AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0374150


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374150 MtrunA17_Chr3g0124361 89.175 194 10 3 1 193 1 184 3.93e-125 351
Msa0374150 MtrunA17_Chr3g0115551 33.898 177 74 7 1 177 1 134 2.05e-21 86.3
Msa0374150 MtrunA17_Chr8g0336591 53.571 56 25 1 127 181 32 87 2.14e-15 69.3
Msa0374150 MtrunA17_Chr4g0055191 61.702 47 18 0 131 177 71 117 5.80e-15 69.3
Msa0374150 MtrunA17_Chr5g0400051 50.704 71 29 2 131 196 83 152 1.38e-14 68.6
Msa0374150 MtrunA17_Chr8g0344991 44.286 70 36 1 133 202 39 105 6.96e-14 65.5
Msa0374150 MtrunA17_Chr4g0070221 54.902 51 22 1 127 177 172 221 9.15e-12 62.4
Msa0374150 MtrunA17_Chr2g0295651 58.537 41 17 0 133 173 64 104 9.79e-12 60.5
Msa0374150 MtrunA17_Chr2g0301141 40.741 81 45 2 101 179 152 231 1.57e-11 61.6
Msa0374150 MtrunA17_Chr4g0067541 43.548 62 34 1 114 175 44 104 4.42e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374150 AT1G78020.1 33.010 206 94 7 1 206 1 162 1.57e-23 92.4
Msa0374150 AT1G22160.1 35.196 179 61 8 1 179 1 124 2.20e-19 81.3
Msa0374150 AT4G39795.1 45.833 72 36 1 112 183 55 123 6.08e-17 74.3
Msa0374150 AT4G17670.1 62.000 50 19 0 128 177 71 120 1.35e-16 73.9
Msa0374150 AT5G65040.1 51.389 72 31 1 114 185 42 109 1.63e-16 72.8
Msa0374150 AT2G44670.1 62.000 50 18 1 131 179 14 63 6.14e-16 70.5
Msa0374150 AT5G47060.2 63.830 47 17 0 131 177 95 141 5.87e-15 70.1
Msa0374150 AT5G47060.1 63.830 47 17 0 131 177 95 141 5.87e-15 70.1
Msa0374150 AT1G53885.1 48.529 68 33 1 109 176 20 85 1.78e-12 62.4
Msa0374150 AT1G53903.1 48.529 68 33 1 109 176 20 85 1.78e-12 62.4
Msa0374150 AT1G19200.1 49.091 55 27 1 126 180 143 196 4.97e-11 60.1
Msa0374150 AT1G74940.1 45.902 61 32 1 132 192 149 208 5.45e-11 60.1
Msa0374150 AT5G49120.1 39.130 69 42 0 105 173 40 108 5.83e-11 58.9
Msa0374150 AT1G19200.2 49.091 55 27 1 126 180 156 209 6.13e-11 60.1

Find 51 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCTTGTTCTTCTCATAAT+TGG 0.156033 3_1:+73408034 None:intergenic
CTTCCTCATGATGGGATTCT+AGG 0.211376 3_1:+73407960 None:intergenic
AATAATATTGTTAGTGTTTG+TGG 0.326456 3_1:+73407748 None:intergenic
AGTTACAGAGGCCACAAGTT+TGG 0.349033 3_1:+73407660 None:intergenic
ATGATGGGATTCTAGGTTGT+TGG 0.366587 3_1:+73407967 None:intergenic
ACAAGCAGCAGTAGAAGCTT+TGG 0.372677 3_1:+73407038 None:intergenic
TCTAGGTTGTTGGTTTGATC+AGG 0.381479 3_1:+73407977 None:intergenic
ATTGTTAGTGTTTGTGGCTG+TGG 0.394454 3_1:+73407754 None:intergenic
TGTAACTGTCGTTTGGCTCC+TGG 0.404985 3_1:-73407644 Msa0374150:CDS
TACACGGTGGTCTTCTTTGT+TGG 0.433148 3_1:+73407083 None:intergenic
ACACATTAAAAGTGAATTAA+CGG 0.437387 3_1:-73407828 Msa0374150:CDS
TGGCCTCTGTAACTGTCGTT+TGG 0.455985 3_1:-73407651 Msa0374150:CDS
CTTGTTCTTCTCATAATTGG+TGG 0.464977 3_1:+73408037 None:intergenic
CACTGATTCTTCCTCATGAT+GGG 0.470672 3_1:+73407952 None:intergenic
GATTAGAAGAAGATGTTGCT+TGG 0.489313 3_1:-73408073 None:intergenic
TCACTGATTCTTCCTCATGA+TGG 0.491322 3_1:+73407951 None:intergenic
AAGACAAAAGAAAAGAAAAG+TGG 0.499141 3_1:-73407119 Msa0374150:CDS
GTTCCCATCACAACCGTATG+TGG 0.501901 3_1:+73407857 None:intergenic
GAATCCACATACGGTTGTGA+TGG 0.509624 3_1:-73407861 Msa0374150:CDS
TGATCATCATGGTGTGGATG+TGG 0.510086 3_1:+73407905 None:intergenic
GTGGCTGTGGCTGTGTGTGA+AGG 0.511685 3_1:+73407767 None:intergenic
GGTGGCTGATGAACGTTTAG+TGG 0.522207 3_1:-73407807 Msa0374150:CDS
GTCGAGACATCTACATGTAT+AGG 0.522956 3_1:-73407622 Msa0374150:intron
ATCAGGTGGTTGCATGTCCA+CGG 0.524115 3_1:+73407994 None:intergenic
AAGAAAAGAAAAGTGGAAGA+TGG 0.529987 3_1:-73407112 Msa0374150:CDS
CTTCTCATAATTGGTGGTCG+AGG 0.540724 3_1:+73408043 None:intergenic
AGGTTGTTGGTTTGATCAGG+TGG 0.542107 3_1:+73407980 None:intergenic
TGGCTGTGGCTGTGTGTGAA+GGG 0.543537 3_1:+73407768 None:intergenic
TGCCATGTTCTTGATCATCA+TGG 0.545211 3_1:+73407894 None:intergenic
AGCAGTAGAAGCTTTGGCAG+TGG 0.548192 3_1:+73407044 None:intergenic
GCTTTGGCAGTGGCCGTGCA+CGG 0.562038 3_1:+73407054 None:intergenic
TCATGTGCACTCACACTCAA+AGG 0.576185 3_1:+73407710 None:intergenic
CCGTGTATCACCACCGTGCA+CGG 0.577796 3_1:-73407067 Msa0374150:CDS
AATCCACATACGGTTGTGAT+GGG 0.578470 3_1:-73407860 Msa0374150:CDS
CCTCACTTTCTCCAAACTTG+TGG 0.579241 3_1:-73407671 Msa0374150:CDS
CCGTGCACGGTGGTGATACA+CGG 0.602872 3_1:+73407067 None:intergenic
CACCATGATGATCAAGAACA+TGG 0.605152 3_1:-73407896 Msa0374150:CDS
TGGTGTGGATGTGGCTGCAG+AGG 0.618105 3_1:+73407914 None:intergenic
GTGGCTGATGAACGTTTAGT+GGG 0.621978 3_1:-73407806 Msa0374150:CDS
CCACAAGTTTGGAGAAAGTG+AGG 0.629285 3_1:+73407671 None:intergenic
TGTTCTTGATCATCATGGTG+TGG 0.629577 3_1:+73407899 None:intergenic
CAACATCAAGAATCCACATA+CGG 0.631823 3_1:-73407870 Msa0374150:CDS
CATGAGTGGTGGTTTGTCCG+TGG 0.637137 3_1:-73408011 Msa0374150:CDS
AGAAGAACAAGAAGCATGAG+TGG 0.643370 3_1:-73408025 Msa0374150:CDS
TACATGTAGATGTCTCGACC+AGG 0.645212 3_1:+73407626 None:intergenic
CAACCTAGAATCCCATCATG+AGG 0.662994 3_1:-73407963 Msa0374150:CDS
TTGGCAGTGGCCGTGCACGG+TGG 0.682224 3_1:+73407057 None:intergenic
GAGCCAAACGACAGTTACAG+AGG 0.685876 3_1:+73407648 None:intergenic
AGAACAAGAAGCATGAGTGG+TGG 0.691730 3_1:-73408022 Msa0374150:CDS
CATTAAAAGTGAATTAACGG+TGG 0.697236 3_1:-73407825 Msa0374150:CDS
TGCACGGTGGTGATACACGG+TGG 0.754526 3_1:+73407070 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGAATAATAGAAAAAAT+TGG + chr3_1:73407504-73407523 None:intergenic 10.0%
!!! TTAATTAATTTTTTGTTTAG+AGG - chr3_1:73407828-73407847 Msa0374150:CDS 10.0%
!! TAATGAATAATAGAAAAAAT+TGG + chr3_1:73407504-73407523 None:intergenic 10.0%
!!! TTAATTAATTTTTTGTTTAG+AGG - chr3_1:73407828-73407847 Msa0374150:CDS 10.0%
!! GTTAGTTAGTATAATTAATT+TGG - chr3_1:73407859-73407878 Msa0374150:CDS 15.0%
!!! AAAGAAAATTATTGATTTCA+GGG - chr3_1:73407903-73407922 Msa0374150:CDS 15.0%
!! GTTAGTTAGTATAATTAATT+TGG - chr3_1:73407859-73407878 Msa0374150:CDS 15.0%
!!! AAAGAAAATTATTGATTTCA+GGG - chr3_1:73407903-73407922 Msa0374150:CDS 15.0%
!! ACACATTAAAAGTGAATTAA+CGG - chr3_1:73407265-73407284 Msa0374150:intron 20.0%
!! AATAATATTGTTAGTGTTTG+TGG + chr3_1:73407348-73407367 None:intergenic 20.0%
!! AATAGTATTAATTCTTCCTT+TGG + chr3_1:73407730-73407749 None:intergenic 20.0%
!!! ATTTTTTGTTTAGAGGAAAT+TGG - chr3_1:73407835-73407854 Msa0374150:CDS 20.0%
!!! TTTTTTGTTTAGAGGAAATT+GGG - chr3_1:73407836-73407855 Msa0374150:CDS 20.0%
!!! GAAAGAAAATTATTGATTTC+AGG - chr3_1:73407902-73407921 Msa0374150:CDS 20.0%
!!! AAGAAAATTATTGATTTCAG+GGG - chr3_1:73407904-73407923 Msa0374150:CDS 20.0%
!! ACACATTAAAAGTGAATTAA+CGG - chr3_1:73407265-73407284 Msa0374150:intron 20.0%
!! AATAATATTGTTAGTGTTTG+TGG + chr3_1:73407348-73407367 None:intergenic 20.0%
!! AATAGTATTAATTCTTCCTT+TGG + chr3_1:73407730-73407749 None:intergenic 20.0%
!!! ATTTTTTGTTTAGAGGAAAT+TGG - chr3_1:73407835-73407854 Msa0374150:CDS 20.0%
!!! TTTTTTGTTTAGAGGAAATT+GGG - chr3_1:73407836-73407855 Msa0374150:CDS 20.0%
!!! GAAAGAAAATTATTGATTTC+AGG - chr3_1:73407902-73407921 Msa0374150:CDS 20.0%
!!! AAGAAAATTATTGATTTCAG+GGG - chr3_1:73407904-73407923 Msa0374150:CDS 20.0%
!! TGACTTTGATATTCTTGTTT+AGG + chr3_1:73407611-73407630 None:intergenic 25.0%
! TAAACAAGAATATCAAAGTC+AGG - chr3_1:73407610-73407629 Msa0374150:intron 25.0%
!!! ACTTGTTATAAGAGTTAGTT+AGG - chr3_1:73407637-73407656 Msa0374150:CDS 25.0%
! CTGAAAATAAAGAGACAATT+AGG + chr3_1:73407700-73407719 None:intergenic 25.0%
!!! TTTTTGTTTAGAGGAAATTG+GGG - chr3_1:73407837-73407856 Msa0374150:CDS 25.0%
! AAGACAAAAGAAAAGAAAAG+TGG - chr3_1:73407974-73407993 Msa0374150:CDS 25.0%
!! TGACTTTGATATTCTTGTTT+AGG + chr3_1:73407611-73407630 None:intergenic 25.0%
! TAAACAAGAATATCAAAGTC+AGG - chr3_1:73407610-73407629 Msa0374150:intron 25.0%
!!! ACTTGTTATAAGAGTTAGTT+AGG - chr3_1:73407637-73407656 Msa0374150:CDS 25.0%
! CTGAAAATAAAGAGACAATT+AGG + chr3_1:73407700-73407719 None:intergenic 25.0%
!!! TTTTTGTTTAGAGGAAATTG+GGG - chr3_1:73407837-73407856 Msa0374150:CDS 25.0%
! AAGACAAAAGAAAAGAAAAG+TGG - chr3_1:73407974-73407993 Msa0374150:CDS 25.0%
CTTCTTGTTCTTCTCATAAT+TGG + chr3_1:73407062-73407081 None:intergenic 30.0%
CATTAAAAGTGAATTAACGG+TGG - chr3_1:73407268-73407287 Msa0374150:intron 30.0%
!! TATTTTCAGTATCGAACCAA+AGG - chr3_1:73407711-73407730 Msa0374150:CDS 30.0%
TTCATTCTAGTAGTTTGACT+AGG - chr3_1:73407751-73407770 Msa0374150:CDS 30.0%
AAGAAAAGAAAAGTGGAAGA+TGG - chr3_1:73407981-73408000 Msa0374150:CDS 30.0%
CTTCTTGTTCTTCTCATAAT+TGG + chr3_1:73407062-73407081 None:intergenic 30.0%
CATTAAAAGTGAATTAACGG+TGG - chr3_1:73407268-73407287 Msa0374150:intron 30.0%
!! TATTTTCAGTATCGAACCAA+AGG - chr3_1:73407711-73407730 Msa0374150:CDS 30.0%
TTCATTCTAGTAGTTTGACT+AGG - chr3_1:73407751-73407770 Msa0374150:CDS 30.0%
AAGAAAAGAAAAGTGGAAGA+TGG - chr3_1:73407981-73408000 Msa0374150:CDS 30.0%
CTTGTTCTTCTCATAATTGG+TGG + chr3_1:73407059-73407078 None:intergenic 35.0%
CAACATCAAGAATCCACATA+CGG - chr3_1:73407223-73407242 Msa0374150:intron 35.0%
AGACATCTACATGTATAGGT+AGG - chr3_1:73407475-73407494 Msa0374150:intron 35.0%
! AGATACAGCATTTTGCAGTT+TGG - chr3_1:73407927-73407946 Msa0374150:CDS 35.0%
CTTGTTCTTCTCATAATTGG+TGG + chr3_1:73407059-73407078 None:intergenic 35.0%
CAACATCAAGAATCCACATA+CGG - chr3_1:73407223-73407242 Msa0374150:intron 35.0%
AGACATCTACATGTATAGGT+AGG - chr3_1:73407475-73407494 Msa0374150:intron 35.0%
! AGATACAGCATTTTGCAGTT+TGG - chr3_1:73407927-73407946 Msa0374150:CDS 35.0%
! AGAAGAACAAGAAGCATGAG+TGG - chr3_1:73407068-73407087 Msa0374150:CDS 40.0%
!! TCTAGGTTGTTGGTTTGATC+AGG + chr3_1:73407119-73407138 None:intergenic 40.0%
! ATGATGGGATTCTAGGTTGT+TGG + chr3_1:73407129-73407148 None:intergenic 40.0%
!! CACTGATTCTTCCTCATGAT+GGG + chr3_1:73407144-73407163 None:intergenic 40.0%
!! TCACTGATTCTTCCTCATGA+TGG + chr3_1:73407145-73407164 None:intergenic 40.0%
TGTTCTTGATCATCATGGTG+TGG + chr3_1:73407197-73407216 None:intergenic 40.0%
CACCATGATGATCAAGAACA+TGG - chr3_1:73407197-73407216 Msa0374150:intron 40.0%
TGCCATGTTCTTGATCATCA+TGG + chr3_1:73407202-73407221 None:intergenic 40.0%
AATCCACATACGGTTGTGAT+GGG - chr3_1:73407233-73407252 Msa0374150:intron 40.0%
ATTGTTAGTGTTTGTGGCTG+TGG + chr3_1:73407342-73407361 None:intergenic 40.0%
GTCGAGACATCTACATGTAT+AGG - chr3_1:73407471-73407490 Msa0374150:intron 40.0%
TAATCCGGAGTTCAGTCAAA+GGG - chr3_1:73407577-73407596 Msa0374150:intron 40.0%
! TTTTCCCTTTGACTGAACTC+CGG + chr3_1:73407584-73407603 None:intergenic 40.0%
!! ATTTTGCAGTTTGGAGTGCA+GGG - chr3_1:73407936-73407955 Msa0374150:CDS 40.0%
! AGAAGAACAAGAAGCATGAG+TGG - chr3_1:73407068-73407087 Msa0374150:CDS 40.0%
!! TCTAGGTTGTTGGTTTGATC+AGG + chr3_1:73407119-73407138 None:intergenic 40.0%
! ATGATGGGATTCTAGGTTGT+TGG + chr3_1:73407129-73407148 None:intergenic 40.0%
!! CACTGATTCTTCCTCATGAT+GGG + chr3_1:73407144-73407163 None:intergenic 40.0%
!! TCACTGATTCTTCCTCATGA+TGG + chr3_1:73407145-73407164 None:intergenic 40.0%
TGTTCTTGATCATCATGGTG+TGG + chr3_1:73407197-73407216 None:intergenic 40.0%
CACCATGATGATCAAGAACA+TGG - chr3_1:73407197-73407216 Msa0374150:intron 40.0%
TGCCATGTTCTTGATCATCA+TGG + chr3_1:73407202-73407221 None:intergenic 40.0%
AATCCACATACGGTTGTGAT+GGG - chr3_1:73407233-73407252 Msa0374150:intron 40.0%
ATTGTTAGTGTTTGTGGCTG+TGG + chr3_1:73407342-73407361 None:intergenic 40.0%
GTCGAGACATCTACATGTAT+AGG - chr3_1:73407471-73407490 Msa0374150:intron 40.0%
TAATCCGGAGTTCAGTCAAA+GGG - chr3_1:73407577-73407596 Msa0374150:intron 40.0%
! TTTTCCCTTTGACTGAACTC+CGG + chr3_1:73407584-73407603 None:intergenic 40.0%
!! ATTTTGCAGTTTGGAGTGCA+GGG - chr3_1:73407936-73407955 Msa0374150:CDS 40.0%
! CTTCTCATAATTGGTGGTCG+AGG + chr3_1:73407053-73407072 None:intergenic 45.0%
! AGAACAAGAAGCATGAGTGG+TGG - chr3_1:73407071-73407090 Msa0374150:CDS 45.0%
!! AGGTTGTTGGTTTGATCAGG+TGG + chr3_1:73407116-73407135 None:intergenic 45.0%
CAACCTAGAATCCCATCATG+AGG - chr3_1:73407130-73407149 Msa0374150:CDS 45.0%
! CTTCCTCATGATGGGATTCT+AGG + chr3_1:73407136-73407155 None:intergenic 45.0%
TGATCATCATGGTGTGGATG+TGG + chr3_1:73407191-73407210 None:intergenic 45.0%
GAATCCACATACGGTTGTGA+TGG - chr3_1:73407232-73407251 Msa0374150:intron 45.0%
GTGGCTGATGAACGTTTAGT+GGG - chr3_1:73407287-73407306 Msa0374150:intron 45.0%
TCATGTGCACTCACACTCAA+AGG + chr3_1:73407386-73407405 None:intergenic 45.0%
CCACAAGTTTGGAGAAAGTG+AGG + chr3_1:73407425-73407444 None:intergenic 45.0%
CCTCACTTTCTCCAAACTTG+TGG - chr3_1:73407422-73407441 Msa0374150:intron 45.0%
AGTTACAGAGGCCACAAGTT+TGG + chr3_1:73407436-73407455 None:intergenic 45.0%
TACATGTAGATGTCTCGACC+AGG + chr3_1:73407470-73407489 None:intergenic 45.0%
TGTAAACCCTACTCTGCCTA+GGG - chr3_1:73407538-73407557 Msa0374150:intron 45.0%
GTAATCCGGAGTTCAGTCAA+AGG - chr3_1:73407576-73407595 Msa0374150:intron 45.0%
!! CATTTTGCAGTTTGGAGTGC+AGG - chr3_1:73407935-73407954 Msa0374150:CDS 45.0%
TACACGGTGGTCTTCTTTGT+TGG + chr3_1:73408013-73408032 None:intergenic 45.0%
ACAAGCAGCAGTAGAAGCTT+TGG + chr3_1:73408058-73408077 None:intergenic 45.0%
! CTTCTCATAATTGGTGGTCG+AGG + chr3_1:73407053-73407072 None:intergenic 45.0%
! AGAACAAGAAGCATGAGTGG+TGG - chr3_1:73407071-73407090 Msa0374150:CDS 45.0%
!! AGGTTGTTGGTTTGATCAGG+TGG + chr3_1:73407116-73407135 None:intergenic 45.0%
CAACCTAGAATCCCATCATG+AGG - chr3_1:73407130-73407149 Msa0374150:CDS 45.0%
! CTTCCTCATGATGGGATTCT+AGG + chr3_1:73407136-73407155 None:intergenic 45.0%
TGATCATCATGGTGTGGATG+TGG + chr3_1:73407191-73407210 None:intergenic 45.0%
GAATCCACATACGGTTGTGA+TGG - chr3_1:73407232-73407251 Msa0374150:intron 45.0%
GTGGCTGATGAACGTTTAGT+GGG - chr3_1:73407287-73407306 Msa0374150:intron 45.0%
TCATGTGCACTCACACTCAA+AGG + chr3_1:73407386-73407405 None:intergenic 45.0%
CCACAAGTTTGGAGAAAGTG+AGG + chr3_1:73407425-73407444 None:intergenic 45.0%
CCTCACTTTCTCCAAACTTG+TGG - chr3_1:73407422-73407441 Msa0374150:intron 45.0%
AGTTACAGAGGCCACAAGTT+TGG + chr3_1:73407436-73407455 None:intergenic 45.0%
TACATGTAGATGTCTCGACC+AGG + chr3_1:73407470-73407489 None:intergenic 45.0%
TGTAAACCCTACTCTGCCTA+GGG - chr3_1:73407538-73407557 Msa0374150:intron 45.0%
GTAATCCGGAGTTCAGTCAA+AGG - chr3_1:73407576-73407595 Msa0374150:intron 45.0%
!! CATTTTGCAGTTTGGAGTGC+AGG - chr3_1:73407935-73407954 Msa0374150:CDS 45.0%
TACACGGTGGTCTTCTTTGT+TGG + chr3_1:73408013-73408032 None:intergenic 45.0%
ACAAGCAGCAGTAGAAGCTT+TGG + chr3_1:73408058-73408077 None:intergenic 45.0%
ATCAGGTGGTTGCATGTCCA+CGG + chr3_1:73407102-73407121 None:intergenic 50.0%
GTTCCCATCACAACCGTATG+TGG + chr3_1:73407239-73407258 None:intergenic 50.0%
GGTGGCTGATGAACGTTTAG+TGG - chr3_1:73407286-73407305 Msa0374150:intron 50.0%
TGGCCTCTGTAACTGTCGTT+TGG - chr3_1:73407442-73407461 Msa0374150:intron 50.0%
GAGCCAAACGACAGTTACAG+AGG + chr3_1:73407448-73407467 None:intergenic 50.0%
! TGTAACTGTCGTTTGGCTCC+TGG - chr3_1:73407449-73407468 Msa0374150:intron 50.0%
GTGTAAACCCTACTCTGCCT+AGG - chr3_1:73407537-73407556 Msa0374150:intron 50.0%
AAGGCAGAGCCTTCGTAATC+CGG - chr3_1:73407562-73407581 Msa0374150:intron 50.0%
GACTGAACTCCGGATTACGA+AGG + chr3_1:73407574-73407593 None:intergenic 50.0%
! AGCAGTAGAAGCTTTGGCAG+TGG + chr3_1:73408052-73408071 None:intergenic 50.0%
ATCAGGTGGTTGCATGTCCA+CGG + chr3_1:73407102-73407121 None:intergenic 50.0%
GTTCCCATCACAACCGTATG+TGG + chr3_1:73407239-73407258 None:intergenic 50.0%
GGTGGCTGATGAACGTTTAG+TGG - chr3_1:73407286-73407305 Msa0374150:intron 50.0%
TGGCCTCTGTAACTGTCGTT+TGG - chr3_1:73407442-73407461 Msa0374150:intron 50.0%
GAGCCAAACGACAGTTACAG+AGG + chr3_1:73407448-73407467 None:intergenic 50.0%
! TGTAACTGTCGTTTGGCTCC+TGG - chr3_1:73407449-73407468 Msa0374150:intron 50.0%
GTGTAAACCCTACTCTGCCT+AGG - chr3_1:73407537-73407556 Msa0374150:intron 50.0%
AAGGCAGAGCCTTCGTAATC+CGG - chr3_1:73407562-73407581 Msa0374150:intron 50.0%
GACTGAACTCCGGATTACGA+AGG + chr3_1:73407574-73407593 None:intergenic 50.0%
! AGCAGTAGAAGCTTTGGCAG+TGG + chr3_1:73408052-73408071 None:intergenic 50.0%
! CATGAGTGGTGGTTTGTCCG+TGG - chr3_1:73407082-73407101 Msa0374150:CDS 55.0%
TGGCTGTGGCTGTGTGTGAA+GGG + chr3_1:73407328-73407347 None:intergenic 55.0%
! CATGAGTGGTGGTTTGTCCG+TGG - chr3_1:73407082-73407101 Msa0374150:CDS 55.0%
TGGCTGTGGCTGTGTGTGAA+GGG + chr3_1:73407328-73407347 None:intergenic 55.0%
TGGTGTGGATGTGGCTGCAG+AGG + chr3_1:73407182-73407201 None:intergenic 60.0%
GTGGCTGTGGCTGTGTGTGA+AGG + chr3_1:73407329-73407348 None:intergenic 60.0%
ACCCTACTCTGCCTAGGGCA+AGG - chr3_1:73407543-73407562 Msa0374150:intron 60.0%
GCCTTGCCCTAGGCAGAGTA+GGG + chr3_1:73407547-73407566 None:intergenic 60.0%
TGCCTTGCCCTAGGCAGAGT+AGG + chr3_1:73407548-73407567 None:intergenic 60.0%
TGCACGGTGGTGATACACGG+TGG + chr3_1:73408026-73408045 None:intergenic 60.0%
CCGTGCACGGTGGTGATACA+CGG + chr3_1:73408029-73408048 None:intergenic 60.0%
CCGTGTATCACCACCGTGCA+CGG - chr3_1:73408026-73408045 Msa0374150:CDS 60.0%
TGGTGTGGATGTGGCTGCAG+AGG + chr3_1:73407182-73407201 None:intergenic 60.0%
GTGGCTGTGGCTGTGTGTGA+AGG + chr3_1:73407329-73407348 None:intergenic 60.0%
ACCCTACTCTGCCTAGGGCA+AGG - chr3_1:73407543-73407562 Msa0374150:intron 60.0%
GCCTTGCCCTAGGCAGAGTA+GGG + chr3_1:73407547-73407566 None:intergenic 60.0%
TGCCTTGCCCTAGGCAGAGT+AGG + chr3_1:73407548-73407567 None:intergenic 60.0%
TGCACGGTGGTGATACACGG+TGG + chr3_1:73408026-73408045 None:intergenic 60.0%
CCGTGCACGGTGGTGATACA+CGG + chr3_1:73408029-73408048 None:intergenic 60.0%
CCGTGTATCACCACCGTGCA+CGG - chr3_1:73408026-73408045 Msa0374150:CDS 60.0%
CGAAGGCTCTGCCTTGCCCT+AGG + chr3_1:73407557-73407576 None:intergenic 65.0%
GCTTTGGCAGTGGCCGTGCA+CGG + chr3_1:73408042-73408061 None:intergenic 65.0%
CGAAGGCTCTGCCTTGCCCT+AGG + chr3_1:73407557-73407576 None:intergenic 65.0%
GCTTTGGCAGTGGCCGTGCA+CGG + chr3_1:73408042-73408061 None:intergenic 65.0%
TTGGCAGTGGCCGTGCACGG+TGG + chr3_1:73408039-73408058 None:intergenic 70.0%
TTGGCAGTGGCCGTGCACGG+TGG + chr3_1:73408039-73408058 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 73407032 73408083 73407032 ID=Msa0374150;Name=Msa0374150
chr3_1 mRNA 73407032 73408083 73407032 ID=Msa0374150-mRNA-1;Parent=Msa0374150;Name=Msa0374150-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|206
chr3_1 exon 73407623 73408083 73407623 ID=Msa0374150-mRNA-1:exon:16717;Parent=Msa0374150-mRNA-1
chr3_1 exon 73407032 73407191 73407032 ID=Msa0374150-mRNA-1:exon:16716;Parent=Msa0374150-mRNA-1
chr3_1 CDS 73407623 73408083 73407623 ID=Msa0374150-mRNA-1:cds;Parent=Msa0374150-mRNA-1
chr3_1 CDS 73407032 73407191 73407032 ID=Msa0374150-mRNA-1:cds;Parent=Msa0374150-mRNA-1
Gene Sequence

>Msa0374150

ATGTTGCTTGGAAAACGTCCTCGACCACCAATTATGAGAAGAACAAGAAGCATGAGTGGTGGTTTGTCCGTGGACATGCAACCACCTGATCAAACCAACAACCTAGAATCCCATCATGAGGAAGAATCAGTGATGTCTCATCAGAATCCTCTGCAGCCACATCCACACCATGATGATCAAGAACATGGCATCAACATCAAGAATCCACATACGGTTGTGATGGGAACAGAAACACACATTAAAAGTGAATTAACGGTGGCTGATGAACGTTTAGTGGGTAGTGCAGTCATGTTCCCTTCACACACAGCCACAGCCACAAACACTAACAATATTATTAATCATAATAATAATCCTTTGAGTGTGAGTGCACATGATGTCATACATAGTACACCTCACTTTCTCCAAACTTGTGGCCTCTGTAACTGTCGTTTGGCTCCTGGTCGAGACATCTACATGTATAGGGGAGATACAGCATTTTGCAGTTTGGAGTGCAGGGAGCAACAAATAAAACAAGACAAAAGAAAAGAAAAGTGGAAGATGGCGTTCACCAACAAAGAAGACCACCGTGTATCACCACCGTGCACGGCCACTGCCAAAGCTTCTACTGCTGCTTGTACTTGA

Protein sequence

>Msa0374150

MLLGKRPRPPIMRRTRSMSGGLSVDMQPPDQTNNLESHHEEESVMSHQNPLQPHPHHDDQEHGINIKNPHTVVMGTETHIKSELTVADERLVGSAVMFPSHTATATNTNNIINHNNNPLSVSAHDVIHSTPHFLQTCGLCNCRLAPGRDIYMYRGDTAFCSLECREQQIKQDKRKEKWKMAFTNKEDHRVSPPCTATAKASTAACT*