Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0514370 | AES72057.2 | 99.474 | 380 | 2 | 0 | 1 | 380 | 1 | 380 | 0.0 | 767 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0514370 | sp|Q8GYF7|NUP54_ARATH | 67.560 | 373 | 106 | 4 | 10 | 370 | 1 | 370 | 1.38e-163 | 466 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0514370 | G7JC14 | 99.474 | 380 | 2 | 0 | 1 | 380 | 1 | 380 | 0.0 | 767 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0223300 | Msa0514370 | 0.803351 | 3.633325e-49 | -8.615850e-47 |
Msa0373400 | Msa0514370 | 0.992752 | 3.236227e-195 | -8.615850e-47 |
Msa0421960 | Msa0514370 | 0.944356 | 2.266556e-103 | -8.615850e-47 |
Msa0514370 | Msa0829860 | 0.986773 | 6.374145e-168 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0514370 | MtrunA17_Chr3g0122701 | 99.474 | 380 | 2 | 0 | 1 | 380 | 1 | 380 | 0.0 | 767 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0514370 | AT1G24310.1 | 67.560 | 373 | 106 | 4 | 10 | 370 | 1 | 370 | 1.40e-164 | 466 |
Find 134 sgRNAs with CRISPR-Local
Find 357 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GAAAACCTTAAAAGCGTATT+TGG | 0.127759 | 3_4:-65043276 | None:intergenic |
TGAGTAGTCAATTGAGAATT+TGG | 0.173685 | 3_4:-65043075 | None:intergenic |
CTATCACCTTCTACTGGTTT+TGG | 0.175988 | 3_4:+65043012 | Msa0514370:CDS |
CAGACTTTGATCGTGAATTT+TGG | 0.193440 | 3_4:-65046954 | None:intergenic |
TGGTAACTCAGCTCATCTTC+TGG | 0.215937 | 3_4:+65046925 | Msa0514370:CDS |
GTATATTTGTCGGAGGATTT+TGG | 0.218217 | 3_4:+65047487 | Msa0514370:three_prime_UTR |
TATCTGCTTGAAAATGTCTT+TGG | 0.301845 | 3_4:-65046488 | None:intergenic |
GAAGCGAGACGCACGGGATA+TGG | 0.316915 | 3_4:+65047195 | Msa0514370:CDS |
AAAACCTTAAAAGCGTATTT+GGG | 0.319798 | 3_4:-65043275 | None:intergenic |
CAATCTTCATCTTCCCTCTT+CGG | 0.322179 | 3_4:+65042772 | Msa0514370:CDS |
TTTGTCCATGTATCATGATT+TGG | 0.323361 | 3_4:+65047325 | Msa0514370:three_prime_UTR |
AACCCAAAGCAATGTTAAAA+TGG | 0.323703 | 3_4:+65046369 | Msa0514370:CDS |
GTGTAACAGACCCACAGTTT+AGG | 0.324603 | 3_4:+65043929 | Msa0514370:CDS |
GTTGTTGCTGCTGCTGTTGT+TGG | 0.325620 | 3_4:-65042972 | None:intergenic |
GACATGGGAACCTCAGAAAA+TGG | 0.331518 | 3_4:+65047235 | Msa0514370:CDS |
TTGTTGCTGCTGCTGTTGTT+GGG | 0.347224 | 3_4:-65042971 | None:intergenic |
GGTAACTCAGCTCATCTTCT+GGG | 0.368462 | 3_4:+65046926 | Msa0514370:CDS |
CCTTCTTCAACTCCCGCTTT+TGG | 0.369276 | 3_4:+65042877 | Msa0514370:CDS |
GGATCTTTCCCAACGCCTTA+AGG | 0.376166 | 3_4:+65044164 | Msa0514370:CDS |
TGTAACAGACCCACAGTTTA+GGG | 0.381508 | 3_4:+65043930 | Msa0514370:CDS |
GCTTCTTCTACACCCGCTTT+CGG | 0.390655 | 3_4:+65042901 | Msa0514370:CDS |
GAATGTAGGAAGATTCAAAT+AGG | 0.392916 | 3_4:-65047433 | None:intergenic |
AATCTTCATCTTCCCTCTTC+GGG | 0.396928 | 3_4:+65042773 | Msa0514370:CDS |
CTTGAAGGGTTCAGCATACA+TGG | 0.400271 | 3_4:+65047455 | Msa0514370:three_prime_UTR |
AAGGCTAATAGCAATGGATT+TGG | 0.408263 | 3_4:+65046905 | Msa0514370:CDS |
GATCATGTGGGCGGAAGCTA+TGG | 0.409669 | 3_4:+65044074 | Msa0514370:intron |
CTGGAGCGGAATTATCTAGA+AGG | 0.413522 | 3_4:+65046852 | Msa0514370:CDS |
GTGCTGATAGAGAACGTCTT+TGG | 0.413609 | 3_4:+65044118 | Msa0514370:CDS |
AAAATTTACCTTAAGGCGTT+GGG | 0.422159 | 3_4:-65044172 | None:intergenic |
AACGGCGAAGGTTGCGGCGC+CGG | 0.423275 | 3_4:-65043051 | None:intergenic |
GCATTCGGCACTCCAACTTT+CGG | 0.423472 | 3_4:+65042808 | Msa0514370:CDS |
GAAGAAGGGGTACCGAAGCC+TGG | 0.427369 | 3_4:-65042862 | None:intergenic |
TAGGCCACAAACATCGCAAA+TGG | 0.427930 | 3_4:-65047414 | None:intergenic |
GAATCTTCCTACATTCTTGA+AGG | 0.428611 | 3_4:+65047440 | Msa0514370:three_prime_UTR |
TTCTCAATTGACTACTCAAA+TGG | 0.443096 | 3_4:+65043080 | Msa0514370:CDS |
TGCCGTATTCCATTAACAAA+AGG | 0.445652 | 3_4:+65046706 | Msa0514370:CDS |
GCTTTCAGCACCCCAGGCTT+CGG | 0.445658 | 3_4:+65042850 | Msa0514370:CDS |
TCTACACCCGCTTTCGGTGG+TGG | 0.448947 | 3_4:+65042907 | Msa0514370:CDS |
GGGACCCCATCTTCAGCATT+CGG | 0.452689 | 3_4:+65042793 | Msa0514370:CDS |
TGAAACCCAAAACCAGTAGA+AGG | 0.453433 | 3_4:-65043018 | None:intergenic |
GAGAATAGTGGAGGCGTTGG+AGG | 0.455797 | 3_4:+65046675 | Msa0514370:CDS |
TGACCCATTTGCGATGTTTG+TGG | 0.457218 | 3_4:+65047410 | Msa0514370:three_prime_UTR |
TTCAAGCAGATACTCTTCCT+TGG | 0.459845 | 3_4:+65046499 | Msa0514370:CDS |
CTTTGGCCACAACAAGTTCA+AGG | 0.461110 | 3_4:+65044135 | Msa0514370:CDS |
ACGCCGCACACCACCATGTT+CGG | 0.462481 | 3_4:+65042745 | Msa0514370:exon |
AAGCCTGGGGTGCTGAAAGC+TGG | 0.465129 | 3_4:-65042847 | None:intergenic |
CAAAATTCACGATCAAAGTC+TGG | 0.467189 | 3_4:+65046955 | Msa0514370:CDS |
TCCGCTAGTGAGAATGGAAC+TGG | 0.468365 | 3_4:-65043114 | None:intergenic |
TATGGGGAAGCTTGAGGGTA+TGG | 0.469058 | 3_4:+65044092 | Msa0514370:CDS |
CAGTTTAGGGTGAAGCCTGC+TGG | 0.475949 | 3_4:+65043943 | Msa0514370:CDS |
TTTGGAAACGGCGAAGGTTG+CGG | 0.476917 | 3_4:-65043057 | None:intergenic |
TCAAAGTCTGGCTGACCTGC+AGG | 0.480292 | 3_4:+65046967 | Msa0514370:CDS |
GTCAATTGAGAATTTGGAAA+CGG | 0.480882 | 3_4:-65043069 | None:intergenic |
GATGAGAATAGTGGAGGCGT+TGG | 0.481773 | 3_4:+65046672 | Msa0514370:CDS |
TCACGATCCGCTAGTGAGAA+TGG | 0.483587 | 3_4:-65043120 | None:intergenic |
GCCGTATTCCATTAACAAAA+GGG | 0.485365 | 3_4:+65046707 | Msa0514370:CDS |
TTTCAACTATCACCTTCTAC+TGG | 0.487130 | 3_4:+65043006 | Msa0514370:CDS |
GAAGCTATGGGGAAGCTTGA+GGG | 0.490154 | 3_4:+65044087 | Msa0514370:CDS |
CAGAGACAATGACTTCATCT+TGG | 0.494474 | 3_4:-65046327 | None:intergenic |
GTTAGCAAGGGTATATTTGT+CGG | 0.495850 | 3_4:+65047477 | Msa0514370:three_prime_UTR |
AAGAAGGGGTACCGAAGCCT+GGG | 0.499083 | 3_4:-65042861 | None:intergenic |
TTAAAACCTTGAACTTGTTG+TGG | 0.500336 | 3_4:-65044141 | None:intergenic |
GTGGAGGCGTTGGAGGGAAA+AGG | 0.503729 | 3_4:+65046682 | Msa0514370:CDS |
GCGCTTAAATTTAGCAGTCT+AGG | 0.504211 | 3_4:-65042650 | None:intergenic |
CCAAAAGCGGGAGTTGAAGA+AGG | 0.506648 | 3_4:-65042877 | None:intergenic |
ACACCAGCTTTCAGCACCCC+AGG | 0.510458 | 3_4:+65042844 | Msa0514370:CDS |
TTCTACCTGTCTAGTTATTG+TGG | 0.512168 | 3_4:-65046755 | None:intergenic |
TGTTGCTGCTGCTGTTGTTG+GGG | 0.517011 | 3_4:-65042970 | None:intergenic |
AGAGAACGGTGTTGAGAAGA+GGG | 0.519091 | 3_4:-65042935 | None:intergenic |
GATTATGATGGCTGAGGACA+TGG | 0.520825 | 3_4:+65047219 | Msa0514370:CDS |
TGTTTCAGTCTTTGAATCCA+AGG | 0.521920 | 3_4:-65046516 | None:intergenic |
ACAGGTATTGCAGCAGCAGA+TGG | 0.527438 | 3_4:+65047144 | Msa0514370:intron |
GATTCTTATAAAGAAGATGC+TGG | 0.529366 | 3_4:+65043248 | Msa0514370:CDS |
TGAGAATTTGGAAACGGCGA+AGG | 0.531345 | 3_4:-65043063 | None:intergenic |
AATCTTCCTACATTCTTGAA+GGG | 0.531796 | 3_4:+65047441 | Msa0514370:three_prime_UTR |
GGTAGAATCTTACCTCCTGC+AGG | 0.538215 | 3_4:-65046982 | None:intergenic |
GGAGTGCCGAATGCTGAAGA+TGG | 0.538730 | 3_4:-65042799 | None:intergenic |
ACTAGCCACAATAACTAGAC+AGG | 0.539256 | 3_4:+65046750 | Msa0514370:CDS |
ATCATGTGGGCGGAAGCTAT+GGG | 0.541380 | 3_4:+65044075 | Msa0514370:CDS |
CGTGTCAAGGCTAATAGCAA+TGG | 0.543360 | 3_4:+65046899 | Msa0514370:CDS |
CTGAAGATGGGGTCCCGAAG+AGG | 0.544355 | 3_4:-65042786 | None:intergenic |
CAGAGAACGGTGTTGAGAAG+AGG | 0.544554 | 3_4:-65042936 | None:intergenic |
GGAAGCTATGGGGAAGCTTG+AGG | 0.544713 | 3_4:+65044086 | Msa0514370:CDS |
GTTTATGTTGCTAGATCATG+TGG | 0.544933 | 3_4:+65044061 | Msa0514370:intron |
CTGAAAGCTGGTGTTGAAGA+AGG | 0.547067 | 3_4:-65042835 | None:intergenic |
AGGCCACAAACATCGCAAAT+GGG | 0.549395 | 3_4:-65047413 | None:intergenic |
TATTACCAAATCATGATACA+TGG | 0.551515 | 3_4:-65047330 | None:intergenic |
AGAATAGTGGAGGCGTTGGA+GGG | 0.552709 | 3_4:+65046676 | Msa0514370:CDS |
GAGTGCCGAATGCTGAAGAT+GGG | 0.561315 | 3_4:-65042798 | None:intergenic |
TGTTCTGAAGCGAGACGCAC+GGG | 0.561337 | 3_4:+65047189 | Msa0514370:CDS |
AACACTGCCAAGTCTTGCTA+TGG | 0.563127 | 3_4:-65047170 | None:intergenic |
GAAGAACCACCACCGAAAGC+GGG | 0.563527 | 3_4:-65042913 | None:intergenic |
GAAGAAGGAGTACCGAAAGT+TGG | 0.564163 | 3_4:-65042820 | None:intergenic |
GTGTTCTGAAGCGAGACGCA+CGG | 0.568554 | 3_4:+65047188 | Msa0514370:CDS |
GGAAGAACCACCACCGAAAG+CGG | 0.569387 | 3_4:-65042914 | None:intergenic |
TCCAGTTCCATTCTCACTAG+CGG | 0.572002 | 3_4:+65043113 | Msa0514370:CDS |
TGAAGATGGGGTCCCGAAGA+GGG | 0.572735 | 3_4:-65042785 | None:intergenic |
TTCAGCATACATGGTTAGCA+AGG | 0.574227 | 3_4:+65047464 | Msa0514370:three_prime_UTR |
GCTGAACCCTTCAAGAATGT+AGG | 0.576573 | 3_4:-65047447 | None:intergenic |
TGAAGATTGACCGCCGAACA+TGG | 0.577493 | 3_4:-65042758 | None:intergenic |
ATTGAAGGTGATGAGAATAG+TGG | 0.583298 | 3_4:+65046663 | Msa0514370:intron |
CAAAAGCGGGAGTTGAAGAA+GGG | 0.585231 | 3_4:-65042876 | None:intergenic |
GTAGAAGAAGCACCAAAAGC+GGG | 0.586298 | 3_4:-65042889 | None:intergenic |
TCTTCTACACCCGCTTTCGG+TGG | 0.586639 | 3_4:+65042904 | Msa0514370:CDS |
ACGGGATATGGAGATTATGA+TGG | 0.590444 | 3_4:+65047207 | Msa0514370:CDS |
TATGGAGATTATGATGGCTG+AGG | 0.590797 | 3_4:+65047213 | Msa0514370:CDS |
ATGGATGCCATAGCAAGACT+TGG | 0.599180 | 3_4:+65047163 | Msa0514370:CDS |
AGCAAGGGTATATTTGTCGG+AGG | 0.606225 | 3_4:+65047480 | Msa0514370:three_prime_UTR |
ATGGACAAATTACAAACCAA+AGG | 0.608304 | 3_4:-65047311 | None:intergenic |
CAGGCTTCACCCTAAACTGT+GGG | 0.612681 | 3_4:-65043939 | None:intergenic |
ATTATGATGGCTGAGGACAT+GGG | 0.618742 | 3_4:+65047220 | Msa0514370:CDS |
CTTACATCTGAAACACCAGC+AGG | 0.625885 | 3_4:-65043958 | None:intergenic |
CCGTATTCCATTAACAAAAG+GGG | 0.630334 | 3_4:+65046708 | Msa0514370:CDS |
AAACCTTAAAAGCGTATTTG+GGG | 0.630724 | 3_4:-65043274 | None:intergenic |
TGGAGCGGAATTATCTAGAA+GGG | 0.631061 | 3_4:+65046853 | Msa0514370:CDS |
GGTTGTTGTTGAGCAGAGAA+CGG | 0.632380 | 3_4:-65042949 | None:intergenic |
TCAGCTGAAAGGATCTGGAG+CGG | 0.638114 | 3_4:+65046838 | Msa0514370:intron |
CCGCCGAACATGGTGGTGTG+CGG | 0.642470 | 3_4:-65042748 | None:intergenic |
TGTAGAAGAAGCACCAAAAG+CGG | 0.643383 | 3_4:-65042890 | None:intergenic |
GCAGGCTTCACCCTAAACTG+TGG | 0.646030 | 3_4:-65043940 | None:intergenic |
GAAGGTGATGAGAATAGTGG+AGG | 0.650075 | 3_4:+65046666 | Msa0514370:intron |
ACTCGGCGTATCTCGTGTCA+AGG | 0.651033 | 3_4:+65046886 | Msa0514370:CDS |
AGAAGGGTACAAAATCTACT+CGG | 0.654843 | 3_4:+65046869 | Msa0514370:CDS |
TGGGTTTCAGAATTCTACGC+CGG | 0.655438 | 3_4:+65043032 | Msa0514370:CDS |
CCGCACACCACCATGTTCGG+CGG | 0.655972 | 3_4:+65042748 | Msa0514370:exon |
AAGTCTGGCTGACCTGCAGG+AGG | 0.657558 | 3_4:+65046970 | Msa0514370:CDS |
TCAGCATACATGGTTAGCAA+GGG | 0.662415 | 3_4:+65047465 | Msa0514370:three_prime_UTR |
TCATGTGGGCGGAAGCTATG+GGG | 0.675093 | 3_4:+65044076 | Msa0514370:CDS |
TTTATGTTGCTAGATCATGT+GGG | 0.694092 | 3_4:+65044062 | Msa0514370:intron |
ATGTTGCTAGATCATGTGGG+CGG | 0.703435 | 3_4:+65044065 | Msa0514370:intron |
AAAAGCGGGAGTTGAAGAAG+GGG | 0.703806 | 3_4:-65042875 | None:intergenic |
AGAAGGGGTACCGAAGCCTG+GGG | 0.706896 | 3_4:-65042860 | None:intergenic |
AGTGCCGAATGCTGAAGATG+GGG | 0.747720 | 3_4:-65042797 | None:intergenic |
AGATTGACCGCCGAACATGG+TGG | 0.846340 | 3_4:-65042755 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTCTTCATTTAAAATTTATT+TGG | + | chr3_4:65043311-65043330 | Msa0514370:intron | 10.0% |
!!! | TAAAATTTATTTGGAATTAT+AGG | + | chr3_4:65043320-65043339 | Msa0514370:intron | 10.0% |
!!! | AAAATTTATTTGGAATTATA+GGG | + | chr3_4:65043321-65043340 | Msa0514370:intron | 10.0% |
!!! | AGTTTAATTTTTAGTAAAAT+AGG | + | chr3_4:65044599-65044618 | Msa0514370:intron | 10.0% |
!!! | GTTTAATTTTTAGTAAAATA+GGG | + | chr3_4:65044600-65044619 | Msa0514370:intron | 10.0% |
!!! | TTTAATTTTTAGTAAAATAG+GGG | + | chr3_4:65044601-65044620 | Msa0514370:intron | 10.0% |
!!! | AAACTAGTTGATTAAATTTT+TGG | + | chr3_4:65043552-65043571 | Msa0514370:intron | 15.0% |
!!! | AGCTTATAACTTATTTTTAT+TGG | - | chr3_4:65043752-65043771 | None:intergenic | 15.0% |
!!! | TTTTTTATAGTGTTTAAAAC+AGG | + | chr3_4:65044254-65044273 | Msa0514370:intron | 15.0% |
!!! | TTTTTATAGTGTTTAAAACA+GGG | + | chr3_4:65044255-65044274 | Msa0514370:intron | 15.0% |
!!! | AATATTTGGAAATTTTATGA+TGG | - | chr3_4:65044395-65044414 | None:intergenic | 15.0% |
!! | ATCATAAAATTTCCAAATAT+TGG | + | chr3_4:65044394-65044413 | Msa0514370:intron | 15.0% |
!! | TGTTTATAATAGATTTAGAA+TGG | - | chr3_4:65044680-65044699 | None:intergenic | 15.0% |
!! | ATTTATTCTAACAAGAAAAT+GGG | - | chr3_4:65045044-65045063 | None:intergenic | 15.0% |
!! | TATTTATTCTAACAAGAAAA+TGG | - | chr3_4:65045045-65045064 | None:intergenic | 15.0% |
!! | TTAATTAACAAGTTAAAACA+AGG | + | chr3_4:65045087-65045106 | Msa0514370:intron | 15.0% |
!! | CTAAAACAACTAAAATTAAT+AGG | - | chr3_4:65045892-65045911 | None:intergenic | 15.0% |
!! | TATTGATCTAATACTAAAAT+TGG | - | chr3_4:65046106-65046125 | None:intergenic | 15.0% |
!!! | TTATCTTTGTTTTTCCAATT+AGG | + | chr3_4:65043217-65043236 | Msa0514370:intron | 20.0% |
!! | TTTGGATAAATAGCTTAATT+AGG | - | chr3_4:65043367-65043386 | None:intergenic | 20.0% |
!!! | TTGATTAAATTTTTGGTGTT+TGG | + | chr3_4:65043559-65043578 | Msa0514370:intron | 20.0% |
!! | AGAAAATAAAACGTATTAGA+TGG | - | chr3_4:65044293-65044312 | None:intergenic | 20.0% |
!!! | TTATTTTCTTTACCAATTTG+TGG | + | chr3_4:65044304-65044323 | Msa0514370:intron | 20.0% |
!! | AAAATTTCCAAATATTGGTA+TGG | + | chr3_4:65044399-65044418 | Msa0514370:intron | 20.0% |
!! | ATTATAGCAATGAATTTGAT+AGG | + | chr3_4:65044484-65044503 | Msa0514370:intron | 20.0% |
!! | TATTTAACATCTAAATTGCA+AGG | - | chr3_4:65044709-65044728 | None:intergenic | 20.0% |
!! | AGAAATGTCATGTAATTTAT+AGG | - | chr3_4:65045610-65045629 | None:intergenic | 20.0% |
!!! | ACATTTTAAATGAAGTTGAT+CGG | + | chr3_4:65045651-65045670 | Msa0514370:intron | 20.0% |
!! | TTATTAATATAGCATGTGTT+TGG | + | chr3_4:65045953-65045972 | Msa0514370:intron | 20.0% |
!! | TATTAATATAGCATGTGTTT+GGG | + | chr3_4:65045954-65045973 | Msa0514370:intron | 20.0% |
!! | TATATTGAAATATGCCATAA+TGG | + | chr3_4:65046161-65046180 | Msa0514370:intron | 20.0% |
!! | AATTAGAAACTGTTGAAATA+CGG | + | chr3_4:65046265-65046284 | Msa0514370:intron | 20.0% |
!! | AAAACCTTAAAAGCGTATTT+GGG | - | chr3_4:65043278-65043297 | None:intergenic | 25.0% |
! | ATGATAAATTAGGTTCTGTT+TGG | - | chr3_4:65043385-65043404 | None:intergenic | 25.0% |
! | GAAACAGCTTATGATAAATT+AGG | - | chr3_4:65043395-65043414 | None:intergenic | 25.0% |
!! | AGACAATTTAAGACAGATTA+TGG | - | chr3_4:65043417-65043436 | None:intergenic | 25.0% |
! | AGCAGAAAAAATTTACCTTA+AGG | - | chr3_4:65044182-65044201 | None:intergenic | 25.0% |
! | AAAGTTTAATTCCGATGTTT+GGG | - | chr3_4:65044364-65044383 | None:intergenic | 25.0% |
! | AAAAGTTTAATTCCGATGTT+TGG | - | chr3_4:65044365-65044384 | None:intergenic | 25.0% |
! | AAAACTACCATACCAATATT+TGG | - | chr3_4:65044409-65044428 | None:intergenic | 25.0% |
! | TAATGATAGGTGAAATTGAA+TGG | - | chr3_4:65044435-65044454 | None:intergenic | 25.0% |
! | TAGATATCCAAACAGAAAAT+AGG | + | chr3_4:65044453-65044472 | Msa0514370:intron | 25.0% |
!! | CTTGAATATACGATTTTAGA+AGG | + | chr3_4:65044532-65044551 | Msa0514370:intron | 25.0% |
!!! | TATACGATTTTAGAAGGAAA+TGG | + | chr3_4:65044538-65044557 | Msa0514370:intron | 25.0% |
! | TAAAATCAAGTTCAAATGTC+TGG | - | chr3_4:65044793-65044812 | None:intergenic | 25.0% |
!! | GTTCTATTTTCAAAACAAAC+TGG | + | chr3_4:65044938-65044957 | Msa0514370:intron | 25.0% |
! | TTAAAACAAGGCATAACATA+TGG | + | chr3_4:65045099-65045118 | Msa0514370:intron | 25.0% |
! | TAAAACAAGGCATAACATAT+GGG | + | chr3_4:65045100-65045119 | Msa0514370:intron | 25.0% |
! | TGTGAAAAGTAGAACAAAAT+AGG | + | chr3_4:65045144-65045163 | Msa0514370:intron | 25.0% |
! | GTCAATTCTAAGTAAAATGT+TGG | + | chr3_4:65045185-65045204 | Msa0514370:intron | 25.0% |
!!! | ACTTAAGCTGTTTTTGAAAA+GGG | - | chr3_4:65045312-65045331 | None:intergenic | 25.0% |
!!! | AACTTAAGCTGTTTTTGAAA+AGG | - | chr3_4:65045313-65045332 | None:intergenic | 25.0% |
!! | GAAATATATGCTTTTCTGAA+AGG | - | chr3_4:65045366-65045385 | None:intergenic | 25.0% |
! | ATAATGATGTGGAAATGAAA+GGG | - | chr3_4:65045419-65045438 | None:intergenic | 25.0% |
!!! | TTTTTTCTCAACTTTTGTTG+TGG | - | chr3_4:65045783-65045802 | None:intergenic | 25.0% |
! | AAACGAGAGAAATATGATAT+GGG | + | chr3_4:65045912-65045931 | Msa0514370:intron | 25.0% |
!!! | AATAACCATGCCTTTTAATT+TGG | - | chr3_4:65045938-65045957 | None:intergenic | 25.0% |
! | ATGGGAATAATATATGCTAA+AGG | + | chr3_4:65046039-65046058 | Msa0514370:intron | 25.0% |
! | ATATGCTAAAGGATAAGTTA+AGG | + | chr3_4:65046050-65046069 | Msa0514370:intron | 25.0% |
! | AATATATACAACTCTTCACT+GGG | + | chr3_4:65046134-65046153 | Msa0514370:intron | 25.0% |
! | ATTAGAAACTGTTGAAATAC+GGG | + | chr3_4:65046266-65046285 | Msa0514370:intron | 25.0% |
!!! | TACCATTTTAACATTGCTTT+GGG | - | chr3_4:65046374-65046393 | None:intergenic | 25.0% |
!!! | ATACCATTTTAACATTGCTT+TGG | - | chr3_4:65046375-65046394 | None:intergenic | 25.0% |
! | ATATGATTAGACATAATGAG+GGG | - | chr3_4:65046637-65046656 | None:intergenic | 25.0% |
! | CATATGATTAGACATAATGA+GGG | - | chr3_4:65046638-65046657 | None:intergenic | 25.0% |
! | ACATATGATTAGACATAATG+AGG | - | chr3_4:65046639-65046658 | None:intergenic | 25.0% |
! | TATTACCAAATCATGATACA+TGG | - | chr3_4:65047333-65047352 | None:intergenic | 25.0% |
! | TTCTGAAAGCAAAAAGCAAA+AGG | - | chr3_4:65042677-65042696 | None:intergenic | 30.0% |
GTCAATTGAGAATTTGGAAA+CGG | - | chr3_4:65043072-65043091 | None:intergenic | 30.0% | |
TGAGTAGTCAATTGAGAATT+TGG | - | chr3_4:65043078-65043097 | None:intergenic | 30.0% | |
TTCTCAATTGACTACTCAAA+TGG | + | chr3_4:65043080-65043099 | Msa0514370:CDS | 30.0% | |
GATTCTTATAAAGAAGATGC+TGG | + | chr3_4:65043248-65043267 | Msa0514370:CDS | 30.0% | |
! | AAACCTTAAAAGCGTATTTG+GGG | - | chr3_4:65043277-65043296 | None:intergenic | 30.0% |
! | GAAAACCTTAAAAGCGTATT+TGG | - | chr3_4:65043279-65043298 | None:intergenic | 30.0% |
TTTAAATGAAGAAGACAGAG+AGG | - | chr3_4:65043304-65043323 | None:intergenic | 30.0% | |
! | TATTTGGAATTATAGGGTCA+TGG | + | chr3_4:65043327-65043346 | Msa0514370:intron | 30.0% |
AATTATAGGGTCATGGATAT+AGG | + | chr3_4:65043334-65043353 | Msa0514370:intron | 30.0% | |
ATTATAGGGTCATGGATATA+GGG | + | chr3_4:65043335-65043354 | Msa0514370:intron | 30.0% | |
GTCTAAGTTACTGTTTGAAT+CGG | - | chr3_4:65043464-65043483 | None:intergenic | 30.0% | |
GCTTATAAGTTAACTTACAG+CGG | + | chr3_4:65043509-65043528 | Msa0514370:intron | 30.0% | |
ATAAGCTTGTGAGAAAATGA+CGG | + | chr3_4:65043765-65043784 | Msa0514370:intron | 30.0% | |
ATCAGCTCATATGACTAAAA+AGG | - | chr3_4:65043804-65043823 | None:intergenic | 30.0% | |
ATGAGAAAACATGAAAGCTA+CGG | - | chr3_4:65043871-65043890 | None:intergenic | 30.0% | |
TTTATGTTGCTAGATCATGT+GGG | + | chr3_4:65044062-65044081 | Msa0514370:intron | 30.0% | |
!! | TTAAAACCTTGAACTTGTTG+TGG | - | chr3_4:65044144-65044163 | None:intergenic | 30.0% |
! | ACAACAAGTTCAAGGTTTTA+AGG | + | chr3_4:65044143-65044162 | Msa0514370:CDS | 30.0% |
! | AAAATTTACCTTAAGGCGTT+GGG | - | chr3_4:65044175-65044194 | None:intergenic | 30.0% |
AAAAATTTACCTTAAGGCGT+TGG | - | chr3_4:65044176-65044195 | None:intergenic | 30.0% | |
TATGTTTGGATTGATTGGAA+GGG | + | chr3_4:65044206-65044225 | Msa0514370:intron | 30.0% | |
! | TATAGTGTTTAAAACAGGGT+TGG | + | chr3_4:65044259-65044278 | Msa0514370:intron | 30.0% |
CTGTTTGGATATCTAATGAT+AGG | - | chr3_4:65044448-65044467 | None:intergenic | 30.0% | |
GAATTTGATAGGTTAACTAC+TGG | + | chr3_4:65044495-65044514 | Msa0514370:intron | 30.0% | |
AAGGAAATGGATGTTCATAT+GGG | + | chr3_4:65044551-65044570 | Msa0514370:intron | 30.0% | |
AACATCTAAATTGCAAGGTA+AGG | - | chr3_4:65044704-65044723 | None:intergenic | 30.0% | |
TTTCAAAACAAACTGGTGAT+AGG | + | chr3_4:65044945-65044964 | Msa0514370:intron | 30.0% | |
ATATATATATAGACGTGCGT+CGG | + | chr3_4:65044986-65045005 | Msa0514370:intron | 30.0% | |
!!! | TATGGGTTTTGTTTCATGTT+TGG | + | chr3_4:65045117-65045136 | Msa0514370:intron | 30.0% |
AAAAAATGAAACTGAACAGC+TGG | - | chr3_4:65045232-65045251 | None:intergenic | 30.0% | |
! | AAATGAAAAAGGTGTAGTGT+AGG | - | chr3_4:65045272-65045291 | None:intergenic | 30.0% |
!! | TACACTACACCTTTTTCATT+TGG | + | chr3_4:65045271-65045290 | Msa0514370:intron | 30.0% |
!! | AGTTTTGGTCCAAATGAAAA+AGG | - | chr3_4:65045283-65045302 | None:intergenic | 30.0% |
!! | TCAAAAACAGCTTAAGTTGA+TGG | + | chr3_4:65045315-65045334 | Msa0514370:intron | 30.0% |
TAATGATGTGGAAATGAAAG+GGG | - | chr3_4:65045418-65045437 | None:intergenic | 30.0% | |
CATAATGATGTGGAAATGAA+AGG | - | chr3_4:65045420-65045439 | None:intergenic | 30.0% | |
TGATTGATTGCATAATGATG+TGG | - | chr3_4:65045430-65045449 | None:intergenic | 30.0% | |
! | TGTAAATCCCCATTTTGTAA+CGG | + | chr3_4:65045527-65045546 | Msa0514370:intron | 30.0% |
! | TGACATTTGATGATAGAAAG+AGG | + | chr3_4:65045817-65045836 | Msa0514370:intron | 30.0% |
! | ATTTGATGATAGAAAGAGGT+AGG | + | chr3_4:65045821-65045840 | Msa0514370:intron | 30.0% |
GAAACGAGAGAAATATGATA+TGG | + | chr3_4:65045911-65045930 | Msa0514370:intron | 30.0% | |
ATGATATGGGCCAAATTAAA+AGG | + | chr3_4:65045925-65045944 | Msa0514370:intron | 30.0% | |
CATATATTATTCCCATTCGT+AGG | - | chr3_4:65046035-65046054 | None:intergenic | 30.0% | |
GAATATATACAACTCTTCAC+TGG | + | chr3_4:65046133-65046152 | Msa0514370:intron | 30.0% | |
TGAGTAAAAATGTGTCATCA+AGG | - | chr3_4:65046292-65046311 | None:intergenic | 30.0% | |
AACCCAAAGCAATGTTAAAA+TGG | + | chr3_4:65046369-65046388 | Msa0514370:CDS | 30.0% | |
GATAGGTTAGCATAAAAAAC+CGG | - | chr3_4:65046439-65046458 | None:intergenic | 30.0% | |
TATCTGCTTGAAAATGTCTT+TGG | - | chr3_4:65046491-65046510 | None:intergenic | 30.0% | |
!! | AGCAACGTATTTTAAGAGTA+TGG | + | chr3_4:65046556-65046575 | Msa0514370:intron | 30.0% |
TAATCATATGTCGTGATTGA+AGG | + | chr3_4:65046648-65046667 | Msa0514370:intron | 30.0% | |
! | AAAATGTCTTTTCAGCTGAA+AGG | + | chr3_4:65046827-65046846 | Msa0514370:intron | 30.0% |
TAAACCTCATATTGCCATAT+TGG | - | chr3_4:65047006-65047025 | None:intergenic | 30.0% | |
GAAGAACTCAATGTTAATGA+TGG | + | chr3_4:65047107-65047126 | Msa0514370:intron | 30.0% | |
! | CATTAAATGTCCATTTTCTG+AGG | - | chr3_4:65047248-65047267 | None:intergenic | 30.0% |
! | TCTTACTTCGTATTTTCCTT+TGG | + | chr3_4:65047295-65047314 | Msa0514370:three_prime_UTR | 30.0% |
ATGGACAAATTACAAACCAA+AGG | - | chr3_4:65047314-65047333 | None:intergenic | 30.0% | |
TTTGTCCATGTATCATGATT+TGG | + | chr3_4:65047325-65047344 | Msa0514370:three_prime_UTR | 30.0% | |
GAATGTAGGAAGATTCAAAT+AGG | - | chr3_4:65047436-65047455 | None:intergenic | 30.0% | |
AATCTTCCTACATTCTTGAA+GGG | + | chr3_4:65047441-65047460 | Msa0514370:three_prime_UTR | 30.0% | |
!! | AGGATTTTGGAAAAAAGTGA+TGG | + | chr3_4:65047500-65047519 | Msa0514370:three_prime_UTR | 30.0% |
TTTCAACTATCACCTTCTAC+TGG | + | chr3_4:65043006-65043025 | Msa0514370:CDS | 35.0% | |
!!! | TATCACCTTCTACTGGTTTT+GGG | + | chr3_4:65043013-65043032 | Msa0514370:CDS | 35.0% |
AGAATCAAGAATCGCCTAAT+TGG | - | chr3_4:65043234-65043253 | None:intergenic | 35.0% | |
! | AAACCCCAAATACGCTTTTA+AGG | + | chr3_4:65043271-65043290 | Msa0514370:CDS | 35.0% |
AGAAAATGACGGTTACCAAA+CGG | + | chr3_4:65043776-65043795 | Msa0514370:intron | 35.0% | |
ATGACTAAAAAGGATCCGTT+TGG | - | chr3_4:65043794-65043813 | None:intergenic | 35.0% | |
! | GCTTTCATGTTTTCTCATGT+TGG | + | chr3_4:65043873-65043892 | Msa0514370:intron | 35.0% |
! | TTTTTCTTATGTCATGCCAC+TGG | + | chr3_4:65044022-65044041 | Msa0514370:intron | 35.0% |
GTTTATGTTGCTAGATCATG+TGG | + | chr3_4:65044061-65044080 | Msa0514370:intron | 35.0% | |
! | TTTTTCTGCTCCACTATGTT+TGG | + | chr3_4:65044192-65044211 | Msa0514370:intron | 35.0% |
TCCACTATGTTTGGATTGAT+TGG | + | chr3_4:65044201-65044220 | Msa0514370:intron | 35.0% | |
TCCAATCAATCCAAACATAG+TGG | - | chr3_4:65044205-65044224 | None:intergenic | 35.0% | |
CTATGTTTGGATTGATTGGA+AGG | + | chr3_4:65044205-65044224 | Msa0514370:intron | 35.0% | |
ATGTTTGGATTGATTGGAAG+GGG | + | chr3_4:65044207-65044226 | Msa0514370:intron | 35.0% | |
TCTTTACCAATTTGTGGCTA+TGG | + | chr3_4:65044310-65044329 | Msa0514370:intron | 35.0% | |
! | TACGATGCCTATTTTCTGTT+TGG | - | chr3_4:65044463-65044482 | None:intergenic | 35.0% |
GAAGGAAATGGATGTTCATA+TGG | + | chr3_4:65044550-65044569 | Msa0514370:intron | 35.0% | |
AGGAAATGGATGTTCATATG+GGG | + | chr3_4:65044552-65044571 | Msa0514370:intron | 35.0% | |
TTAGTAAAATAGGGGAAACC+TGG | + | chr3_4:65044609-65044628 | Msa0514370:intron | 35.0% | |
CTCTGCTTTAGTATAAACCA+TGG | - | chr3_4:65044861-65044880 | None:intergenic | 35.0% | |
! | TTGCTGATGTCAAGATTTTG+TGG | + | chr3_4:65044888-65044907 | Msa0514370:intron | 35.0% |
! | TGAAAAGGGAGAATGAGTTT+TGG | - | chr3_4:65045298-65045317 | None:intergenic | 35.0% |
AATGATGTGGAAATGAAAGG+GGG | - | chr3_4:65045417-65045436 | None:intergenic | 35.0% | |
! | AACAGCTACTCTGTGTTATT+AGG | - | chr3_4:65045492-65045511 | None:intergenic | 35.0% |
AATGCATCCGTTACAAAATG+GGG | - | chr3_4:65045537-65045556 | None:intergenic | 35.0% | |
CAATGCATCCGTTACAAAAT+GGG | - | chr3_4:65045538-65045557 | None:intergenic | 35.0% | |
TTCTACTCTAGTCTCTGTTA+TGG | + | chr3_4:65045626-65045645 | Msa0514370:intron | 35.0% | |
GACTAACATACCAATCTTTG+CGG | - | chr3_4:65045727-65045746 | None:intergenic | 35.0% | |
!! | TTTCTCAACTTTTGTTGTGG+CGG | - | chr3_4:65045780-65045799 | None:intergenic | 35.0% |
AGTCATGTTCCTAAAAGCTT+TGG | - | chr3_4:65046080-65046099 | None:intergenic | 35.0% | |
! | TTTTTGCACCAAATACTGAC+TGG | - | chr3_4:65046216-65046235 | None:intergenic | 35.0% |
TCCCAAGAAAAATGTTGAAC+CGG | + | chr3_4:65046411-65046430 | Msa0514370:intron | 35.0% | |
!! | ACCGGTTCAACATTTTTCTT+GGG | - | chr3_4:65046415-65046434 | None:intergenic | 35.0% |
!!! | TACCGGTTCAACATTTTTCT+TGG | - | chr3_4:65046416-65046435 | None:intergenic | 35.0% |
TTAGCATAAAAAACCGGTAC+CGG | - | chr3_4:65046433-65046452 | None:intergenic | 35.0% | |
CATCAGAGAATCGAAAAGAT+AGG | - | chr3_4:65046456-65046475 | None:intergenic | 35.0% | |
! | CTATCTTTTCGATTCTCTGA+TGG | + | chr3_4:65046454-65046473 | Msa0514370:intron | 35.0% |
TGTTTCAGTCTTTGAATCCA+AGG | - | chr3_4:65046519-65046538 | None:intergenic | 35.0% | |
ATTGAAGGTGATGAGAATAG+TGG | + | chr3_4:65046663-65046682 | Msa0514370:intron | 35.0% | |
TGCCGTATTCCATTAACAAA+AGG | + | chr3_4:65046706-65046725 | Msa0514370:CDS | 35.0% | |
GCCGTATTCCATTAACAAAA+GGG | + | chr3_4:65046707-65046726 | Msa0514370:CDS | 35.0% | |
! | CCCCTTTTGTTAATGGAATA+CGG | - | chr3_4:65046711-65046730 | None:intergenic | 35.0% |
CCGTATTCCATTAACAAAAG+GGG | + | chr3_4:65046708-65046727 | Msa0514370:CDS | 35.0% | |
TTCTACCTGTCTAGTTATTG+TGG | - | chr3_4:65046758-65046777 | None:intergenic | 35.0% | |
! | AGAAGGGTACAAAATCTACT+CGG | + | chr3_4:65046869-65046888 | Msa0514370:CDS | 35.0% |
! | AAGGCTAATAGCAATGGATT+TGG | + | chr3_4:65046905-65046924 | Msa0514370:CDS | 35.0% |
! | CAGACTTTGATCGTGAATTT+TGG | - | chr3_4:65046957-65046976 | None:intergenic | 35.0% |
CAAAATTCACGATCAAAGTC+TGG | + | chr3_4:65046955-65046974 | Msa0514370:CDS | 35.0% | |
GAGGTAAGATTCTACCAATA+TGG | + | chr3_4:65046989-65047008 | Msa0514370:intron | 35.0% | |
TCTACCAATATGGCAATATG+AGG | + | chr3_4:65046999-65047018 | Msa0514370:intron | 35.0% | |
! | ATAGTGAGCACAGTAGTTTT+AGG | + | chr3_4:65047352-65047371 | Msa0514370:three_prime_UTR | 35.0% |
!! | TAGTGAGCACAGTAGTTTTA+GGG | + | chr3_4:65047353-65047372 | Msa0514370:three_prime_UTR | 35.0% |
GAATCTTCCTACATTCTTGA+AGG | + | chr3_4:65047440-65047459 | Msa0514370:three_prime_UTR | 35.0% | |
! | GTTAGCAAGGGTATATTTGT+CGG | + | chr3_4:65047477-65047496 | Msa0514370:three_prime_UTR | 35.0% |
! | GTATATTTGTCGGAGGATTT+TGG | + | chr3_4:65047487-65047506 | Msa0514370:three_prime_UTR | 35.0% |
GCGCTTAAATTTAGCAGTCT+AGG | - | chr3_4:65042653-65042672 | None:intergenic | 40.0% | |
CAATCTTCATCTTCCCTCTT+CGG | + | chr3_4:65042772-65042791 | Msa0514370:CDS | 40.0% | |
AATCTTCATCTTCCCTCTTC+GGG | + | chr3_4:65042773-65042792 | Msa0514370:CDS | 40.0% | |
!! | TGTAGAAGAAGCACCAAAAG+CGG | - | chr3_4:65042893-65042912 | None:intergenic | 40.0% |
!!! | CTATCACCTTCTACTGGTTT+TGG | + | chr3_4:65043012-65043031 | Msa0514370:CDS | 40.0% |
TGAAACCCAAAACCAGTAGA+AGG | - | chr3_4:65043021-65043040 | None:intergenic | 40.0% | |
ATGAAAGCTACGGTTCTGTT+TGG | - | chr3_4:65043861-65043880 | None:intergenic | 40.0% | |
TGTAACAGACCCACAGTTTA+GGG | + | chr3_4:65043930-65043949 | Msa0514370:CDS | 40.0% | |
TACCAACTAGAATGCTCAGT+GGG | - | chr3_4:65043997-65044016 | None:intergenic | 40.0% | |
!! | TCATGCCACTGGCTAATTTT+GGG | + | chr3_4:65044033-65044052 | Msa0514370:intron | 40.0% |
TATTCCCCAAAATTAGCCAG+TGG | - | chr3_4:65044041-65044060 | None:intergenic | 40.0% | |
GTGCATAGAAAGGACTCAAT+TGG | + | chr3_4:65044229-65044248 | Msa0514370:intron | 40.0% | |
AATGGATGTTCATATGGGGT+TGG | + | chr3_4:65044556-65044575 | Msa0514370:intron | 40.0% | |
ATGGATGTTCATATGGGGTT+GGG | + | chr3_4:65044557-65044576 | Msa0514370:intron | 40.0% | |
AACTGAGCTTCCATGATAGT+TGG | + | chr3_4:65044635-65044654 | Msa0514370:intron | 40.0% | |
TTCCATGATAGTTGGATCCA+AGG | + | chr3_4:65044643-65044662 | Msa0514370:intron | 40.0% | |
TTCCTTGGATCCAACTATCA+TGG | - | chr3_4:65044648-65044667 | None:intergenic | 40.0% | |
! | GAATGGATTTGAGTCTTCCT+TGG | - | chr3_4:65044663-65044682 | None:intergenic | 40.0% |
GGTGATAGGAAGTGATATGA+AGG | + | chr3_4:65044959-65044978 | Msa0514370:intron | 40.0% | |
TAGGACAGACGTTGAGAAAA+AGG | + | chr3_4:65045163-65045182 | Msa0514370:intron | 40.0% | |
GGTGTAGTGTAGGTAACATT+TGG | - | chr3_4:65045262-65045281 | None:intergenic | 40.0% | |
CCAATGCATCCGTTACAAAA+TGG | - | chr3_4:65045539-65045558 | None:intergenic | 40.0% | |
!!! | CCATTTTGTAACGGATGCAT+TGG | + | chr3_4:65045536-65045555 | Msa0514370:intron | 40.0% |
!! | TGTAACGGATGCATTGGAAA+AGG | + | chr3_4:65045542-65045561 | Msa0514370:intron | 40.0% |
ATGATAGAAAGAGGTAGGAG+TGG | + | chr3_4:65045826-65045845 | Msa0514370:intron | 40.0% | |
ATGGGCCAAATTAAAAGGCA+TGG | + | chr3_4:65045930-65045949 | Msa0514370:intron | 40.0% | |
! | ATAGCATGTGTTTGGGATCA+TGG | + | chr3_4:65045961-65045980 | Msa0514370:intron | 40.0% |
AGAAGGACAATGCACAAACT+TGG | - | chr3_4:65046010-65046029 | None:intergenic | 40.0% | |
TTGTCCTTCTAACCTACGAA+TGG | + | chr3_4:65046020-65046039 | Msa0514370:intron | 40.0% | |
TGTCCTTCTAACCTACGAAT+GGG | + | chr3_4:65046021-65046040 | Msa0514370:intron | 40.0% | |
ATTCCCATTCGTAGGTTAGA+AGG | - | chr3_4:65046027-65046046 | None:intergenic | 40.0% | |
! | TAAGGAGAGCCAAAGCTTTT+AGG | + | chr3_4:65046068-65046087 | Msa0514370:intron | 40.0% |
ATATACAACTCTTCACTGGG+TGG | + | chr3_4:65046137-65046156 | Msa0514370:intron | 40.0% | |
TGTATCCACCAGTCAGTATT+TGG | + | chr3_4:65046205-65046224 | Msa0514370:intron | 40.0% | |
CAGAGACAATGACTTCATCT+TGG | - | chr3_4:65046330-65046349 | None:intergenic | 40.0% | |
! | AACATTTTTCTTGGGAGAGC+AGG | - | chr3_4:65046407-65046426 | None:intergenic | 40.0% |
GAAAAATGTTGAACCGGTAC+CGG | + | chr3_4:65046417-65046436 | Msa0514370:intron | 40.0% | |
TTCAAGCAGATACTCTTCCT+TGG | + | chr3_4:65046499-65046518 | Msa0514370:CDS | 40.0% | |
! | TCAGCTTCCCCTTTTGTTAA+TGG | - | chr3_4:65046718-65046737 | None:intergenic | 40.0% |
ACTAGCCACAATAACTAGAC+AGG | + | chr3_4:65046750-65046769 | Msa0514370:CDS | 40.0% | |
! | TCTTTTCAGCTGAAAGGATC+TGG | + | chr3_4:65046833-65046852 | Msa0514370:intron | 40.0% |
TGGAGCGGAATTATCTAGAA+GGG | + | chr3_4:65046853-65046872 | Msa0514370:CDS | 40.0% | |
ACGGGATATGGAGATTATGA+TGG | + | chr3_4:65047207-65047226 | Msa0514370:CDS | 40.0% | |
TATGGAGATTATGATGGCTG+AGG | + | chr3_4:65047213-65047232 | Msa0514370:CDS | 40.0% | |
ATTATGATGGCTGAGGACAT+GGG | + | chr3_4:65047220-65047239 | Msa0514370:CDS | 40.0% | |
TTCAGCATACATGGTTAGCA+AGG | + | chr3_4:65047464-65047483 | Msa0514370:three_prime_UTR | 40.0% | |
TCAGCATACATGGTTAGCAA+GGG | + | chr3_4:65047465-65047484 | Msa0514370:three_prime_UTR | 40.0% | |
GAAAAAAGTGATGGCATGTG+AGG | + | chr3_4:65047509-65047528 | Msa0514370:three_prime_UTR | 40.0% | |
!! | GAAGAAGGAGTACCGAAAGT+TGG | - | chr3_4:65042823-65042842 | None:intergenic | 45.0% |
! | CTGAAAGCTGGTGTTGAAGA+AGG | - | chr3_4:65042838-65042857 | None:intergenic | 45.0% |
AAAAGCGGGAGTTGAAGAAG+GGG | - | chr3_4:65042878-65042897 | None:intergenic | 45.0% | |
CAAAAGCGGGAGTTGAAGAA+GGG | - | chr3_4:65042879-65042898 | None:intergenic | 45.0% | |
!! | GTAGAAGAAGCACCAAAAGC+GGG | - | chr3_4:65042892-65042911 | None:intergenic | 45.0% |
! | AGAGAACGGTGTTGAGAAGA+GGG | - | chr3_4:65042938-65042957 | None:intergenic | 45.0% |
! | GGTTGTTGTTGAGCAGAGAA+CGG | - | chr3_4:65042952-65042971 | None:intergenic | 45.0% |
TTGTTGCTGCTGCTGTTGTT+GGG | - | chr3_4:65042974-65042993 | None:intergenic | 45.0% | |
TGGGTTTCAGAATTCTACGC+CGG | + | chr3_4:65043032-65043051 | Msa0514370:CDS | 45.0% | |
TGAGAATTTGGAAACGGCGA+AGG | - | chr3_4:65043066-65043085 | None:intergenic | 45.0% | |
TCCAGTTCCATTCTCACTAG+CGG | + | chr3_4:65043113-65043132 | Msa0514370:CDS | 45.0% | |
GTGTAACAGACCCACAGTTT+AGG | + | chr3_4:65043929-65043948 | Msa0514370:CDS | 45.0% | |
! | CTTACATCTGAAACACCAGC+AGG | - | chr3_4:65043961-65043980 | None:intergenic | 45.0% |
TTCCCACTGAGCATTCTAGT+TGG | + | chr3_4:65043992-65044011 | Msa0514370:intron | 45.0% | |
CTACCAACTAGAATGCTCAG+TGG | - | chr3_4:65043998-65044017 | None:intergenic | 45.0% | |
!! | GTCATGCCACTGGCTAATTT+TGG | + | chr3_4:65044032-65044051 | Msa0514370:intron | 45.0% |
!! | CATGCCACTGGCTAATTTTG+GGG | + | chr3_4:65044034-65044053 | Msa0514370:intron | 45.0% |
ATGTTGCTAGATCATGTGGG+CGG | + | chr3_4:65044065-65044084 | Msa0514370:intron | 45.0% | |
! | GTGCTGATAGAGAACGTCTT+TGG | + | chr3_4:65044118-65044137 | Msa0514370:CDS | 45.0% |
CTTTGGCCACAACAAGTTCA+AGG | + | chr3_4:65044135-65044154 | Msa0514370:CDS | 45.0% | |
! | ATTGGAAGGGGTGCATAGAA+AGG | + | chr3_4:65044219-65044238 | Msa0514370:intron | 45.0% |
GTAGCTCCATAGCCACAAAT+TGG | - | chr3_4:65044319-65044338 | None:intergenic | 45.0% | |
AATTCCGATGTTTGGGAGCA+CGG | - | chr3_4:65044357-65044376 | None:intergenic | 45.0% | |
! | TCATATGGGGTTGGGCATTT+TGG | + | chr3_4:65044565-65044584 | Msa0514370:intron | 45.0% |
CAAATGTCTGGCATCATTGC+AGG | - | chr3_4:65044781-65044800 | None:intergenic | 45.0% | |
TTCTGCTCATCAGATGTCCA+TGG | + | chr3_4:65044841-65044860 | Msa0514370:intron | 45.0% | |
ACGGATGCATTGGAAAAGGA+AGG | + | chr3_4:65045546-65045565 | Msa0514370:intron | 45.0% | |
TCAAACAATCCCCTCCACAA+AGG | - | chr3_4:65045685-65045704 | None:intergenic | 45.0% | |
TGTGGAGGGGATTGTTTGAT+TGG | + | chr3_4:65045686-65045705 | Msa0514370:intron | 45.0% | |
AACTTGGATGTGCGTTAGGT+GGG | - | chr3_4:65045994-65046013 | None:intergenic | 45.0% | |
AAACTTGGATGTGCGTTAGG+TGG | - | chr3_4:65045995-65046014 | None:intergenic | 45.0% | |
CACAAACTTGGATGTGCGTT+AGG | - | chr3_4:65045998-65046017 | None:intergenic | 45.0% | |
! | GCAGCAGTCTTTTGCCATTA+TGG | - | chr3_4:65046178-65046197 | None:intergenic | 45.0% |
! | TTGCACCAAATACTGACTGG+TGG | - | chr3_4:65046213-65046232 | None:intergenic | 45.0% |
GAAGGTGATGAGAATAGTGG+AGG | + | chr3_4:65046666-65046685 | Msa0514370:intron | 45.0% | |
CTACTTCCTGTTCTGTTGCT+TGG | + | chr3_4:65046790-65046809 | Msa0514370:intron | 45.0% | |
! | TTCCTGTTCTGTTGCTTGGA+TGG | + | chr3_4:65046794-65046813 | Msa0514370:intron | 45.0% |
TTCCATCCAAGCAACAGAAC+AGG | - | chr3_4:65046799-65046818 | None:intergenic | 45.0% | |
CTGGAGCGGAATTATCTAGA+AGG | + | chr3_4:65046852-65046871 | Msa0514370:CDS | 45.0% | |
CGTGTCAAGGCTAATAGCAA+TGG | + | chr3_4:65046899-65046918 | Msa0514370:CDS | 45.0% | |
TGGTAACTCAGCTCATCTTC+TGG | + | chr3_4:65046925-65046944 | Msa0514370:CDS | 45.0% | |
GGTAACTCAGCTCATCTTCT+GGG | + | chr3_4:65046926-65046945 | Msa0514370:CDS | 45.0% | |
ATGGTCTACTTTGCGAGAAC+AGG | + | chr3_4:65047126-65047145 | Msa0514370:intron | 45.0% | |
ATGGATGCCATAGCAAGACT+TGG | + | chr3_4:65047163-65047182 | Msa0514370:CDS | 45.0% | |
AACACTGCCAAGTCTTGCTA+TGG | - | chr3_4:65047173-65047192 | None:intergenic | 45.0% | |
GATTATGATGGCTGAGGACA+TGG | + | chr3_4:65047219-65047238 | Msa0514370:CDS | 45.0% | |
GACATGGGAACCTCAGAAAA+TGG | + | chr3_4:65047235-65047254 | Msa0514370:CDS | 45.0% | |
! | AGGGACACTTTTCGTGTAGT+CGG | + | chr3_4:65047372-65047391 | Msa0514370:three_prime_UTR | 45.0% |
TGACCCATTTGCGATGTTTG+TGG | + | chr3_4:65047410-65047429 | Msa0514370:three_prime_UTR | 45.0% | |
AGGCCACAAACATCGCAAAT+GGG | - | chr3_4:65047416-65047435 | None:intergenic | 45.0% | |
TAGGCCACAAACATCGCAAA+TGG | - | chr3_4:65047417-65047436 | None:intergenic | 45.0% | |
GCTGAACCCTTCAAGAATGT+AGG | - | chr3_4:65047450-65047469 | None:intergenic | 45.0% | |
CTTGAAGGGTTCAGCATACA+TGG | + | chr3_4:65047455-65047474 | Msa0514370:three_prime_UTR | 45.0% | |
! | AGCAAGGGTATATTTGTCGG+AGG | + | chr3_4:65047480-65047499 | Msa0514370:three_prime_UTR | 45.0% |
!! | ATGTTAAATAATTATATAAA+TGG | + | chr3_4:65044719-65044738 | Msa0514370:intron | 5.0% |
TGAAGATTGACCGCCGAACA+TGG | - | chr3_4:65042761-65042780 | None:intergenic | 50.0% | |
! | AGTGCCGAATGCTGAAGATG+GGG | - | chr3_4:65042800-65042819 | None:intergenic | 50.0% |
!! | GAGTGCCGAATGCTGAAGAT+GGG | - | chr3_4:65042801-65042820 | None:intergenic | 50.0% |
GCATTCGGCACTCCAACTTT+CGG | + | chr3_4:65042808-65042827 | Msa0514370:CDS | 50.0% | |
CCAAAAGCGGGAGTTGAAGA+AGG | - | chr3_4:65042880-65042899 | None:intergenic | 50.0% | |
! | CCTTCTTCAACTCCCGCTTT+TGG | + | chr3_4:65042877-65042896 | Msa0514370:CDS | 50.0% |
GCTTCTTCTACACCCGCTTT+CGG | + | chr3_4:65042901-65042920 | Msa0514370:CDS | 50.0% | |
! | CAGAGAACGGTGTTGAGAAG+AGG | - | chr3_4:65042939-65042958 | None:intergenic | 50.0% |
TGTTGCTGCTGCTGTTGTTG+GGG | - | chr3_4:65042973-65042992 | None:intergenic | 50.0% | |
GTTGTTGCTGCTGCTGTTGT+TGG | - | chr3_4:65042975-65042994 | None:intergenic | 50.0% | |
TTTGGAAACGGCGAAGGTTG+CGG | - | chr3_4:65043060-65043079 | None:intergenic | 50.0% | |
TCCGCTAGTGAGAATGGAAC+TGG | - | chr3_4:65043117-65043136 | None:intergenic | 50.0% | |
TCACGATCCGCTAGTGAGAA+TGG | - | chr3_4:65043123-65043142 | None:intergenic | 50.0% | |
CAGGCTTCACCCTAAACTGT+GGG | - | chr3_4:65043942-65043961 | None:intergenic | 50.0% | |
ATCATGTGGGCGGAAGCTAT+GGG | + | chr3_4:65044075-65044094 | Msa0514370:CDS | 50.0% | |
GAAGCTATGGGGAAGCTTGA+GGG | + | chr3_4:65044087-65044106 | Msa0514370:CDS | 50.0% | |
TATGGGGAAGCTTGAGGGTA+TGG | + | chr3_4:65044092-65044111 | Msa0514370:CDS | 50.0% | |
GGATCTTTCCCAACGCCTTA+AGG | + | chr3_4:65044164-65044183 | Msa0514370:CDS | 50.0% | |
TCTTCCGTGCTCCCAAACAT+CGG | + | chr3_4:65044350-65044369 | Msa0514370:intron | 50.0% | |
CATGGAAGCTCAGTTACACC+AGG | - | chr3_4:65044630-65044649 | None:intergenic | 50.0% | |
TTAGCAGTTCCCGTGTGTCT+AGG | - | chr3_4:65045015-65045034 | None:intergenic | 50.0% | |
! | AAAGGGGGCATGGCATTAAC+AGG | - | chr3_4:65045402-65045421 | None:intergenic | 50.0% |
TGTGGAAATGAAAGGGGGCA+TGG | - | chr3_4:65045412-65045431 | None:intergenic | 50.0% | |
GATCGGCGTCTAATCCTTTG+TGG | + | chr3_4:65045668-65045687 | Msa0514370:intron | 50.0% | |
GGCGTCTAATCCTTTGTGGA+GGG | + | chr3_4:65045672-65045691 | Msa0514370:intron | 50.0% | |
GCGTCTAATCCTTTGTGGAG+GGG | + | chr3_4:65045673-65045692 | Msa0514370:intron | 50.0% | |
GAGTTAGCAGCCGCAAAGAT+TGG | + | chr3_4:65045714-65045733 | Msa0514370:intron | 50.0% | |
! | GCATGTGTTTGGGATCATGG+TGG | + | chr3_4:65045964-65045983 | Msa0514370:intron | 50.0% |
TTCTTGGGAGAGCAGGAGAA+AGG | - | chr3_4:65046400-65046419 | None:intergenic | 50.0% | |
! | GATGAGAATAGTGGAGGCGT+TGG | + | chr3_4:65046672-65046691 | Msa0514370:CDS | 50.0% |
!! | AGAATAGTGGAGGCGTTGGA+GGG | + | chr3_4:65046676-65046695 | Msa0514370:CDS | 50.0% |
TCAGCTGAAAGGATCTGGAG+CGG | + | chr3_4:65046838-65046857 | Msa0514370:intron | 50.0% | |
GGTAGAATCTTACCTCCTGC+AGG | - | chr3_4:65046985-65047004 | None:intergenic | 50.0% | |
! | ACAGGTATTGCAGCAGCAGA+TGG | + | chr3_4:65047144-65047163 | Msa0514370:intron | 50.0% |
! | GACACTTTTCGTGTAGTCGG+CGG | + | chr3_4:65047375-65047394 | Msa0514370:three_prime_UTR | 50.0% |
AGATTGACCGCCGAACATGG+TGG | - | chr3_4:65042758-65042777 | None:intergenic | 55.0% | |
TGAAGATGGGGTCCCGAAGA+GGG | - | chr3_4:65042788-65042807 | None:intergenic | 55.0% | |
GGGACCCCATCTTCAGCATT+CGG | + | chr3_4:65042793-65042812 | Msa0514370:CDS | 55.0% | |
!! | GGAGTGCCGAATGCTGAAGA+TGG | - | chr3_4:65042802-65042821 | None:intergenic | 55.0% |
!! | AAGAAGGGGTACCGAAGCCT+GGG | - | chr3_4:65042864-65042883 | None:intergenic | 55.0% |
TCTTCTACACCCGCTTTCGG+TGG | + | chr3_4:65042904-65042923 | Msa0514370:CDS | 55.0% | |
GAAGAACCACCACCGAAAGC+GGG | - | chr3_4:65042916-65042935 | None:intergenic | 55.0% | |
GGAAGAACCACCACCGAAAG+CGG | - | chr3_4:65042917-65042936 | None:intergenic | 55.0% | |
GCAGGCTTCACCCTAAACTG+TGG | - | chr3_4:65043943-65043962 | None:intergenic | 55.0% | |
! | CAGTTTAGGGTGAAGCCTGC+TGG | + | chr3_4:65043943-65043962 | Msa0514370:CDS | 55.0% |
GATCATGTGGGCGGAAGCTA+TGG | + | chr3_4:65044074-65044093 | Msa0514370:intron | 55.0% | |
TCATGTGGGCGGAAGCTATG+GGG | + | chr3_4:65044076-65044095 | Msa0514370:CDS | 55.0% | |
GGAAGCTATGGGGAAGCTTG+AGG | + | chr3_4:65044086-65044105 | Msa0514370:CDS | 55.0% | |
! | GATGTTTGGGAGCACGGAAG+AGG | - | chr3_4:65044351-65044370 | None:intergenic | 55.0% |
! | GCGTCGGTAACCTAGACACA+CGG | + | chr3_4:65045002-65045021 | Msa0514370:intron | 55.0% |
CGTCGGTAACCTAGACACAC+GGG | + | chr3_4:65045003-65045022 | Msa0514370:intron | 55.0% | |
CGGCGTCTAATCCTTTGTGG+AGG | + | chr3_4:65045671-65045690 | Msa0514370:intron | 55.0% | |
!! | GAGAATAGTGGAGGCGTTGG+AGG | + | chr3_4:65046675-65046694 | Msa0514370:CDS | 55.0% |
ACTCGGCGTATCTCGTGTCA+AGG | + | chr3_4:65046886-65046905 | Msa0514370:CDS | 55.0% | |
TCAAAGTCTGGCTGACCTGC+AGG | + | chr3_4:65046967-65046986 | Msa0514370:CDS | 55.0% | |
!! | GTGTTCTGAAGCGAGACGCA+CGG | + | chr3_4:65047188-65047207 | Msa0514370:CDS | 55.0% |
!! | TGTTCTGAAGCGAGACGCAC+GGG | + | chr3_4:65047189-65047208 | Msa0514370:CDS | 55.0% |
ACGCCGCACACCACCATGTT+CGG | + | chr3_4:65042745-65042764 | Msa0514370:exon | 60.0% | |
CTGAAGATGGGGTCCCGAAG+AGG | - | chr3_4:65042789-65042808 | None:intergenic | 60.0% | |
ACACCAGCTTTCAGCACCCC+AGG | + | chr3_4:65042844-65042863 | Msa0514370:CDS | 60.0% | |
!! | AAGCCTGGGGTGCTGAAAGC+TGG | - | chr3_4:65042850-65042869 | None:intergenic | 60.0% |
GCTTTCAGCACCCCAGGCTT+CGG | + | chr3_4:65042850-65042869 | Msa0514370:CDS | 60.0% | |
!! | AGAAGGGGTACCGAAGCCTG+GGG | - | chr3_4:65042863-65042882 | None:intergenic | 60.0% |
!! | GAAGAAGGGGTACCGAAGCC+TGG | - | chr3_4:65042865-65042884 | None:intergenic | 60.0% |
TCTACACCCGCTTTCGGTGG+TGG | + | chr3_4:65042907-65042926 | Msa0514370:CDS | 60.0% | |
!! | GTGGAGGCGTTGGAGGGAAA+AGG | + | chr3_4:65046682-65046701 | Msa0514370:CDS | 60.0% |
AAGTCTGGCTGACCTGCAGG+AGG | + | chr3_4:65046970-65046989 | Msa0514370:CDS | 60.0% | |
GAAGCGAGACGCACGGGATA+TGG | + | chr3_4:65047195-65047214 | Msa0514370:CDS | 60.0% | |
! | CCGCCGAACATGGTGGTGTG+CGG | - | chr3_4:65042751-65042770 | None:intergenic | 65.0% |
CCGCACACCACCATGTTCGG+CGG | + | chr3_4:65042748-65042767 | Msa0514370:exon | 65.0% | |
AACGGCGAAGGTTGCGGCGC+CGG | - | chr3_4:65043054-65043073 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_4 | gene | 65042622 | 65047572 | 65042622 | ID=Msa0514370;Name=Msa0514370 |
chr3_4 | mRNA | 65042622 | 65047572 | 65042622 | ID=Msa0514370-mRNA-1;Parent=Msa0514370;Name=Msa0514370-mRNA-1;_AED=0.09;_eAED=0.09;_QI=138|1|1|1|1|1|9|302|380 |
chr3_4 | exon | 65042622 | 65043149 | 65042622 | ID=Msa0514370-mRNA-1:exon:16458;Parent=Msa0514370-mRNA-1 |
chr3_4 | exon | 65043239 | 65043292 | 65043239 | ID=Msa0514370-mRNA-1:exon:16459;Parent=Msa0514370-mRNA-1 |
chr3_4 | exon | 65043916 | 65043975 | 65043916 | ID=Msa0514370-mRNA-1:exon:16460;Parent=Msa0514370-mRNA-1 |
chr3_4 | exon | 65044075 | 65044185 | 65044075 | ID=Msa0514370-mRNA-1:exon:16461;Parent=Msa0514370-mRNA-1 |
chr3_4 | exon | 65046325 | 65046390 | 65046325 | ID=Msa0514370-mRNA-1:exon:16462;Parent=Msa0514370-mRNA-1 |
chr3_4 | exon | 65046486 | 65046572 | 65046486 | ID=Msa0514370-mRNA-1:exon:16463;Parent=Msa0514370-mRNA-1 |
chr3_4 | exon | 65046670 | 65046771 | 65046670 | ID=Msa0514370-mRNA-1:exon:16464;Parent=Msa0514370-mRNA-1 |
chr3_4 | exon | 65046842 | 65046991 | 65046842 | ID=Msa0514370-mRNA-1:exon:16465;Parent=Msa0514370-mRNA-1 |
chr3_4 | exon | 65047148 | 65047572 | 65047148 | ID=Msa0514370-mRNA-1:exon:16466;Parent=Msa0514370-mRNA-1 |
chr3_4 | five_prime_UTR | 65042622 | 65042759 | 65042622 | ID=Msa0514370-mRNA-1:five_prime_utr;Parent=Msa0514370-mRNA-1 |
chr3_4 | CDS | 65042760 | 65043149 | 65042760 | ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1 |
chr3_4 | CDS | 65043239 | 65043292 | 65043239 | ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1 |
chr3_4 | CDS | 65043916 | 65043975 | 65043916 | ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1 |
chr3_4 | CDS | 65044075 | 65044185 | 65044075 | ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1 |
chr3_4 | CDS | 65046325 | 65046390 | 65046325 | ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1 |
chr3_4 | CDS | 65046486 | 65046572 | 65046486 | ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1 |
chr3_4 | CDS | 65046670 | 65046771 | 65046670 | ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1 |
chr3_4 | CDS | 65046842 | 65046991 | 65046842 | ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1 |
chr3_4 | CDS | 65047148 | 65047270 | 65047148 | ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1 |
chr3_4 | three_prime_UTR | 65047271 | 65047572 | 65047271 | ID=Msa0514370-mRNA-1:three_prime_utr;Parent=Msa0514370-mRNA-1 |
Gene Sequence |
Protein sequence |