Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0373400 | AES72057.2 | 99.474 | 380 | 2 | 0 | 1 | 380 | 1 | 380 | 0.0 | 767 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0373400 | sp|Q8GYF7|NUP54_ARATH | 67.560 | 373 | 106 | 4 | 10 | 370 | 1 | 370 | 1.38e-163 | 466 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0373400 | G7JC14 | 99.474 | 380 | 2 | 0 | 1 | 380 | 1 | 380 | 0.0 | 767 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0373400 | Msa0421960 | 0.946746 | 2.558499e-105 | -8.615850e-47 |
Msa0373400 | Msa0514370 | 0.992752 | 3.236227e-195 | -8.615850e-47 |
Msa0373400 | Msa0829860 | 0.982499 | 3.005659e-155 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0373400 | MtrunA17_Chr3g0122701 | 99.474 | 380 | 2 | 0 | 1 | 380 | 1 | 380 | 0.0 | 767 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0373400 | AT1G24310.1 | 67.560 | 373 | 106 | 4 | 10 | 370 | 1 | 370 | 1.40e-164 | 466 |
Find 134 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAACCTTAAAAGCGTATT+TGG | 0.127759 | 3_1:-72399035 | None:intergenic |
TGAGTAGTCAATTGAGAATT+TGG | 0.173685 | 3_1:-72398828 | None:intergenic |
CTATCACCTTCTACTGGTTT+TGG | 0.175988 | 3_1:+72398765 | Msa0373400:CDS |
CAGACTTTGATCGTGAATTT+TGG | 0.193440 | 3_1:-72402706 | None:intergenic |
TGGTAACTCAGCTCATCTTC+TGG | 0.215937 | 3_1:+72402677 | Msa0373400:CDS |
GTATATTTGTCGGAGGATTT+TGG | 0.218217 | 3_1:+72403239 | Msa0373400:three_prime_UTR |
TATCTGCTTGAAAATGTCTT+TGG | 0.301845 | 3_1:-72402240 | None:intergenic |
GAAGCGAGACGCACGGGATA+TGG | 0.316915 | 3_1:+72402947 | Msa0373400:CDS |
AAAACCTTAAAAGCGTATTT+GGG | 0.319798 | 3_1:-72399034 | None:intergenic |
CAATCTTCATCTTCCCTCTT+CGG | 0.322179 | 3_1:+72398525 | Msa0373400:CDS |
TTTGTCCATGTATCATGATT+TGG | 0.323361 | 3_1:+72403077 | Msa0373400:three_prime_UTR |
AACCCAAAGCAATGTTAAAA+TGG | 0.323703 | 3_1:+72402121 | Msa0373400:CDS |
GTGTAACAGACCCACAGTTT+AGG | 0.324603 | 3_1:+72399688 | Msa0373400:CDS |
GTTGTTGCTGCTGCTGTTGT+TGG | 0.325620 | 3_1:-72398725 | None:intergenic |
GACATGGGAACCTCAGAAAA+TGG | 0.331518 | 3_1:+72402987 | Msa0373400:CDS |
TTGTTGCTGCTGCTGTTGTT+GGG | 0.347224 | 3_1:-72398724 | None:intergenic |
GGTAACTCAGCTCATCTTCT+GGG | 0.368462 | 3_1:+72402678 | Msa0373400:CDS |
CCTTCTTCAACTCCCGCTTT+TGG | 0.369276 | 3_1:+72398630 | Msa0373400:CDS |
GGATCTTTCCCAACGCCTTA+AGG | 0.376166 | 3_1:+72399923 | Msa0373400:CDS |
TGTAACAGACCCACAGTTTA+GGG | 0.381508 | 3_1:+72399689 | Msa0373400:CDS |
GCTTCTTCTACACCCGCTTT+CGG | 0.390655 | 3_1:+72398654 | Msa0373400:CDS |
GAATGTAGGAAGATTCAAAT+AGG | 0.392916 | 3_1:-72403185 | None:intergenic |
AATCTTCATCTTCCCTCTTC+GGG | 0.396928 | 3_1:+72398526 | Msa0373400:CDS |
CTTGAAGGGTTCAGCATACA+TGG | 0.400271 | 3_1:+72403207 | Msa0373400:three_prime_UTR |
AAGGCTAATAGCAATGGATT+TGG | 0.408263 | 3_1:+72402657 | Msa0373400:CDS |
GATCATGTGGGCGGAAGCTA+TGG | 0.409669 | 3_1:+72399833 | Msa0373400:intron |
CTGGAGCGGAATTATCTAGA+AGG | 0.413522 | 3_1:+72402604 | Msa0373400:CDS |
GTGCTGATAGAGAACGTCTT+TGG | 0.413609 | 3_1:+72399877 | Msa0373400:CDS |
AAAATTTACCTTAAGGCGTT+GGG | 0.422159 | 3_1:-72399931 | None:intergenic |
AACGGCGAAGGTTGCGGCGC+CGG | 0.423275 | 3_1:-72398804 | None:intergenic |
GCATTCGGCACTCCAACTTT+CGG | 0.423472 | 3_1:+72398561 | Msa0373400:CDS |
GAAGAAGGGGTACCGAAGCC+TGG | 0.427369 | 3_1:-72398615 | None:intergenic |
TAGGCCACAAACATCGCAAA+TGG | 0.427930 | 3_1:-72403166 | None:intergenic |
GAATCTTCCTACATTCTTGA+AGG | 0.428611 | 3_1:+72403192 | Msa0373400:three_prime_UTR |
TTCTCAATTGACTACTCAAA+TGG | 0.443096 | 3_1:+72398833 | Msa0373400:CDS |
TGCCGTATTCCATTAACAAA+AGG | 0.445652 | 3_1:+72402458 | Msa0373400:CDS |
GCTTTCAGCACCCCAGGCTT+CGG | 0.445658 | 3_1:+72398603 | Msa0373400:CDS |
TCTACACCCGCTTTCGGTGG+TGG | 0.448947 | 3_1:+72398660 | Msa0373400:CDS |
GGGACCCCATCTTCAGCATT+CGG | 0.452689 | 3_1:+72398546 | Msa0373400:CDS |
TGAAACCCAAAACCAGTAGA+AGG | 0.453433 | 3_1:-72398771 | None:intergenic |
GAGAATAGTGGAGGCGTTGG+AGG | 0.455797 | 3_1:+72402427 | Msa0373400:CDS |
TGACCCATTTGCGATGTTTG+TGG | 0.457218 | 3_1:+72403162 | Msa0373400:three_prime_UTR |
TTCAAGCAGATACTCTTCCT+TGG | 0.459845 | 3_1:+72402251 | Msa0373400:CDS |
CTTTGGCCACAACAAGTTCA+AGG | 0.461110 | 3_1:+72399894 | Msa0373400:CDS |
ACGCCGCACACCACCATGTT+CGG | 0.462481 | 3_1:+72398498 | Msa0373400:exon |
AAGCCTGGGGTGCTGAAAGC+TGG | 0.465129 | 3_1:-72398600 | None:intergenic |
CAAAATTCACGATCAAAGTC+TGG | 0.467189 | 3_1:+72402707 | Msa0373400:CDS |
TCCGCTAGTGAGAATGGAAC+TGG | 0.468365 | 3_1:-72398867 | None:intergenic |
TATGGGGAAGCTTGAGGGTA+TGG | 0.469058 | 3_1:+72399851 | Msa0373400:CDS |
CAGTTTAGGGTGAAGCCTGC+TGG | 0.475949 | 3_1:+72399702 | Msa0373400:CDS |
TTTGGAAACGGCGAAGGTTG+CGG | 0.476917 | 3_1:-72398810 | None:intergenic |
TCAAAGTCTGGCTGACCTGC+AGG | 0.480292 | 3_1:+72402719 | Msa0373400:CDS |
GTCAATTGAGAATTTGGAAA+CGG | 0.480882 | 3_1:-72398822 | None:intergenic |
GATGAGAATAGTGGAGGCGT+TGG | 0.481773 | 3_1:+72402424 | Msa0373400:CDS |
TCACGATCCGCTAGTGAGAA+TGG | 0.483587 | 3_1:-72398873 | None:intergenic |
GCCGTATTCCATTAACAAAA+GGG | 0.485365 | 3_1:+72402459 | Msa0373400:CDS |
TTTCAACTATCACCTTCTAC+TGG | 0.487130 | 3_1:+72398759 | Msa0373400:CDS |
GAAGCTATGGGGAAGCTTGA+GGG | 0.490154 | 3_1:+72399846 | Msa0373400:CDS |
CAGAGACAATGACTTCATCT+TGG | 0.494474 | 3_1:-72402079 | None:intergenic |
GTTAGCAAGGGTATATTTGT+CGG | 0.495850 | 3_1:+72403229 | Msa0373400:three_prime_UTR |
AAGAAGGGGTACCGAAGCCT+GGG | 0.499083 | 3_1:-72398614 | None:intergenic |
TTAAAACCTTGAACTTGTTG+TGG | 0.500336 | 3_1:-72399900 | None:intergenic |
GTGGAGGCGTTGGAGGGAAA+AGG | 0.503729 | 3_1:+72402434 | Msa0373400:CDS |
GCGCTTAAATTTAGCAGTCT+AGG | 0.504211 | 3_1:-72398403 | None:intergenic |
CCAAAAGCGGGAGTTGAAGA+AGG | 0.506648 | 3_1:-72398630 | None:intergenic |
ACACCAGCTTTCAGCACCCC+AGG | 0.510458 | 3_1:+72398597 | Msa0373400:CDS |
TTCTACCTGTCTAGTTATTG+TGG | 0.512168 | 3_1:-72402507 | None:intergenic |
TGTTGCTGCTGCTGTTGTTG+GGG | 0.517011 | 3_1:-72398723 | None:intergenic |
AGAGAACGGTGTTGAGAAGA+GGG | 0.519091 | 3_1:-72398688 | None:intergenic |
GATTATGATGGCTGAGGACA+TGG | 0.520825 | 3_1:+72402971 | Msa0373400:CDS |
TGTTTCAGTCTTTGAATCCA+AGG | 0.521920 | 3_1:-72402268 | None:intergenic |
ACAGGTATTGCAGCAGCAGA+TGG | 0.527438 | 3_1:+72402896 | Msa0373400:intron |
GATTCTTATAAAGAAGATGC+TGG | 0.529366 | 3_1:+72399007 | Msa0373400:CDS |
TGAGAATTTGGAAACGGCGA+AGG | 0.531345 | 3_1:-72398816 | None:intergenic |
AATCTTCCTACATTCTTGAA+GGG | 0.531796 | 3_1:+72403193 | Msa0373400:three_prime_UTR |
GGTAGAATCTTACCTCCTGC+AGG | 0.538215 | 3_1:-72402734 | None:intergenic |
GGAGTGCCGAATGCTGAAGA+TGG | 0.538730 | 3_1:-72398552 | None:intergenic |
ACTAGCCACAATAACTAGAC+AGG | 0.539256 | 3_1:+72402502 | Msa0373400:CDS |
ATCATGTGGGCGGAAGCTAT+GGG | 0.541380 | 3_1:+72399834 | Msa0373400:CDS |
CGTGTCAAGGCTAATAGCAA+TGG | 0.543360 | 3_1:+72402651 | Msa0373400:CDS |
CTGAAGATGGGGTCCCGAAG+AGG | 0.544355 | 3_1:-72398539 | None:intergenic |
CAGAGAACGGTGTTGAGAAG+AGG | 0.544554 | 3_1:-72398689 | None:intergenic |
GGAAGCTATGGGGAAGCTTG+AGG | 0.544713 | 3_1:+72399845 | Msa0373400:CDS |
GTTTATGTTGCTAGATCATG+TGG | 0.544933 | 3_1:+72399820 | Msa0373400:intron |
CTGAAAGCTGGTGTTGAAGA+AGG | 0.547067 | 3_1:-72398588 | None:intergenic |
AGGCCACAAACATCGCAAAT+GGG | 0.549395 | 3_1:-72403165 | None:intergenic |
TATTACCAAATCATGATACA+TGG | 0.551515 | 3_1:-72403082 | None:intergenic |
AGAATAGTGGAGGCGTTGGA+GGG | 0.552709 | 3_1:+72402428 | Msa0373400:CDS |
GAGTGCCGAATGCTGAAGAT+GGG | 0.561315 | 3_1:-72398551 | None:intergenic |
TGTTCTGAAGCGAGACGCAC+GGG | 0.561337 | 3_1:+72402941 | Msa0373400:CDS |
AACACTGCCAAGTCTTGCTA+TGG | 0.563127 | 3_1:-72402922 | None:intergenic |
GAAGAACCACCACCGAAAGC+GGG | 0.563527 | 3_1:-72398666 | None:intergenic |
GAAGAAGGAGTACCGAAAGT+TGG | 0.564163 | 3_1:-72398573 | None:intergenic |
GTGTTCTGAAGCGAGACGCA+CGG | 0.568554 | 3_1:+72402940 | Msa0373400:CDS |
GGAAGAACCACCACCGAAAG+CGG | 0.569387 | 3_1:-72398667 | None:intergenic |
TCCAGTTCCATTCTCACTAG+CGG | 0.572002 | 3_1:+72398866 | Msa0373400:CDS |
TGAAGATGGGGTCCCGAAGA+GGG | 0.572735 | 3_1:-72398538 | None:intergenic |
TTCAGCATACATGGTTAGCA+AGG | 0.574227 | 3_1:+72403216 | Msa0373400:three_prime_UTR |
GCTGAACCCTTCAAGAATGT+AGG | 0.576573 | 3_1:-72403199 | None:intergenic |
TGAAGATTGACCGCCGAACA+TGG | 0.577493 | 3_1:-72398511 | None:intergenic |
ATTGAAGGTGATGAGAATAG+TGG | 0.583298 | 3_1:+72402415 | Msa0373400:intron |
CAAAAGCGGGAGTTGAAGAA+GGG | 0.585231 | 3_1:-72398629 | None:intergenic |
GTAGAAGAAGCACCAAAAGC+GGG | 0.586298 | 3_1:-72398642 | None:intergenic |
TCTTCTACACCCGCTTTCGG+TGG | 0.586639 | 3_1:+72398657 | Msa0373400:CDS |
ACGGGATATGGAGATTATGA+TGG | 0.590444 | 3_1:+72402959 | Msa0373400:CDS |
TATGGAGATTATGATGGCTG+AGG | 0.590797 | 3_1:+72402965 | Msa0373400:CDS |
ATGGATGCCATAGCAAGACT+TGG | 0.599180 | 3_1:+72402915 | Msa0373400:CDS |
AGCAAGGGTATATTTGTCGG+AGG | 0.606225 | 3_1:+72403232 | Msa0373400:three_prime_UTR |
ATGGACAAATTACAAACCAA+AGG | 0.608304 | 3_1:-72403063 | None:intergenic |
CAGGCTTCACCCTAAACTGT+GGG | 0.612681 | 3_1:-72399698 | None:intergenic |
ATTATGATGGCTGAGGACAT+GGG | 0.618742 | 3_1:+72402972 | Msa0373400:CDS |
CTTACATCTGAAACACCAGC+AGG | 0.625885 | 3_1:-72399717 | None:intergenic |
CCGTATTCCATTAACAAAAG+GGG | 0.630334 | 3_1:+72402460 | Msa0373400:CDS |
AAACCTTAAAAGCGTATTTG+GGG | 0.630724 | 3_1:-72399033 | None:intergenic |
TGGAGCGGAATTATCTAGAA+GGG | 0.631061 | 3_1:+72402605 | Msa0373400:CDS |
GGTTGTTGTTGAGCAGAGAA+CGG | 0.632380 | 3_1:-72398702 | None:intergenic |
TCAGCTGAAAGGATCTGGAG+CGG | 0.638114 | 3_1:+72402590 | Msa0373400:intron |
CCGCCGAACATGGTGGTGTG+CGG | 0.642470 | 3_1:-72398501 | None:intergenic |
TGTAGAAGAAGCACCAAAAG+CGG | 0.643383 | 3_1:-72398643 | None:intergenic |
GCAGGCTTCACCCTAAACTG+TGG | 0.646030 | 3_1:-72399699 | None:intergenic |
GAAGGTGATGAGAATAGTGG+AGG | 0.650075 | 3_1:+72402418 | Msa0373400:intron |
ACTCGGCGTATCTCGTGTCA+AGG | 0.651033 | 3_1:+72402638 | Msa0373400:CDS |
AGAAGGGTACAAAATCTACT+CGG | 0.654843 | 3_1:+72402621 | Msa0373400:CDS |
TGGGTTTCAGAATTCTACGC+CGG | 0.655438 | 3_1:+72398785 | Msa0373400:CDS |
CCGCACACCACCATGTTCGG+CGG | 0.655972 | 3_1:+72398501 | Msa0373400:exon |
AAGTCTGGCTGACCTGCAGG+AGG | 0.657558 | 3_1:+72402722 | Msa0373400:CDS |
TCAGCATACATGGTTAGCAA+GGG | 0.662415 | 3_1:+72403217 | Msa0373400:three_prime_UTR |
TCATGTGGGCGGAAGCTATG+GGG | 0.675093 | 3_1:+72399835 | Msa0373400:CDS |
TTTATGTTGCTAGATCATGT+GGG | 0.694092 | 3_1:+72399821 | Msa0373400:intron |
ATGTTGCTAGATCATGTGGG+CGG | 0.703435 | 3_1:+72399824 | Msa0373400:intron |
AAAAGCGGGAGTTGAAGAAG+GGG | 0.703806 | 3_1:-72398628 | None:intergenic |
AGAAGGGGTACCGAAGCCTG+GGG | 0.706896 | 3_1:-72398613 | None:intergenic |
AGTGCCGAATGCTGAAGATG+GGG | 0.747720 | 3_1:-72398550 | None:intergenic |
AGATTGACCGCCGAACATGG+TGG | 0.846340 | 3_1:-72398508 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTCTTCATTTAAAATTTATT+TGG | + | chr3_1:72399070-72399089 | Msa0373400:intron | 10.0% |
!!! | TAAAATTTATTTGGAATTAT+AGG | + | chr3_1:72399079-72399098 | Msa0373400:intron | 10.0% |
!!! | AAAATTTATTTGGAATTATA+GGG | + | chr3_1:72399080-72399099 | Msa0373400:intron | 10.0% |
!!! | AGTTTAATTTTTAGTAAAAT+AGG | + | chr3_1:72400358-72400377 | Msa0373400:intron | 10.0% |
!!! | GTTTAATTTTTAGTAAAATA+GGG | + | chr3_1:72400359-72400378 | Msa0373400:intron | 10.0% |
!!! | TTTAATTTTTAGTAAAATAG+GGG | + | chr3_1:72400360-72400379 | Msa0373400:intron | 10.0% |
!!! | AAACTAGTTGATTAAATTTT+TGG | + | chr3_1:72399311-72399330 | Msa0373400:intron | 15.0% |
!!! | AGCTTATAACTTATTTTTAT+TGG | - | chr3_1:72399511-72399530 | None:intergenic | 15.0% |
!!! | TTTTTTATAGTGTTTAAAAC+AGG | + | chr3_1:72400013-72400032 | Msa0373400:intron | 15.0% |
!!! | TTTTTATAGTGTTTAAAACA+GGG | + | chr3_1:72400014-72400033 | Msa0373400:intron | 15.0% |
!!! | AATATTTGGAAATTTTATGA+TGG | - | chr3_1:72400154-72400173 | None:intergenic | 15.0% |
!! | ATCATAAAATTTCCAAATAT+TGG | + | chr3_1:72400153-72400172 | Msa0373400:intron | 15.0% |
!! | TGTTTATAATAGATTTAGAA+TGG | - | chr3_1:72400439-72400458 | None:intergenic | 15.0% |
!! | ATTTATTCTAACAAGAAAAT+GGG | - | chr3_1:72400801-72400820 | None:intergenic | 15.0% |
!! | TATTTATTCTAACAAGAAAA+TGG | - | chr3_1:72400802-72400821 | None:intergenic | 15.0% |
!! | TTAATTAACAAGTTAAAACA+AGG | + | chr3_1:72400844-72400863 | Msa0373400:intron | 15.0% |
!! | CTAAAACAACTAAAATTAAT+AGG | - | chr3_1:72401644-72401663 | None:intergenic | 15.0% |
!! | TATTGATCTAATACTAAAAT+TGG | - | chr3_1:72401858-72401877 | None:intergenic | 15.0% |
!!! | TTATCTTTGTTTTTCCAATT+AGG | + | chr3_1:72398976-72398995 | Msa0373400:intron | 20.0% |
!! | TTTGGATAAATAGCTTAATT+AGG | - | chr3_1:72399126-72399145 | None:intergenic | 20.0% |
!!! | TTGATTAAATTTTTGGTGTT+TGG | + | chr3_1:72399318-72399337 | Msa0373400:intron | 20.0% |
!! | AGAAAATAAAACGTATTAGA+TGG | - | chr3_1:72400052-72400071 | None:intergenic | 20.0% |
!!! | TTATTTTCTTTACCAATTTG+TGG | + | chr3_1:72400063-72400082 | Msa0373400:intron | 20.0% |
!! | AAAATTTCCAAATATTGGTA+TGG | + | chr3_1:72400158-72400177 | Msa0373400:intron | 20.0% |
!! | ATTATAGCAATGAATTTGAT+AGG | + | chr3_1:72400243-72400262 | Msa0373400:intron | 20.0% |
!! | TATTTAACATCTAAATTGCA+AGG | - | chr3_1:72400468-72400487 | None:intergenic | 20.0% |
!! | AGAAATGTCATGTAATTTAT+AGG | - | chr3_1:72401362-72401381 | None:intergenic | 20.0% |
!!! | ACATTTTAAATGAAGTTGAT+CGG | + | chr3_1:72401403-72401422 | Msa0373400:intron | 20.0% |
!! | TTATTAATATAGCATGTGTT+TGG | + | chr3_1:72401705-72401724 | Msa0373400:intron | 20.0% |
!! | TATTAATATAGCATGTGTTT+GGG | + | chr3_1:72401706-72401725 | Msa0373400:intron | 20.0% |
!! | TATATTGAAATATGCCATAA+TGG | + | chr3_1:72401913-72401932 | Msa0373400:intron | 20.0% |
!! | AATTAGAAACTGTTGAAATA+CGG | + | chr3_1:72402017-72402036 | Msa0373400:intron | 20.0% |
!! | AAAACCTTAAAAGCGTATTT+GGG | - | chr3_1:72399037-72399056 | None:intergenic | 25.0% |
! | ATGATAAATTAGGTTCTGTT+TGG | - | chr3_1:72399144-72399163 | None:intergenic | 25.0% |
! | GAAACAGCTTATGATAAATT+AGG | - | chr3_1:72399154-72399173 | None:intergenic | 25.0% |
!! | AGACAATTTAAGACAGATTA+TGG | - | chr3_1:72399176-72399195 | None:intergenic | 25.0% |
! | AGCAGAAAAAATTTACCTTA+AGG | - | chr3_1:72399941-72399960 | None:intergenic | 25.0% |
! | AAAGTTTAATTCCGATGTTT+GGG | - | chr3_1:72400123-72400142 | None:intergenic | 25.0% |
! | AAAAGTTTAATTCCGATGTT+TGG | - | chr3_1:72400124-72400143 | None:intergenic | 25.0% |
! | AAAACTACCATACCAATATT+TGG | - | chr3_1:72400168-72400187 | None:intergenic | 25.0% |
! | TAATGATAGGTGAAATTGAA+TGG | - | chr3_1:72400194-72400213 | None:intergenic | 25.0% |
! | TAGATATCCAAACAGAAAAT+AGG | + | chr3_1:72400212-72400231 | Msa0373400:intron | 25.0% |
!! | CTTGAATATACGATTTTAGA+AGG | + | chr3_1:72400291-72400310 | Msa0373400:intron | 25.0% |
!!! | TATACGATTTTAGAAGGAAA+TGG | + | chr3_1:72400297-72400316 | Msa0373400:intron | 25.0% |
! | TAAAATCAAGTTCAAATGTC+TGG | - | chr3_1:72400552-72400571 | None:intergenic | 25.0% |
!! | GTTCTATTTTCAAAACAAAC+TGG | + | chr3_1:72400697-72400716 | Msa0373400:intron | 25.0% |
! | TTAAAACAAGGCATAACATA+TGG | + | chr3_1:72400856-72400875 | Msa0373400:intron | 25.0% |
! | TAAAACAAGGCATAACATAT+GGG | + | chr3_1:72400857-72400876 | Msa0373400:intron | 25.0% |
! | TGTGAAAAGTAGAACAAAAT+AGG | + | chr3_1:72400901-72400920 | Msa0373400:intron | 25.0% |
! | GTCAATTCTAAGTAAAATGT+TGG | + | chr3_1:72400942-72400961 | Msa0373400:intron | 25.0% |
!!! | ACTTAAGCTGTTTTTGAAAA+GGG | - | chr3_1:72401064-72401083 | None:intergenic | 25.0% |
!!! | AACTTAAGCTGTTTTTGAAA+AGG | - | chr3_1:72401065-72401084 | None:intergenic | 25.0% |
!! | GAAATATATGCTTTTCTGAA+AGG | - | chr3_1:72401118-72401137 | None:intergenic | 25.0% |
! | ATAATGATGTGGAAATGAAA+GGG | - | chr3_1:72401171-72401190 | None:intergenic | 25.0% |
!!! | TTTTTTCTCAACTTTTGTTG+TGG | - | chr3_1:72401535-72401554 | None:intergenic | 25.0% |
! | AAACGAGAGAAATATGATAT+GGG | + | chr3_1:72401664-72401683 | Msa0373400:intron | 25.0% |
!!! | AATAACCATGCCTTTTAATT+TGG | - | chr3_1:72401690-72401709 | None:intergenic | 25.0% |
! | ATGGGAATAATATATGCTAA+AGG | + | chr3_1:72401791-72401810 | Msa0373400:intron | 25.0% |
! | ATATGCTAAAGGATAAGTTA+AGG | + | chr3_1:72401802-72401821 | Msa0373400:intron | 25.0% |
! | AATATATACAACTCTTCACT+GGG | + | chr3_1:72401886-72401905 | Msa0373400:intron | 25.0% |
! | ATTAGAAACTGTTGAAATAC+GGG | + | chr3_1:72402018-72402037 | Msa0373400:intron | 25.0% |
!!! | TACCATTTTAACATTGCTTT+GGG | - | chr3_1:72402126-72402145 | None:intergenic | 25.0% |
!!! | ATACCATTTTAACATTGCTT+TGG | - | chr3_1:72402127-72402146 | None:intergenic | 25.0% |
! | ATATGATTAGACATAATGAG+GGG | - | chr3_1:72402389-72402408 | None:intergenic | 25.0% |
! | CATATGATTAGACATAATGA+GGG | - | chr3_1:72402390-72402409 | None:intergenic | 25.0% |
! | ACATATGATTAGACATAATG+AGG | - | chr3_1:72402391-72402410 | None:intergenic | 25.0% |
! | TATTACCAAATCATGATACA+TGG | - | chr3_1:72403085-72403104 | None:intergenic | 25.0% |
! | TTCTGAAAGCAAAAAGCAAA+AGG | - | chr3_1:72398430-72398449 | None:intergenic | 30.0% |
GTCAATTGAGAATTTGGAAA+CGG | - | chr3_1:72398825-72398844 | None:intergenic | 30.0% | |
TGAGTAGTCAATTGAGAATT+TGG | - | chr3_1:72398831-72398850 | None:intergenic | 30.0% | |
TTCTCAATTGACTACTCAAA+TGG | + | chr3_1:72398833-72398852 | Msa0373400:CDS | 30.0% | |
GATTCTTATAAAGAAGATGC+TGG | + | chr3_1:72399007-72399026 | Msa0373400:CDS | 30.0% | |
! | AAACCTTAAAAGCGTATTTG+GGG | - | chr3_1:72399036-72399055 | None:intergenic | 30.0% |
! | GAAAACCTTAAAAGCGTATT+TGG | - | chr3_1:72399038-72399057 | None:intergenic | 30.0% |
TTTAAATGAAGAAGACAGAG+AGG | - | chr3_1:72399063-72399082 | None:intergenic | 30.0% | |
! | TATTTGGAATTATAGGGTCA+TGG | + | chr3_1:72399086-72399105 | Msa0373400:intron | 30.0% |
AATTATAGGGTCATGGATAT+AGG | + | chr3_1:72399093-72399112 | Msa0373400:intron | 30.0% | |
ATTATAGGGTCATGGATATA+GGG | + | chr3_1:72399094-72399113 | Msa0373400:intron | 30.0% | |
GTCTAAGTTACTGTTTGAAT+CGG | - | chr3_1:72399223-72399242 | None:intergenic | 30.0% | |
GCTTATAAGTTAACTTACAG+CGG | + | chr3_1:72399268-72399287 | Msa0373400:intron | 30.0% | |
ATAAGCTTGTGAGAAAATGA+CGG | + | chr3_1:72399524-72399543 | Msa0373400:intron | 30.0% | |
ATCAGCTCATATGACTAAAA+AGG | - | chr3_1:72399563-72399582 | None:intergenic | 30.0% | |
ATGAGAAAACATGAAAGCTA+CGG | - | chr3_1:72399630-72399649 | None:intergenic | 30.0% | |
TTTATGTTGCTAGATCATGT+GGG | + | chr3_1:72399821-72399840 | Msa0373400:intron | 30.0% | |
!! | TTAAAACCTTGAACTTGTTG+TGG | - | chr3_1:72399903-72399922 | None:intergenic | 30.0% |
! | ACAACAAGTTCAAGGTTTTA+AGG | + | chr3_1:72399902-72399921 | Msa0373400:CDS | 30.0% |
! | AAAATTTACCTTAAGGCGTT+GGG | - | chr3_1:72399934-72399953 | None:intergenic | 30.0% |
AAAAATTTACCTTAAGGCGT+TGG | - | chr3_1:72399935-72399954 | None:intergenic | 30.0% | |
TATGTTTGGATTGATTGGAA+GGG | + | chr3_1:72399965-72399984 | Msa0373400:intron | 30.0% | |
! | TATAGTGTTTAAAACAGGGT+TGG | + | chr3_1:72400018-72400037 | Msa0373400:intron | 30.0% |
CTGTTTGGATATCTAATGAT+AGG | - | chr3_1:72400207-72400226 | None:intergenic | 30.0% | |
GAATTTGATAGGTTAACTAC+TGG | + | chr3_1:72400254-72400273 | Msa0373400:intron | 30.0% | |
AAGGAAATGGATGTTCATAT+GGG | + | chr3_1:72400310-72400329 | Msa0373400:intron | 30.0% | |
AACATCTAAATTGCAAGGTA+AGG | - | chr3_1:72400463-72400482 | None:intergenic | 30.0% | |
TTTCAAAACAAACTGGTGAT+AGG | + | chr3_1:72400704-72400723 | Msa0373400:intron | 30.0% | |
ATATATATATAGACGTGCGT+CGG | + | chr3_1:72400743-72400762 | Msa0373400:intron | 30.0% | |
!!! | TATGGGTTTTGTTTCATGTT+TGG | + | chr3_1:72400874-72400893 | Msa0373400:intron | 30.0% |
AAAAAATGAAACTGAACAGC+TGG | - | chr3_1:72400989-72401008 | None:intergenic | 30.0% | |
! | AAAAAGGTGTAGGTAACATT+TGG | - | chr3_1:72401019-72401038 | None:intergenic | 30.0% |
!! | TTACCTACACCTTTTTCATT+TGG | + | chr3_1:72401023-72401042 | Msa0373400:intron | 30.0% |
!! | AGTTTTGGTCCAAATGAAAA+AGG | - | chr3_1:72401035-72401054 | None:intergenic | 30.0% |
!! | TCAAAAACAGCTTAAGTTGA+TGG | + | chr3_1:72401067-72401086 | Msa0373400:intron | 30.0% |
TAATGATGTGGAAATGAAAG+GGG | - | chr3_1:72401170-72401189 | None:intergenic | 30.0% | |
CATAATGATGTGGAAATGAA+AGG | - | chr3_1:72401172-72401191 | None:intergenic | 30.0% | |
TGATTGATTGCATAATGATG+TGG | - | chr3_1:72401182-72401201 | None:intergenic | 30.0% | |
! | TGTAAATCCCCATTTTGTAA+CGG | + | chr3_1:72401279-72401298 | Msa0373400:intron | 30.0% |
! | TGACATTTGATGATAGAAAG+AGG | + | chr3_1:72401569-72401588 | Msa0373400:intron | 30.0% |
! | ATTTGATGATAGAAAGAGGT+AGG | + | chr3_1:72401573-72401592 | Msa0373400:intron | 30.0% |
GAAACGAGAGAAATATGATA+TGG | + | chr3_1:72401663-72401682 | Msa0373400:intron | 30.0% | |
ATGATATGGGCCAAATTAAA+AGG | + | chr3_1:72401677-72401696 | Msa0373400:intron | 30.0% | |
CATATATTATTCCCATTCGT+AGG | - | chr3_1:72401787-72401806 | None:intergenic | 30.0% | |
GAATATATACAACTCTTCAC+TGG | + | chr3_1:72401885-72401904 | Msa0373400:intron | 30.0% | |
TGAGTAAAAATGTGTCATCA+AGG | - | chr3_1:72402044-72402063 | None:intergenic | 30.0% | |
AACCCAAAGCAATGTTAAAA+TGG | + | chr3_1:72402121-72402140 | Msa0373400:CDS | 30.0% | |
GATAGGTTAGCATAAAAAAC+CGG | - | chr3_1:72402191-72402210 | None:intergenic | 30.0% | |
TATCTGCTTGAAAATGTCTT+TGG | - | chr3_1:72402243-72402262 | None:intergenic | 30.0% | |
!! | AGCAACGTATTTTAAGAGTA+TGG | + | chr3_1:72402308-72402327 | Msa0373400:intron | 30.0% |
TAATCATATGTCGTGATTGA+AGG | + | chr3_1:72402400-72402419 | Msa0373400:intron | 30.0% | |
! | AAAATGTCTTTTCAGCTGAA+AGG | + | chr3_1:72402579-72402598 | Msa0373400:intron | 30.0% |
TAAACCTCATATTGCCATAT+TGG | - | chr3_1:72402758-72402777 | None:intergenic | 30.0% | |
GAAGAACTCAATGTTAATGA+TGG | + | chr3_1:72402859-72402878 | Msa0373400:intron | 30.0% | |
! | CATTAAATGTCCATTTTCTG+AGG | - | chr3_1:72403000-72403019 | None:intergenic | 30.0% |
! | TCTTACTTCGTATTTTCCTT+TGG | + | chr3_1:72403047-72403066 | Msa0373400:three_prime_UTR | 30.0% |
ATGGACAAATTACAAACCAA+AGG | - | chr3_1:72403066-72403085 | None:intergenic | 30.0% | |
TTTGTCCATGTATCATGATT+TGG | + | chr3_1:72403077-72403096 | Msa0373400:three_prime_UTR | 30.0% | |
GAATGTAGGAAGATTCAAAT+AGG | - | chr3_1:72403188-72403207 | None:intergenic | 30.0% | |
AATCTTCCTACATTCTTGAA+GGG | + | chr3_1:72403193-72403212 | Msa0373400:three_prime_UTR | 30.0% | |
!! | AGGATTTTGGAAAAAAGTGA+TGG | + | chr3_1:72403252-72403271 | Msa0373400:three_prime_UTR | 30.0% |
TTTCAACTATCACCTTCTAC+TGG | + | chr3_1:72398759-72398778 | Msa0373400:CDS | 35.0% | |
!!! | TATCACCTTCTACTGGTTTT+GGG | + | chr3_1:72398766-72398785 | Msa0373400:CDS | 35.0% |
AGAATCAAGAATCGCCTAAT+TGG | - | chr3_1:72398993-72399012 | None:intergenic | 35.0% | |
! | AAACCCCAAATACGCTTTTA+AGG | + | chr3_1:72399030-72399049 | Msa0373400:CDS | 35.0% |
AGAAAATGACGGTTACCAAA+CGG | + | chr3_1:72399535-72399554 | Msa0373400:intron | 35.0% | |
ATGACTAAAAAGGATCCGTT+TGG | - | chr3_1:72399553-72399572 | None:intergenic | 35.0% | |
! | GCTTTCATGTTTTCTCATGT+TGG | + | chr3_1:72399632-72399651 | Msa0373400:intron | 35.0% |
! | TTTTTCTTATGTCATGCCAC+TGG | + | chr3_1:72399781-72399800 | Msa0373400:intron | 35.0% |
GTTTATGTTGCTAGATCATG+TGG | + | chr3_1:72399820-72399839 | Msa0373400:intron | 35.0% | |
! | TTTTTCTGCTCCACTATGTT+TGG | + | chr3_1:72399951-72399970 | Msa0373400:intron | 35.0% |
TCCACTATGTTTGGATTGAT+TGG | + | chr3_1:72399960-72399979 | Msa0373400:intron | 35.0% | |
TCCAATCAATCCAAACATAG+TGG | - | chr3_1:72399964-72399983 | None:intergenic | 35.0% | |
CTATGTTTGGATTGATTGGA+AGG | + | chr3_1:72399964-72399983 | Msa0373400:intron | 35.0% | |
ATGTTTGGATTGATTGGAAG+GGG | + | chr3_1:72399966-72399985 | Msa0373400:intron | 35.0% | |
TCTTTACCAATTTGTGGCTA+TGG | + | chr3_1:72400069-72400088 | Msa0373400:intron | 35.0% | |
! | TACGATGCCTATTTTCTGTT+TGG | - | chr3_1:72400222-72400241 | None:intergenic | 35.0% |
GAAGGAAATGGATGTTCATA+TGG | + | chr3_1:72400309-72400328 | Msa0373400:intron | 35.0% | |
AGGAAATGGATGTTCATATG+GGG | + | chr3_1:72400311-72400330 | Msa0373400:intron | 35.0% | |
TTAGTAAAATAGGGGAAACC+TGG | + | chr3_1:72400368-72400387 | Msa0373400:intron | 35.0% | |
CTCTGCTTTAGTATAAACCA+TGG | - | chr3_1:72400620-72400639 | None:intergenic | 35.0% | |
! | TTGCTGATGTCAAGATTTTG+TGG | + | chr3_1:72400647-72400666 | Msa0373400:intron | 35.0% |
! | TGAAAAGGGAGAATGAGTTT+TGG | - | chr3_1:72401050-72401069 | None:intergenic | 35.0% |
AATGATGTGGAAATGAAAGG+GGG | - | chr3_1:72401169-72401188 | None:intergenic | 35.0% | |
! | AACAGCTACTCTGTGTTATT+AGG | - | chr3_1:72401244-72401263 | None:intergenic | 35.0% |
AATGCATCCGTTACAAAATG+GGG | - | chr3_1:72401289-72401308 | None:intergenic | 35.0% | |
CAATGCATCCGTTACAAAAT+GGG | - | chr3_1:72401290-72401309 | None:intergenic | 35.0% | |
TTCTACTCTAGTCTCTGTTA+TGG | + | chr3_1:72401378-72401397 | Msa0373400:intron | 35.0% | |
GACTAACATACCAATCTTTG+CGG | - | chr3_1:72401479-72401498 | None:intergenic | 35.0% | |
!! | TTTCTCAACTTTTGTTGTGG+CGG | - | chr3_1:72401532-72401551 | None:intergenic | 35.0% |
AGTCATGTTCCTAAAAGCTT+TGG | - | chr3_1:72401832-72401851 | None:intergenic | 35.0% | |
! | TTTTTGCACCAAATACTGAC+TGG | - | chr3_1:72401968-72401987 | None:intergenic | 35.0% |
TCCCAAGAAAAATGTTGAAC+CGG | + | chr3_1:72402163-72402182 | Msa0373400:intron | 35.0% | |
!! | ACCGGTTCAACATTTTTCTT+GGG | - | chr3_1:72402167-72402186 | None:intergenic | 35.0% |
!!! | TACCGGTTCAACATTTTTCT+TGG | - | chr3_1:72402168-72402187 | None:intergenic | 35.0% |
TTAGCATAAAAAACCGGTAC+CGG | - | chr3_1:72402185-72402204 | None:intergenic | 35.0% | |
CATCAGAGAATCGAAAAGAT+AGG | - | chr3_1:72402208-72402227 | None:intergenic | 35.0% | |
! | CTATCTTTTCGATTCTCTGA+TGG | + | chr3_1:72402206-72402225 | Msa0373400:intron | 35.0% |
TGTTTCAGTCTTTGAATCCA+AGG | - | chr3_1:72402271-72402290 | None:intergenic | 35.0% | |
ATTGAAGGTGATGAGAATAG+TGG | + | chr3_1:72402415-72402434 | Msa0373400:intron | 35.0% | |
TGCCGTATTCCATTAACAAA+AGG | + | chr3_1:72402458-72402477 | Msa0373400:CDS | 35.0% | |
GCCGTATTCCATTAACAAAA+GGG | + | chr3_1:72402459-72402478 | Msa0373400:CDS | 35.0% | |
! | CCCCTTTTGTTAATGGAATA+CGG | - | chr3_1:72402463-72402482 | None:intergenic | 35.0% |
CCGTATTCCATTAACAAAAG+GGG | + | chr3_1:72402460-72402479 | Msa0373400:CDS | 35.0% | |
TTCTACCTGTCTAGTTATTG+TGG | - | chr3_1:72402510-72402529 | None:intergenic | 35.0% | |
! | AGAAGGGTACAAAATCTACT+CGG | + | chr3_1:72402621-72402640 | Msa0373400:CDS | 35.0% |
! | AAGGCTAATAGCAATGGATT+TGG | + | chr3_1:72402657-72402676 | Msa0373400:CDS | 35.0% |
! | CAGACTTTGATCGTGAATTT+TGG | - | chr3_1:72402709-72402728 | None:intergenic | 35.0% |
CAAAATTCACGATCAAAGTC+TGG | + | chr3_1:72402707-72402726 | Msa0373400:CDS | 35.0% | |
GAGGTAAGATTCTACCAATA+TGG | + | chr3_1:72402741-72402760 | Msa0373400:intron | 35.0% | |
TCTACCAATATGGCAATATG+AGG | + | chr3_1:72402751-72402770 | Msa0373400:intron | 35.0% | |
! | ATAGTGAGCACAGTAGTTTT+AGG | + | chr3_1:72403104-72403123 | Msa0373400:three_prime_UTR | 35.0% |
!! | TAGTGAGCACAGTAGTTTTA+GGG | + | chr3_1:72403105-72403124 | Msa0373400:three_prime_UTR | 35.0% |
GAATCTTCCTACATTCTTGA+AGG | + | chr3_1:72403192-72403211 | Msa0373400:three_prime_UTR | 35.0% | |
! | GTTAGCAAGGGTATATTTGT+CGG | + | chr3_1:72403229-72403248 | Msa0373400:three_prime_UTR | 35.0% |
! | GTATATTTGTCGGAGGATTT+TGG | + | chr3_1:72403239-72403258 | Msa0373400:three_prime_UTR | 35.0% |
GCGCTTAAATTTAGCAGTCT+AGG | - | chr3_1:72398406-72398425 | None:intergenic | 40.0% | |
CAATCTTCATCTTCCCTCTT+CGG | + | chr3_1:72398525-72398544 | Msa0373400:CDS | 40.0% | |
AATCTTCATCTTCCCTCTTC+GGG | + | chr3_1:72398526-72398545 | Msa0373400:CDS | 40.0% | |
!! | TGTAGAAGAAGCACCAAAAG+CGG | - | chr3_1:72398646-72398665 | None:intergenic | 40.0% |
!!! | CTATCACCTTCTACTGGTTT+TGG | + | chr3_1:72398765-72398784 | Msa0373400:CDS | 40.0% |
TGAAACCCAAAACCAGTAGA+AGG | - | chr3_1:72398774-72398793 | None:intergenic | 40.0% | |
ATGAAAGCTACGGTTCTGTT+TGG | - | chr3_1:72399620-72399639 | None:intergenic | 40.0% | |
TGTAACAGACCCACAGTTTA+GGG | + | chr3_1:72399689-72399708 | Msa0373400:CDS | 40.0% | |
TACCAACTAGAATGCTCAGT+GGG | - | chr3_1:72399756-72399775 | None:intergenic | 40.0% | |
!! | TCATGCCACTGGCTAATTTT+GGG | + | chr3_1:72399792-72399811 | Msa0373400:intron | 40.0% |
TATTCCCCAAAATTAGCCAG+TGG | - | chr3_1:72399800-72399819 | None:intergenic | 40.0% | |
GTGCATAGAAAGGACTCAAT+TGG | + | chr3_1:72399988-72400007 | Msa0373400:intron | 40.0% | |
AATGGATGTTCATATGGGGT+TGG | + | chr3_1:72400315-72400334 | Msa0373400:intron | 40.0% | |
ATGGATGTTCATATGGGGTT+GGG | + | chr3_1:72400316-72400335 | Msa0373400:intron | 40.0% | |
AACTGAGCTTCCATGATAGT+TGG | + | chr3_1:72400394-72400413 | Msa0373400:intron | 40.0% | |
TTCCATGATAGTTGGATCCA+AGG | + | chr3_1:72400402-72400421 | Msa0373400:intron | 40.0% | |
TTCCTTGGATCCAACTATCA+TGG | - | chr3_1:72400407-72400426 | None:intergenic | 40.0% | |
! | GAATGGATTTGAGTCTTCCT+TGG | - | chr3_1:72400422-72400441 | None:intergenic | 40.0% |
GGTGATAGGAAGTGATATGA+AGG | + | chr3_1:72400718-72400737 | Msa0373400:intron | 40.0% | |
TAGGACAGACGTTGAGAAAA+AGG | + | chr3_1:72400920-72400939 | Msa0373400:intron | 40.0% | |
! | GGTCCAAATGAAAAAGGTGT+AGG | - | chr3_1:72401029-72401048 | None:intergenic | 40.0% |
CCAATGCATCCGTTACAAAA+TGG | - | chr3_1:72401291-72401310 | None:intergenic | 40.0% | |
!!! | CCATTTTGTAACGGATGCAT+TGG | + | chr3_1:72401288-72401307 | Msa0373400:intron | 40.0% |
!! | TGTAACGGATGCATTGGAAA+AGG | + | chr3_1:72401294-72401313 | Msa0373400:intron | 40.0% |
ATGATAGAAAGAGGTAGGAG+TGG | + | chr3_1:72401578-72401597 | Msa0373400:intron | 40.0% | |
ATGGGCCAAATTAAAAGGCA+TGG | + | chr3_1:72401682-72401701 | Msa0373400:intron | 40.0% | |
! | ATAGCATGTGTTTGGGATCA+TGG | + | chr3_1:72401713-72401732 | Msa0373400:intron | 40.0% |
AGAAGGACAATGCACAAACT+TGG | - | chr3_1:72401762-72401781 | None:intergenic | 40.0% | |
TTGTCCTTCTAACCTACGAA+TGG | + | chr3_1:72401772-72401791 | Msa0373400:intron | 40.0% | |
TGTCCTTCTAACCTACGAAT+GGG | + | chr3_1:72401773-72401792 | Msa0373400:intron | 40.0% | |
ATTCCCATTCGTAGGTTAGA+AGG | - | chr3_1:72401779-72401798 | None:intergenic | 40.0% | |
! | TAAGGAGAGCCAAAGCTTTT+AGG | + | chr3_1:72401820-72401839 | Msa0373400:intron | 40.0% |
ATATACAACTCTTCACTGGG+TGG | + | chr3_1:72401889-72401908 | Msa0373400:intron | 40.0% | |
TGTATCCACCAGTCAGTATT+TGG | + | chr3_1:72401957-72401976 | Msa0373400:intron | 40.0% | |
CAGAGACAATGACTTCATCT+TGG | - | chr3_1:72402082-72402101 | None:intergenic | 40.0% | |
! | AACATTTTTCTTGGGAGAGC+AGG | - | chr3_1:72402159-72402178 | None:intergenic | 40.0% |
GAAAAATGTTGAACCGGTAC+CGG | + | chr3_1:72402169-72402188 | Msa0373400:intron | 40.0% | |
TTCAAGCAGATACTCTTCCT+TGG | + | chr3_1:72402251-72402270 | Msa0373400:CDS | 40.0% | |
! | TCAGCTTCCCCTTTTGTTAA+TGG | - | chr3_1:72402470-72402489 | None:intergenic | 40.0% |
ACTAGCCACAATAACTAGAC+AGG | + | chr3_1:72402502-72402521 | Msa0373400:CDS | 40.0% | |
! | TCTTTTCAGCTGAAAGGATC+TGG | + | chr3_1:72402585-72402604 | Msa0373400:intron | 40.0% |
TGGAGCGGAATTATCTAGAA+GGG | + | chr3_1:72402605-72402624 | Msa0373400:CDS | 40.0% | |
ACGGGATATGGAGATTATGA+TGG | + | chr3_1:72402959-72402978 | Msa0373400:CDS | 40.0% | |
TATGGAGATTATGATGGCTG+AGG | + | chr3_1:72402965-72402984 | Msa0373400:CDS | 40.0% | |
ATTATGATGGCTGAGGACAT+GGG | + | chr3_1:72402972-72402991 | Msa0373400:CDS | 40.0% | |
TTCAGCATACATGGTTAGCA+AGG | + | chr3_1:72403216-72403235 | Msa0373400:three_prime_UTR | 40.0% | |
TCAGCATACATGGTTAGCAA+GGG | + | chr3_1:72403217-72403236 | Msa0373400:three_prime_UTR | 40.0% | |
GAAAAAAGTGATGGCATGTG+AGG | + | chr3_1:72403261-72403280 | Msa0373400:three_prime_UTR | 40.0% | |
!! | GAAGAAGGAGTACCGAAAGT+TGG | - | chr3_1:72398576-72398595 | None:intergenic | 45.0% |
! | CTGAAAGCTGGTGTTGAAGA+AGG | - | chr3_1:72398591-72398610 | None:intergenic | 45.0% |
AAAAGCGGGAGTTGAAGAAG+GGG | - | chr3_1:72398631-72398650 | None:intergenic | 45.0% | |
CAAAAGCGGGAGTTGAAGAA+GGG | - | chr3_1:72398632-72398651 | None:intergenic | 45.0% | |
!! | GTAGAAGAAGCACCAAAAGC+GGG | - | chr3_1:72398645-72398664 | None:intergenic | 45.0% |
! | AGAGAACGGTGTTGAGAAGA+GGG | - | chr3_1:72398691-72398710 | None:intergenic | 45.0% |
! | GGTTGTTGTTGAGCAGAGAA+CGG | - | chr3_1:72398705-72398724 | None:intergenic | 45.0% |
TTGTTGCTGCTGCTGTTGTT+GGG | - | chr3_1:72398727-72398746 | None:intergenic | 45.0% | |
TGGGTTTCAGAATTCTACGC+CGG | + | chr3_1:72398785-72398804 | Msa0373400:CDS | 45.0% | |
TGAGAATTTGGAAACGGCGA+AGG | - | chr3_1:72398819-72398838 | None:intergenic | 45.0% | |
TCCAGTTCCATTCTCACTAG+CGG | + | chr3_1:72398866-72398885 | Msa0373400:CDS | 45.0% | |
GTGTAACAGACCCACAGTTT+AGG | + | chr3_1:72399688-72399707 | Msa0373400:CDS | 45.0% | |
! | CTTACATCTGAAACACCAGC+AGG | - | chr3_1:72399720-72399739 | None:intergenic | 45.0% |
TTCCCACTGAGCATTCTAGT+TGG | + | chr3_1:72399751-72399770 | Msa0373400:intron | 45.0% | |
CTACCAACTAGAATGCTCAG+TGG | - | chr3_1:72399757-72399776 | None:intergenic | 45.0% | |
!! | GTCATGCCACTGGCTAATTT+TGG | + | chr3_1:72399791-72399810 | Msa0373400:intron | 45.0% |
!! | CATGCCACTGGCTAATTTTG+GGG | + | chr3_1:72399793-72399812 | Msa0373400:intron | 45.0% |
ATGTTGCTAGATCATGTGGG+CGG | + | chr3_1:72399824-72399843 | Msa0373400:intron | 45.0% | |
! | GTGCTGATAGAGAACGTCTT+TGG | + | chr3_1:72399877-72399896 | Msa0373400:CDS | 45.0% |
CTTTGGCCACAACAAGTTCA+AGG | + | chr3_1:72399894-72399913 | Msa0373400:CDS | 45.0% | |
! | ATTGGAAGGGGTGCATAGAA+AGG | + | chr3_1:72399978-72399997 | Msa0373400:intron | 45.0% |
GTAGCTCCATAGCCACAAAT+TGG | - | chr3_1:72400078-72400097 | None:intergenic | 45.0% | |
AATTCCGATGTTTGGGAGCA+CGG | - | chr3_1:72400116-72400135 | None:intergenic | 45.0% | |
! | TCATATGGGGTTGGGCATTT+TGG | + | chr3_1:72400324-72400343 | Msa0373400:intron | 45.0% |
CAAATGTCTGGCATCATTGC+AGG | - | chr3_1:72400540-72400559 | None:intergenic | 45.0% | |
TTCTGCTCATCAGATGTCCA+TGG | + | chr3_1:72400600-72400619 | Msa0373400:intron | 45.0% | |
ACGGATGCATTGGAAAAGGA+AGG | + | chr3_1:72401298-72401317 | Msa0373400:intron | 45.0% | |
TCAAACAATCCCCTCCACAA+AGG | - | chr3_1:72401437-72401456 | None:intergenic | 45.0% | |
TGTGGAGGGGATTGTTTGAT+TGG | + | chr3_1:72401438-72401457 | Msa0373400:intron | 45.0% | |
AACTTGGATGTGCGTTAGGT+GGG | - | chr3_1:72401746-72401765 | None:intergenic | 45.0% | |
AAACTTGGATGTGCGTTAGG+TGG | - | chr3_1:72401747-72401766 | None:intergenic | 45.0% | |
CACAAACTTGGATGTGCGTT+AGG | - | chr3_1:72401750-72401769 | None:intergenic | 45.0% | |
! | GCAGCAGTCTTTTGCCATTA+TGG | - | chr3_1:72401930-72401949 | None:intergenic | 45.0% |
! | TTGCACCAAATACTGACTGG+TGG | - | chr3_1:72401965-72401984 | None:intergenic | 45.0% |
GAAGGTGATGAGAATAGTGG+AGG | + | chr3_1:72402418-72402437 | Msa0373400:intron | 45.0% | |
CTACTTCCTGTTCTGTTGCT+TGG | + | chr3_1:72402542-72402561 | Msa0373400:intron | 45.0% | |
! | TTCCTGTTCTGTTGCTTGGA+TGG | + | chr3_1:72402546-72402565 | Msa0373400:intron | 45.0% |
TTCCATCCAAGCAACAGAAC+AGG | - | chr3_1:72402551-72402570 | None:intergenic | 45.0% | |
CTGGAGCGGAATTATCTAGA+AGG | + | chr3_1:72402604-72402623 | Msa0373400:CDS | 45.0% | |
CGTGTCAAGGCTAATAGCAA+TGG | + | chr3_1:72402651-72402670 | Msa0373400:CDS | 45.0% | |
TGGTAACTCAGCTCATCTTC+TGG | + | chr3_1:72402677-72402696 | Msa0373400:CDS | 45.0% | |
GGTAACTCAGCTCATCTTCT+GGG | + | chr3_1:72402678-72402697 | Msa0373400:CDS | 45.0% | |
ATGGTCTACTTTGCGAGAAC+AGG | + | chr3_1:72402878-72402897 | Msa0373400:intron | 45.0% | |
ATGGATGCCATAGCAAGACT+TGG | + | chr3_1:72402915-72402934 | Msa0373400:CDS | 45.0% | |
AACACTGCCAAGTCTTGCTA+TGG | - | chr3_1:72402925-72402944 | None:intergenic | 45.0% | |
GATTATGATGGCTGAGGACA+TGG | + | chr3_1:72402971-72402990 | Msa0373400:CDS | 45.0% | |
GACATGGGAACCTCAGAAAA+TGG | + | chr3_1:72402987-72403006 | Msa0373400:CDS | 45.0% | |
! | AGGGACACTTTTCGTGTAGT+CGG | + | chr3_1:72403124-72403143 | Msa0373400:three_prime_UTR | 45.0% |
TGACCCATTTGCGATGTTTG+TGG | + | chr3_1:72403162-72403181 | Msa0373400:three_prime_UTR | 45.0% | |
AGGCCACAAACATCGCAAAT+GGG | - | chr3_1:72403168-72403187 | None:intergenic | 45.0% | |
TAGGCCACAAACATCGCAAA+TGG | - | chr3_1:72403169-72403188 | None:intergenic | 45.0% | |
GCTGAACCCTTCAAGAATGT+AGG | - | chr3_1:72403202-72403221 | None:intergenic | 45.0% | |
CTTGAAGGGTTCAGCATACA+TGG | + | chr3_1:72403207-72403226 | Msa0373400:three_prime_UTR | 45.0% | |
! | AGCAAGGGTATATTTGTCGG+AGG | + | chr3_1:72403232-72403251 | Msa0373400:three_prime_UTR | 45.0% |
!! | ATGTTAAATAATTATATAAA+TGG | + | chr3_1:72400478-72400497 | Msa0373400:intron | 5.0% |
TGAAGATTGACCGCCGAACA+TGG | - | chr3_1:72398514-72398533 | None:intergenic | 50.0% | |
! | AGTGCCGAATGCTGAAGATG+GGG | - | chr3_1:72398553-72398572 | None:intergenic | 50.0% |
!! | GAGTGCCGAATGCTGAAGAT+GGG | - | chr3_1:72398554-72398573 | None:intergenic | 50.0% |
GCATTCGGCACTCCAACTTT+CGG | + | chr3_1:72398561-72398580 | Msa0373400:CDS | 50.0% | |
CCAAAAGCGGGAGTTGAAGA+AGG | - | chr3_1:72398633-72398652 | None:intergenic | 50.0% | |
! | CCTTCTTCAACTCCCGCTTT+TGG | + | chr3_1:72398630-72398649 | Msa0373400:CDS | 50.0% |
GCTTCTTCTACACCCGCTTT+CGG | + | chr3_1:72398654-72398673 | Msa0373400:CDS | 50.0% | |
! | CAGAGAACGGTGTTGAGAAG+AGG | - | chr3_1:72398692-72398711 | None:intergenic | 50.0% |
TGTTGCTGCTGCTGTTGTTG+GGG | - | chr3_1:72398726-72398745 | None:intergenic | 50.0% | |
GTTGTTGCTGCTGCTGTTGT+TGG | - | chr3_1:72398728-72398747 | None:intergenic | 50.0% | |
TTTGGAAACGGCGAAGGTTG+CGG | - | chr3_1:72398813-72398832 | None:intergenic | 50.0% | |
TCCGCTAGTGAGAATGGAAC+TGG | - | chr3_1:72398870-72398889 | None:intergenic | 50.0% | |
TCACGATCCGCTAGTGAGAA+TGG | - | chr3_1:72398876-72398895 | None:intergenic | 50.0% | |
CAGGCTTCACCCTAAACTGT+GGG | - | chr3_1:72399701-72399720 | None:intergenic | 50.0% | |
ATCATGTGGGCGGAAGCTAT+GGG | + | chr3_1:72399834-72399853 | Msa0373400:CDS | 50.0% | |
GAAGCTATGGGGAAGCTTGA+GGG | + | chr3_1:72399846-72399865 | Msa0373400:CDS | 50.0% | |
TATGGGGAAGCTTGAGGGTA+TGG | + | chr3_1:72399851-72399870 | Msa0373400:CDS | 50.0% | |
GGATCTTTCCCAACGCCTTA+AGG | + | chr3_1:72399923-72399942 | Msa0373400:CDS | 50.0% | |
TCTTCCGTGCTCCCAAACAT+CGG | + | chr3_1:72400109-72400128 | Msa0373400:intron | 50.0% | |
CATGGAAGCTCAGTTACACC+AGG | - | chr3_1:72400389-72400408 | None:intergenic | 50.0% | |
TTAGCAGTTCCCGTGTGTCT+AGG | - | chr3_1:72400772-72400791 | None:intergenic | 50.0% | |
! | AAAGGGGGCATGGCATTAAC+AGG | - | chr3_1:72401154-72401173 | None:intergenic | 50.0% |
TGTGGAAATGAAAGGGGGCA+TGG | - | chr3_1:72401164-72401183 | None:intergenic | 50.0% | |
GATCGGCGTCTAATCCTTTG+TGG | + | chr3_1:72401420-72401439 | Msa0373400:intron | 50.0% | |
GGCGTCTAATCCTTTGTGGA+GGG | + | chr3_1:72401424-72401443 | Msa0373400:intron | 50.0% | |
GCGTCTAATCCTTTGTGGAG+GGG | + | chr3_1:72401425-72401444 | Msa0373400:intron | 50.0% | |
GAGTTAGCAGCCGCAAAGAT+TGG | + | chr3_1:72401466-72401485 | Msa0373400:intron | 50.0% | |
! | GCATGTGTTTGGGATCATGG+TGG | + | chr3_1:72401716-72401735 | Msa0373400:intron | 50.0% |
TTCTTGGGAGAGCAGGAGAA+AGG | - | chr3_1:72402152-72402171 | None:intergenic | 50.0% | |
! | GATGAGAATAGTGGAGGCGT+TGG | + | chr3_1:72402424-72402443 | Msa0373400:CDS | 50.0% |
!! | AGAATAGTGGAGGCGTTGGA+GGG | + | chr3_1:72402428-72402447 | Msa0373400:CDS | 50.0% |
TCAGCTGAAAGGATCTGGAG+CGG | + | chr3_1:72402590-72402609 | Msa0373400:intron | 50.0% | |
GGTAGAATCTTACCTCCTGC+AGG | - | chr3_1:72402737-72402756 | None:intergenic | 50.0% | |
! | ACAGGTATTGCAGCAGCAGA+TGG | + | chr3_1:72402896-72402915 | Msa0373400:intron | 50.0% |
! | GACACTTTTCGTGTAGTCGG+CGG | + | chr3_1:72403127-72403146 | Msa0373400:three_prime_UTR | 50.0% |
AGATTGACCGCCGAACATGG+TGG | - | chr3_1:72398511-72398530 | None:intergenic | 55.0% | |
TGAAGATGGGGTCCCGAAGA+GGG | - | chr3_1:72398541-72398560 | None:intergenic | 55.0% | |
GGGACCCCATCTTCAGCATT+CGG | + | chr3_1:72398546-72398565 | Msa0373400:CDS | 55.0% | |
!! | GGAGTGCCGAATGCTGAAGA+TGG | - | chr3_1:72398555-72398574 | None:intergenic | 55.0% |
!! | AAGAAGGGGTACCGAAGCCT+GGG | - | chr3_1:72398617-72398636 | None:intergenic | 55.0% |
TCTTCTACACCCGCTTTCGG+TGG | + | chr3_1:72398657-72398676 | Msa0373400:CDS | 55.0% | |
GAAGAACCACCACCGAAAGC+GGG | - | chr3_1:72398669-72398688 | None:intergenic | 55.0% | |
GGAAGAACCACCACCGAAAG+CGG | - | chr3_1:72398670-72398689 | None:intergenic | 55.0% | |
GCAGGCTTCACCCTAAACTG+TGG | - | chr3_1:72399702-72399721 | None:intergenic | 55.0% | |
! | CAGTTTAGGGTGAAGCCTGC+TGG | + | chr3_1:72399702-72399721 | Msa0373400:CDS | 55.0% |
GATCATGTGGGCGGAAGCTA+TGG | + | chr3_1:72399833-72399852 | Msa0373400:intron | 55.0% | |
TCATGTGGGCGGAAGCTATG+GGG | + | chr3_1:72399835-72399854 | Msa0373400:CDS | 55.0% | |
GGAAGCTATGGGGAAGCTTG+AGG | + | chr3_1:72399845-72399864 | Msa0373400:CDS | 55.0% | |
! | GATGTTTGGGAGCACGGAAG+AGG | - | chr3_1:72400110-72400129 | None:intergenic | 55.0% |
! | GCGTCGGTAACCTAGACACA+CGG | + | chr3_1:72400759-72400778 | Msa0373400:intron | 55.0% |
CGTCGGTAACCTAGACACAC+GGG | + | chr3_1:72400760-72400779 | Msa0373400:intron | 55.0% | |
CGGCGTCTAATCCTTTGTGG+AGG | + | chr3_1:72401423-72401442 | Msa0373400:intron | 55.0% | |
!! | GAGAATAGTGGAGGCGTTGG+AGG | + | chr3_1:72402427-72402446 | Msa0373400:CDS | 55.0% |
ACTCGGCGTATCTCGTGTCA+AGG | + | chr3_1:72402638-72402657 | Msa0373400:CDS | 55.0% | |
TCAAAGTCTGGCTGACCTGC+AGG | + | chr3_1:72402719-72402738 | Msa0373400:CDS | 55.0% | |
!! | GTGTTCTGAAGCGAGACGCA+CGG | + | chr3_1:72402940-72402959 | Msa0373400:CDS | 55.0% |
!! | TGTTCTGAAGCGAGACGCAC+GGG | + | chr3_1:72402941-72402960 | Msa0373400:CDS | 55.0% |
ACGCCGCACACCACCATGTT+CGG | + | chr3_1:72398498-72398517 | Msa0373400:exon | 60.0% | |
CTGAAGATGGGGTCCCGAAG+AGG | - | chr3_1:72398542-72398561 | None:intergenic | 60.0% | |
ACACCAGCTTTCAGCACCCC+AGG | + | chr3_1:72398597-72398616 | Msa0373400:CDS | 60.0% | |
!! | AAGCCTGGGGTGCTGAAAGC+TGG | - | chr3_1:72398603-72398622 | None:intergenic | 60.0% |
GCTTTCAGCACCCCAGGCTT+CGG | + | chr3_1:72398603-72398622 | Msa0373400:CDS | 60.0% | |
!! | AGAAGGGGTACCGAAGCCTG+GGG | - | chr3_1:72398616-72398635 | None:intergenic | 60.0% |
!! | GAAGAAGGGGTACCGAAGCC+TGG | - | chr3_1:72398618-72398637 | None:intergenic | 60.0% |
TCTACACCCGCTTTCGGTGG+TGG | + | chr3_1:72398660-72398679 | Msa0373400:CDS | 60.0% | |
!! | GTGGAGGCGTTGGAGGGAAA+AGG | + | chr3_1:72402434-72402453 | Msa0373400:CDS | 60.0% |
AAGTCTGGCTGACCTGCAGG+AGG | + | chr3_1:72402722-72402741 | Msa0373400:CDS | 60.0% | |
GAAGCGAGACGCACGGGATA+TGG | + | chr3_1:72402947-72402966 | Msa0373400:CDS | 60.0% | |
! | CCGCCGAACATGGTGGTGTG+CGG | - | chr3_1:72398504-72398523 | None:intergenic | 65.0% |
CCGCACACCACCATGTTCGG+CGG | + | chr3_1:72398501-72398520 | Msa0373400:exon | 65.0% | |
AACGGCGAAGGTTGCGGCGC+CGG | - | chr3_1:72398807-72398826 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 72398375 | 72403324 | 72398375 | ID=Msa0373400;Name=Msa0373400 |
chr3_1 | mRNA | 72398375 | 72403324 | 72398375 | ID=Msa0373400-mRNA-1;Parent=Msa0373400;Name=Msa0373400-mRNA-1;_AED=0.09;_eAED=0.09;_QI=138|1|1|1|1|1|9|302|380 |
chr3_1 | exon | 72398375 | 72398902 | 72398375 | ID=Msa0373400-mRNA-1:exon:16171;Parent=Msa0373400-mRNA-1 |
chr3_1 | exon | 72398998 | 72399051 | 72398998 | ID=Msa0373400-mRNA-1:exon:16172;Parent=Msa0373400-mRNA-1 |
chr3_1 | exon | 72399675 | 72399734 | 72399675 | ID=Msa0373400-mRNA-1:exon:16173;Parent=Msa0373400-mRNA-1 |
chr3_1 | exon | 72399834 | 72399944 | 72399834 | ID=Msa0373400-mRNA-1:exon:16174;Parent=Msa0373400-mRNA-1 |
chr3_1 | exon | 72402077 | 72402142 | 72402077 | ID=Msa0373400-mRNA-1:exon:16175;Parent=Msa0373400-mRNA-1 |
chr3_1 | exon | 72402238 | 72402324 | 72402238 | ID=Msa0373400-mRNA-1:exon:16176;Parent=Msa0373400-mRNA-1 |
chr3_1 | exon | 72402422 | 72402523 | 72402422 | ID=Msa0373400-mRNA-1:exon:16177;Parent=Msa0373400-mRNA-1 |
chr3_1 | exon | 72402594 | 72402743 | 72402594 | ID=Msa0373400-mRNA-1:exon:16178;Parent=Msa0373400-mRNA-1 |
chr3_1 | exon | 72402900 | 72403324 | 72402900 | ID=Msa0373400-mRNA-1:exon:16179;Parent=Msa0373400-mRNA-1 |
chr3_1 | five_prime_UTR | 72398375 | 72398512 | 72398375 | ID=Msa0373400-mRNA-1:five_prime_utr;Parent=Msa0373400-mRNA-1 |
chr3_1 | CDS | 72398513 | 72398902 | 72398513 | ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1 |
chr3_1 | CDS | 72398998 | 72399051 | 72398998 | ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1 |
chr3_1 | CDS | 72399675 | 72399734 | 72399675 | ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1 |
chr3_1 | CDS | 72399834 | 72399944 | 72399834 | ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1 |
chr3_1 | CDS | 72402077 | 72402142 | 72402077 | ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1 |
chr3_1 | CDS | 72402238 | 72402324 | 72402238 | ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1 |
chr3_1 | CDS | 72402422 | 72402523 | 72402422 | ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1 |
chr3_1 | CDS | 72402594 | 72402743 | 72402594 | ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1 |
chr3_1 | CDS | 72402900 | 72403022 | 72402900 | ID=Msa0373400-mRNA-1:cds;Parent=Msa0373400-mRNA-1 |
chr3_1 | three_prime_UTR | 72403023 | 72403324 | 72403023 | ID=Msa0373400-mRNA-1:three_prime_utr;Parent=Msa0373400-mRNA-1 |
Gene Sequence |
Protein sequence |