AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0514370


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514370 MtrunA17_Chr3g0122701 99.474 380 2 0 1 380 1 380 0.0 767
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0514370 AT1G24310.1 67.560 373 106 4 10 370 1 370 1.40e-164 466

Find 134 sgRNAs with CRISPR-Local

Find 357 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAACCTTAAAAGCGTATT+TGG 0.127759 3_4:-65043276 None:intergenic
TGAGTAGTCAATTGAGAATT+TGG 0.173685 3_4:-65043075 None:intergenic
CTATCACCTTCTACTGGTTT+TGG 0.175988 3_4:+65043012 Msa0514370:CDS
CAGACTTTGATCGTGAATTT+TGG 0.193440 3_4:-65046954 None:intergenic
TGGTAACTCAGCTCATCTTC+TGG 0.215937 3_4:+65046925 Msa0514370:CDS
GTATATTTGTCGGAGGATTT+TGG 0.218217 3_4:+65047487 Msa0514370:three_prime_UTR
TATCTGCTTGAAAATGTCTT+TGG 0.301845 3_4:-65046488 None:intergenic
GAAGCGAGACGCACGGGATA+TGG 0.316915 3_4:+65047195 Msa0514370:CDS
AAAACCTTAAAAGCGTATTT+GGG 0.319798 3_4:-65043275 None:intergenic
CAATCTTCATCTTCCCTCTT+CGG 0.322179 3_4:+65042772 Msa0514370:CDS
TTTGTCCATGTATCATGATT+TGG 0.323361 3_4:+65047325 Msa0514370:three_prime_UTR
AACCCAAAGCAATGTTAAAA+TGG 0.323703 3_4:+65046369 Msa0514370:CDS
GTGTAACAGACCCACAGTTT+AGG 0.324603 3_4:+65043929 Msa0514370:CDS
GTTGTTGCTGCTGCTGTTGT+TGG 0.325620 3_4:-65042972 None:intergenic
GACATGGGAACCTCAGAAAA+TGG 0.331518 3_4:+65047235 Msa0514370:CDS
TTGTTGCTGCTGCTGTTGTT+GGG 0.347224 3_4:-65042971 None:intergenic
GGTAACTCAGCTCATCTTCT+GGG 0.368462 3_4:+65046926 Msa0514370:CDS
CCTTCTTCAACTCCCGCTTT+TGG 0.369276 3_4:+65042877 Msa0514370:CDS
GGATCTTTCCCAACGCCTTA+AGG 0.376166 3_4:+65044164 Msa0514370:CDS
TGTAACAGACCCACAGTTTA+GGG 0.381508 3_4:+65043930 Msa0514370:CDS
GCTTCTTCTACACCCGCTTT+CGG 0.390655 3_4:+65042901 Msa0514370:CDS
GAATGTAGGAAGATTCAAAT+AGG 0.392916 3_4:-65047433 None:intergenic
AATCTTCATCTTCCCTCTTC+GGG 0.396928 3_4:+65042773 Msa0514370:CDS
CTTGAAGGGTTCAGCATACA+TGG 0.400271 3_4:+65047455 Msa0514370:three_prime_UTR
AAGGCTAATAGCAATGGATT+TGG 0.408263 3_4:+65046905 Msa0514370:CDS
GATCATGTGGGCGGAAGCTA+TGG 0.409669 3_4:+65044074 Msa0514370:intron
CTGGAGCGGAATTATCTAGA+AGG 0.413522 3_4:+65046852 Msa0514370:CDS
GTGCTGATAGAGAACGTCTT+TGG 0.413609 3_4:+65044118 Msa0514370:CDS
AAAATTTACCTTAAGGCGTT+GGG 0.422159 3_4:-65044172 None:intergenic
AACGGCGAAGGTTGCGGCGC+CGG 0.423275 3_4:-65043051 None:intergenic
GCATTCGGCACTCCAACTTT+CGG 0.423472 3_4:+65042808 Msa0514370:CDS
GAAGAAGGGGTACCGAAGCC+TGG 0.427369 3_4:-65042862 None:intergenic
TAGGCCACAAACATCGCAAA+TGG 0.427930 3_4:-65047414 None:intergenic
GAATCTTCCTACATTCTTGA+AGG 0.428611 3_4:+65047440 Msa0514370:three_prime_UTR
TTCTCAATTGACTACTCAAA+TGG 0.443096 3_4:+65043080 Msa0514370:CDS
TGCCGTATTCCATTAACAAA+AGG 0.445652 3_4:+65046706 Msa0514370:CDS
GCTTTCAGCACCCCAGGCTT+CGG 0.445658 3_4:+65042850 Msa0514370:CDS
TCTACACCCGCTTTCGGTGG+TGG 0.448947 3_4:+65042907 Msa0514370:CDS
GGGACCCCATCTTCAGCATT+CGG 0.452689 3_4:+65042793 Msa0514370:CDS
TGAAACCCAAAACCAGTAGA+AGG 0.453433 3_4:-65043018 None:intergenic
GAGAATAGTGGAGGCGTTGG+AGG 0.455797 3_4:+65046675 Msa0514370:CDS
TGACCCATTTGCGATGTTTG+TGG 0.457218 3_4:+65047410 Msa0514370:three_prime_UTR
TTCAAGCAGATACTCTTCCT+TGG 0.459845 3_4:+65046499 Msa0514370:CDS
CTTTGGCCACAACAAGTTCA+AGG 0.461110 3_4:+65044135 Msa0514370:CDS
ACGCCGCACACCACCATGTT+CGG 0.462481 3_4:+65042745 Msa0514370:exon
AAGCCTGGGGTGCTGAAAGC+TGG 0.465129 3_4:-65042847 None:intergenic
CAAAATTCACGATCAAAGTC+TGG 0.467189 3_4:+65046955 Msa0514370:CDS
TCCGCTAGTGAGAATGGAAC+TGG 0.468365 3_4:-65043114 None:intergenic
TATGGGGAAGCTTGAGGGTA+TGG 0.469058 3_4:+65044092 Msa0514370:CDS
CAGTTTAGGGTGAAGCCTGC+TGG 0.475949 3_4:+65043943 Msa0514370:CDS
TTTGGAAACGGCGAAGGTTG+CGG 0.476917 3_4:-65043057 None:intergenic
TCAAAGTCTGGCTGACCTGC+AGG 0.480292 3_4:+65046967 Msa0514370:CDS
GTCAATTGAGAATTTGGAAA+CGG 0.480882 3_4:-65043069 None:intergenic
GATGAGAATAGTGGAGGCGT+TGG 0.481773 3_4:+65046672 Msa0514370:CDS
TCACGATCCGCTAGTGAGAA+TGG 0.483587 3_4:-65043120 None:intergenic
GCCGTATTCCATTAACAAAA+GGG 0.485365 3_4:+65046707 Msa0514370:CDS
TTTCAACTATCACCTTCTAC+TGG 0.487130 3_4:+65043006 Msa0514370:CDS
GAAGCTATGGGGAAGCTTGA+GGG 0.490154 3_4:+65044087 Msa0514370:CDS
CAGAGACAATGACTTCATCT+TGG 0.494474 3_4:-65046327 None:intergenic
GTTAGCAAGGGTATATTTGT+CGG 0.495850 3_4:+65047477 Msa0514370:three_prime_UTR
AAGAAGGGGTACCGAAGCCT+GGG 0.499083 3_4:-65042861 None:intergenic
TTAAAACCTTGAACTTGTTG+TGG 0.500336 3_4:-65044141 None:intergenic
GTGGAGGCGTTGGAGGGAAA+AGG 0.503729 3_4:+65046682 Msa0514370:CDS
GCGCTTAAATTTAGCAGTCT+AGG 0.504211 3_4:-65042650 None:intergenic
CCAAAAGCGGGAGTTGAAGA+AGG 0.506648 3_4:-65042877 None:intergenic
ACACCAGCTTTCAGCACCCC+AGG 0.510458 3_4:+65042844 Msa0514370:CDS
TTCTACCTGTCTAGTTATTG+TGG 0.512168 3_4:-65046755 None:intergenic
TGTTGCTGCTGCTGTTGTTG+GGG 0.517011 3_4:-65042970 None:intergenic
AGAGAACGGTGTTGAGAAGA+GGG 0.519091 3_4:-65042935 None:intergenic
GATTATGATGGCTGAGGACA+TGG 0.520825 3_4:+65047219 Msa0514370:CDS
TGTTTCAGTCTTTGAATCCA+AGG 0.521920 3_4:-65046516 None:intergenic
ACAGGTATTGCAGCAGCAGA+TGG 0.527438 3_4:+65047144 Msa0514370:intron
GATTCTTATAAAGAAGATGC+TGG 0.529366 3_4:+65043248 Msa0514370:CDS
TGAGAATTTGGAAACGGCGA+AGG 0.531345 3_4:-65043063 None:intergenic
AATCTTCCTACATTCTTGAA+GGG 0.531796 3_4:+65047441 Msa0514370:three_prime_UTR
GGTAGAATCTTACCTCCTGC+AGG 0.538215 3_4:-65046982 None:intergenic
GGAGTGCCGAATGCTGAAGA+TGG 0.538730 3_4:-65042799 None:intergenic
ACTAGCCACAATAACTAGAC+AGG 0.539256 3_4:+65046750 Msa0514370:CDS
ATCATGTGGGCGGAAGCTAT+GGG 0.541380 3_4:+65044075 Msa0514370:CDS
CGTGTCAAGGCTAATAGCAA+TGG 0.543360 3_4:+65046899 Msa0514370:CDS
CTGAAGATGGGGTCCCGAAG+AGG 0.544355 3_4:-65042786 None:intergenic
CAGAGAACGGTGTTGAGAAG+AGG 0.544554 3_4:-65042936 None:intergenic
GGAAGCTATGGGGAAGCTTG+AGG 0.544713 3_4:+65044086 Msa0514370:CDS
GTTTATGTTGCTAGATCATG+TGG 0.544933 3_4:+65044061 Msa0514370:intron
CTGAAAGCTGGTGTTGAAGA+AGG 0.547067 3_4:-65042835 None:intergenic
AGGCCACAAACATCGCAAAT+GGG 0.549395 3_4:-65047413 None:intergenic
TATTACCAAATCATGATACA+TGG 0.551515 3_4:-65047330 None:intergenic
AGAATAGTGGAGGCGTTGGA+GGG 0.552709 3_4:+65046676 Msa0514370:CDS
GAGTGCCGAATGCTGAAGAT+GGG 0.561315 3_4:-65042798 None:intergenic
TGTTCTGAAGCGAGACGCAC+GGG 0.561337 3_4:+65047189 Msa0514370:CDS
AACACTGCCAAGTCTTGCTA+TGG 0.563127 3_4:-65047170 None:intergenic
GAAGAACCACCACCGAAAGC+GGG 0.563527 3_4:-65042913 None:intergenic
GAAGAAGGAGTACCGAAAGT+TGG 0.564163 3_4:-65042820 None:intergenic
GTGTTCTGAAGCGAGACGCA+CGG 0.568554 3_4:+65047188 Msa0514370:CDS
GGAAGAACCACCACCGAAAG+CGG 0.569387 3_4:-65042914 None:intergenic
TCCAGTTCCATTCTCACTAG+CGG 0.572002 3_4:+65043113 Msa0514370:CDS
TGAAGATGGGGTCCCGAAGA+GGG 0.572735 3_4:-65042785 None:intergenic
TTCAGCATACATGGTTAGCA+AGG 0.574227 3_4:+65047464 Msa0514370:three_prime_UTR
GCTGAACCCTTCAAGAATGT+AGG 0.576573 3_4:-65047447 None:intergenic
TGAAGATTGACCGCCGAACA+TGG 0.577493 3_4:-65042758 None:intergenic
ATTGAAGGTGATGAGAATAG+TGG 0.583298 3_4:+65046663 Msa0514370:intron
CAAAAGCGGGAGTTGAAGAA+GGG 0.585231 3_4:-65042876 None:intergenic
GTAGAAGAAGCACCAAAAGC+GGG 0.586298 3_4:-65042889 None:intergenic
TCTTCTACACCCGCTTTCGG+TGG 0.586639 3_4:+65042904 Msa0514370:CDS
ACGGGATATGGAGATTATGA+TGG 0.590444 3_4:+65047207 Msa0514370:CDS
TATGGAGATTATGATGGCTG+AGG 0.590797 3_4:+65047213 Msa0514370:CDS
ATGGATGCCATAGCAAGACT+TGG 0.599180 3_4:+65047163 Msa0514370:CDS
AGCAAGGGTATATTTGTCGG+AGG 0.606225 3_4:+65047480 Msa0514370:three_prime_UTR
ATGGACAAATTACAAACCAA+AGG 0.608304 3_4:-65047311 None:intergenic
CAGGCTTCACCCTAAACTGT+GGG 0.612681 3_4:-65043939 None:intergenic
ATTATGATGGCTGAGGACAT+GGG 0.618742 3_4:+65047220 Msa0514370:CDS
CTTACATCTGAAACACCAGC+AGG 0.625885 3_4:-65043958 None:intergenic
CCGTATTCCATTAACAAAAG+GGG 0.630334 3_4:+65046708 Msa0514370:CDS
AAACCTTAAAAGCGTATTTG+GGG 0.630724 3_4:-65043274 None:intergenic
TGGAGCGGAATTATCTAGAA+GGG 0.631061 3_4:+65046853 Msa0514370:CDS
GGTTGTTGTTGAGCAGAGAA+CGG 0.632380 3_4:-65042949 None:intergenic
TCAGCTGAAAGGATCTGGAG+CGG 0.638114 3_4:+65046838 Msa0514370:intron
CCGCCGAACATGGTGGTGTG+CGG 0.642470 3_4:-65042748 None:intergenic
TGTAGAAGAAGCACCAAAAG+CGG 0.643383 3_4:-65042890 None:intergenic
GCAGGCTTCACCCTAAACTG+TGG 0.646030 3_4:-65043940 None:intergenic
GAAGGTGATGAGAATAGTGG+AGG 0.650075 3_4:+65046666 Msa0514370:intron
ACTCGGCGTATCTCGTGTCA+AGG 0.651033 3_4:+65046886 Msa0514370:CDS
AGAAGGGTACAAAATCTACT+CGG 0.654843 3_4:+65046869 Msa0514370:CDS
TGGGTTTCAGAATTCTACGC+CGG 0.655438 3_4:+65043032 Msa0514370:CDS
CCGCACACCACCATGTTCGG+CGG 0.655972 3_4:+65042748 Msa0514370:exon
AAGTCTGGCTGACCTGCAGG+AGG 0.657558 3_4:+65046970 Msa0514370:CDS
TCAGCATACATGGTTAGCAA+GGG 0.662415 3_4:+65047465 Msa0514370:three_prime_UTR
TCATGTGGGCGGAAGCTATG+GGG 0.675093 3_4:+65044076 Msa0514370:CDS
TTTATGTTGCTAGATCATGT+GGG 0.694092 3_4:+65044062 Msa0514370:intron
ATGTTGCTAGATCATGTGGG+CGG 0.703435 3_4:+65044065 Msa0514370:intron
AAAAGCGGGAGTTGAAGAAG+GGG 0.703806 3_4:-65042875 None:intergenic
AGAAGGGGTACCGAAGCCTG+GGG 0.706896 3_4:-65042860 None:intergenic
AGTGCCGAATGCTGAAGATG+GGG 0.747720 3_4:-65042797 None:intergenic
AGATTGACCGCCGAACATGG+TGG 0.846340 3_4:-65042755 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTTCATTTAAAATTTATT+TGG + chr3_4:65043311-65043330 Msa0514370:intron 10.0%
!!! TAAAATTTATTTGGAATTAT+AGG + chr3_4:65043320-65043339 Msa0514370:intron 10.0%
!!! AAAATTTATTTGGAATTATA+GGG + chr3_4:65043321-65043340 Msa0514370:intron 10.0%
!!! AGTTTAATTTTTAGTAAAAT+AGG + chr3_4:65044599-65044618 Msa0514370:intron 10.0%
!!! GTTTAATTTTTAGTAAAATA+GGG + chr3_4:65044600-65044619 Msa0514370:intron 10.0%
!!! TTTAATTTTTAGTAAAATAG+GGG + chr3_4:65044601-65044620 Msa0514370:intron 10.0%
!!! AAACTAGTTGATTAAATTTT+TGG + chr3_4:65043552-65043571 Msa0514370:intron 15.0%
!!! AGCTTATAACTTATTTTTAT+TGG - chr3_4:65043752-65043771 None:intergenic 15.0%
!!! TTTTTTATAGTGTTTAAAAC+AGG + chr3_4:65044254-65044273 Msa0514370:intron 15.0%
!!! TTTTTATAGTGTTTAAAACA+GGG + chr3_4:65044255-65044274 Msa0514370:intron 15.0%
!!! AATATTTGGAAATTTTATGA+TGG - chr3_4:65044395-65044414 None:intergenic 15.0%
!! ATCATAAAATTTCCAAATAT+TGG + chr3_4:65044394-65044413 Msa0514370:intron 15.0%
!! TGTTTATAATAGATTTAGAA+TGG - chr3_4:65044680-65044699 None:intergenic 15.0%
!! ATTTATTCTAACAAGAAAAT+GGG - chr3_4:65045044-65045063 None:intergenic 15.0%
!! TATTTATTCTAACAAGAAAA+TGG - chr3_4:65045045-65045064 None:intergenic 15.0%
!! TTAATTAACAAGTTAAAACA+AGG + chr3_4:65045087-65045106 Msa0514370:intron 15.0%
!! CTAAAACAACTAAAATTAAT+AGG - chr3_4:65045892-65045911 None:intergenic 15.0%
!! TATTGATCTAATACTAAAAT+TGG - chr3_4:65046106-65046125 None:intergenic 15.0%
!!! TTATCTTTGTTTTTCCAATT+AGG + chr3_4:65043217-65043236 Msa0514370:intron 20.0%
!! TTTGGATAAATAGCTTAATT+AGG - chr3_4:65043367-65043386 None:intergenic 20.0%
!!! TTGATTAAATTTTTGGTGTT+TGG + chr3_4:65043559-65043578 Msa0514370:intron 20.0%
!! AGAAAATAAAACGTATTAGA+TGG - chr3_4:65044293-65044312 None:intergenic 20.0%
!!! TTATTTTCTTTACCAATTTG+TGG + chr3_4:65044304-65044323 Msa0514370:intron 20.0%
!! AAAATTTCCAAATATTGGTA+TGG + chr3_4:65044399-65044418 Msa0514370:intron 20.0%
!! ATTATAGCAATGAATTTGAT+AGG + chr3_4:65044484-65044503 Msa0514370:intron 20.0%
!! TATTTAACATCTAAATTGCA+AGG - chr3_4:65044709-65044728 None:intergenic 20.0%
!! AGAAATGTCATGTAATTTAT+AGG - chr3_4:65045610-65045629 None:intergenic 20.0%
!!! ACATTTTAAATGAAGTTGAT+CGG + chr3_4:65045651-65045670 Msa0514370:intron 20.0%
!! TTATTAATATAGCATGTGTT+TGG + chr3_4:65045953-65045972 Msa0514370:intron 20.0%
!! TATTAATATAGCATGTGTTT+GGG + chr3_4:65045954-65045973 Msa0514370:intron 20.0%
!! TATATTGAAATATGCCATAA+TGG + chr3_4:65046161-65046180 Msa0514370:intron 20.0%
!! AATTAGAAACTGTTGAAATA+CGG + chr3_4:65046265-65046284 Msa0514370:intron 20.0%
!! AAAACCTTAAAAGCGTATTT+GGG - chr3_4:65043278-65043297 None:intergenic 25.0%
! ATGATAAATTAGGTTCTGTT+TGG - chr3_4:65043385-65043404 None:intergenic 25.0%
! GAAACAGCTTATGATAAATT+AGG - chr3_4:65043395-65043414 None:intergenic 25.0%
!! AGACAATTTAAGACAGATTA+TGG - chr3_4:65043417-65043436 None:intergenic 25.0%
! AGCAGAAAAAATTTACCTTA+AGG - chr3_4:65044182-65044201 None:intergenic 25.0%
! AAAGTTTAATTCCGATGTTT+GGG - chr3_4:65044364-65044383 None:intergenic 25.0%
! AAAAGTTTAATTCCGATGTT+TGG - chr3_4:65044365-65044384 None:intergenic 25.0%
! AAAACTACCATACCAATATT+TGG - chr3_4:65044409-65044428 None:intergenic 25.0%
! TAATGATAGGTGAAATTGAA+TGG - chr3_4:65044435-65044454 None:intergenic 25.0%
! TAGATATCCAAACAGAAAAT+AGG + chr3_4:65044453-65044472 Msa0514370:intron 25.0%
!! CTTGAATATACGATTTTAGA+AGG + chr3_4:65044532-65044551 Msa0514370:intron 25.0%
!!! TATACGATTTTAGAAGGAAA+TGG + chr3_4:65044538-65044557 Msa0514370:intron 25.0%
! TAAAATCAAGTTCAAATGTC+TGG - chr3_4:65044793-65044812 None:intergenic 25.0%
!! GTTCTATTTTCAAAACAAAC+TGG + chr3_4:65044938-65044957 Msa0514370:intron 25.0%
! TTAAAACAAGGCATAACATA+TGG + chr3_4:65045099-65045118 Msa0514370:intron 25.0%
! TAAAACAAGGCATAACATAT+GGG + chr3_4:65045100-65045119 Msa0514370:intron 25.0%
! TGTGAAAAGTAGAACAAAAT+AGG + chr3_4:65045144-65045163 Msa0514370:intron 25.0%
! GTCAATTCTAAGTAAAATGT+TGG + chr3_4:65045185-65045204 Msa0514370:intron 25.0%
!!! ACTTAAGCTGTTTTTGAAAA+GGG - chr3_4:65045312-65045331 None:intergenic 25.0%
!!! AACTTAAGCTGTTTTTGAAA+AGG - chr3_4:65045313-65045332 None:intergenic 25.0%
!! GAAATATATGCTTTTCTGAA+AGG - chr3_4:65045366-65045385 None:intergenic 25.0%
! ATAATGATGTGGAAATGAAA+GGG - chr3_4:65045419-65045438 None:intergenic 25.0%
!!! TTTTTTCTCAACTTTTGTTG+TGG - chr3_4:65045783-65045802 None:intergenic 25.0%
! AAACGAGAGAAATATGATAT+GGG + chr3_4:65045912-65045931 Msa0514370:intron 25.0%
!!! AATAACCATGCCTTTTAATT+TGG - chr3_4:65045938-65045957 None:intergenic 25.0%
! ATGGGAATAATATATGCTAA+AGG + chr3_4:65046039-65046058 Msa0514370:intron 25.0%
! ATATGCTAAAGGATAAGTTA+AGG + chr3_4:65046050-65046069 Msa0514370:intron 25.0%
! AATATATACAACTCTTCACT+GGG + chr3_4:65046134-65046153 Msa0514370:intron 25.0%
! ATTAGAAACTGTTGAAATAC+GGG + chr3_4:65046266-65046285 Msa0514370:intron 25.0%
!!! TACCATTTTAACATTGCTTT+GGG - chr3_4:65046374-65046393 None:intergenic 25.0%
!!! ATACCATTTTAACATTGCTT+TGG - chr3_4:65046375-65046394 None:intergenic 25.0%
! ATATGATTAGACATAATGAG+GGG - chr3_4:65046637-65046656 None:intergenic 25.0%
! CATATGATTAGACATAATGA+GGG - chr3_4:65046638-65046657 None:intergenic 25.0%
! ACATATGATTAGACATAATG+AGG - chr3_4:65046639-65046658 None:intergenic 25.0%
! TATTACCAAATCATGATACA+TGG - chr3_4:65047333-65047352 None:intergenic 25.0%
! TTCTGAAAGCAAAAAGCAAA+AGG - chr3_4:65042677-65042696 None:intergenic 30.0%
GTCAATTGAGAATTTGGAAA+CGG - chr3_4:65043072-65043091 None:intergenic 30.0%
TGAGTAGTCAATTGAGAATT+TGG - chr3_4:65043078-65043097 None:intergenic 30.0%
TTCTCAATTGACTACTCAAA+TGG + chr3_4:65043080-65043099 Msa0514370:CDS 30.0%
GATTCTTATAAAGAAGATGC+TGG + chr3_4:65043248-65043267 Msa0514370:CDS 30.0%
! AAACCTTAAAAGCGTATTTG+GGG - chr3_4:65043277-65043296 None:intergenic 30.0%
! GAAAACCTTAAAAGCGTATT+TGG - chr3_4:65043279-65043298 None:intergenic 30.0%
TTTAAATGAAGAAGACAGAG+AGG - chr3_4:65043304-65043323 None:intergenic 30.0%
! TATTTGGAATTATAGGGTCA+TGG + chr3_4:65043327-65043346 Msa0514370:intron 30.0%
AATTATAGGGTCATGGATAT+AGG + chr3_4:65043334-65043353 Msa0514370:intron 30.0%
ATTATAGGGTCATGGATATA+GGG + chr3_4:65043335-65043354 Msa0514370:intron 30.0%
GTCTAAGTTACTGTTTGAAT+CGG - chr3_4:65043464-65043483 None:intergenic 30.0%
GCTTATAAGTTAACTTACAG+CGG + chr3_4:65043509-65043528 Msa0514370:intron 30.0%
ATAAGCTTGTGAGAAAATGA+CGG + chr3_4:65043765-65043784 Msa0514370:intron 30.0%
ATCAGCTCATATGACTAAAA+AGG - chr3_4:65043804-65043823 None:intergenic 30.0%
ATGAGAAAACATGAAAGCTA+CGG - chr3_4:65043871-65043890 None:intergenic 30.0%
TTTATGTTGCTAGATCATGT+GGG + chr3_4:65044062-65044081 Msa0514370:intron 30.0%
!! TTAAAACCTTGAACTTGTTG+TGG - chr3_4:65044144-65044163 None:intergenic 30.0%
! ACAACAAGTTCAAGGTTTTA+AGG + chr3_4:65044143-65044162 Msa0514370:CDS 30.0%
! AAAATTTACCTTAAGGCGTT+GGG - chr3_4:65044175-65044194 None:intergenic 30.0%
AAAAATTTACCTTAAGGCGT+TGG - chr3_4:65044176-65044195 None:intergenic 30.0%
TATGTTTGGATTGATTGGAA+GGG + chr3_4:65044206-65044225 Msa0514370:intron 30.0%
! TATAGTGTTTAAAACAGGGT+TGG + chr3_4:65044259-65044278 Msa0514370:intron 30.0%
CTGTTTGGATATCTAATGAT+AGG - chr3_4:65044448-65044467 None:intergenic 30.0%
GAATTTGATAGGTTAACTAC+TGG + chr3_4:65044495-65044514 Msa0514370:intron 30.0%
AAGGAAATGGATGTTCATAT+GGG + chr3_4:65044551-65044570 Msa0514370:intron 30.0%
AACATCTAAATTGCAAGGTA+AGG - chr3_4:65044704-65044723 None:intergenic 30.0%
TTTCAAAACAAACTGGTGAT+AGG + chr3_4:65044945-65044964 Msa0514370:intron 30.0%
ATATATATATAGACGTGCGT+CGG + chr3_4:65044986-65045005 Msa0514370:intron 30.0%
!!! TATGGGTTTTGTTTCATGTT+TGG + chr3_4:65045117-65045136 Msa0514370:intron 30.0%
AAAAAATGAAACTGAACAGC+TGG - chr3_4:65045232-65045251 None:intergenic 30.0%
! AAATGAAAAAGGTGTAGTGT+AGG - chr3_4:65045272-65045291 None:intergenic 30.0%
!! TACACTACACCTTTTTCATT+TGG + chr3_4:65045271-65045290 Msa0514370:intron 30.0%
!! AGTTTTGGTCCAAATGAAAA+AGG - chr3_4:65045283-65045302 None:intergenic 30.0%
!! TCAAAAACAGCTTAAGTTGA+TGG + chr3_4:65045315-65045334 Msa0514370:intron 30.0%
TAATGATGTGGAAATGAAAG+GGG - chr3_4:65045418-65045437 None:intergenic 30.0%
CATAATGATGTGGAAATGAA+AGG - chr3_4:65045420-65045439 None:intergenic 30.0%
TGATTGATTGCATAATGATG+TGG - chr3_4:65045430-65045449 None:intergenic 30.0%
! TGTAAATCCCCATTTTGTAA+CGG + chr3_4:65045527-65045546 Msa0514370:intron 30.0%
! TGACATTTGATGATAGAAAG+AGG + chr3_4:65045817-65045836 Msa0514370:intron 30.0%
! ATTTGATGATAGAAAGAGGT+AGG + chr3_4:65045821-65045840 Msa0514370:intron 30.0%
GAAACGAGAGAAATATGATA+TGG + chr3_4:65045911-65045930 Msa0514370:intron 30.0%
ATGATATGGGCCAAATTAAA+AGG + chr3_4:65045925-65045944 Msa0514370:intron 30.0%
CATATATTATTCCCATTCGT+AGG - chr3_4:65046035-65046054 None:intergenic 30.0%
GAATATATACAACTCTTCAC+TGG + chr3_4:65046133-65046152 Msa0514370:intron 30.0%
TGAGTAAAAATGTGTCATCA+AGG - chr3_4:65046292-65046311 None:intergenic 30.0%
AACCCAAAGCAATGTTAAAA+TGG + chr3_4:65046369-65046388 Msa0514370:CDS 30.0%
GATAGGTTAGCATAAAAAAC+CGG - chr3_4:65046439-65046458 None:intergenic 30.0%
TATCTGCTTGAAAATGTCTT+TGG - chr3_4:65046491-65046510 None:intergenic 30.0%
!! AGCAACGTATTTTAAGAGTA+TGG + chr3_4:65046556-65046575 Msa0514370:intron 30.0%
TAATCATATGTCGTGATTGA+AGG + chr3_4:65046648-65046667 Msa0514370:intron 30.0%
! AAAATGTCTTTTCAGCTGAA+AGG + chr3_4:65046827-65046846 Msa0514370:intron 30.0%
TAAACCTCATATTGCCATAT+TGG - chr3_4:65047006-65047025 None:intergenic 30.0%
GAAGAACTCAATGTTAATGA+TGG + chr3_4:65047107-65047126 Msa0514370:intron 30.0%
! CATTAAATGTCCATTTTCTG+AGG - chr3_4:65047248-65047267 None:intergenic 30.0%
! TCTTACTTCGTATTTTCCTT+TGG + chr3_4:65047295-65047314 Msa0514370:three_prime_UTR 30.0%
ATGGACAAATTACAAACCAA+AGG - chr3_4:65047314-65047333 None:intergenic 30.0%
TTTGTCCATGTATCATGATT+TGG + chr3_4:65047325-65047344 Msa0514370:three_prime_UTR 30.0%
GAATGTAGGAAGATTCAAAT+AGG - chr3_4:65047436-65047455 None:intergenic 30.0%
AATCTTCCTACATTCTTGAA+GGG + chr3_4:65047441-65047460 Msa0514370:three_prime_UTR 30.0%
!! AGGATTTTGGAAAAAAGTGA+TGG + chr3_4:65047500-65047519 Msa0514370:three_prime_UTR 30.0%
TTTCAACTATCACCTTCTAC+TGG + chr3_4:65043006-65043025 Msa0514370:CDS 35.0%
!!! TATCACCTTCTACTGGTTTT+GGG + chr3_4:65043013-65043032 Msa0514370:CDS 35.0%
AGAATCAAGAATCGCCTAAT+TGG - chr3_4:65043234-65043253 None:intergenic 35.0%
! AAACCCCAAATACGCTTTTA+AGG + chr3_4:65043271-65043290 Msa0514370:CDS 35.0%
AGAAAATGACGGTTACCAAA+CGG + chr3_4:65043776-65043795 Msa0514370:intron 35.0%
ATGACTAAAAAGGATCCGTT+TGG - chr3_4:65043794-65043813 None:intergenic 35.0%
! GCTTTCATGTTTTCTCATGT+TGG + chr3_4:65043873-65043892 Msa0514370:intron 35.0%
! TTTTTCTTATGTCATGCCAC+TGG + chr3_4:65044022-65044041 Msa0514370:intron 35.0%
GTTTATGTTGCTAGATCATG+TGG + chr3_4:65044061-65044080 Msa0514370:intron 35.0%
! TTTTTCTGCTCCACTATGTT+TGG + chr3_4:65044192-65044211 Msa0514370:intron 35.0%
TCCACTATGTTTGGATTGAT+TGG + chr3_4:65044201-65044220 Msa0514370:intron 35.0%
TCCAATCAATCCAAACATAG+TGG - chr3_4:65044205-65044224 None:intergenic 35.0%
CTATGTTTGGATTGATTGGA+AGG + chr3_4:65044205-65044224 Msa0514370:intron 35.0%
ATGTTTGGATTGATTGGAAG+GGG + chr3_4:65044207-65044226 Msa0514370:intron 35.0%
TCTTTACCAATTTGTGGCTA+TGG + chr3_4:65044310-65044329 Msa0514370:intron 35.0%
! TACGATGCCTATTTTCTGTT+TGG - chr3_4:65044463-65044482 None:intergenic 35.0%
GAAGGAAATGGATGTTCATA+TGG + chr3_4:65044550-65044569 Msa0514370:intron 35.0%
AGGAAATGGATGTTCATATG+GGG + chr3_4:65044552-65044571 Msa0514370:intron 35.0%
TTAGTAAAATAGGGGAAACC+TGG + chr3_4:65044609-65044628 Msa0514370:intron 35.0%
CTCTGCTTTAGTATAAACCA+TGG - chr3_4:65044861-65044880 None:intergenic 35.0%
! TTGCTGATGTCAAGATTTTG+TGG + chr3_4:65044888-65044907 Msa0514370:intron 35.0%
! TGAAAAGGGAGAATGAGTTT+TGG - chr3_4:65045298-65045317 None:intergenic 35.0%
AATGATGTGGAAATGAAAGG+GGG - chr3_4:65045417-65045436 None:intergenic 35.0%
! AACAGCTACTCTGTGTTATT+AGG - chr3_4:65045492-65045511 None:intergenic 35.0%
AATGCATCCGTTACAAAATG+GGG - chr3_4:65045537-65045556 None:intergenic 35.0%
CAATGCATCCGTTACAAAAT+GGG - chr3_4:65045538-65045557 None:intergenic 35.0%
TTCTACTCTAGTCTCTGTTA+TGG + chr3_4:65045626-65045645 Msa0514370:intron 35.0%
GACTAACATACCAATCTTTG+CGG - chr3_4:65045727-65045746 None:intergenic 35.0%
!! TTTCTCAACTTTTGTTGTGG+CGG - chr3_4:65045780-65045799 None:intergenic 35.0%
AGTCATGTTCCTAAAAGCTT+TGG - chr3_4:65046080-65046099 None:intergenic 35.0%
! TTTTTGCACCAAATACTGAC+TGG - chr3_4:65046216-65046235 None:intergenic 35.0%
TCCCAAGAAAAATGTTGAAC+CGG + chr3_4:65046411-65046430 Msa0514370:intron 35.0%
!! ACCGGTTCAACATTTTTCTT+GGG - chr3_4:65046415-65046434 None:intergenic 35.0%
!!! TACCGGTTCAACATTTTTCT+TGG - chr3_4:65046416-65046435 None:intergenic 35.0%
TTAGCATAAAAAACCGGTAC+CGG - chr3_4:65046433-65046452 None:intergenic 35.0%
CATCAGAGAATCGAAAAGAT+AGG - chr3_4:65046456-65046475 None:intergenic 35.0%
! CTATCTTTTCGATTCTCTGA+TGG + chr3_4:65046454-65046473 Msa0514370:intron 35.0%
TGTTTCAGTCTTTGAATCCA+AGG - chr3_4:65046519-65046538 None:intergenic 35.0%
ATTGAAGGTGATGAGAATAG+TGG + chr3_4:65046663-65046682 Msa0514370:intron 35.0%
TGCCGTATTCCATTAACAAA+AGG + chr3_4:65046706-65046725 Msa0514370:CDS 35.0%
GCCGTATTCCATTAACAAAA+GGG + chr3_4:65046707-65046726 Msa0514370:CDS 35.0%
! CCCCTTTTGTTAATGGAATA+CGG - chr3_4:65046711-65046730 None:intergenic 35.0%
CCGTATTCCATTAACAAAAG+GGG + chr3_4:65046708-65046727 Msa0514370:CDS 35.0%
TTCTACCTGTCTAGTTATTG+TGG - chr3_4:65046758-65046777 None:intergenic 35.0%
! AGAAGGGTACAAAATCTACT+CGG + chr3_4:65046869-65046888 Msa0514370:CDS 35.0%
! AAGGCTAATAGCAATGGATT+TGG + chr3_4:65046905-65046924 Msa0514370:CDS 35.0%
! CAGACTTTGATCGTGAATTT+TGG - chr3_4:65046957-65046976 None:intergenic 35.0%
CAAAATTCACGATCAAAGTC+TGG + chr3_4:65046955-65046974 Msa0514370:CDS 35.0%
GAGGTAAGATTCTACCAATA+TGG + chr3_4:65046989-65047008 Msa0514370:intron 35.0%
TCTACCAATATGGCAATATG+AGG + chr3_4:65046999-65047018 Msa0514370:intron 35.0%
! ATAGTGAGCACAGTAGTTTT+AGG + chr3_4:65047352-65047371 Msa0514370:three_prime_UTR 35.0%
!! TAGTGAGCACAGTAGTTTTA+GGG + chr3_4:65047353-65047372 Msa0514370:three_prime_UTR 35.0%
GAATCTTCCTACATTCTTGA+AGG + chr3_4:65047440-65047459 Msa0514370:three_prime_UTR 35.0%
! GTTAGCAAGGGTATATTTGT+CGG + chr3_4:65047477-65047496 Msa0514370:three_prime_UTR 35.0%
! GTATATTTGTCGGAGGATTT+TGG + chr3_4:65047487-65047506 Msa0514370:three_prime_UTR 35.0%
GCGCTTAAATTTAGCAGTCT+AGG - chr3_4:65042653-65042672 None:intergenic 40.0%
CAATCTTCATCTTCCCTCTT+CGG + chr3_4:65042772-65042791 Msa0514370:CDS 40.0%
AATCTTCATCTTCCCTCTTC+GGG + chr3_4:65042773-65042792 Msa0514370:CDS 40.0%
!! TGTAGAAGAAGCACCAAAAG+CGG - chr3_4:65042893-65042912 None:intergenic 40.0%
!!! CTATCACCTTCTACTGGTTT+TGG + chr3_4:65043012-65043031 Msa0514370:CDS 40.0%
TGAAACCCAAAACCAGTAGA+AGG - chr3_4:65043021-65043040 None:intergenic 40.0%
ATGAAAGCTACGGTTCTGTT+TGG - chr3_4:65043861-65043880 None:intergenic 40.0%
TGTAACAGACCCACAGTTTA+GGG + chr3_4:65043930-65043949 Msa0514370:CDS 40.0%
TACCAACTAGAATGCTCAGT+GGG - chr3_4:65043997-65044016 None:intergenic 40.0%
!! TCATGCCACTGGCTAATTTT+GGG + chr3_4:65044033-65044052 Msa0514370:intron 40.0%
TATTCCCCAAAATTAGCCAG+TGG - chr3_4:65044041-65044060 None:intergenic 40.0%
GTGCATAGAAAGGACTCAAT+TGG + chr3_4:65044229-65044248 Msa0514370:intron 40.0%
AATGGATGTTCATATGGGGT+TGG + chr3_4:65044556-65044575 Msa0514370:intron 40.0%
ATGGATGTTCATATGGGGTT+GGG + chr3_4:65044557-65044576 Msa0514370:intron 40.0%
AACTGAGCTTCCATGATAGT+TGG + chr3_4:65044635-65044654 Msa0514370:intron 40.0%
TTCCATGATAGTTGGATCCA+AGG + chr3_4:65044643-65044662 Msa0514370:intron 40.0%
TTCCTTGGATCCAACTATCA+TGG - chr3_4:65044648-65044667 None:intergenic 40.0%
! GAATGGATTTGAGTCTTCCT+TGG - chr3_4:65044663-65044682 None:intergenic 40.0%
GGTGATAGGAAGTGATATGA+AGG + chr3_4:65044959-65044978 Msa0514370:intron 40.0%
TAGGACAGACGTTGAGAAAA+AGG + chr3_4:65045163-65045182 Msa0514370:intron 40.0%
GGTGTAGTGTAGGTAACATT+TGG - chr3_4:65045262-65045281 None:intergenic 40.0%
CCAATGCATCCGTTACAAAA+TGG - chr3_4:65045539-65045558 None:intergenic 40.0%
!!! CCATTTTGTAACGGATGCAT+TGG + chr3_4:65045536-65045555 Msa0514370:intron 40.0%
!! TGTAACGGATGCATTGGAAA+AGG + chr3_4:65045542-65045561 Msa0514370:intron 40.0%
ATGATAGAAAGAGGTAGGAG+TGG + chr3_4:65045826-65045845 Msa0514370:intron 40.0%
ATGGGCCAAATTAAAAGGCA+TGG + chr3_4:65045930-65045949 Msa0514370:intron 40.0%
! ATAGCATGTGTTTGGGATCA+TGG + chr3_4:65045961-65045980 Msa0514370:intron 40.0%
AGAAGGACAATGCACAAACT+TGG - chr3_4:65046010-65046029 None:intergenic 40.0%
TTGTCCTTCTAACCTACGAA+TGG + chr3_4:65046020-65046039 Msa0514370:intron 40.0%
TGTCCTTCTAACCTACGAAT+GGG + chr3_4:65046021-65046040 Msa0514370:intron 40.0%
ATTCCCATTCGTAGGTTAGA+AGG - chr3_4:65046027-65046046 None:intergenic 40.0%
! TAAGGAGAGCCAAAGCTTTT+AGG + chr3_4:65046068-65046087 Msa0514370:intron 40.0%
ATATACAACTCTTCACTGGG+TGG + chr3_4:65046137-65046156 Msa0514370:intron 40.0%
TGTATCCACCAGTCAGTATT+TGG + chr3_4:65046205-65046224 Msa0514370:intron 40.0%
CAGAGACAATGACTTCATCT+TGG - chr3_4:65046330-65046349 None:intergenic 40.0%
! AACATTTTTCTTGGGAGAGC+AGG - chr3_4:65046407-65046426 None:intergenic 40.0%
GAAAAATGTTGAACCGGTAC+CGG + chr3_4:65046417-65046436 Msa0514370:intron 40.0%
TTCAAGCAGATACTCTTCCT+TGG + chr3_4:65046499-65046518 Msa0514370:CDS 40.0%
! TCAGCTTCCCCTTTTGTTAA+TGG - chr3_4:65046718-65046737 None:intergenic 40.0%
ACTAGCCACAATAACTAGAC+AGG + chr3_4:65046750-65046769 Msa0514370:CDS 40.0%
! TCTTTTCAGCTGAAAGGATC+TGG + chr3_4:65046833-65046852 Msa0514370:intron 40.0%
TGGAGCGGAATTATCTAGAA+GGG + chr3_4:65046853-65046872 Msa0514370:CDS 40.0%
ACGGGATATGGAGATTATGA+TGG + chr3_4:65047207-65047226 Msa0514370:CDS 40.0%
TATGGAGATTATGATGGCTG+AGG + chr3_4:65047213-65047232 Msa0514370:CDS 40.0%
ATTATGATGGCTGAGGACAT+GGG + chr3_4:65047220-65047239 Msa0514370:CDS 40.0%
TTCAGCATACATGGTTAGCA+AGG + chr3_4:65047464-65047483 Msa0514370:three_prime_UTR 40.0%
TCAGCATACATGGTTAGCAA+GGG + chr3_4:65047465-65047484 Msa0514370:three_prime_UTR 40.0%
GAAAAAAGTGATGGCATGTG+AGG + chr3_4:65047509-65047528 Msa0514370:three_prime_UTR 40.0%
!! GAAGAAGGAGTACCGAAAGT+TGG - chr3_4:65042823-65042842 None:intergenic 45.0%
! CTGAAAGCTGGTGTTGAAGA+AGG - chr3_4:65042838-65042857 None:intergenic 45.0%
AAAAGCGGGAGTTGAAGAAG+GGG - chr3_4:65042878-65042897 None:intergenic 45.0%
CAAAAGCGGGAGTTGAAGAA+GGG - chr3_4:65042879-65042898 None:intergenic 45.0%
!! GTAGAAGAAGCACCAAAAGC+GGG - chr3_4:65042892-65042911 None:intergenic 45.0%
! AGAGAACGGTGTTGAGAAGA+GGG - chr3_4:65042938-65042957 None:intergenic 45.0%
! GGTTGTTGTTGAGCAGAGAA+CGG - chr3_4:65042952-65042971 None:intergenic 45.0%
TTGTTGCTGCTGCTGTTGTT+GGG - chr3_4:65042974-65042993 None:intergenic 45.0%
TGGGTTTCAGAATTCTACGC+CGG + chr3_4:65043032-65043051 Msa0514370:CDS 45.0%
TGAGAATTTGGAAACGGCGA+AGG - chr3_4:65043066-65043085 None:intergenic 45.0%
TCCAGTTCCATTCTCACTAG+CGG + chr3_4:65043113-65043132 Msa0514370:CDS 45.0%
GTGTAACAGACCCACAGTTT+AGG + chr3_4:65043929-65043948 Msa0514370:CDS 45.0%
! CTTACATCTGAAACACCAGC+AGG - chr3_4:65043961-65043980 None:intergenic 45.0%
TTCCCACTGAGCATTCTAGT+TGG + chr3_4:65043992-65044011 Msa0514370:intron 45.0%
CTACCAACTAGAATGCTCAG+TGG - chr3_4:65043998-65044017 None:intergenic 45.0%
!! GTCATGCCACTGGCTAATTT+TGG + chr3_4:65044032-65044051 Msa0514370:intron 45.0%
!! CATGCCACTGGCTAATTTTG+GGG + chr3_4:65044034-65044053 Msa0514370:intron 45.0%
ATGTTGCTAGATCATGTGGG+CGG + chr3_4:65044065-65044084 Msa0514370:intron 45.0%
! GTGCTGATAGAGAACGTCTT+TGG + chr3_4:65044118-65044137 Msa0514370:CDS 45.0%
CTTTGGCCACAACAAGTTCA+AGG + chr3_4:65044135-65044154 Msa0514370:CDS 45.0%
! ATTGGAAGGGGTGCATAGAA+AGG + chr3_4:65044219-65044238 Msa0514370:intron 45.0%
GTAGCTCCATAGCCACAAAT+TGG - chr3_4:65044319-65044338 None:intergenic 45.0%
AATTCCGATGTTTGGGAGCA+CGG - chr3_4:65044357-65044376 None:intergenic 45.0%
! TCATATGGGGTTGGGCATTT+TGG + chr3_4:65044565-65044584 Msa0514370:intron 45.0%
CAAATGTCTGGCATCATTGC+AGG - chr3_4:65044781-65044800 None:intergenic 45.0%
TTCTGCTCATCAGATGTCCA+TGG + chr3_4:65044841-65044860 Msa0514370:intron 45.0%
ACGGATGCATTGGAAAAGGA+AGG + chr3_4:65045546-65045565 Msa0514370:intron 45.0%
TCAAACAATCCCCTCCACAA+AGG - chr3_4:65045685-65045704 None:intergenic 45.0%
TGTGGAGGGGATTGTTTGAT+TGG + chr3_4:65045686-65045705 Msa0514370:intron 45.0%
AACTTGGATGTGCGTTAGGT+GGG - chr3_4:65045994-65046013 None:intergenic 45.0%
AAACTTGGATGTGCGTTAGG+TGG - chr3_4:65045995-65046014 None:intergenic 45.0%
CACAAACTTGGATGTGCGTT+AGG - chr3_4:65045998-65046017 None:intergenic 45.0%
! GCAGCAGTCTTTTGCCATTA+TGG - chr3_4:65046178-65046197 None:intergenic 45.0%
! TTGCACCAAATACTGACTGG+TGG - chr3_4:65046213-65046232 None:intergenic 45.0%
GAAGGTGATGAGAATAGTGG+AGG + chr3_4:65046666-65046685 Msa0514370:intron 45.0%
CTACTTCCTGTTCTGTTGCT+TGG + chr3_4:65046790-65046809 Msa0514370:intron 45.0%
! TTCCTGTTCTGTTGCTTGGA+TGG + chr3_4:65046794-65046813 Msa0514370:intron 45.0%
TTCCATCCAAGCAACAGAAC+AGG - chr3_4:65046799-65046818 None:intergenic 45.0%
CTGGAGCGGAATTATCTAGA+AGG + chr3_4:65046852-65046871 Msa0514370:CDS 45.0%
CGTGTCAAGGCTAATAGCAA+TGG + chr3_4:65046899-65046918 Msa0514370:CDS 45.0%
TGGTAACTCAGCTCATCTTC+TGG + chr3_4:65046925-65046944 Msa0514370:CDS 45.0%
GGTAACTCAGCTCATCTTCT+GGG + chr3_4:65046926-65046945 Msa0514370:CDS 45.0%
ATGGTCTACTTTGCGAGAAC+AGG + chr3_4:65047126-65047145 Msa0514370:intron 45.0%
ATGGATGCCATAGCAAGACT+TGG + chr3_4:65047163-65047182 Msa0514370:CDS 45.0%
AACACTGCCAAGTCTTGCTA+TGG - chr3_4:65047173-65047192 None:intergenic 45.0%
GATTATGATGGCTGAGGACA+TGG + chr3_4:65047219-65047238 Msa0514370:CDS 45.0%
GACATGGGAACCTCAGAAAA+TGG + chr3_4:65047235-65047254 Msa0514370:CDS 45.0%
! AGGGACACTTTTCGTGTAGT+CGG + chr3_4:65047372-65047391 Msa0514370:three_prime_UTR 45.0%
TGACCCATTTGCGATGTTTG+TGG + chr3_4:65047410-65047429 Msa0514370:three_prime_UTR 45.0%
AGGCCACAAACATCGCAAAT+GGG - chr3_4:65047416-65047435 None:intergenic 45.0%
TAGGCCACAAACATCGCAAA+TGG - chr3_4:65047417-65047436 None:intergenic 45.0%
GCTGAACCCTTCAAGAATGT+AGG - chr3_4:65047450-65047469 None:intergenic 45.0%
CTTGAAGGGTTCAGCATACA+TGG + chr3_4:65047455-65047474 Msa0514370:three_prime_UTR 45.0%
! AGCAAGGGTATATTTGTCGG+AGG + chr3_4:65047480-65047499 Msa0514370:three_prime_UTR 45.0%
!! ATGTTAAATAATTATATAAA+TGG + chr3_4:65044719-65044738 Msa0514370:intron 5.0%
TGAAGATTGACCGCCGAACA+TGG - chr3_4:65042761-65042780 None:intergenic 50.0%
! AGTGCCGAATGCTGAAGATG+GGG - chr3_4:65042800-65042819 None:intergenic 50.0%
!! GAGTGCCGAATGCTGAAGAT+GGG - chr3_4:65042801-65042820 None:intergenic 50.0%
GCATTCGGCACTCCAACTTT+CGG + chr3_4:65042808-65042827 Msa0514370:CDS 50.0%
CCAAAAGCGGGAGTTGAAGA+AGG - chr3_4:65042880-65042899 None:intergenic 50.0%
! CCTTCTTCAACTCCCGCTTT+TGG + chr3_4:65042877-65042896 Msa0514370:CDS 50.0%
GCTTCTTCTACACCCGCTTT+CGG + chr3_4:65042901-65042920 Msa0514370:CDS 50.0%
! CAGAGAACGGTGTTGAGAAG+AGG - chr3_4:65042939-65042958 None:intergenic 50.0%
TGTTGCTGCTGCTGTTGTTG+GGG - chr3_4:65042973-65042992 None:intergenic 50.0%
GTTGTTGCTGCTGCTGTTGT+TGG - chr3_4:65042975-65042994 None:intergenic 50.0%
TTTGGAAACGGCGAAGGTTG+CGG - chr3_4:65043060-65043079 None:intergenic 50.0%
TCCGCTAGTGAGAATGGAAC+TGG - chr3_4:65043117-65043136 None:intergenic 50.0%
TCACGATCCGCTAGTGAGAA+TGG - chr3_4:65043123-65043142 None:intergenic 50.0%
CAGGCTTCACCCTAAACTGT+GGG - chr3_4:65043942-65043961 None:intergenic 50.0%
ATCATGTGGGCGGAAGCTAT+GGG + chr3_4:65044075-65044094 Msa0514370:CDS 50.0%
GAAGCTATGGGGAAGCTTGA+GGG + chr3_4:65044087-65044106 Msa0514370:CDS 50.0%
TATGGGGAAGCTTGAGGGTA+TGG + chr3_4:65044092-65044111 Msa0514370:CDS 50.0%
GGATCTTTCCCAACGCCTTA+AGG + chr3_4:65044164-65044183 Msa0514370:CDS 50.0%
TCTTCCGTGCTCCCAAACAT+CGG + chr3_4:65044350-65044369 Msa0514370:intron 50.0%
CATGGAAGCTCAGTTACACC+AGG - chr3_4:65044630-65044649 None:intergenic 50.0%
TTAGCAGTTCCCGTGTGTCT+AGG - chr3_4:65045015-65045034 None:intergenic 50.0%
! AAAGGGGGCATGGCATTAAC+AGG - chr3_4:65045402-65045421 None:intergenic 50.0%
TGTGGAAATGAAAGGGGGCA+TGG - chr3_4:65045412-65045431 None:intergenic 50.0%
GATCGGCGTCTAATCCTTTG+TGG + chr3_4:65045668-65045687 Msa0514370:intron 50.0%
GGCGTCTAATCCTTTGTGGA+GGG + chr3_4:65045672-65045691 Msa0514370:intron 50.0%
GCGTCTAATCCTTTGTGGAG+GGG + chr3_4:65045673-65045692 Msa0514370:intron 50.0%
GAGTTAGCAGCCGCAAAGAT+TGG + chr3_4:65045714-65045733 Msa0514370:intron 50.0%
! GCATGTGTTTGGGATCATGG+TGG + chr3_4:65045964-65045983 Msa0514370:intron 50.0%
TTCTTGGGAGAGCAGGAGAA+AGG - chr3_4:65046400-65046419 None:intergenic 50.0%
! GATGAGAATAGTGGAGGCGT+TGG + chr3_4:65046672-65046691 Msa0514370:CDS 50.0%
!! AGAATAGTGGAGGCGTTGGA+GGG + chr3_4:65046676-65046695 Msa0514370:CDS 50.0%
TCAGCTGAAAGGATCTGGAG+CGG + chr3_4:65046838-65046857 Msa0514370:intron 50.0%
GGTAGAATCTTACCTCCTGC+AGG - chr3_4:65046985-65047004 None:intergenic 50.0%
! ACAGGTATTGCAGCAGCAGA+TGG + chr3_4:65047144-65047163 Msa0514370:intron 50.0%
! GACACTTTTCGTGTAGTCGG+CGG + chr3_4:65047375-65047394 Msa0514370:three_prime_UTR 50.0%
AGATTGACCGCCGAACATGG+TGG - chr3_4:65042758-65042777 None:intergenic 55.0%
TGAAGATGGGGTCCCGAAGA+GGG - chr3_4:65042788-65042807 None:intergenic 55.0%
GGGACCCCATCTTCAGCATT+CGG + chr3_4:65042793-65042812 Msa0514370:CDS 55.0%
!! GGAGTGCCGAATGCTGAAGA+TGG - chr3_4:65042802-65042821 None:intergenic 55.0%
!! AAGAAGGGGTACCGAAGCCT+GGG - chr3_4:65042864-65042883 None:intergenic 55.0%
TCTTCTACACCCGCTTTCGG+TGG + chr3_4:65042904-65042923 Msa0514370:CDS 55.0%
GAAGAACCACCACCGAAAGC+GGG - chr3_4:65042916-65042935 None:intergenic 55.0%
GGAAGAACCACCACCGAAAG+CGG - chr3_4:65042917-65042936 None:intergenic 55.0%
GCAGGCTTCACCCTAAACTG+TGG - chr3_4:65043943-65043962 None:intergenic 55.0%
! CAGTTTAGGGTGAAGCCTGC+TGG + chr3_4:65043943-65043962 Msa0514370:CDS 55.0%
GATCATGTGGGCGGAAGCTA+TGG + chr3_4:65044074-65044093 Msa0514370:intron 55.0%
TCATGTGGGCGGAAGCTATG+GGG + chr3_4:65044076-65044095 Msa0514370:CDS 55.0%
GGAAGCTATGGGGAAGCTTG+AGG + chr3_4:65044086-65044105 Msa0514370:CDS 55.0%
! GATGTTTGGGAGCACGGAAG+AGG - chr3_4:65044351-65044370 None:intergenic 55.0%
! GCGTCGGTAACCTAGACACA+CGG + chr3_4:65045002-65045021 Msa0514370:intron 55.0%
CGTCGGTAACCTAGACACAC+GGG + chr3_4:65045003-65045022 Msa0514370:intron 55.0%
CGGCGTCTAATCCTTTGTGG+AGG + chr3_4:65045671-65045690 Msa0514370:intron 55.0%
!! GAGAATAGTGGAGGCGTTGG+AGG + chr3_4:65046675-65046694 Msa0514370:CDS 55.0%
ACTCGGCGTATCTCGTGTCA+AGG + chr3_4:65046886-65046905 Msa0514370:CDS 55.0%
TCAAAGTCTGGCTGACCTGC+AGG + chr3_4:65046967-65046986 Msa0514370:CDS 55.0%
!! GTGTTCTGAAGCGAGACGCA+CGG + chr3_4:65047188-65047207 Msa0514370:CDS 55.0%
!! TGTTCTGAAGCGAGACGCAC+GGG + chr3_4:65047189-65047208 Msa0514370:CDS 55.0%
ACGCCGCACACCACCATGTT+CGG + chr3_4:65042745-65042764 Msa0514370:exon 60.0%
CTGAAGATGGGGTCCCGAAG+AGG - chr3_4:65042789-65042808 None:intergenic 60.0%
ACACCAGCTTTCAGCACCCC+AGG + chr3_4:65042844-65042863 Msa0514370:CDS 60.0%
!! AAGCCTGGGGTGCTGAAAGC+TGG - chr3_4:65042850-65042869 None:intergenic 60.0%
GCTTTCAGCACCCCAGGCTT+CGG + chr3_4:65042850-65042869 Msa0514370:CDS 60.0%
!! AGAAGGGGTACCGAAGCCTG+GGG - chr3_4:65042863-65042882 None:intergenic 60.0%
!! GAAGAAGGGGTACCGAAGCC+TGG - chr3_4:65042865-65042884 None:intergenic 60.0%
TCTACACCCGCTTTCGGTGG+TGG + chr3_4:65042907-65042926 Msa0514370:CDS 60.0%
!! GTGGAGGCGTTGGAGGGAAA+AGG + chr3_4:65046682-65046701 Msa0514370:CDS 60.0%
AAGTCTGGCTGACCTGCAGG+AGG + chr3_4:65046970-65046989 Msa0514370:CDS 60.0%
GAAGCGAGACGCACGGGATA+TGG + chr3_4:65047195-65047214 Msa0514370:CDS 60.0%
! CCGCCGAACATGGTGGTGTG+CGG - chr3_4:65042751-65042770 None:intergenic 65.0%
CCGCACACCACCATGTTCGG+CGG + chr3_4:65042748-65042767 Msa0514370:exon 65.0%
AACGGCGAAGGTTGCGGCGC+CGG - chr3_4:65043054-65043073 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 65042622 65047572 65042622 ID=Msa0514370;Name=Msa0514370
chr3_4 mRNA 65042622 65047572 65042622 ID=Msa0514370-mRNA-1;Parent=Msa0514370;Name=Msa0514370-mRNA-1;_AED=0.09;_eAED=0.09;_QI=138|1|1|1|1|1|9|302|380
chr3_4 exon 65042622 65043149 65042622 ID=Msa0514370-mRNA-1:exon:16458;Parent=Msa0514370-mRNA-1
chr3_4 exon 65043239 65043292 65043239 ID=Msa0514370-mRNA-1:exon:16459;Parent=Msa0514370-mRNA-1
chr3_4 exon 65043916 65043975 65043916 ID=Msa0514370-mRNA-1:exon:16460;Parent=Msa0514370-mRNA-1
chr3_4 exon 65044075 65044185 65044075 ID=Msa0514370-mRNA-1:exon:16461;Parent=Msa0514370-mRNA-1
chr3_4 exon 65046325 65046390 65046325 ID=Msa0514370-mRNA-1:exon:16462;Parent=Msa0514370-mRNA-1
chr3_4 exon 65046486 65046572 65046486 ID=Msa0514370-mRNA-1:exon:16463;Parent=Msa0514370-mRNA-1
chr3_4 exon 65046670 65046771 65046670 ID=Msa0514370-mRNA-1:exon:16464;Parent=Msa0514370-mRNA-1
chr3_4 exon 65046842 65046991 65046842 ID=Msa0514370-mRNA-1:exon:16465;Parent=Msa0514370-mRNA-1
chr3_4 exon 65047148 65047572 65047148 ID=Msa0514370-mRNA-1:exon:16466;Parent=Msa0514370-mRNA-1
chr3_4 five_prime_UTR 65042622 65042759 65042622 ID=Msa0514370-mRNA-1:five_prime_utr;Parent=Msa0514370-mRNA-1
chr3_4 CDS 65042760 65043149 65042760 ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1
chr3_4 CDS 65043239 65043292 65043239 ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1
chr3_4 CDS 65043916 65043975 65043916 ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1
chr3_4 CDS 65044075 65044185 65044075 ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1
chr3_4 CDS 65046325 65046390 65046325 ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1
chr3_4 CDS 65046486 65046572 65046486 ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1
chr3_4 CDS 65046670 65046771 65046670 ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1
chr3_4 CDS 65046842 65046991 65046842 ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1
chr3_4 CDS 65047148 65047270 65047148 ID=Msa0514370-mRNA-1:cds;Parent=Msa0514370-mRNA-1
chr3_4 three_prime_UTR 65047271 65047572 65047271 ID=Msa0514370-mRNA-1:three_prime_utr;Parent=Msa0514370-mRNA-1
Gene Sequence

>Msa0514370

ATGTTCGGCGGTCAATCTTCATCTTCCCTCTTCGGGACCCCATCTTCAGCATTCGGCACTCCAACTTTCGGTACTCCTTCTTCAACACCAGCTTTCAGCACCCCAGGCTTCGGTACCCCTTCTTCAACTCCCGCTTTTGGTGCTTCTTCTACACCCGCTTTCGGTGGTGGTTCTTCCCTCTTCTCAACACCGTTCTCTGCTCAACAACAACCCCAACAACAGCAGCAGCAACAACAAAATTCACTCTTTCAACTATCACCTTCTACTGGTTTTGGGTTTCAGAATTCTACGCCGGCGCCGCAACCTTCGCCGTTTCCAAATTCTCAATTGACTACTCAAATGGCTAATGTTGCTCCAGTTCCATTCTCACTAGCGGATCGTGATATTCAAGCGATTCTTGATTCTTATAAAGAAGATGCTGGAAACCCCAAATACGCTTTTAAGCATTTGTTATTCAGTGTAACAGACCCACAGTTTAGGGTGAAGCCTGCTGGTGTTTCAGATATCATGTGGGCGGAAGCTATGGGGAAGCTTGAGGGTATGGAAAGTGCTGATAGAGAACGTCTTTGGCCACAACAAGTTCAAGGTTTTAAGGATCTTTCCCAACGCCTTAAGCTCCAAGATGAAGTCATTGTCTCTGATGCAGAGAGATTAAGTGTAACCCAAAGCAATGTTAAAATGCTCCAAAGACATTTTCAAGCAGATACTCTTCCTTGGATTCAAAGACTGAAACAGAAAGAACAGATTCTTCAGCAACGTATTTTAAGAGTGATGAGAATAGTGGAGGCGTTGGAGGGAAAAGGCTGCCGTATTCCATTAACAAAAGGGGAAGCTGAACTCGCTGAGAAACTAGCCACAATAACTAGACAGCTGAAAGGATCTGGAGCGGAATTATCTAGAAGGGTACAAAATCTACTCGGCGTATCTCGTGTCAAGGCTAATAGCAATGGATTTGGTAACTCAGCTCATCTTCTGGGCTCAACCAAAATTCACGATCAAAGTCTGGCTGACCTGCAGGAGGTATTGCAGCAGCAGATGGATGCCATAGCAAGACTTGGCAGTGTTCTGAAGCGAGACGCACGGGATATGGAGATTATGATGGCTGAGGACATGGGAACCTCAGAAAATGGACATTTAATGTAA

Protein sequence

>Msa0514370

MFGGQSSSSLFGTPSSAFGTPTFGTPSSTPAFSTPGFGTPSSTPAFGASSTPAFGGGSSLFSTPFSAQQQPQQQQQQQQNSLFQLSPSTGFGFQNSTPAPQPSPFPNSQLTTQMANVAPVPFSLADRDIQAILDSYKEDAGNPKYAFKHLLFSVTDPQFRVKPAGVSDIMWAEAMGKLEGMESADRERLWPQQVQGFKDLSQRLKLQDEVIVSDAERLSVTQSNVKMLQRHFQADTLPWIQRLKQKEQILQQRILRVMRIVEALEGKGCRIPLTKGEAELAEKLATITRQLKGSGAELSRRVQNLLGVSRVKANSNGFGNSAHLLGSTKIHDQSLADLQEVLQQQMDAIARLGSVLKRDARDMEIMMAEDMGTSENGHLM*