Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421960 | AES72057.2 | 99.211 | 380 | 3 | 0 | 1 | 380 | 1 | 380 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421960 | sp|Q8GYF7|NUP54_ARATH | 67.560 | 373 | 106 | 4 | 10 | 370 | 1 | 370 | 2.72e-163 | 465 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421960 | G7JC14 | 99.211 | 380 | 3 | 0 | 1 | 380 | 1 | 380 | 0.0 | 764 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373400 | Msa0421960 | 0.946746 | 2.558499e-105 | -8.615850e-47 |
| Msa0421960 | Msa0514370 | 0.944356 | 2.266556e-103 | -8.615850e-47 |
| Msa0421960 | Msa0829860 | 0.928332 | 3.354375e-92 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421960 | MtrunA17_Chr3g0122701 | 99.211 | 380 | 3 | 0 | 1 | 380 | 1 | 380 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0421960 | AT1G24310.1 | 67.560 | 373 | 106 | 4 | 10 | 370 | 1 | 370 | 2.76e-164 | 465 |
Find 133 sgRNAs with CRISPR-Local
Find 353 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACCTTAAAAGCGTATT+TGG | 0.127759 | 3_2:-70998909 | None:intergenic |
| TGAGTAGTCAATTGAGAATT+TGG | 0.173685 | 3_2:-70998708 | None:intergenic |
| CTATCACCTTCTACTGGTTT+TGG | 0.175988 | 3_2:+70998645 | Msa0421960:CDS |
| CAGACTTTGATCGTGAATTT+TGG | 0.193440 | 3_2:-71002553 | None:intergenic |
| GTATATTTGTCGGAGGATTT+TGG | 0.218217 | 3_2:+71003086 | Msa0421960:three_prime_UTR |
| TGGTAACTCAGCTCATCTTC+TGG | 0.278398 | 3_2:+71002524 | Msa0421960:CDS |
| TATCTGCTTGAAAATGTCTT+TGG | 0.301845 | 3_2:-71002087 | None:intergenic |
| AAGGCTAATAGCAATGAATT+TGG | 0.302986 | 3_2:+71002504 | Msa0421960:CDS |
| GAAGCGAGACGCACGGGATA+TGG | 0.316915 | 3_2:+71002794 | Msa0421960:CDS |
| AAAACCTTAAAAGCGTATTT+GGG | 0.319798 | 3_2:-70998908 | None:intergenic |
| CAATCTTCATCTTCCCTCTT+CGG | 0.322179 | 3_2:+70998405 | Msa0421960:CDS |
| TTTGTCCATGTATCATGATT+TGG | 0.323361 | 3_2:+71002924 | Msa0421960:three_prime_UTR |
| AACCCAAAGCAATGTTAAAA+TGG | 0.323703 | 3_2:+71001968 | Msa0421960:CDS |
| GTGTAACAGACCCACAGTTT+AGG | 0.324603 | 3_2:+70999563 | Msa0421960:CDS |
| GTTGTTGCTGCTGCTGTTGT+TGG | 0.325620 | 3_2:-70998605 | None:intergenic |
| GACATGGGAACCTCAGAAAA+TGG | 0.331518 | 3_2:+71002834 | Msa0421960:CDS |
| TTGTTGCTGCTGCTGTTGTT+GGG | 0.347224 | 3_2:-70998604 | None:intergenic |
| GGTAACTCAGCTCATCTTCT+GGG | 0.368462 | 3_2:+71002525 | Msa0421960:CDS |
| CCTTCTTCAACTCCCGCTTT+TGG | 0.369276 | 3_2:+70998510 | Msa0421960:CDS |
| GGATCTTTCCCAACGCCTTA+AGG | 0.376166 | 3_2:+70999798 | Msa0421960:CDS |
| TGTAACAGACCCACAGTTTA+GGG | 0.381508 | 3_2:+70999564 | Msa0421960:CDS |
| GCTTCTTCTACACCCGCTTT+CGG | 0.390655 | 3_2:+70998534 | Msa0421960:CDS |
| GAATGTAGGAAGATTCAAAT+AGG | 0.392916 | 3_2:-71003032 | None:intergenic |
| AATCTTCATCTTCCCTCTTC+GGG | 0.396928 | 3_2:+70998406 | Msa0421960:CDS |
| CTTGAAGGGTTCAGCATACA+TGG | 0.400271 | 3_2:+71003054 | Msa0421960:three_prime_UTR |
| GATCATGTGGGCGGAAGCTA+TGG | 0.409669 | 3_2:+70999708 | Msa0421960:intron |
| CTGGAGCGGAATTATCTAGA+AGG | 0.413522 | 3_2:+71002451 | Msa0421960:CDS |
| GTGCTGATAGAGAACGTCTT+TGG | 0.413609 | 3_2:+70999752 | Msa0421960:CDS |
| AAAATTTACCTTAAGGCGTT+GGG | 0.422159 | 3_2:-70999806 | None:intergenic |
| AACGGCGAAGGTTGCGGCGC+CGG | 0.423275 | 3_2:-70998684 | None:intergenic |
| GCATTCGGCACTCCAACTTT+CGG | 0.423472 | 3_2:+70998441 | Msa0421960:CDS |
| GAAGAAGGGGTACCGAAGCC+TGG | 0.427369 | 3_2:-70998495 | None:intergenic |
| TAGGCCACAAACATCGCAAA+TGG | 0.427930 | 3_2:-71003013 | None:intergenic |
| GAATCTTCCTACATTCTTGA+AGG | 0.428611 | 3_2:+71003039 | Msa0421960:three_prime_UTR |
| TTCTCAATTGACTACTCAAA+TGG | 0.443096 | 3_2:+70998713 | Msa0421960:CDS |
| TGCCGTATTCCATTAACAAA+AGG | 0.445652 | 3_2:+71002305 | Msa0421960:CDS |
| GCTTTCAGCACCCCAGGCTT+CGG | 0.445658 | 3_2:+70998483 | Msa0421960:CDS |
| TCTACACCCGCTTTCGGTGG+TGG | 0.448947 | 3_2:+70998540 | Msa0421960:CDS |
| GGGACCCCATCTTCAGCATT+CGG | 0.452689 | 3_2:+70998426 | Msa0421960:CDS |
| TGAAACCCAAAACCAGTAGA+AGG | 0.453433 | 3_2:-70998651 | None:intergenic |
| GAGAATAGTGGAGGCGTTGG+AGG | 0.455797 | 3_2:+71002274 | Msa0421960:CDS |
| TGACCCATTTGCGATGTTTG+TGG | 0.457218 | 3_2:+71003009 | Msa0421960:three_prime_UTR |
| TTCAAGCAGATACTCTTCCT+TGG | 0.459845 | 3_2:+71002098 | Msa0421960:CDS |
| CTTTGGCCACAACAAGTTCA+AGG | 0.461110 | 3_2:+70999769 | Msa0421960:CDS |
| ACGCCGCACACCACCATGTT+CGG | 0.462481 | 3_2:+70998378 | Msa0421960:exon |
| AAGCCTGGGGTGCTGAAAGC+TGG | 0.465129 | 3_2:-70998480 | None:intergenic |
| CAAAATTCACGATCAAAGTC+TGG | 0.467189 | 3_2:+71002554 | Msa0421960:CDS |
| TCCGCTAGTGAGAATGGAAC+TGG | 0.468365 | 3_2:-70998747 | None:intergenic |
| TATGGGGAAGCTTGAGGGTA+TGG | 0.469058 | 3_2:+70999726 | Msa0421960:CDS |
| CAGTTTAGGGTGAAGCCTGC+TGG | 0.475949 | 3_2:+70999577 | Msa0421960:CDS |
| TTTGGAAACGGCGAAGGTTG+CGG | 0.476917 | 3_2:-70998690 | None:intergenic |
| TCAAAGTCTGGCTGACCTGC+AGG | 0.480292 | 3_2:+71002566 | Msa0421960:CDS |
| GTCAATTGAGAATTTGGAAA+CGG | 0.480882 | 3_2:-70998702 | None:intergenic |
| GATGAGAATAGTGGAGGCGT+TGG | 0.481773 | 3_2:+71002271 | Msa0421960:CDS |
| TCACGATCCGCTAGTGAGAA+TGG | 0.483587 | 3_2:-70998753 | None:intergenic |
| GCCGTATTCCATTAACAAAA+GGG | 0.485365 | 3_2:+71002306 | Msa0421960:CDS |
| TTTCAACTATCACCTTCTAC+TGG | 0.487130 | 3_2:+70998639 | Msa0421960:CDS |
| GAAGCTATGGGGAAGCTTGA+GGG | 0.490154 | 3_2:+70999721 | Msa0421960:CDS |
| CAGAGACAATGACTTCATCT+TGG | 0.494474 | 3_2:-71001926 | None:intergenic |
| GTTAGCAAGGGTATATTTGT+CGG | 0.495850 | 3_2:+71003076 | Msa0421960:three_prime_UTR |
| AAGAAGGGGTACCGAAGCCT+GGG | 0.499083 | 3_2:-70998494 | None:intergenic |
| TTAAAACCTTGAACTTGTTG+TGG | 0.500336 | 3_2:-70999775 | None:intergenic |
| GTGGAGGCGTTGGAGGGAAA+AGG | 0.503729 | 3_2:+71002281 | Msa0421960:CDS |
| GCGCTTAAATTTAGCAGTCT+AGG | 0.504211 | 3_2:-70998283 | None:intergenic |
| CCAAAAGCGGGAGTTGAAGA+AGG | 0.506648 | 3_2:-70998510 | None:intergenic |
| ACACCAGCTTTCAGCACCCC+AGG | 0.510458 | 3_2:+70998477 | Msa0421960:CDS |
| TTCTACCTGTCTAGTTATTG+TGG | 0.512168 | 3_2:-71002354 | None:intergenic |
| TGTTGCTGCTGCTGTTGTTG+GGG | 0.517011 | 3_2:-70998603 | None:intergenic |
| AGAGAACGGTGTTGAGAAGA+GGG | 0.519091 | 3_2:-70998568 | None:intergenic |
| GATTATGATGGCTGAGGACA+TGG | 0.520825 | 3_2:+71002818 | Msa0421960:CDS |
| TGTTTCAGTCTTTGAATCCA+AGG | 0.521920 | 3_2:-71002115 | None:intergenic |
| ACAGGTATTGCAGCAGCAGA+TGG | 0.527438 | 3_2:+71002743 | Msa0421960:intron |
| GATTCTTATAAAGAAGATGC+TGG | 0.529366 | 3_2:+70998881 | Msa0421960:CDS |
| TGAGAATTTGGAAACGGCGA+AGG | 0.531345 | 3_2:-70998696 | None:intergenic |
| AATCTTCCTACATTCTTGAA+GGG | 0.531796 | 3_2:+71003040 | Msa0421960:three_prime_UTR |
| GGTAGAATCTTACCTCCTGC+AGG | 0.538215 | 3_2:-71002581 | None:intergenic |
| GGAGTGCCGAATGCTGAAGA+TGG | 0.538730 | 3_2:-70998432 | None:intergenic |
| ACTAGCCACAATAACTAGAC+AGG | 0.539256 | 3_2:+71002349 | Msa0421960:CDS |
| ATCATGTGGGCGGAAGCTAT+GGG | 0.541380 | 3_2:+70999709 | Msa0421960:CDS |
| CTGAAGATGGGGTCCCGAAG+AGG | 0.544355 | 3_2:-70998419 | None:intergenic |
| CAGAGAACGGTGTTGAGAAG+AGG | 0.544554 | 3_2:-70998569 | None:intergenic |
| GGAAGCTATGGGGAAGCTTG+AGG | 0.544713 | 3_2:+70999720 | Msa0421960:CDS |
| GTTTATGTTGCTAGATCATG+TGG | 0.544933 | 3_2:+70999695 | Msa0421960:intron |
| CTGAAAGCTGGTGTTGAAGA+AGG | 0.547067 | 3_2:-70998468 | None:intergenic |
| AGGCCACAAACATCGCAAAT+GGG | 0.549395 | 3_2:-71003012 | None:intergenic |
| TATTACCAAATCATGATACA+TGG | 0.551515 | 3_2:-71002929 | None:intergenic |
| AGAATAGTGGAGGCGTTGGA+GGG | 0.552709 | 3_2:+71002275 | Msa0421960:CDS |
| GAGTGCCGAATGCTGAAGAT+GGG | 0.561315 | 3_2:-70998431 | None:intergenic |
| TGTTCTGAAGCGAGACGCAC+GGG | 0.561337 | 3_2:+71002788 | Msa0421960:CDS |
| AACACTGCCAAGTCTTGCTA+TGG | 0.563127 | 3_2:-71002769 | None:intergenic |
| GAAGAACCACCACCGAAAGC+GGG | 0.563527 | 3_2:-70998546 | None:intergenic |
| GAAGAAGGAGTACCGAAAGT+TGG | 0.564163 | 3_2:-70998453 | None:intergenic |
| GTGTTCTGAAGCGAGACGCA+CGG | 0.568554 | 3_2:+71002787 | Msa0421960:CDS |
| GGAAGAACCACCACCGAAAG+CGG | 0.569387 | 3_2:-70998547 | None:intergenic |
| TCCAGTTCCATTCTCACTAG+CGG | 0.572002 | 3_2:+70998746 | Msa0421960:CDS |
| TGAAGATGGGGTCCCGAAGA+GGG | 0.572735 | 3_2:-70998418 | None:intergenic |
| TTCAGCATACATGGTTAGCA+AGG | 0.574227 | 3_2:+71003063 | Msa0421960:three_prime_UTR |
| GCTGAACCCTTCAAGAATGT+AGG | 0.576573 | 3_2:-71003046 | None:intergenic |
| TGAAGATTGACCGCCGAACA+TGG | 0.577493 | 3_2:-70998391 | None:intergenic |
| ATTGAAGGTGATGAGAATAG+TGG | 0.583298 | 3_2:+71002262 | Msa0421960:intron |
| CAAAAGCGGGAGTTGAAGAA+GGG | 0.585231 | 3_2:-70998509 | None:intergenic |
| GTAGAAGAAGCACCAAAAGC+GGG | 0.586298 | 3_2:-70998522 | None:intergenic |
| TCTTCTACACCCGCTTTCGG+TGG | 0.586639 | 3_2:+70998537 | Msa0421960:CDS |
| ACGGGATATGGAGATTATGA+TGG | 0.590444 | 3_2:+71002806 | Msa0421960:CDS |
| TATGGAGATTATGATGGCTG+AGG | 0.590797 | 3_2:+71002812 | Msa0421960:CDS |
| ATGGATGCCATAGCAAGACT+TGG | 0.599180 | 3_2:+71002762 | Msa0421960:CDS |
| AGCAAGGGTATATTTGTCGG+AGG | 0.606225 | 3_2:+71003079 | Msa0421960:three_prime_UTR |
| ATGGACAAATTACAAACCAA+AGG | 0.608304 | 3_2:-71002910 | None:intergenic |
| CAGGCTTCACCCTAAACTGT+GGG | 0.612681 | 3_2:-70999573 | None:intergenic |
| ATTATGATGGCTGAGGACAT+GGG | 0.618742 | 3_2:+71002819 | Msa0421960:CDS |
| CTTACATCTGAAACACCAGC+AGG | 0.625885 | 3_2:-70999592 | None:intergenic |
| CCGTATTCCATTAACAAAAG+GGG | 0.630334 | 3_2:+71002307 | Msa0421960:CDS |
| AAACCTTAAAAGCGTATTTG+GGG | 0.630724 | 3_2:-70998907 | None:intergenic |
| TGGAGCGGAATTATCTAGAA+GGG | 0.631061 | 3_2:+71002452 | Msa0421960:CDS |
| GGTTGTTGTTGAGCAGAGAA+CGG | 0.632380 | 3_2:-70998582 | None:intergenic |
| TCAGCTGAAAGGATCTGGAG+CGG | 0.638114 | 3_2:+71002437 | Msa0421960:intron |
| CCGCCGAACATGGTGGTGTG+CGG | 0.642470 | 3_2:-70998381 | None:intergenic |
| TGTAGAAGAAGCACCAAAAG+CGG | 0.643383 | 3_2:-70998523 | None:intergenic |
| GCAGGCTTCACCCTAAACTG+TGG | 0.646030 | 3_2:-70999574 | None:intergenic |
| GAAGGTGATGAGAATAGTGG+AGG | 0.650075 | 3_2:+71002265 | Msa0421960:intron |
| ACTCGGCGTATCTCGTGTCA+AGG | 0.651033 | 3_2:+71002485 | Msa0421960:CDS |
| AGAAGGGTACAAAATCTACT+CGG | 0.654843 | 3_2:+71002468 | Msa0421960:CDS |
| TGGGTTTCAGAATTCTACGC+CGG | 0.655438 | 3_2:+70998665 | Msa0421960:CDS |
| CCGCACACCACCATGTTCGG+CGG | 0.655972 | 3_2:+70998381 | Msa0421960:exon |
| AAGTCTGGCTGACCTGCAGG+AGG | 0.657558 | 3_2:+71002569 | Msa0421960:CDS |
| TCAGCATACATGGTTAGCAA+GGG | 0.662415 | 3_2:+71003064 | Msa0421960:three_prime_UTR |
| TCATGTGGGCGGAAGCTATG+GGG | 0.675093 | 3_2:+70999710 | Msa0421960:CDS |
| TTTATGTTGCTAGATCATGT+GGG | 0.694092 | 3_2:+70999696 | Msa0421960:intron |
| ATGTTGCTAGATCATGTGGG+CGG | 0.703435 | 3_2:+70999699 | Msa0421960:intron |
| AAAAGCGGGAGTTGAAGAAG+GGG | 0.703806 | 3_2:-70998508 | None:intergenic |
| AGAAGGGGTACCGAAGCCTG+GGG | 0.706896 | 3_2:-70998493 | None:intergenic |
| AGTGCCGAATGCTGAAGATG+GGG | 0.747720 | 3_2:-70998430 | None:intergenic |
| AGATTGACCGCCGAACATGG+TGG | 0.846340 | 3_2:-70998388 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTCATTTAAAATTTATT+TGG | + | chr3_2:70998944-70998963 | Msa0421960:intron | 10.0% |
| !!! | TAAAATTTATTTGGAATTAT+AGG | + | chr3_2:70998953-70998972 | Msa0421960:intron | 10.0% |
| !!! | AAAATTTATTTGGAATTATA+GGG | + | chr3_2:70998954-70998973 | Msa0421960:intron | 10.0% |
| !!! | AGTTTAATTTTTAGTAAAAT+AGG | + | chr3_2:71000207-71000226 | Msa0421960:intron | 10.0% |
| !!! | GTTTAATTTTTAGTAAAATA+GGG | + | chr3_2:71000208-71000227 | Msa0421960:intron | 10.0% |
| !!! | TTTAATTTTTAGTAAAATAG+GGG | + | chr3_2:71000209-71000228 | Msa0421960:intron | 10.0% |
| !!! | AAACTAGTTGATTAAATTTT+TGG | + | chr3_2:70999185-70999204 | Msa0421960:intron | 15.0% |
| !!! | AGCTTATAACTTATTTTTAT+TGG | - | chr3_2:70999386-70999405 | None:intergenic | 15.0% |
| !!! | TTTTTTATAGTGTTTAAAAC+AGG | + | chr3_2:70999888-70999907 | Msa0421960:intron | 15.0% |
| !!! | TTTTTATAGTGTTTAAAACA+GGG | + | chr3_2:70999889-70999908 | Msa0421960:intron | 15.0% |
| !!! | AATATTTGGAAATTTTATGA+TGG | - | chr3_2:71000029-71000048 | None:intergenic | 15.0% |
| !! | ATCATAAAATTTCCAAATAT+TGG | + | chr3_2:71000028-71000047 | Msa0421960:intron | 15.0% |
| !! | TGTTTATAATAGATTTAGAA+TGG | - | chr3_2:71000288-71000307 | None:intergenic | 15.0% |
| !! | ATTTATTCTAACAAGAAAAT+GGG | - | chr3_2:71000648-71000667 | None:intergenic | 15.0% |
| !! | TATTTATTCTAACAAGAAAA+TGG | - | chr3_2:71000649-71000668 | None:intergenic | 15.0% |
| !! | TTAATTAACAAGTTAAAACA+AGG | + | chr3_2:71000691-71000710 | Msa0421960:intron | 15.0% |
| !! | CTAAAACAACTAAAATTAAT+AGG | - | chr3_2:71001491-71001510 | None:intergenic | 15.0% |
| !! | TATTGATCTAATACTAAAAT+TGG | - | chr3_2:71001705-71001724 | None:intergenic | 15.0% |
| !!! | TTATCTTTGTTTTTCCAATT+AGG | + | chr3_2:70998850-70998869 | Msa0421960:intron | 20.0% |
| !! | TTTGGATAAATAGCTTAATT+AGG | - | chr3_2:70999000-70999019 | None:intergenic | 20.0% |
| !!! | TTGATTAAATTTTTGGTGTT+TGG | + | chr3_2:70999192-70999211 | Msa0421960:intron | 20.0% |
| !! | AGAAAATAAAACGTATTAGA+TGG | - | chr3_2:70999927-70999946 | None:intergenic | 20.0% |
| !!! | TTATTTTCTTTACCAATTTG+TGG | + | chr3_2:70999938-70999957 | Msa0421960:intron | 20.0% |
| !! | AAAATTTCCAAATATTGGTA+TGG | + | chr3_2:71000033-71000052 | Msa0421960:intron | 20.0% |
| !! | TATTTAACATCTAAATTGCA+AGG | - | chr3_2:71000317-71000336 | None:intergenic | 20.0% |
| !! | AGAAATGTCATGTAATTTAT+AGG | - | chr3_2:71001209-71001228 | None:intergenic | 20.0% |
| !!! | ACATTTTAAATGAAGTTGAT+CGG | + | chr3_2:71001250-71001269 | Msa0421960:intron | 20.0% |
| !! | TTATTAATATAGCATGTGTT+TGG | + | chr3_2:71001552-71001571 | Msa0421960:intron | 20.0% |
| !! | TATTAATATAGCATGTGTTT+GGG | + | chr3_2:71001553-71001572 | Msa0421960:intron | 20.0% |
| !! | TATATTGAAATATGCCATAA+TGG | + | chr3_2:71001760-71001779 | Msa0421960:intron | 20.0% |
| !! | AATTAGAAACTGTTGAAATA+CGG | + | chr3_2:71001864-71001883 | Msa0421960:intron | 20.0% |
| !! | AAAACCTTAAAAGCGTATTT+GGG | - | chr3_2:70998911-70998930 | None:intergenic | 25.0% |
| ! | ATGATAAATTAGGTTCTGTT+TGG | - | chr3_2:70999018-70999037 | None:intergenic | 25.0% |
| ! | GAAACAGCTTATGATAAATT+AGG | - | chr3_2:70999028-70999047 | None:intergenic | 25.0% |
| !! | AGACAATTTAAGACAGATTA+TGG | - | chr3_2:70999050-70999069 | None:intergenic | 25.0% |
| ! | AGCAGAAAAAATTTACCTTA+AGG | - | chr3_2:70999816-70999835 | None:intergenic | 25.0% |
| ! | AAAGTTTAATTCCGATGTTT+GGG | - | chr3_2:70999998-71000017 | None:intergenic | 25.0% |
| ! | AAAAGTTTAATTCCGATGTT+TGG | - | chr3_2:70999999-71000018 | None:intergenic | 25.0% |
| ! | AAAACTACCATACCAATATT+TGG | - | chr3_2:71000043-71000062 | None:intergenic | 25.0% |
| ! | TAATGATAGGTGAAATTGAA+TGG | - | chr3_2:71000069-71000088 | None:intergenic | 25.0% |
| ! | TAGATATCCAAACAGAAAAT+AGG | + | chr3_2:71000087-71000106 | Msa0421960:intron | 25.0% |
| !! | CTTGAATATACGATTTTAGA+AGG | + | chr3_2:71000140-71000159 | Msa0421960:intron | 25.0% |
| !!! | TATACGATTTTAGAAGGAAA+TGG | + | chr3_2:71000146-71000165 | Msa0421960:intron | 25.0% |
| ! | TAAAATCAAGTTCAAATGTC+TGG | - | chr3_2:71000401-71000420 | None:intergenic | 25.0% |
| !! | GTTCTATTTTCAAAACAAAC+TGG | + | chr3_2:71000546-71000565 | Msa0421960:intron | 25.0% |
| ! | TTAAAACAAGGCATAACATA+TGG | + | chr3_2:71000703-71000722 | Msa0421960:intron | 25.0% |
| ! | TAAAACAAGGCATAACATAT+GGG | + | chr3_2:71000704-71000723 | Msa0421960:intron | 25.0% |
| ! | TGTGAAAAGTAGAACAAAAT+AGG | + | chr3_2:71000748-71000767 | Msa0421960:intron | 25.0% |
| ! | GTCAATTCTAAGTAAAATGT+TGG | + | chr3_2:71000789-71000808 | Msa0421960:intron | 25.0% |
| !!! | ACTTAAGCTGTTTTTGAAAA+GGG | - | chr3_2:71000911-71000930 | None:intergenic | 25.0% |
| !!! | AACTTAAGCTGTTTTTGAAA+AGG | - | chr3_2:71000912-71000931 | None:intergenic | 25.0% |
| !! | GAAATATATGCTTTTCTGAA+AGG | - | chr3_2:71000965-71000984 | None:intergenic | 25.0% |
| ! | ATAATGATGTGGAAATGAAA+GGG | - | chr3_2:71001018-71001037 | None:intergenic | 25.0% |
| !!! | TTTTTTCTCAACTTTTGTTG+TGG | - | chr3_2:71001382-71001401 | None:intergenic | 25.0% |
| ! | AAACGAGAGAAATATGATAT+GGG | + | chr3_2:71001511-71001530 | Msa0421960:intron | 25.0% |
| !!! | AATAACCATGCCTTTTAATT+TGG | - | chr3_2:71001537-71001556 | None:intergenic | 25.0% |
| ! | ATGGGAATAATATATGCTAA+AGG | + | chr3_2:71001638-71001657 | Msa0421960:intron | 25.0% |
| ! | ATATGCTAAAGGATAAGTTA+AGG | + | chr3_2:71001649-71001668 | Msa0421960:intron | 25.0% |
| ! | AATATATACAACTCTTCACT+GGG | + | chr3_2:71001733-71001752 | Msa0421960:intron | 25.0% |
| ! | ATTAGAAACTGTTGAAATAC+GGG | + | chr3_2:71001865-71001884 | Msa0421960:intron | 25.0% |
| !!! | TACCATTTTAACATTGCTTT+GGG | - | chr3_2:71001973-71001992 | None:intergenic | 25.0% |
| !!! | ATACCATTTTAACATTGCTT+TGG | - | chr3_2:71001974-71001993 | None:intergenic | 25.0% |
| ! | ATATGATTAGACATAATGAG+GGG | - | chr3_2:71002236-71002255 | None:intergenic | 25.0% |
| ! | CATATGATTAGACATAATGA+GGG | - | chr3_2:71002237-71002256 | None:intergenic | 25.0% |
| ! | ACATATGATTAGACATAATG+AGG | - | chr3_2:71002238-71002257 | None:intergenic | 25.0% |
| ! | TATTACCAAATCATGATACA+TGG | - | chr3_2:71002932-71002951 | None:intergenic | 25.0% |
| ! | TTCTGAAAGCAAAAAGCAAA+AGG | - | chr3_2:70998310-70998329 | None:intergenic | 30.0% |
| GTCAATTGAGAATTTGGAAA+CGG | - | chr3_2:70998705-70998724 | None:intergenic | 30.0% | |
| TGAGTAGTCAATTGAGAATT+TGG | - | chr3_2:70998711-70998730 | None:intergenic | 30.0% | |
| TTCTCAATTGACTACTCAAA+TGG | + | chr3_2:70998713-70998732 | Msa0421960:CDS | 30.0% | |
| GATTCTTATAAAGAAGATGC+TGG | + | chr3_2:70998881-70998900 | Msa0421960:CDS | 30.0% | |
| ! | AAACCTTAAAAGCGTATTTG+GGG | - | chr3_2:70998910-70998929 | None:intergenic | 30.0% |
| ! | GAAAACCTTAAAAGCGTATT+TGG | - | chr3_2:70998912-70998931 | None:intergenic | 30.0% |
| TTTAAATGAAGAAGACAGAG+AGG | - | chr3_2:70998937-70998956 | None:intergenic | 30.0% | |
| ! | TATTTGGAATTATAGGGTCA+TGG | + | chr3_2:70998960-70998979 | Msa0421960:intron | 30.0% |
| AATTATAGGGTCATGGATAT+AGG | + | chr3_2:70998967-70998986 | Msa0421960:intron | 30.0% | |
| ATTATAGGGTCATGGATATA+GGG | + | chr3_2:70998968-70998987 | Msa0421960:intron | 30.0% | |
| GTCTAAGTTACTGTTTGAAT+CGG | - | chr3_2:70999097-70999116 | None:intergenic | 30.0% | |
| GCTTATAAGTTAACTTACAG+CGG | + | chr3_2:70999142-70999161 | Msa0421960:intron | 30.0% | |
| ATAAGCTTGTGAGAAAATGA+CGG | + | chr3_2:70999399-70999418 | Msa0421960:intron | 30.0% | |
| ATCAGCTCATATGACTAAAA+AGG | - | chr3_2:70999438-70999457 | None:intergenic | 30.0% | |
| ATGAGAAAACATGAAAGCTA+CGG | - | chr3_2:70999505-70999524 | None:intergenic | 30.0% | |
| TTTATGTTGCTAGATCATGT+GGG | + | chr3_2:70999696-70999715 | Msa0421960:intron | 30.0% | |
| !! | TTAAAACCTTGAACTTGTTG+TGG | - | chr3_2:70999778-70999797 | None:intergenic | 30.0% |
| ! | ACAACAAGTTCAAGGTTTTA+AGG | + | chr3_2:70999777-70999796 | Msa0421960:CDS | 30.0% |
| ! | AAAATTTACCTTAAGGCGTT+GGG | - | chr3_2:70999809-70999828 | None:intergenic | 30.0% |
| AAAAATTTACCTTAAGGCGT+TGG | - | chr3_2:70999810-70999829 | None:intergenic | 30.0% | |
| TATGTTTGGATTGATTGGAA+GGG | + | chr3_2:70999840-70999859 | Msa0421960:intron | 30.0% | |
| ! | TATAGTGTTTAAAACAGGGT+TGG | + | chr3_2:70999893-70999912 | Msa0421960:intron | 30.0% |
| CTGTTTGGATATCTAATGAT+AGG | - | chr3_2:71000082-71000101 | None:intergenic | 30.0% | |
| AAGGAAATGGATGTTCATAT+GGG | + | chr3_2:71000159-71000178 | Msa0421960:intron | 30.0% | |
| AACATCTAAATTGCAAGGTA+AGG | - | chr3_2:71000312-71000331 | None:intergenic | 30.0% | |
| TTTCAAAACAAACTGGTGAT+AGG | + | chr3_2:71000553-71000572 | Msa0421960:intron | 30.0% | |
| ATATATATATAGACGTGCGT+CGG | + | chr3_2:71000590-71000609 | Msa0421960:intron | 30.0% | |
| !!! | TATGGGTTTTGTTTCATGTT+TGG | + | chr3_2:71000721-71000740 | Msa0421960:intron | 30.0% |
| AAAAAATGAAACTGAACAGC+TGG | - | chr3_2:71000836-71000855 | None:intergenic | 30.0% | |
| ! | AAAAAGGTGTAGGTAACATT+TGG | - | chr3_2:71000866-71000885 | None:intergenic | 30.0% |
| !! | TTACCTACACCTTTTTCATT+TGG | + | chr3_2:71000870-71000889 | Msa0421960:intron | 30.0% |
| !! | AGTTTTGGTCCAAATGAAAA+AGG | - | chr3_2:71000882-71000901 | None:intergenic | 30.0% |
| !! | TCAAAAACAGCTTAAGTTGA+TGG | + | chr3_2:71000914-71000933 | Msa0421960:intron | 30.0% |
| TAATGATGTGGAAATGAAAG+GGG | - | chr3_2:71001017-71001036 | None:intergenic | 30.0% | |
| CATAATGATGTGGAAATGAA+AGG | - | chr3_2:71001019-71001038 | None:intergenic | 30.0% | |
| TGATTGATTGCATAATGATG+TGG | - | chr3_2:71001029-71001048 | None:intergenic | 30.0% | |
| ! | TGTAAATCCCCATTTTGTAA+CGG | + | chr3_2:71001126-71001145 | Msa0421960:intron | 30.0% |
| ! | TGACATTTGATGATAGAAAG+AGG | + | chr3_2:71001416-71001435 | Msa0421960:intron | 30.0% |
| ! | ATTTGATGATAGAAAGAGGT+AGG | + | chr3_2:71001420-71001439 | Msa0421960:intron | 30.0% |
| GAAACGAGAGAAATATGATA+TGG | + | chr3_2:71001510-71001529 | Msa0421960:intron | 30.0% | |
| ATGATATGGGCCAAATTAAA+AGG | + | chr3_2:71001524-71001543 | Msa0421960:intron | 30.0% | |
| CATATATTATTCCCATTCGT+AGG | - | chr3_2:71001634-71001653 | None:intergenic | 30.0% | |
| GAATATATACAACTCTTCAC+TGG | + | chr3_2:71001732-71001751 | Msa0421960:intron | 30.0% | |
| TGAGTAAAAATGTGTCATCA+AGG | - | chr3_2:71001891-71001910 | None:intergenic | 30.0% | |
| AACCCAAAGCAATGTTAAAA+TGG | + | chr3_2:71001968-71001987 | Msa0421960:CDS | 30.0% | |
| TTAGCATAAAAAACCAGTAC+CGG | - | chr3_2:71002032-71002051 | None:intergenic | 30.0% | |
| TATCTGCTTGAAAATGTCTT+TGG | - | chr3_2:71002090-71002109 | None:intergenic | 30.0% | |
| !! | AGCAACGTATTTTAAGAGTA+TGG | + | chr3_2:71002155-71002174 | Msa0421960:intron | 30.0% |
| TAATCATATGTCGTGATTGA+AGG | + | chr3_2:71002247-71002266 | Msa0421960:intron | 30.0% | |
| ! | AAAATGTCTTTTCAGCTGAA+AGG | + | chr3_2:71002426-71002445 | Msa0421960:intron | 30.0% |
| AAGGCTAATAGCAATGAATT+TGG | + | chr3_2:71002504-71002523 | Msa0421960:CDS | 30.0% | |
| TAAACCTCATATTGCCATAT+TGG | - | chr3_2:71002605-71002624 | None:intergenic | 30.0% | |
| GAAGAACTCAATGTTAATGA+TGG | + | chr3_2:71002706-71002725 | Msa0421960:intron | 30.0% | |
| ! | CATTAAATGTCCATTTTCTG+AGG | - | chr3_2:71002847-71002866 | None:intergenic | 30.0% |
| ! | TCTTACTTCGTATTTTCCTT+TGG | + | chr3_2:71002894-71002913 | Msa0421960:three_prime_UTR | 30.0% |
| ATGGACAAATTACAAACCAA+AGG | - | chr3_2:71002913-71002932 | None:intergenic | 30.0% | |
| TTTGTCCATGTATCATGATT+TGG | + | chr3_2:71002924-71002943 | Msa0421960:three_prime_UTR | 30.0% | |
| GAATGTAGGAAGATTCAAAT+AGG | - | chr3_2:71003035-71003054 | None:intergenic | 30.0% | |
| AATCTTCCTACATTCTTGAA+GGG | + | chr3_2:71003040-71003059 | Msa0421960:three_prime_UTR | 30.0% | |
| !! | AGGATTTTGGAAAAAAGTGA+TGG | + | chr3_2:71003099-71003118 | Msa0421960:three_prime_UTR | 30.0% |
| TTTCAACTATCACCTTCTAC+TGG | + | chr3_2:70998639-70998658 | Msa0421960:CDS | 35.0% | |
| !!! | TATCACCTTCTACTGGTTTT+GGG | + | chr3_2:70998646-70998665 | Msa0421960:CDS | 35.0% |
| AGAATCAAGAATCGCCTAAT+TGG | - | chr3_2:70998867-70998886 | None:intergenic | 35.0% | |
| ! | AAACCCCAAATACGCTTTTA+AGG | + | chr3_2:70998904-70998923 | Msa0421960:CDS | 35.0% |
| AGAAAATGACGGTTACCAAA+CGG | + | chr3_2:70999410-70999429 | Msa0421960:intron | 35.0% | |
| ATGACTAAAAAGGATCCGTT+TGG | - | chr3_2:70999428-70999447 | None:intergenic | 35.0% | |
| ! | GCTTTCATGTTTTCTCATGT+TGG | + | chr3_2:70999507-70999526 | Msa0421960:intron | 35.0% |
| ! | TTTTTCTTATGTCATGCCAC+TGG | + | chr3_2:70999656-70999675 | Msa0421960:intron | 35.0% |
| GTTTATGTTGCTAGATCATG+TGG | + | chr3_2:70999695-70999714 | Msa0421960:intron | 35.0% | |
| ! | TTTTTCTGCTCCACTATGTT+TGG | + | chr3_2:70999826-70999845 | Msa0421960:intron | 35.0% |
| TCCACTATGTTTGGATTGAT+TGG | + | chr3_2:70999835-70999854 | Msa0421960:intron | 35.0% | |
| TCCAATCAATCCAAACATAG+TGG | - | chr3_2:70999839-70999858 | None:intergenic | 35.0% | |
| CTATGTTTGGATTGATTGGA+AGG | + | chr3_2:70999839-70999858 | Msa0421960:intron | 35.0% | |
| ATGTTTGGATTGATTGGAAG+GGG | + | chr3_2:70999841-70999860 | Msa0421960:intron | 35.0% | |
| TCTTTACCAATTTGTGGCTA+TGG | + | chr3_2:70999944-70999963 | Msa0421960:intron | 35.0% | |
| ! | TACGATGCCTATTTTCTGTT+TGG | - | chr3_2:71000097-71000116 | None:intergenic | 35.0% |
| GAAGGAAATGGATGTTCATA+TGG | + | chr3_2:71000158-71000177 | Msa0421960:intron | 35.0% | |
| AGGAAATGGATGTTCATATG+GGG | + | chr3_2:71000160-71000179 | Msa0421960:intron | 35.0% | |
| TTAGTAAAATAGGGGAAACC+TGG | + | chr3_2:71000217-71000236 | Msa0421960:intron | 35.0% | |
| CTCTGCTTTAGTATAAACCA+TGG | - | chr3_2:71000469-71000488 | None:intergenic | 35.0% | |
| ! | TTGCTGATGTCAAGATTTTG+TGG | + | chr3_2:71000496-71000515 | Msa0421960:intron | 35.0% |
| ! | TGAAAAGGGAGAATGAGTTT+TGG | - | chr3_2:71000897-71000916 | None:intergenic | 35.0% |
| AATGATGTGGAAATGAAAGG+GGG | - | chr3_2:71001016-71001035 | None:intergenic | 35.0% | |
| ! | AACAGCTACTCTGTGTTATT+AGG | - | chr3_2:71001091-71001110 | None:intergenic | 35.0% |
| AATGCATCCGTTACAAAATG+GGG | - | chr3_2:71001136-71001155 | None:intergenic | 35.0% | |
| CAATGCATCCGTTACAAAAT+GGG | - | chr3_2:71001137-71001156 | None:intergenic | 35.0% | |
| TTCTACTCTAGTCTCTGTTA+TGG | + | chr3_2:71001225-71001244 | Msa0421960:intron | 35.0% | |
| GACTAACATACCAATCTTTG+CGG | - | chr3_2:71001326-71001345 | None:intergenic | 35.0% | |
| !! | TTTCTCAACTTTTGTTGTGG+CGG | - | chr3_2:71001379-71001398 | None:intergenic | 35.0% |
| AGTCATGTTCCTAAAAGCTT+TGG | - | chr3_2:71001679-71001698 | None:intergenic | 35.0% | |
| ! | TTTTTGCACCAAATACTGAC+TGG | - | chr3_2:71001815-71001834 | None:intergenic | 35.0% |
| TCCCAAGAAAAATGTTGAAC+CGG | + | chr3_2:71002010-71002029 | Msa0421960:intron | 35.0% | |
| !! | ACCGGTTCAACATTTTTCTT+GGG | - | chr3_2:71002014-71002033 | None:intergenic | 35.0% |
| !!! | TACCGGTTCAACATTTTTCT+TGG | - | chr3_2:71002015-71002034 | None:intergenic | 35.0% |
| CATCAGAGAATCGAAAAGAT+AGG | - | chr3_2:71002055-71002074 | None:intergenic | 35.0% | |
| ! | CTATCTTTTCGATTCTCTGA+TGG | + | chr3_2:71002053-71002072 | Msa0421960:intron | 35.0% |
| TGTTTCAGTCTTTGAATCCA+AGG | - | chr3_2:71002118-71002137 | None:intergenic | 35.0% | |
| ATTGAAGGTGATGAGAATAG+TGG | + | chr3_2:71002262-71002281 | Msa0421960:intron | 35.0% | |
| TGCCGTATTCCATTAACAAA+AGG | + | chr3_2:71002305-71002324 | Msa0421960:CDS | 35.0% | |
| GCCGTATTCCATTAACAAAA+GGG | + | chr3_2:71002306-71002325 | Msa0421960:CDS | 35.0% | |
| ! | CCCCTTTTGTTAATGGAATA+CGG | - | chr3_2:71002310-71002329 | None:intergenic | 35.0% |
| CCGTATTCCATTAACAAAAG+GGG | + | chr3_2:71002307-71002326 | Msa0421960:CDS | 35.0% | |
| TTCTACCTGTCTAGTTATTG+TGG | - | chr3_2:71002357-71002376 | None:intergenic | 35.0% | |
| ! | AGAAGGGTACAAAATCTACT+CGG | + | chr3_2:71002468-71002487 | Msa0421960:CDS | 35.0% |
| ! | CAGACTTTGATCGTGAATTT+TGG | - | chr3_2:71002556-71002575 | None:intergenic | 35.0% |
| CAAAATTCACGATCAAAGTC+TGG | + | chr3_2:71002554-71002573 | Msa0421960:CDS | 35.0% | |
| GAGGTAAGATTCTACCAATA+TGG | + | chr3_2:71002588-71002607 | Msa0421960:intron | 35.0% | |
| TCTACCAATATGGCAATATG+AGG | + | chr3_2:71002598-71002617 | Msa0421960:intron | 35.0% | |
| ! | ATAGTGAGCACAGTAGTTTT+AGG | + | chr3_2:71002951-71002970 | Msa0421960:three_prime_UTR | 35.0% |
| !! | TAGTGAGCACAGTAGTTTTA+GGG | + | chr3_2:71002952-71002971 | Msa0421960:three_prime_UTR | 35.0% |
| GAATCTTCCTACATTCTTGA+AGG | + | chr3_2:71003039-71003058 | Msa0421960:three_prime_UTR | 35.0% | |
| ! | GTTAGCAAGGGTATATTTGT+CGG | + | chr3_2:71003076-71003095 | Msa0421960:three_prime_UTR | 35.0% |
| ! | GTATATTTGTCGGAGGATTT+TGG | + | chr3_2:71003086-71003105 | Msa0421960:three_prime_UTR | 35.0% |
| GCGCTTAAATTTAGCAGTCT+AGG | - | chr3_2:70998286-70998305 | None:intergenic | 40.0% | |
| CAATCTTCATCTTCCCTCTT+CGG | + | chr3_2:70998405-70998424 | Msa0421960:CDS | 40.0% | |
| AATCTTCATCTTCCCTCTTC+GGG | + | chr3_2:70998406-70998425 | Msa0421960:CDS | 40.0% | |
| !! | TGTAGAAGAAGCACCAAAAG+CGG | - | chr3_2:70998526-70998545 | None:intergenic | 40.0% |
| !!! | CTATCACCTTCTACTGGTTT+TGG | + | chr3_2:70998645-70998664 | Msa0421960:CDS | 40.0% |
| TGAAACCCAAAACCAGTAGA+AGG | - | chr3_2:70998654-70998673 | None:intergenic | 40.0% | |
| ATGAAAGCTACGGTTCTGTT+TGG | - | chr3_2:70999495-70999514 | None:intergenic | 40.0% | |
| TGTAACAGACCCACAGTTTA+GGG | + | chr3_2:70999564-70999583 | Msa0421960:CDS | 40.0% | |
| TACCAACTAGAATGCTCAGT+GGG | - | chr3_2:70999631-70999650 | None:intergenic | 40.0% | |
| !! | TCATGCCACTGGCTAATTTT+GGG | + | chr3_2:70999667-70999686 | Msa0421960:intron | 40.0% |
| TATTCCCCAAAATTAGCCAG+TGG | - | chr3_2:70999675-70999694 | None:intergenic | 40.0% | |
| GTGCATAGAAAGGACTCAAT+TGG | + | chr3_2:70999863-70999882 | Msa0421960:intron | 40.0% | |
| AATGGATGTTCATATGGGGT+TGG | + | chr3_2:71000164-71000183 | Msa0421960:intron | 40.0% | |
| ATGGATGTTCATATGGGGTT+GGG | + | chr3_2:71000165-71000184 | Msa0421960:intron | 40.0% | |
| AACTGAGCTTCCATGATAGT+TGG | + | chr3_2:71000243-71000262 | Msa0421960:intron | 40.0% | |
| TTCCATGATAGTTGGATCCA+AGG | + | chr3_2:71000251-71000270 | Msa0421960:intron | 40.0% | |
| TTCCTTGGATCCAACTATCA+TGG | - | chr3_2:71000256-71000275 | None:intergenic | 40.0% | |
| ! | GAATGGATTTGAGTCTTCCT+TGG | - | chr3_2:71000271-71000290 | None:intergenic | 40.0% |
| GGTGATAGGAAGTGATATGA+AGG | + | chr3_2:71000567-71000586 | Msa0421960:intron | 40.0% | |
| TAGGACAGACGTTGAGAAAA+AGG | + | chr3_2:71000767-71000786 | Msa0421960:intron | 40.0% | |
| ! | GGTCCAAATGAAAAAGGTGT+AGG | - | chr3_2:71000876-71000895 | None:intergenic | 40.0% |
| CCAATGCATCCGTTACAAAA+TGG | - | chr3_2:71001138-71001157 | None:intergenic | 40.0% | |
| !!! | CCATTTTGTAACGGATGCAT+TGG | + | chr3_2:71001135-71001154 | Msa0421960:intron | 40.0% |
| !! | TGTAACGGATGCATTGGAAA+AGG | + | chr3_2:71001141-71001160 | Msa0421960:intron | 40.0% |
| ATGATAGAAAGAGGTAGGAG+TGG | + | chr3_2:71001425-71001444 | Msa0421960:intron | 40.0% | |
| ATGGGCCAAATTAAAAGGCA+TGG | + | chr3_2:71001529-71001548 | Msa0421960:intron | 40.0% | |
| ! | ATAGCATGTGTTTGGGATCA+TGG | + | chr3_2:71001560-71001579 | Msa0421960:intron | 40.0% |
| AGAAGGACAATGCACAAACT+TGG | - | chr3_2:71001609-71001628 | None:intergenic | 40.0% | |
| TTGTCCTTCTAACCTACGAA+TGG | + | chr3_2:71001619-71001638 | Msa0421960:intron | 40.0% | |
| TGTCCTTCTAACCTACGAAT+GGG | + | chr3_2:71001620-71001639 | Msa0421960:intron | 40.0% | |
| ATTCCCATTCGTAGGTTAGA+AGG | - | chr3_2:71001626-71001645 | None:intergenic | 40.0% | |
| ! | TAAGGAGAGCCAAAGCTTTT+AGG | + | chr3_2:71001667-71001686 | Msa0421960:intron | 40.0% |
| ATATACAACTCTTCACTGGG+TGG | + | chr3_2:71001736-71001755 | Msa0421960:intron | 40.0% | |
| TGTATCCACCAGTCAGTATT+TGG | + | chr3_2:71001804-71001823 | Msa0421960:intron | 40.0% | |
| CAGAGACAATGACTTCATCT+TGG | - | chr3_2:71001929-71001948 | None:intergenic | 40.0% | |
| ! | AACATTTTTCTTGGGAGAGC+AGG | - | chr3_2:71002006-71002025 | None:intergenic | 40.0% |
| GAAAAATGTTGAACCGGTAC+TGG | + | chr3_2:71002016-71002035 | Msa0421960:intron | 40.0% | |
| TTCAAGCAGATACTCTTCCT+TGG | + | chr3_2:71002098-71002117 | Msa0421960:CDS | 40.0% | |
| ! | TCAGCTTCCCCTTTTGTTAA+TGG | - | chr3_2:71002317-71002336 | None:intergenic | 40.0% |
| ACTAGCCACAATAACTAGAC+AGG | + | chr3_2:71002349-71002368 | Msa0421960:CDS | 40.0% | |
| ! | TCTTTTCAGCTGAAAGGATC+TGG | + | chr3_2:71002432-71002451 | Msa0421960:intron | 40.0% |
| TGGAGCGGAATTATCTAGAA+GGG | + | chr3_2:71002452-71002471 | Msa0421960:CDS | 40.0% | |
| ATGGTCTACTTTGTGAGAAC+AGG | + | chr3_2:71002725-71002744 | Msa0421960:intron | 40.0% | |
| ACGGGATATGGAGATTATGA+TGG | + | chr3_2:71002806-71002825 | Msa0421960:CDS | 40.0% | |
| TATGGAGATTATGATGGCTG+AGG | + | chr3_2:71002812-71002831 | Msa0421960:CDS | 40.0% | |
| ATTATGATGGCTGAGGACAT+GGG | + | chr3_2:71002819-71002838 | Msa0421960:CDS | 40.0% | |
| TTCAGCATACATGGTTAGCA+AGG | + | chr3_2:71003063-71003082 | Msa0421960:three_prime_UTR | 40.0% | |
| TCAGCATACATGGTTAGCAA+GGG | + | chr3_2:71003064-71003083 | Msa0421960:three_prime_UTR | 40.0% | |
| GAAAAAAGTGATGGCATGTG+AGG | + | chr3_2:71003108-71003127 | Msa0421960:three_prime_UTR | 40.0% | |
| !! | GAAGAAGGAGTACCGAAAGT+TGG | - | chr3_2:70998456-70998475 | None:intergenic | 45.0% |
| ! | CTGAAAGCTGGTGTTGAAGA+AGG | - | chr3_2:70998471-70998490 | None:intergenic | 45.0% |
| AAAAGCGGGAGTTGAAGAAG+GGG | - | chr3_2:70998511-70998530 | None:intergenic | 45.0% | |
| CAAAAGCGGGAGTTGAAGAA+GGG | - | chr3_2:70998512-70998531 | None:intergenic | 45.0% | |
| !! | GTAGAAGAAGCACCAAAAGC+GGG | - | chr3_2:70998525-70998544 | None:intergenic | 45.0% |
| ! | AGAGAACGGTGTTGAGAAGA+GGG | - | chr3_2:70998571-70998590 | None:intergenic | 45.0% |
| ! | GGTTGTTGTTGAGCAGAGAA+CGG | - | chr3_2:70998585-70998604 | None:intergenic | 45.0% |
| TTGTTGCTGCTGCTGTTGTT+GGG | - | chr3_2:70998607-70998626 | None:intergenic | 45.0% | |
| TGGGTTTCAGAATTCTACGC+CGG | + | chr3_2:70998665-70998684 | Msa0421960:CDS | 45.0% | |
| TGAGAATTTGGAAACGGCGA+AGG | - | chr3_2:70998699-70998718 | None:intergenic | 45.0% | |
| TCCAGTTCCATTCTCACTAG+CGG | + | chr3_2:70998746-70998765 | Msa0421960:CDS | 45.0% | |
| GTGTAACAGACCCACAGTTT+AGG | + | chr3_2:70999563-70999582 | Msa0421960:CDS | 45.0% | |
| ! | CTTACATCTGAAACACCAGC+AGG | - | chr3_2:70999595-70999614 | None:intergenic | 45.0% |
| TTCCCACTGAGCATTCTAGT+TGG | + | chr3_2:70999626-70999645 | Msa0421960:intron | 45.0% | |
| CTACCAACTAGAATGCTCAG+TGG | - | chr3_2:70999632-70999651 | None:intergenic | 45.0% | |
| !! | GTCATGCCACTGGCTAATTT+TGG | + | chr3_2:70999666-70999685 | Msa0421960:intron | 45.0% |
| !! | CATGCCACTGGCTAATTTTG+GGG | + | chr3_2:70999668-70999687 | Msa0421960:intron | 45.0% |
| ATGTTGCTAGATCATGTGGG+CGG | + | chr3_2:70999699-70999718 | Msa0421960:intron | 45.0% | |
| ! | GTGCTGATAGAGAACGTCTT+TGG | + | chr3_2:70999752-70999771 | Msa0421960:CDS | 45.0% |
| CTTTGGCCACAACAAGTTCA+AGG | + | chr3_2:70999769-70999788 | Msa0421960:CDS | 45.0% | |
| ! | ATTGGAAGGGGTGCATAGAA+AGG | + | chr3_2:70999853-70999872 | Msa0421960:intron | 45.0% |
| GTAGCTCCATAGCCACAAAT+TGG | - | chr3_2:70999953-70999972 | None:intergenic | 45.0% | |
| AATTCCGATGTTTGGGAGCA+CGG | - | chr3_2:70999991-71000010 | None:intergenic | 45.0% | |
| ! | TCATATGGGGTTGGGCATTT+TGG | + | chr3_2:71000173-71000192 | Msa0421960:intron | 45.0% |
| CAAATGTCTGGCATCATTGC+AGG | - | chr3_2:71000389-71000408 | None:intergenic | 45.0% | |
| TTCTGCTCATCAGATGTCCA+TGG | + | chr3_2:71000449-71000468 | Msa0421960:intron | 45.0% | |
| ACGGATGCATTGGAAAAGGA+AGG | + | chr3_2:71001145-71001164 | Msa0421960:intron | 45.0% | |
| TCAAACAATCCCCTCCACAA+AGG | - | chr3_2:71001284-71001303 | None:intergenic | 45.0% | |
| TGTGGAGGGGATTGTTTGAT+TGG | + | chr3_2:71001285-71001304 | Msa0421960:intron | 45.0% | |
| AACTTGGATGTGCGTTAGGT+GGG | - | chr3_2:71001593-71001612 | None:intergenic | 45.0% | |
| AAACTTGGATGTGCGTTAGG+TGG | - | chr3_2:71001594-71001613 | None:intergenic | 45.0% | |
| CACAAACTTGGATGTGCGTT+AGG | - | chr3_2:71001597-71001616 | None:intergenic | 45.0% | |
| ! | GCAGCAGTCTTTTGCCATTA+TGG | - | chr3_2:71001777-71001796 | None:intergenic | 45.0% |
| ! | TTGCACCAAATACTGACTGG+TGG | - | chr3_2:71001812-71001831 | None:intergenic | 45.0% |
| GAAGGTGATGAGAATAGTGG+AGG | + | chr3_2:71002265-71002284 | Msa0421960:intron | 45.0% | |
| CTACTTCCTGTTCTGTTGCT+TGG | + | chr3_2:71002389-71002408 | Msa0421960:intron | 45.0% | |
| ! | TTCCTGTTCTGTTGCTTGGA+TGG | + | chr3_2:71002393-71002412 | Msa0421960:intron | 45.0% |
| TTCCATCCAAGCAACAGAAC+AGG | - | chr3_2:71002398-71002417 | None:intergenic | 45.0% | |
| CTGGAGCGGAATTATCTAGA+AGG | + | chr3_2:71002451-71002470 | Msa0421960:CDS | 45.0% | |
| TGGTAACTCAGCTCATCTTC+TGG | + | chr3_2:71002524-71002543 | Msa0421960:CDS | 45.0% | |
| GGTAACTCAGCTCATCTTCT+GGG | + | chr3_2:71002525-71002544 | Msa0421960:CDS | 45.0% | |
| ATGGATGCCATAGCAAGACT+TGG | + | chr3_2:71002762-71002781 | Msa0421960:CDS | 45.0% | |
| AACACTGCCAAGTCTTGCTA+TGG | - | chr3_2:71002772-71002791 | None:intergenic | 45.0% | |
| GATTATGATGGCTGAGGACA+TGG | + | chr3_2:71002818-71002837 | Msa0421960:CDS | 45.0% | |
| GACATGGGAACCTCAGAAAA+TGG | + | chr3_2:71002834-71002853 | Msa0421960:CDS | 45.0% | |
| ! | AGGGACACTTTTCGTGTAGT+CGG | + | chr3_2:71002971-71002990 | Msa0421960:three_prime_UTR | 45.0% |
| TGACCCATTTGCGATGTTTG+TGG | + | chr3_2:71003009-71003028 | Msa0421960:three_prime_UTR | 45.0% | |
| AGGCCACAAACATCGCAAAT+GGG | - | chr3_2:71003015-71003034 | None:intergenic | 45.0% | |
| TAGGCCACAAACATCGCAAA+TGG | - | chr3_2:71003016-71003035 | None:intergenic | 45.0% | |
| GCTGAACCCTTCAAGAATGT+AGG | - | chr3_2:71003049-71003068 | None:intergenic | 45.0% | |
| CTTGAAGGGTTCAGCATACA+TGG | + | chr3_2:71003054-71003073 | Msa0421960:three_prime_UTR | 45.0% | |
| ! | AGCAAGGGTATATTTGTCGG+AGG | + | chr3_2:71003079-71003098 | Msa0421960:three_prime_UTR | 45.0% |
| !! | ATGTTAAATAATTATATAAA+TGG | + | chr3_2:71000327-71000346 | Msa0421960:intron | 5.0% |
| TGAAGATTGACCGCCGAACA+TGG | - | chr3_2:70998394-70998413 | None:intergenic | 50.0% | |
| ! | AGTGCCGAATGCTGAAGATG+GGG | - | chr3_2:70998433-70998452 | None:intergenic | 50.0% |
| !! | GAGTGCCGAATGCTGAAGAT+GGG | - | chr3_2:70998434-70998453 | None:intergenic | 50.0% |
| GCATTCGGCACTCCAACTTT+CGG | + | chr3_2:70998441-70998460 | Msa0421960:CDS | 50.0% | |
| CCAAAAGCGGGAGTTGAAGA+AGG | - | chr3_2:70998513-70998532 | None:intergenic | 50.0% | |
| ! | CCTTCTTCAACTCCCGCTTT+TGG | + | chr3_2:70998510-70998529 | Msa0421960:CDS | 50.0% |
| GCTTCTTCTACACCCGCTTT+CGG | + | chr3_2:70998534-70998553 | Msa0421960:CDS | 50.0% | |
| ! | CAGAGAACGGTGTTGAGAAG+AGG | - | chr3_2:70998572-70998591 | None:intergenic | 50.0% |
| TGTTGCTGCTGCTGTTGTTG+GGG | - | chr3_2:70998606-70998625 | None:intergenic | 50.0% | |
| GTTGTTGCTGCTGCTGTTGT+TGG | - | chr3_2:70998608-70998627 | None:intergenic | 50.0% | |
| TTTGGAAACGGCGAAGGTTG+CGG | - | chr3_2:70998693-70998712 | None:intergenic | 50.0% | |
| TCCGCTAGTGAGAATGGAAC+TGG | - | chr3_2:70998750-70998769 | None:intergenic | 50.0% | |
| TCACGATCCGCTAGTGAGAA+TGG | - | chr3_2:70998756-70998775 | None:intergenic | 50.0% | |
| CAGGCTTCACCCTAAACTGT+GGG | - | chr3_2:70999576-70999595 | None:intergenic | 50.0% | |
| ATCATGTGGGCGGAAGCTAT+GGG | + | chr3_2:70999709-70999728 | Msa0421960:CDS | 50.0% | |
| GAAGCTATGGGGAAGCTTGA+GGG | + | chr3_2:70999721-70999740 | Msa0421960:CDS | 50.0% | |
| TATGGGGAAGCTTGAGGGTA+TGG | + | chr3_2:70999726-70999745 | Msa0421960:CDS | 50.0% | |
| GGATCTTTCCCAACGCCTTA+AGG | + | chr3_2:70999798-70999817 | Msa0421960:CDS | 50.0% | |
| TCTTCCGTGCTCCCAAACAT+CGG | + | chr3_2:70999984-71000003 | Msa0421960:intron | 50.0% | |
| CATGGAAGCTCAGTTACACC+AGG | - | chr3_2:71000238-71000257 | None:intergenic | 50.0% | |
| TTAGCAGTTCCCGTGTGTCT+AGG | - | chr3_2:71000619-71000638 | None:intergenic | 50.0% | |
| ! | AAAGGGGGCATGGCATTAAC+AGG | - | chr3_2:71001001-71001020 | None:intergenic | 50.0% |
| TGTGGAAATGAAAGGGGGCA+TGG | - | chr3_2:71001011-71001030 | None:intergenic | 50.0% | |
| GATCGGCGTCTAATCCTTTG+TGG | + | chr3_2:71001267-71001286 | Msa0421960:intron | 50.0% | |
| GGCGTCTAATCCTTTGTGGA+GGG | + | chr3_2:71001271-71001290 | Msa0421960:intron | 50.0% | |
| GCGTCTAATCCTTTGTGGAG+GGG | + | chr3_2:71001272-71001291 | Msa0421960:intron | 50.0% | |
| GAGTTAGCAGCCGCAAAGAT+TGG | + | chr3_2:71001313-71001332 | Msa0421960:intron | 50.0% | |
| ! | GCATGTGTTTGGGATCATGG+TGG | + | chr3_2:71001563-71001582 | Msa0421960:intron | 50.0% |
| TTCTTGGGAGAGCAGGAGAA+AGG | - | chr3_2:71001999-71002018 | None:intergenic | 50.0% | |
| ! | GATGAGAATAGTGGAGGCGT+TGG | + | chr3_2:71002271-71002290 | Msa0421960:CDS | 50.0% |
| !! | AGAATAGTGGAGGCGTTGGA+GGG | + | chr3_2:71002275-71002294 | Msa0421960:CDS | 50.0% |
| TCAGCTGAAAGGATCTGGAG+CGG | + | chr3_2:71002437-71002456 | Msa0421960:intron | 50.0% | |
| GGTAGAATCTTACCTCCTGC+AGG | - | chr3_2:71002584-71002603 | None:intergenic | 50.0% | |
| ! | ACAGGTATTGCAGCAGCAGA+TGG | + | chr3_2:71002743-71002762 | Msa0421960:intron | 50.0% |
| ! | GACACTTTTCGTGTAGTCGG+CGG | + | chr3_2:71002974-71002993 | Msa0421960:three_prime_UTR | 50.0% |
| AGATTGACCGCCGAACATGG+TGG | - | chr3_2:70998391-70998410 | None:intergenic | 55.0% | |
| TGAAGATGGGGTCCCGAAGA+GGG | - | chr3_2:70998421-70998440 | None:intergenic | 55.0% | |
| GGGACCCCATCTTCAGCATT+CGG | + | chr3_2:70998426-70998445 | Msa0421960:CDS | 55.0% | |
| !! | GGAGTGCCGAATGCTGAAGA+TGG | - | chr3_2:70998435-70998454 | None:intergenic | 55.0% |
| !! | AAGAAGGGGTACCGAAGCCT+GGG | - | chr3_2:70998497-70998516 | None:intergenic | 55.0% |
| TCTTCTACACCCGCTTTCGG+TGG | + | chr3_2:70998537-70998556 | Msa0421960:CDS | 55.0% | |
| GAAGAACCACCACCGAAAGC+GGG | - | chr3_2:70998549-70998568 | None:intergenic | 55.0% | |
| GGAAGAACCACCACCGAAAG+CGG | - | chr3_2:70998550-70998569 | None:intergenic | 55.0% | |
| GCAGGCTTCACCCTAAACTG+TGG | - | chr3_2:70999577-70999596 | None:intergenic | 55.0% | |
| ! | CAGTTTAGGGTGAAGCCTGC+TGG | + | chr3_2:70999577-70999596 | Msa0421960:CDS | 55.0% |
| GATCATGTGGGCGGAAGCTA+TGG | + | chr3_2:70999708-70999727 | Msa0421960:intron | 55.0% | |
| TCATGTGGGCGGAAGCTATG+GGG | + | chr3_2:70999710-70999729 | Msa0421960:CDS | 55.0% | |
| GGAAGCTATGGGGAAGCTTG+AGG | + | chr3_2:70999720-70999739 | Msa0421960:CDS | 55.0% | |
| ! | GATGTTTGGGAGCACGGAAG+AGG | - | chr3_2:70999985-71000004 | None:intergenic | 55.0% |
| ! | GCGTCGGTAACCTAGACACA+CGG | + | chr3_2:71000606-71000625 | Msa0421960:intron | 55.0% |
| CGTCGGTAACCTAGACACAC+GGG | + | chr3_2:71000607-71000626 | Msa0421960:intron | 55.0% | |
| CGGCGTCTAATCCTTTGTGG+AGG | + | chr3_2:71001270-71001289 | Msa0421960:intron | 55.0% | |
| !! | GAGAATAGTGGAGGCGTTGG+AGG | + | chr3_2:71002274-71002293 | Msa0421960:CDS | 55.0% |
| ACTCGGCGTATCTCGTGTCA+AGG | + | chr3_2:71002485-71002504 | Msa0421960:CDS | 55.0% | |
| TCAAAGTCTGGCTGACCTGC+AGG | + | chr3_2:71002566-71002585 | Msa0421960:CDS | 55.0% | |
| !! | GTGTTCTGAAGCGAGACGCA+CGG | + | chr3_2:71002787-71002806 | Msa0421960:CDS | 55.0% |
| !! | TGTTCTGAAGCGAGACGCAC+GGG | + | chr3_2:71002788-71002807 | Msa0421960:CDS | 55.0% |
| ACGCCGCACACCACCATGTT+CGG | + | chr3_2:70998378-70998397 | Msa0421960:exon | 60.0% | |
| CTGAAGATGGGGTCCCGAAG+AGG | - | chr3_2:70998422-70998441 | None:intergenic | 60.0% | |
| ACACCAGCTTTCAGCACCCC+AGG | + | chr3_2:70998477-70998496 | Msa0421960:CDS | 60.0% | |
| !! | AAGCCTGGGGTGCTGAAAGC+TGG | - | chr3_2:70998483-70998502 | None:intergenic | 60.0% |
| GCTTTCAGCACCCCAGGCTT+CGG | + | chr3_2:70998483-70998502 | Msa0421960:CDS | 60.0% | |
| !! | AGAAGGGGTACCGAAGCCTG+GGG | - | chr3_2:70998496-70998515 | None:intergenic | 60.0% |
| !! | GAAGAAGGGGTACCGAAGCC+TGG | - | chr3_2:70998498-70998517 | None:intergenic | 60.0% |
| TCTACACCCGCTTTCGGTGG+TGG | + | chr3_2:70998540-70998559 | Msa0421960:CDS | 60.0% | |
| !! | GTGGAGGCGTTGGAGGGAAA+AGG | + | chr3_2:71002281-71002300 | Msa0421960:CDS | 60.0% |
| AAGTCTGGCTGACCTGCAGG+AGG | + | chr3_2:71002569-71002588 | Msa0421960:CDS | 60.0% | |
| GAAGCGAGACGCACGGGATA+TGG | + | chr3_2:71002794-71002813 | Msa0421960:CDS | 60.0% | |
| ! | CCGCCGAACATGGTGGTGTG+CGG | - | chr3_2:70998384-70998403 | None:intergenic | 65.0% |
| CCGCACACCACCATGTTCGG+CGG | + | chr3_2:70998381-70998400 | Msa0421960:exon | 65.0% | |
| AACGGCGAAGGTTGCGGCGC+CGG | - | chr3_2:70998687-70998706 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 70998255 | 71003171 | 70998255 | ID=Msa0421960;Name=Msa0421960 |
| chr3_2 | mRNA | 70998255 | 71003171 | 70998255 | ID=Msa0421960-mRNA-1;Parent=Msa0421960;Name=Msa0421960-mRNA-1;_AED=0.09;_eAED=0.09;_QI=138|1|1|1|1|1|9|302|380 |
| chr3_2 | exon | 70998255 | 70998782 | 70998255 | ID=Msa0421960-mRNA-1:exon:17236;Parent=Msa0421960-mRNA-1 |
| chr3_2 | exon | 70998872 | 70998925 | 70998872 | ID=Msa0421960-mRNA-1:exon:17237;Parent=Msa0421960-mRNA-1 |
| chr3_2 | exon | 70999550 | 70999609 | 70999550 | ID=Msa0421960-mRNA-1:exon:17238;Parent=Msa0421960-mRNA-1 |
| chr3_2 | exon | 70999709 | 70999819 | 70999709 | ID=Msa0421960-mRNA-1:exon:17239;Parent=Msa0421960-mRNA-1 |
| chr3_2 | exon | 71001924 | 71001989 | 71001924 | ID=Msa0421960-mRNA-1:exon:17240;Parent=Msa0421960-mRNA-1 |
| chr3_2 | exon | 71002085 | 71002171 | 71002085 | ID=Msa0421960-mRNA-1:exon:17241;Parent=Msa0421960-mRNA-1 |
| chr3_2 | exon | 71002269 | 71002370 | 71002269 | ID=Msa0421960-mRNA-1:exon:17242;Parent=Msa0421960-mRNA-1 |
| chr3_2 | exon | 71002441 | 71002590 | 71002441 | ID=Msa0421960-mRNA-1:exon:17243;Parent=Msa0421960-mRNA-1 |
| chr3_2 | exon | 71002747 | 71003171 | 71002747 | ID=Msa0421960-mRNA-1:exon:17244;Parent=Msa0421960-mRNA-1 |
| chr3_2 | five_prime_UTR | 70998255 | 70998392 | 70998255 | ID=Msa0421960-mRNA-1:five_prime_utr;Parent=Msa0421960-mRNA-1 |
| chr3_2 | CDS | 70998393 | 70998782 | 70998393 | ID=Msa0421960-mRNA-1:cds;Parent=Msa0421960-mRNA-1 |
| chr3_2 | CDS | 70998872 | 70998925 | 70998872 | ID=Msa0421960-mRNA-1:cds;Parent=Msa0421960-mRNA-1 |
| chr3_2 | CDS | 70999550 | 70999609 | 70999550 | ID=Msa0421960-mRNA-1:cds;Parent=Msa0421960-mRNA-1 |
| chr3_2 | CDS | 70999709 | 70999819 | 70999709 | ID=Msa0421960-mRNA-1:cds;Parent=Msa0421960-mRNA-1 |
| chr3_2 | CDS | 71001924 | 71001989 | 71001924 | ID=Msa0421960-mRNA-1:cds;Parent=Msa0421960-mRNA-1 |
| chr3_2 | CDS | 71002085 | 71002171 | 71002085 | ID=Msa0421960-mRNA-1:cds;Parent=Msa0421960-mRNA-1 |
| chr3_2 | CDS | 71002269 | 71002370 | 71002269 | ID=Msa0421960-mRNA-1:cds;Parent=Msa0421960-mRNA-1 |
| chr3_2 | CDS | 71002441 | 71002590 | 71002441 | ID=Msa0421960-mRNA-1:cds;Parent=Msa0421960-mRNA-1 |
| chr3_2 | CDS | 71002747 | 71002869 | 71002747 | ID=Msa0421960-mRNA-1:cds;Parent=Msa0421960-mRNA-1 |
| chr3_2 | three_prime_UTR | 71002870 | 71003171 | 71002870 | ID=Msa0421960-mRNA-1:three_prime_utr;Parent=Msa0421960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
