGAATGCTGAAGA+TGG - chr3_1:72398555-72398574 None:intergenic 55.0%
!! AAGAAGGGGTACCGAAGCCT+GGG - chr3_1:72398617-72398636 None:intergenic 55.0%
TCTTCTACACCCGCTTTCGG+TGG + chr3_1:72398657-72398676 Msa0373400:CDS 55.0%
GAAGAACCACCACCGAAAGC+GGG - chr3_1:72398669-72398688 None:intergenic 55.0%
GGAAGAACCACCACCGAAAG+CGG - chr3_1:72398670-72398689 None:intergenic 55.0%
GCAGGCTTCACCCTAAACTG+TGG - chr3_1:72399702-72399721 None:intergenic 55.0%
! CAGTTTAGGGTGAAGCCTGC+TGG + chr3_1:72399702-72399721 Msa0373400:CDS 55.0%
GATCATGTGGGCGGAAGCTA+TGG + chr3_1:72399833-72399852 Msa0373400:intron 55.0%
TCATGTGGGCGGAAGCTATG+GGG + chr3_1:72399835-72399854 Msa0373400:CDS 55.0%
GGAAGCTATGGGGAAGCTTG+AGG + chr3_1:72399845-72399864 Msa0373400:CDS 55.0%
! GATGTTTGGGAGCACGGAAG+AGG - chr3_1:72400110-72400129 None:intergenic 55.0%
! GCGTCGGTAACCTAGACACA+CGG + chr3_1:72400759-72400778 Msa0373400:intron 55.0%
CGTCGGTAACCTAGACACAC+GGG + chr3_1:72400760-72400779 Msa0373400:intron 55.0%
CGGCGTCTAATCCTTTGTGG+AGG + chr3_1:72401423-72401442 Msa0373400:intron 55.0%
!! GAGAATAGTGGAGGCGTTGG+AGG + chr3_1:72402427-72402446 Msa0373400:CDS 55.0%
ACTCGGCGTATCTCGTGTCA+AGG + chr3_1:72402638-72402657 Msa0373400:CDS 55.0%
TCAAAGTCTGGCTGACCTGC+AGG + chr3_1:72402719-72402738 Msa0373400:CDS 55.0%
!! GTGTTCTGAAGCGAGACGCA+CGG + chr3_1:72402940-72402959 Msa0373400:CDS 55.0%
!! TGTTCTGAAGCGAGACGCAC+GGG + chr3_1:72402941-72402960 Msa0373400:CDS 55.0%
ACGCCGCACACCACCATGTT+CGG + chr3_1:72398498-72398517 Msa0373400:exon 60.0%
CTGAAGATGGGGTCCCGAAG+AGG - chr3_1:72398542-72398561 None:intergenic 60.0%
ACACCAGCTTTCAGCACCCC+AGG + chr3_1:72398597-72398616 Msa0373400:CDS 60.0%
!! AAGCCTGGGGTGCTGAAAGC+TGG - chr3_1:72398603-72398622 None:intergenic 60.0%
GCTTTCAGCACCCCAGGCTT+CGG + chr3_1:72398603-72398622 Msa0373400:CDS 60.0%
!! AGAAGGGGTACCGAAGCCTG+GGG - chr3_1:72398616-72398635 None:intergenic 60.0%
!! GAAGAAGGGGTACCGAAGCC+TGG - chr3_1:72398618-72398637 None:intergenic 60.0%
TCTACACCCGCTTTCGGTGG+TGG + chr3_1:72398660-72398679 Msa0373400:CDS 60.0%
!! GTGGAGGCGTTGGAGGGAAA+AGG + chr3_1:72402434-72402453 Msa0373400:CDS 60.0%
AAGTCTGGCTGACCTGCAGG+AGG + chr3_1:72402722-72402741 Msa0373400:CDS 60.0%
GAAGCGAGACGCACGGGATA+TGG + chr3_1:72402947-72402966 Msa0373400:CDS 60.0%
! CCGCCGAACATGGTGGTGTG+CGG - chr3_1:72398504-72398523 None:intergenic 65.0%
CCGCACACCACCATGTTCGG+CGG + chr3_1:72398501-72398520 Msa0373400:exon 65.0%
AACGGCGAAGGTTGCGGCGC+CGG - chr3_1:72398807-72398826 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 72398375 72403324 72398375 ID=Msa0373400;Name=Msa0373400
chr3_1 mRNA 72398375 72403324 72398375 ID=Msa0373400-mRNA-1;Parent=Msa0373400;Name=Msa0373400-mRNA-1;_AED=0.09;_eAED=0.09;_QI=138|1|1|1|1|1|9|302|380
chr3_1 exon 72398375 72398902 72398375 ID=Msa0373400-mRNA-1:exon:16171;Parent=Msa0373400-mRNA-1
chr3_1 exon 72398998 72399051 72398998 ID=Msa0373400-mRNA-1:exon:16172;Parent=Msa0373400-mRNA-1
chr3_1 exon 72399675 72399734 72399675 ID=Msa0373400-mRNA-1:exon:16173;Parent=Msa0373400-mRNA-1
chr3_1 exon 72399834 72399944 72399834 ID=Msa0373400-mRNA-1:exon:16174;Parent=Msa0373400-mRNA-1
chr3_1 exon 72402077 72402142 72402077 ID=Msa0373400-mRNA-1:exon:16175;Parent=Msa0373400-mRNA-1
chr3_1 exon 72402238 72402324 72402238 ID=Msa0373400-mRNA-1:exon:16176;Parent=Msa0373400-mRNA-1
chr3_1 exon 72402422 72402523 72402422 ID=Msa0373400-mRNA-1:exon:16177;Parent=Msa0373400-mRNA-1
chr3_1 exon 72402594 72402743 72402594 ID=Msa0373400-mRNA-1:exon:16178;Parent=Msa0373400-mRNA-1
chr3_1 exon 72402900 72403324 72402900 ID=Msa0373400-mRNA-1:exon:16179;Parent=Msa0373400-mRNA-1
chr3_1 five_prime_UTR 72398375 72398512 72398375 ID=Msa0373400-mRNA-1:five_prime_utr;Parent=Msa0373400-mRNA-1
chr3_1 CDS 72398513 72398902 72398513 ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1
chr3_1 CDS 72398998 72399051 72398998 ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1
chr3_1 CDS 72399675 72399734 72399675 ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1
chr3_1 CDS 72399834 72399944 72399834 ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1
chr3_1 CDS 72402077 72402142 72402077 ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1
chr3_1 CDS 72402238 72402324 72402238 ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1
chr3_1 CDS 72402422 72402523 72402422 ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1
chr3_1 CDS 72402594 72402743 72402594 ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1
chr3_1 CDS 72402900 72403022 72402900 ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1
chr3_1 three_prime_UTR 72403023 72403324 72403023 ID=Msa0373400-mRNA-1:three_prime_utr;Parent=Msa0373400-mRNA-1
Gene Sequence

>Msa0373400

ATGTTCGGCGGTCAATCTTCATCTTCCCTCTTCGGGACCCCATCTTCAGCATTCGGCACTCCAACTTTCGGTACTCCTTCTTCAACACCAGCTTTCAGCACCCCAGGCTTCGGTACCCCTTCTTCAACTCCCGCTTTTGGTGCTTCTTCTACACCCGCTTTCGGTGGTGGTTCTTCCCTCTTCTCAACACCGTTCTCTGCTCAACAACAACCCCAACAACAGCAGCAGCAACAACAAAATTCACTCTTTCAACTATCACCTTCTACTGGTTTTGGGTTTCAGAATTCTACGCCGGCGCCGCAACCTTCGCCGTTTCCAAATTCTCAATTGACTACTCAAATGGCTAATGTTGCTCCAGTTCCATTCTCACTAGCGGATCGTGATATTCAAGCGATTCTTGATTCTTATAAAGAAGATGCTGGAAACCCCAAATACGCTTTTAAGCATTTGTTATTCAGTGTAACAGACCCACAGTTTAGGGTGAAGCCTGCTGGTGTTTCAGATATCATGTGGGCGGAAGCTATGGGGAAGCTTGAGGGTATGGAAAGTGCTGATAGAGAACGTCTTTGGCCACAACAAGTTCAAGGTTTTAAGGATCTTTCCCAACGCCTTAAGCTCCAAGATGAAGTCATTGTCTCTGATGCAGAGAGATTAAGTGTAACCCAAAGCAATGTTAAAATGCTCCAAAGACATTTTCAAGCAGATACTCTTCCTTGGATTCAAAGACTGAAACAGAAAGAACAGATTCTTCAGCAACGTATTTTAAGAGTGATGAGAATAGTGGAGGCGTTGGAGGGAAAAGGCTGCCGTATTCCATTAACAAAAGGGGAAGCTGAACTCGCTGAGAAACTAGCCACAATAACTAGACAGCTGAAAGGATCTGGAGCGGAATTATCTAGAAGGGTACAAAATCTACTCGGCGTATCTCGTGTCAAGGCTAATAGCAATGGATTTGGTAACTCAGCTCATCTTCTGGGCTCAACCAAAATTCACGATCAAAGTCTGGCTGACCTGCAGGAGGTATTGCAGCAGCAGATGGATGCCATAGCAAGACTTGGCAGTGTTCTGAAGCGAGACGCACGGGATATGGAGATTATGATGGCTGAGGACATGGGAACCTCAGAAAATGGACATTTAATGTAA

Protein sequence

>Msa0373400

MFGGQSSSSLFGTPSSAFGTPTFGTPSSTPAFSTPGFGTPSSTPAFGASSTPAFGGGSSLFSTPFSAQQQPQQQQQQQQNSLFQLSPSTGFGFQNSTPAPQPSPFPNSQLTTQMANVAPVPFSLADRDIQAILDSYKEDAGNPKYAFKHLLFSVTDPQFRVKPAGVSDIMWAEAMGKLEGMESADRERLWPQQVQGFKDLSQRLKLQDEVIVSDAERLSVTQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRILRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGAELSRRVQNLLGVSRVKANSNGFGNSAHLLGSTKIHDQSLADLQEVLQQQMDAIARLGSVLKRDARDMEIMMAEDMGTSENGHLM*