Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373890 | RHN69350.1 | 81.597 | 288 | 28 | 3 | 1 | 283 | 36 | 303 | 7.12e-167 | 474 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373890 | sp|F4JFU8|OBL1_ARATH | 41.554 | 296 | 153 | 4 | 2 | 277 | 213 | 508 | 3.30e-73 | 236 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373890 | A0A396IVB1 | 81.597 | 288 | 28 | 3 | 1 | 283 | 36 | 303 | 3.40e-167 | 474 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0162580 | Msa0373890 | 0.812380 | 4.364035e-51 | -8.615850e-47 |
| Msa0373890 | Msa0423020 | 0.800237 | 1.583719e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373890 | MtrunA17_Chr3g0123741 | 81.597 | 288 | 28 | 3 | 1 | 283 | 36 | 303 | 6.55e-171 | 474 |
| Msa0373890 | MtrunA17_Chr5g0402171 | 59.717 | 283 | 108 | 3 | 2 | 279 | 181 | 462 | 7.84e-119 | 348 |
| Msa0373890 | MtrunA17_Chr1g0153271 | 53.357 | 283 | 125 | 4 | 2 | 279 | 179 | 459 | 9.14e-99 | 297 |
| Msa0373890 | MtrunA17_Chr7g0276561 | 41.083 | 314 | 151 | 5 | 2 | 284 | 186 | 496 | 6.07e-76 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0373890 | AT5G67050.1 | 53.310 | 287 | 121 | 6 | 2 | 276 | 177 | 462 | 1.33e-101 | 305 |
| Msa0373890 | AT5G42930.1 | 51.228 | 285 | 129 | 4 | 3 | 279 | 179 | 461 | 7.77e-99 | 298 |
| Msa0373890 | AT1G56630.1 | 46.599 | 294 | 138 | 5 | 2 | 278 | 180 | 471 | 6.14e-87 | 268 |
| Msa0373890 | AT1G45201.1 | 48.592 | 284 | 134 | 6 | 3 | 279 | 184 | 462 | 4.24e-84 | 260 |
| Msa0373890 | AT1G45201.3 | 48.592 | 284 | 134 | 6 | 3 | 279 | 209 | 487 | 7.53e-84 | 260 |
| Msa0373890 | AT3G14360.1 | 41.554 | 296 | 153 | 4 | 2 | 277 | 213 | 508 | 3.36e-74 | 236 |
| Msa0373890 | AT5G42930.2 | 51.456 | 206 | 95 | 2 | 3 | 205 | 179 | 382 | 1.17e-69 | 221 |
| Msa0373890 | AT1G45201.2 | 50.244 | 205 | 95 | 4 | 3 | 205 | 184 | 383 | 1.21e-60 | 197 |
Find 59 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATGATGTGTCATTTCTTT+TGG | 0.251280 | 3_1:-73029315 | Msa0373890:CDS |
| ATCTCATGGTTGGAGCTTCC+TGG | 0.307084 | 3_1:-73029566 | Msa0373890:CDS |
| AACACAATGTCCTTTATATC+AGG | 0.310096 | 3_1:+73029149 | None:intergenic |
| CTTCAAGGGGTTTACACATT+TGG | 0.328267 | 3_1:-73029287 | Msa0373890:CDS |
| TGATTTGTTTCAATTTGTTT+AGG | 0.333018 | 3_1:+73029479 | None:intergenic |
| GAGAAGAATTTCAAAGATAA+TGG | 0.367227 | 3_1:-73029224 | Msa0373890:CDS |
| ACATTGTGTTTAAGCACTTT+GGG | 0.384637 | 3_1:-73029136 | Msa0373890:CDS |
| GGTAAGGTTAACATAATCTT+GGG | 0.389871 | 3_1:+73028899 | None:intergenic |
| TTAAGAGCATTTCGGCTTGT+TGG | 0.392156 | 3_1:-73028948 | Msa0373890:CDS |
| CTTGTTGGCTTACTAGTGCC+TGG | 0.403502 | 3_1:-73028933 | Msa0373890:CDS |
| CATTTGGTCAACCAAGAGTT+GGG | 0.405055 | 3_1:-73029271 | Msa0373890:CDS |
| TAGGTTTCCTCCTGATATAA+AGG | 0.410316 | 3_1:-73029159 | Msa0373890:CDS |
| TGGTTGGAGCTTCCTGGACT+TGG | 0.410975 | 3_1:-73029560 | Msa0373890:CDS |
| GACATTGTGTTTAAGCACTT+TGG | 0.419779 | 3_1:-73029137 | Msa0373890:CDS |
| GCTGGTTTCATGAAAGCCTT+AGG | 0.419839 | 3_1:-73029527 | Msa0373890:CDS |
| TCGAGAAAATTGATCCCAAC+CGG | 0.427082 | 3_1:+73028877 | None:intergenic |
| TATGTTAACCTTACCCGGTT+GGG | 0.444416 | 3_1:-73028891 | Msa0373890:CDS |
| GGGTAAGGTTAACATAATCT+TGG | 0.451197 | 3_1:+73028898 | None:intergenic |
| AAAGCAAAGTTTATATTGAC+TGG | 0.451591 | 3_1:-73029389 | Msa0373890:CDS |
| GTTGCTTCTTTGTAAACCTA+AGG | 0.452412 | 3_1:+73029511 | None:intergenic |
| GTTATTTGATGCTGAACAAT+GGG | 0.461712 | 3_1:-73029603 | Msa0373890:CDS |
| TGAAACTTGGCAGATTATCA+AGG | 0.466744 | 3_1:-73029707 | Msa0373890:intron |
| AGTAGTAAGCTTCAAGTGTA+TGG | 0.481831 | 3_1:+73029453 | None:intergenic |
| AAATTGATCCCAACCGGGTA+AGG | 0.484292 | 3_1:+73028883 | None:intergenic |
| ATAGCTATGATATTATTCCT+AGG | 0.487380 | 3_1:-73029178 | Msa0373890:CDS |
| TTTACTAAAGAAACATTTGA+AGG | 0.493912 | 3_1:-73029420 | Msa0373890:CDS |
| ATATTGACTGGTCACAGTCT+AGG | 0.505731 | 3_1:-73029377 | Msa0373890:CDS |
| ACATTTGGTCAACCAAGAGT+TGG | 0.513661 | 3_1:-73029272 | Msa0373890:CDS |
| GCTCATAAGGAGCTTCACTA+TGG | 0.518248 | 3_1:-73029009 | Msa0373890:CDS |
| ACCCATCCCTCTTGATACTC+AGG | 0.520693 | 3_1:+73028972 | None:intergenic |
| TTCACTATGGTGTCTAGGTA+TGG | 0.526854 | 3_1:-73028996 | Msa0373890:CDS |
| GGAGCTTCACTATGGTGTCT+AGG | 0.529109 | 3_1:-73029001 | Msa0373890:CDS |
| AGTTATTTGATGCTGAACAA+TGG | 0.532178 | 3_1:-73029604 | Msa0373890:CDS |
| TACAAAGAAGCAACATGGGT+TGG | 0.532370 | 3_1:-73029502 | Msa0373890:CDS |
| GACCTGAGTATCAAGAGGGA+TGG | 0.541599 | 3_1:-73028974 | Msa0373890:CDS |
| TCTTGGGGTAAGTGTACTCC+AGG | 0.542634 | 3_1:+73028915 | None:intergenic |
| AAGATTATGTTAACCTTACC+CGG | 0.543967 | 3_1:-73028896 | Msa0373890:CDS |
| AATATGTCATCCCCAACTCT+TGG | 0.550464 | 3_1:+73029260 | None:intergenic |
| TTATGTTAACCTTACCCGGT+TGG | 0.555126 | 3_1:-73028892 | Msa0373890:CDS |
| TTACTAAAGAAACATTTGAA+GGG | 0.565367 | 3_1:-73029419 | Msa0373890:CDS |
| TGACATATTTGCTCAATACA+TGG | 0.571260 | 3_1:-73029246 | Msa0373890:CDS |
| ACCTGAGTATCAAGAGGGAT+GGG | 0.576968 | 3_1:-73028973 | Msa0373890:CDS |
| TTTGATGCTGAACAATGGGC+AGG | 0.578140 | 3_1:-73029599 | Msa0373890:CDS |
| TCATGCAACATCAATATCGC+AGG | 0.583293 | 3_1:+73029332 | None:intergenic |
| AGGTTTACAAAGAAGCAACA+TGG | 0.584733 | 3_1:-73029507 | Msa0373890:CDS |
| CAGGTGATTGTGATATCTCA+TGG | 0.585512 | 3_1:-73029580 | Msa0373890:CDS |
| TTTATATCAGGAGGAAACCT+AGG | 0.585879 | 3_1:+73029161 | None:intergenic |
| TAGAAACTATAAAGTGCAAG+AGG | 0.587735 | 3_1:-73029096 | Msa0373890:CDS |
| CGAGAAAATTGATCCCAACC+GGG | 0.608715 | 3_1:+73028878 | None:intergenic |
| GGTTTACAAAGAAGCAACAT+GGG | 0.611206 | 3_1:-73029506 | Msa0373890:CDS |
| TGATTGTGATATCTCATGGT+TGG | 0.618477 | 3_1:-73029576 | Msa0373890:CDS |
| TTGTTCAGCATCAAATAACT+CGG | 0.621021 | 3_1:+73029607 | None:intergenic |
| GTATGGACCTGAGTATCAAG+AGG | 0.628629 | 3_1:-73028979 | Msa0373890:CDS |
| ACAATGTCCTTTATATCAGG+AGG | 0.632118 | 3_1:+73029152 | None:intergenic |
| ATTTGGTCAACCAAGAGTTG+GGG | 0.645826 | 3_1:-73029270 | Msa0373890:CDS |
| AAATTACTATGTAGGTGTCG+TGG | 0.653018 | 3_1:+73029639 | None:intergenic |
| TTGACTGGTCACAGTCTAGG+TGG | 0.655054 | 3_1:-73029374 | Msa0373890:CDS |
| TATGGACCTGAGTATCAAGA+GGG | 0.673621 | 3_1:-73028978 | Msa0373890:CDS |
| GTAAGGTTAACATAATCTTG+GGG | 0.683904 | 3_1:+73028900 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATAGTAAGGTTGATTAT+TGG | - | chr3_1:73029007-73029026 | Msa0373890:CDS | 20.0% |
| !!! | TGATTTGTTTCAATTTGTTT+AGG | + | chr3_1:73029269-73029288 | None:intergenic | 20.0% |
| !! | TTTACTAAAGAAACATTTGA+AGG | - | chr3_1:73029325-73029344 | Msa0373890:CDS | 20.0% |
| !! | TTACTAAAGAAACATTTGAA+GGG | - | chr3_1:73029326-73029345 | Msa0373890:CDS | 20.0% |
| !!! | AAAGAAAAGTAGTTTTTGTT+TGG | + | chr3_1:73029677-73029696 | None:intergenic | 20.0% |
| !!! | ATAATAGTAAGGTTGATTAT+TGG | - | chr3_1:73029007-73029026 | Msa0373890:CDS | 20.0% |
| !!! | TGATTTGTTTCAATTTGTTT+AGG | + | chr3_1:73029269-73029288 | None:intergenic | 20.0% |
| !! | TTTACTAAAGAAACATTTGA+AGG | - | chr3_1:73029325-73029344 | Msa0373890:CDS | 20.0% |
| !! | TTACTAAAGAAACATTTGAA+GGG | - | chr3_1:73029326-73029345 | Msa0373890:CDS | 20.0% |
| !!! | AAAGAAAAGTAGTTTTTGTT+TGG | + | chr3_1:73029677-73029696 | None:intergenic | 20.0% |
| !!! | ACCTACATAGTAATTTTTAG+AGG | - | chr3_1:73029113-73029132 | Msa0373890:CDS | 25.0% |
| !! | TCCTCTAAAAATTACTATGT+AGG | + | chr3_1:73029117-73029136 | None:intergenic | 25.0% |
| ! | AAAGCAAAGTTTATATTGAC+TGG | - | chr3_1:73029356-73029375 | Msa0373890:CDS | 25.0% |
| ! | GAGAAGAATTTCAAAGATAA+TGG | - | chr3_1:73029521-73029540 | Msa0373890:CDS | 25.0% |
| ! | ATAGCTATGATATTATTCCT+AGG | - | chr3_1:73029567-73029586 | Msa0373890:CDS | 25.0% |
| !!! | ACCTACATAGTAATTTTTAG+AGG | - | chr3_1:73029113-73029132 | Msa0373890:CDS | 25.0% |
| !! | TCCTCTAAAAATTACTATGT+AGG | + | chr3_1:73029117-73029136 | None:intergenic | 25.0% |
| ! | AAAGCAAAGTTTATATTGAC+TGG | - | chr3_1:73029356-73029375 | Msa0373890:CDS | 25.0% |
| ! | GAGAAGAATTTCAAAGATAA+TGG | - | chr3_1:73029521-73029540 | Msa0373890:CDS | 25.0% |
| ! | ATAGCTATGATATTATTCCT+AGG | - | chr3_1:73029567-73029586 | Msa0373890:CDS | 25.0% |
| !!! | TTTTTTGTCTCTCCAAATTG+CGG | - | chr3_1:73028932-73028951 | Msa0373890:CDS | 30.0% |
| GATGACAATGAATAAGTTCT+AGG | + | chr3_1:73028977-73028996 | None:intergenic | 30.0% | |
| !!! | CCTTACTATTATTTTGATCC+AGG | + | chr3_1:73028999-73029018 | None:intergenic | 30.0% |
| CCTGGATCAAAATAATAGTA+AGG | - | chr3_1:73028996-73029015 | Msa0373890:CDS | 30.0% | |
| ! | TAGTAAGGTTGATTATTGGT+TGG | - | chr3_1:73029011-73029030 | Msa0373890:CDS | 30.0% |
| ! | ATTGGTTGGTATTTGAAACT+TGG | - | chr3_1:73029025-73029044 | Msa0373890:CDS | 30.0% |
| TTGTTCAGCATCAAATAACT+CGG | + | chr3_1:73029141-73029160 | None:intergenic | 30.0% | |
| AGTTATTTGATGCTGAACAA+TGG | - | chr3_1:73029141-73029160 | Msa0373890:CDS | 30.0% | |
| GTTATTTGATGCTGAACAAT+GGG | - | chr3_1:73029142-73029161 | Msa0373890:CDS | 30.0% | |
| TGACATATTTGCTCAATACA+TGG | - | chr3_1:73029499-73029518 | Msa0373890:CDS | 30.0% | |
| AACACAATGTCCTTTATATC+AGG | + | chr3_1:73029599-73029618 | None:intergenic | 30.0% | |
| ACATTGTGTTTAAGCACTTT+GGG | - | chr3_1:73029609-73029628 | Msa0373890:CDS | 30.0% | |
| TAGAAACTATAAAGTGCAAG+AGG | - | chr3_1:73029649-73029668 | Msa0373890:CDS | 30.0% | |
| !! | AATGTCAGTGAATGCTTTTT+GGG | - | chr3_1:73029712-73029731 | Msa0373890:intron | 30.0% |
| GTAAGGTTAACATAATCTTG+GGG | + | chr3_1:73029848-73029867 | None:intergenic | 30.0% | |
| GGTAAGGTTAACATAATCTT+GGG | + | chr3_1:73029849-73029868 | None:intergenic | 30.0% | |
| AAGATTATGTTAACCTTACC+CGG | - | chr3_1:73029849-73029868 | Msa0373890:intron | 30.0% | |
| !!! | TTTTTTGTCTCTCCAAATTG+CGG | - | chr3_1:73028932-73028951 | Msa0373890:CDS | 30.0% |
| GATGACAATGAATAAGTTCT+AGG | + | chr3_1:73028977-73028996 | None:intergenic | 30.0% | |
| !!! | CCTTACTATTATTTTGATCC+AGG | + | chr3_1:73028999-73029018 | None:intergenic | 30.0% |
| CCTGGATCAAAATAATAGTA+AGG | - | chr3_1:73028996-73029015 | Msa0373890:CDS | 30.0% | |
| ! | TAGTAAGGTTGATTATTGGT+TGG | - | chr3_1:73029011-73029030 | Msa0373890:CDS | 30.0% |
| ! | ATTGGTTGGTATTTGAAACT+TGG | - | chr3_1:73029025-73029044 | Msa0373890:CDS | 30.0% |
| TTGTTCAGCATCAAATAACT+CGG | + | chr3_1:73029141-73029160 | None:intergenic | 30.0% | |
| AGTTATTTGATGCTGAACAA+TGG | - | chr3_1:73029141-73029160 | Msa0373890:CDS | 30.0% | |
| GTTATTTGATGCTGAACAAT+GGG | - | chr3_1:73029142-73029161 | Msa0373890:CDS | 30.0% | |
| TGACATATTTGCTCAATACA+TGG | - | chr3_1:73029499-73029518 | Msa0373890:CDS | 30.0% | |
| AACACAATGTCCTTTATATC+AGG | + | chr3_1:73029599-73029618 | None:intergenic | 30.0% | |
| ACATTGTGTTTAAGCACTTT+GGG | - | chr3_1:73029609-73029628 | Msa0373890:CDS | 30.0% | |
| TAGAAACTATAAAGTGCAAG+AGG | - | chr3_1:73029649-73029668 | Msa0373890:CDS | 30.0% | |
| !! | AATGTCAGTGAATGCTTTTT+GGG | - | chr3_1:73029712-73029731 | Msa0373890:intron | 30.0% |
| GTAAGGTTAACATAATCTTG+GGG | + | chr3_1:73029848-73029867 | None:intergenic | 30.0% | |
| GGTAAGGTTAACATAATCTT+GGG | + | chr3_1:73029849-73029868 | None:intergenic | 30.0% | |
| AAGATTATGTTAACCTTACC+CGG | - | chr3_1:73029849-73029868 | Msa0373890:intron | 30.0% | |
| TTAAGATCTCTACTGTAGTC+TGG | - | chr3_1:73028902-73028921 | Msa0373890:CDS | 35.0% | |
| TAAGATCTCTACTGTAGTCT+GGG | - | chr3_1:73028903-73028922 | Msa0373890:CDS | 35.0% | |
| ! | TTTTTGTCTCTCCAAATTGC+GGG | - | chr3_1:73028933-73028952 | Msa0373890:CDS | 35.0% |
| GAACTTATTCATTGTCATCC+TGG | - | chr3_1:73028978-73028997 | Msa0373890:CDS | 35.0% | |
| TGAAACTTGGCAGATTATCA+AGG | - | chr3_1:73029038-73029057 | Msa0373890:CDS | 35.0% | |
| ! | AAATTACTATGTAGGTGTCG+TGG | + | chr3_1:73029109-73029128 | None:intergenic | 35.0% |
| TGATTGTGATATCTCATGGT+TGG | - | chr3_1:73029169-73029188 | Msa0373890:CDS | 35.0% | |
| GTTGCTTCTTTGTAAACCTA+AGG | + | chr3_1:73029237-73029256 | None:intergenic | 35.0% | |
| AGGTTTACAAAGAAGCAACA+TGG | - | chr3_1:73029238-73029257 | Msa0373890:CDS | 35.0% | |
| GGTTTACAAAGAAGCAACAT+GGG | - | chr3_1:73029239-73029258 | Msa0373890:CDS | 35.0% | |
| AGTAGTAAGCTTCAAGTGTA+TGG | + | chr3_1:73029295-73029314 | None:intergenic | 35.0% | |
| !!! | GCATGATGTGTCATTTCTTT+TGG | - | chr3_1:73029430-73029449 | Msa0373890:CDS | 35.0% |
| !! | TTTCTTTTGGAGAAGCTTCA+AGG | - | chr3_1:73029443-73029462 | Msa0373890:CDS | 35.0% |
| !! | TTCTTTTGGAGAAGCTTCAA+GGG | - | chr3_1:73029444-73029463 | Msa0373890:CDS | 35.0% |
| TTTATATCAGGAGGAAACCT+AGG | + | chr3_1:73029587-73029606 | None:intergenic | 35.0% | |
| TAGGTTTCCTCCTGATATAA+AGG | - | chr3_1:73029586-73029605 | Msa0373890:CDS | 35.0% | |
| ACAATGTCCTTTATATCAGG+AGG | + | chr3_1:73029596-73029615 | None:intergenic | 35.0% | |
| GACATTGTGTTTAAGCACTT+TGG | - | chr3_1:73029608-73029627 | Msa0373890:CDS | 35.0% | |
| !! | CAAAAAGCATTCACTGACAT+TGG | + | chr3_1:73029713-73029732 | None:intergenic | 35.0% |
| ! | CAATGTCAGTGAATGCTTTT+TGG | - | chr3_1:73029711-73029730 | Msa0373890:intron | 35.0% |
| !!! | GATGGGTTTTAAGAGCATTT+CGG | - | chr3_1:73029789-73029808 | Msa0373890:intron | 35.0% |
| GGGTAAGGTTAACATAATCT+TGG | + | chr3_1:73029850-73029869 | None:intergenic | 35.0% | |
| TTAAGATCTCTACTGTAGTC+TGG | - | chr3_1:73028902-73028921 | Msa0373890:CDS | 35.0% | |
| TAAGATCTCTACTGTAGTCT+GGG | - | chr3_1:73028903-73028922 | Msa0373890:CDS | 35.0% | |
| ! | TTTTTGTCTCTCCAAATTGC+GGG | - | chr3_1:73028933-73028952 | Msa0373890:CDS | 35.0% |
| GAACTTATTCATTGTCATCC+TGG | - | chr3_1:73028978-73028997 | Msa0373890:CDS | 35.0% | |
| TGAAACTTGGCAGATTATCA+AGG | - | chr3_1:73029038-73029057 | Msa0373890:CDS | 35.0% | |
| ! | AAATTACTATGTAGGTGTCG+TGG | + | chr3_1:73029109-73029128 | None:intergenic | 35.0% |
| TGATTGTGATATCTCATGGT+TGG | - | chr3_1:73029169-73029188 | Msa0373890:CDS | 35.0% | |
| GTTGCTTCTTTGTAAACCTA+AGG | + | chr3_1:73029237-73029256 | None:intergenic | 35.0% | |
| AGGTTTACAAAGAAGCAACA+TGG | - | chr3_1:73029238-73029257 | Msa0373890:CDS | 35.0% | |
| GGTTTACAAAGAAGCAACAT+GGG | - | chr3_1:73029239-73029258 | Msa0373890:CDS | 35.0% | |
| AGTAGTAAGCTTCAAGTGTA+TGG | + | chr3_1:73029295-73029314 | None:intergenic | 35.0% | |
| !!! | GCATGATGTGTCATTTCTTT+TGG | - | chr3_1:73029430-73029449 | Msa0373890:CDS | 35.0% |
| !! | TTTCTTTTGGAGAAGCTTCA+AGG | - | chr3_1:73029443-73029462 | Msa0373890:CDS | 35.0% |
| !! | TTCTTTTGGAGAAGCTTCAA+GGG | - | chr3_1:73029444-73029463 | Msa0373890:CDS | 35.0% |
| TTTATATCAGGAGGAAACCT+AGG | + | chr3_1:73029587-73029606 | None:intergenic | 35.0% | |
| TAGGTTTCCTCCTGATATAA+AGG | - | chr3_1:73029586-73029605 | Msa0373890:CDS | 35.0% | |
| ACAATGTCCTTTATATCAGG+AGG | + | chr3_1:73029596-73029615 | None:intergenic | 35.0% | |
| GACATTGTGTTTAAGCACTT+TGG | - | chr3_1:73029608-73029627 | Msa0373890:CDS | 35.0% | |
| !! | CAAAAAGCATTCACTGACAT+TGG | + | chr3_1:73029713-73029732 | None:intergenic | 35.0% |
| ! | CAATGTCAGTGAATGCTTTT+TGG | - | chr3_1:73029711-73029730 | Msa0373890:intron | 35.0% |
| !!! | GATGGGTTTTAAGAGCATTT+CGG | - | chr3_1:73029789-73029808 | Msa0373890:intron | 35.0% |
| GGGTAAGGTTAACATAATCT+TGG | + | chr3_1:73029850-73029869 | None:intergenic | 35.0% | |
| CAGGTGATTGTGATATCTCA+TGG | - | chr3_1:73029165-73029184 | Msa0373890:CDS | 40.0% | |
| TACAAAGAAGCAACATGGGT+TGG | - | chr3_1:73029243-73029262 | Msa0373890:CDS | 40.0% | |
| ! | ATATTGACTGGTCACAGTCT+AGG | - | chr3_1:73029368-73029387 | Msa0373890:CDS | 40.0% |
| TCATGCAACATCAATATCGC+AGG | + | chr3_1:73029416-73029435 | None:intergenic | 40.0% | |
| !! | TCTTTTGGAGAAGCTTCAAG+GGG | - | chr3_1:73029445-73029464 | Msa0373890:CDS | 40.0% |
| CTTCAAGGGGTTTACACATT+TGG | - | chr3_1:73029458-73029477 | Msa0373890:CDS | 40.0% | |
| ACATTTGGTCAACCAAGAGT+TGG | - | chr3_1:73029473-73029492 | Msa0373890:CDS | 40.0% | |
| CATTTGGTCAACCAAGAGTT+GGG | - | chr3_1:73029474-73029493 | Msa0373890:CDS | 40.0% | |
| ATTTGGTCAACCAAGAGTTG+GGG | - | chr3_1:73029475-73029494 | Msa0373890:CDS | 40.0% | |
| AATATGTCATCCCCAACTCT+TGG | + | chr3_1:73029488-73029507 | None:intergenic | 40.0% | |
| !! | ATGCTTTTTGGGAGCTCATA+AGG | - | chr3_1:73029723-73029742 | Msa0373890:intron | 40.0% |
| TTCACTATGGTGTCTAGGTA+TGG | - | chr3_1:73029749-73029768 | Msa0373890:intron | 40.0% | |
| TATGGACCTGAGTATCAAGA+GGG | - | chr3_1:73029767-73029786 | Msa0373890:intron | 40.0% | |
| !! | TTAAGAGCATTTCGGCTTGT+TGG | - | chr3_1:73029797-73029816 | Msa0373890:intron | 40.0% |
| TTATGTTAACCTTACCCGGT+TGG | - | chr3_1:73029853-73029872 | Msa0373890:intron | 40.0% | |
| TATGTTAACCTTACCCGGTT+GGG | - | chr3_1:73029854-73029873 | Msa0373890:intron | 40.0% | |
| TCGAGAAAATTGATCCCAAC+CGG | + | chr3_1:73029871-73029890 | None:intergenic | 40.0% | |
| CAGGTGATTGTGATATCTCA+TGG | - | chr3_1:73029165-73029184 | Msa0373890:CDS | 40.0% | |
| TACAAAGAAGCAACATGGGT+TGG | - | chr3_1:73029243-73029262 | Msa0373890:CDS | 40.0% | |
| ! | ATATTGACTGGTCACAGTCT+AGG | - | chr3_1:73029368-73029387 | Msa0373890:CDS | 40.0% |
| TCATGCAACATCAATATCGC+AGG | + | chr3_1:73029416-73029435 | None:intergenic | 40.0% | |
| !! | TCTTTTGGAGAAGCTTCAAG+GGG | - | chr3_1:73029445-73029464 | Msa0373890:CDS | 40.0% |
| CTTCAAGGGGTTTACACATT+TGG | - | chr3_1:73029458-73029477 | Msa0373890:CDS | 40.0% | |
| ACATTTGGTCAACCAAGAGT+TGG | - | chr3_1:73029473-73029492 | Msa0373890:CDS | 40.0% | |
| CATTTGGTCAACCAAGAGTT+GGG | - | chr3_1:73029474-73029493 | Msa0373890:CDS | 40.0% | |
| ATTTGGTCAACCAAGAGTTG+GGG | - | chr3_1:73029475-73029494 | Msa0373890:CDS | 40.0% | |
| AATATGTCATCCCCAACTCT+TGG | + | chr3_1:73029488-73029507 | None:intergenic | 40.0% | |
| !! | ATGCTTTTTGGGAGCTCATA+AGG | - | chr3_1:73029723-73029742 | Msa0373890:intron | 40.0% |
| TTCACTATGGTGTCTAGGTA+TGG | - | chr3_1:73029749-73029768 | Msa0373890:intron | 40.0% | |
| TATGGACCTGAGTATCAAGA+GGG | - | chr3_1:73029767-73029786 | Msa0373890:intron | 40.0% | |
| !! | TTAAGAGCATTTCGGCTTGT+TGG | - | chr3_1:73029797-73029816 | Msa0373890:intron | 40.0% |
| TTATGTTAACCTTACCCGGT+TGG | - | chr3_1:73029853-73029872 | Msa0373890:intron | 40.0% | |
| TATGTTAACCTTACCCGGTT+GGG | - | chr3_1:73029854-73029873 | Msa0373890:intron | 40.0% | |
| TCGAGAAAATTGATCCCAAC+CGG | + | chr3_1:73029871-73029890 | None:intergenic | 40.0% | |
| AGCGTACATGTATCGCATGT+GGG | - | chr3_1:73028877-73028896 | Msa0373890:CDS | 45.0% | |
| TTTGATGCTGAACAATGGGC+AGG | - | chr3_1:73029146-73029165 | Msa0373890:CDS | 45.0% | |
| ! | GCATGAGTTTTTCCAAGTCC+AGG | + | chr3_1:73029200-73029219 | None:intergenic | 45.0% |
| GGACTTGGAAAAACTCATGC+TGG | - | chr3_1:73029200-73029219 | Msa0373890:CDS | 45.0% | |
| ! | GCTGGTTTCATGAAAGCCTT+AGG | - | chr3_1:73029218-73029237 | Msa0373890:CDS | 45.0% |
| GCTCATAAGGAGCTTCACTA+TGG | - | chr3_1:73029736-73029755 | Msa0373890:intron | 45.0% | |
| GTATGGACCTGAGTATCAAG+AGG | - | chr3_1:73029766-73029785 | Msa0373890:intron | 45.0% | |
| ACCTGAGTATCAAGAGGGAT+GGG | - | chr3_1:73029772-73029791 | Msa0373890:intron | 45.0% | |
| AAATTGATCCCAACCGGGTA+AGG | + | chr3_1:73029865-73029884 | None:intergenic | 45.0% | |
| CGAGAAAATTGATCCCAACC+GGG | + | chr3_1:73029870-73029889 | None:intergenic | 45.0% | |
| AGCGTACATGTATCGCATGT+GGG | - | chr3_1:73028877-73028896 | Msa0373890:CDS | 45.0% | |
| TTTGATGCTGAACAATGGGC+AGG | - | chr3_1:73029146-73029165 | Msa0373890:CDS | 45.0% | |
| ! | GCATGAGTTTTTCCAAGTCC+AGG | + | chr3_1:73029200-73029219 | None:intergenic | 45.0% |
| GGACTTGGAAAAACTCATGC+TGG | - | chr3_1:73029200-73029219 | Msa0373890:CDS | 45.0% | |
| ! | GCTGGTTTCATGAAAGCCTT+AGG | - | chr3_1:73029218-73029237 | Msa0373890:CDS | 45.0% |
| GCTCATAAGGAGCTTCACTA+TGG | - | chr3_1:73029736-73029755 | Msa0373890:intron | 45.0% | |
| GTATGGACCTGAGTATCAAG+AGG | - | chr3_1:73029766-73029785 | Msa0373890:intron | 45.0% | |
| ACCTGAGTATCAAGAGGGAT+GGG | - | chr3_1:73029772-73029791 | Msa0373890:intron | 45.0% | |
| AAATTGATCCCAACCGGGTA+AGG | + | chr3_1:73029865-73029884 | None:intergenic | 45.0% | |
| CGAGAAAATTGATCCCAACC+GGG | + | chr3_1:73029870-73029889 | None:intergenic | 45.0% | |
| GAGCGTACATGTATCGCATG+TGG | - | chr3_1:73028876-73028895 | Msa0373890:CDS | 50.0% | |
| TCTTCCTCGTACCCGCAATT+TGG | + | chr3_1:73028947-73028966 | None:intergenic | 50.0% | |
| ATCTCATGGTTGGAGCTTCC+TGG | - | chr3_1:73029179-73029198 | Msa0373890:CDS | 50.0% | |
| ! | TTGACTGGTCACAGTCTAGG+TGG | - | chr3_1:73029371-73029390 | Msa0373890:CDS | 50.0% |
| GGAGCTTCACTATGGTGTCT+AGG | - | chr3_1:73029744-73029763 | Msa0373890:intron | 50.0% | |
| GACCTGAGTATCAAGAGGGA+TGG | - | chr3_1:73029771-73029790 | Msa0373890:intron | 50.0% | |
| ACCCATCCCTCTTGATACTC+AGG | + | chr3_1:73029776-73029795 | None:intergenic | 50.0% | |
| !! | CTTGTTGGCTTACTAGTGCC+TGG | - | chr3_1:73029812-73029831 | Msa0373890:intron | 50.0% |
| TCTTGGGGTAAGTGTACTCC+AGG | + | chr3_1:73029833-73029852 | None:intergenic | 50.0% | |
| GAGCGTACATGTATCGCATG+TGG | - | chr3_1:73028876-73028895 | Msa0373890:CDS | 50.0% | |
| TCTTCCTCGTACCCGCAATT+TGG | + | chr3_1:73028947-73028966 | None:intergenic | 50.0% | |
| ATCTCATGGTTGGAGCTTCC+TGG | - | chr3_1:73029179-73029198 | Msa0373890:CDS | 50.0% | |
| ! | TTGACTGGTCACAGTCTAGG+TGG | - | chr3_1:73029371-73029390 | Msa0373890:CDS | 50.0% |
| GGAGCTTCACTATGGTGTCT+AGG | - | chr3_1:73029744-73029763 | Msa0373890:intron | 50.0% | |
| GACCTGAGTATCAAGAGGGA+TGG | - | chr3_1:73029771-73029790 | Msa0373890:intron | 50.0% | |
| ACCCATCCCTCTTGATACTC+AGG | + | chr3_1:73029776-73029795 | None:intergenic | 50.0% | |
| !! | CTTGTTGGCTTACTAGTGCC+TGG | - | chr3_1:73029812-73029831 | Msa0373890:intron | 50.0% |
| TCTTGGGGTAAGTGTACTCC+AGG | + | chr3_1:73029833-73029852 | None:intergenic | 50.0% | |
| CTCTCCAAATTGCGGGTACG+AGG | - | chr3_1:73028940-73028959 | Msa0373890:CDS | 55.0% | |
| TGGTTGGAGCTTCCTGGACT+TGG | - | chr3_1:73029185-73029204 | Msa0373890:CDS | 55.0% | |
| CTCTCCAAATTGCGGGTACG+AGG | - | chr3_1:73028940-73028959 | Msa0373890:CDS | 55.0% | |
| TGGTTGGAGCTTCCTGGACT+TGG | - | chr3_1:73029185-73029204 | Msa0373890:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 73028866 | 73029901 | 73028866 | ID=Msa0373890;Name=Msa0373890 |
| chr3_1 | mRNA | 73028866 | 73029901 | 73028866 | ID=Msa0373890-mRNA-1;Parent=Msa0373890;Name=Msa0373890-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.5|1|1|2|0|284 |
| chr3_1 | exon | 73029898 | 73029901 | 73029898 | ID=Msa0373890-mRNA-1:exon:16547;Parent=Msa0373890-mRNA-1 |
| chr3_1 | exon | 73028866 | 73029716 | 73028866 | ID=Msa0373890-mRNA-1:exon:16546;Parent=Msa0373890-mRNA-1 |
| chr3_1 | CDS | 73029898 | 73029901 | 73029898 | ID=Msa0373890-mRNA-1:cds;Parent=Msa0373890-mRNA-1 |
| chr3_1 | CDS | 73028866 | 73029716 | 73028866 | ID=Msa0373890-mRNA-1:cds;Parent=Msa0373890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
