Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0374150 | XP_003601999.1 | 89.175 | 194 | 10 | 3 | 1 | 193 | 1 | 184 | 4.27e-121 | 351 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0374150 | sp|Q9SGZ8|FLZ6_ARATH | 33.010 | 206 | 94 | 7 | 1 | 206 | 1 | 162 | 1.55e-22 | 92.4 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0374150 | G7J4C7 | 89.175 | 194 | 10 | 3 | 1 | 193 | 1 | 184 | 2.04e-121 | 351 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0374150 | Msa0436930 | 0.864170 | 1.474086e-64 | -8.615850e-47 |
Msa0374150 | Msa0469570 | 0.871558 | 6.236451e-67 | -8.615850e-47 |
Msa0374150 | Msa0664110 | 0.802502 | 5.442174e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0374150 | MtrunA17_Chr3g0124361 | 89.175 | 194 | 10 | 3 | 1 | 193 | 1 | 184 | 3.93e-125 | 351 |
Msa0374150 | MtrunA17_Chr3g0115551 | 33.898 | 177 | 74 | 7 | 1 | 177 | 1 | 134 | 2.05e-21 | 86.3 |
Msa0374150 | MtrunA17_Chr8g0336591 | 53.571 | 56 | 25 | 1 | 127 | 181 | 32 | 87 | 2.14e-15 | 69.3 |
Msa0374150 | MtrunA17_Chr4g0055191 | 61.702 | 47 | 18 | 0 | 131 | 177 | 71 | 117 | 5.80e-15 | 69.3 |
Msa0374150 | MtrunA17_Chr5g0400051 | 50.704 | 71 | 29 | 2 | 131 | 196 | 83 | 152 | 1.38e-14 | 68.6 |
Msa0374150 | MtrunA17_Chr8g0344991 | 44.286 | 70 | 36 | 1 | 133 | 202 | 39 | 105 | 6.96e-14 | 65.5 |
Msa0374150 | MtrunA17_Chr4g0070221 | 54.902 | 51 | 22 | 1 | 127 | 177 | 172 | 221 | 9.15e-12 | 62.4 |
Msa0374150 | MtrunA17_Chr2g0295651 | 58.537 | 41 | 17 | 0 | 133 | 173 | 64 | 104 | 9.79e-12 | 60.5 |
Msa0374150 | MtrunA17_Chr2g0301141 | 40.741 | 81 | 45 | 2 | 101 | 179 | 152 | 231 | 1.57e-11 | 61.6 |
Msa0374150 | MtrunA17_Chr4g0067541 | 43.548 | 62 | 34 | 1 | 114 | 175 | 44 | 104 | 4.42e-11 | 57.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0374150 | AT1G78020.1 | 33.010 | 206 | 94 | 7 | 1 | 206 | 1 | 162 | 1.57e-23 | 92.4 |
Msa0374150 | AT1G22160.1 | 35.196 | 179 | 61 | 8 | 1 | 179 | 1 | 124 | 2.20e-19 | 81.3 |
Msa0374150 | AT4G39795.1 | 45.833 | 72 | 36 | 1 | 112 | 183 | 55 | 123 | 6.08e-17 | 74.3 |
Msa0374150 | AT4G17670.1 | 62.000 | 50 | 19 | 0 | 128 | 177 | 71 | 120 | 1.35e-16 | 73.9 |
Msa0374150 | AT5G65040.1 | 51.389 | 72 | 31 | 1 | 114 | 185 | 42 | 109 | 1.63e-16 | 72.8 |
Msa0374150 | AT2G44670.1 | 62.000 | 50 | 18 | 1 | 131 | 179 | 14 | 63 | 6.14e-16 | 70.5 |
Msa0374150 | AT5G47060.2 | 63.830 | 47 | 17 | 0 | 131 | 177 | 95 | 141 | 5.87e-15 | 70.1 |
Msa0374150 | AT5G47060.1 | 63.830 | 47 | 17 | 0 | 131 | 177 | 95 | 141 | 5.87e-15 | 70.1 |
Msa0374150 | AT1G53885.1 | 48.529 | 68 | 33 | 1 | 109 | 176 | 20 | 85 | 1.78e-12 | 62.4 |
Msa0374150 | AT1G53903.1 | 48.529 | 68 | 33 | 1 | 109 | 176 | 20 | 85 | 1.78e-12 | 62.4 |
Msa0374150 | AT1G19200.1 | 49.091 | 55 | 27 | 1 | 126 | 180 | 143 | 196 | 4.97e-11 | 60.1 |
Msa0374150 | AT1G74940.1 | 45.902 | 61 | 32 | 1 | 132 | 192 | 149 | 208 | 5.45e-11 | 60.1 |
Msa0374150 | AT5G49120.1 | 39.130 | 69 | 42 | 0 | 105 | 173 | 40 | 108 | 5.83e-11 | 58.9 |
Msa0374150 | AT1G19200.2 | 49.091 | 55 | 27 | 1 | 126 | 180 | 156 | 209 | 6.13e-11 | 60.1 |
Find 51 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTGTTCTTCTCATAAT+TGG | 0.156033 | 3_1:+73408034 | None:intergenic |
CTTCCTCATGATGGGATTCT+AGG | 0.211376 | 3_1:+73407960 | None:intergenic |
AATAATATTGTTAGTGTTTG+TGG | 0.326456 | 3_1:+73407748 | None:intergenic |
AGTTACAGAGGCCACAAGTT+TGG | 0.349033 | 3_1:+73407660 | None:intergenic |
ATGATGGGATTCTAGGTTGT+TGG | 0.366587 | 3_1:+73407967 | None:intergenic |
ACAAGCAGCAGTAGAAGCTT+TGG | 0.372677 | 3_1:+73407038 | None:intergenic |
TCTAGGTTGTTGGTTTGATC+AGG | 0.381479 | 3_1:+73407977 | None:intergenic |
ATTGTTAGTGTTTGTGGCTG+TGG | 0.394454 | 3_1:+73407754 | None:intergenic |
TGTAACTGTCGTTTGGCTCC+TGG | 0.404985 | 3_1:-73407644 | Msa0374150:CDS |
TACACGGTGGTCTTCTTTGT+TGG | 0.433148 | 3_1:+73407083 | None:intergenic |
ACACATTAAAAGTGAATTAA+CGG | 0.437387 | 3_1:-73407828 | Msa0374150:CDS |
TGGCCTCTGTAACTGTCGTT+TGG | 0.455985 | 3_1:-73407651 | Msa0374150:CDS |
CTTGTTCTTCTCATAATTGG+TGG | 0.464977 | 3_1:+73408037 | None:intergenic |
CACTGATTCTTCCTCATGAT+GGG | 0.470672 | 3_1:+73407952 | None:intergenic |
GATTAGAAGAAGATGTTGCT+TGG | 0.489313 | 3_1:-73408073 | None:intergenic |
TCACTGATTCTTCCTCATGA+TGG | 0.491322 | 3_1:+73407951 | None:intergenic |
AAGACAAAAGAAAAGAAAAG+TGG | 0.499141 | 3_1:-73407119 | Msa0374150:CDS |
GTTCCCATCACAACCGTATG+TGG | 0.501901 | 3_1:+73407857 | None:intergenic |
GAATCCACATACGGTTGTGA+TGG | 0.509624 | 3_1:-73407861 | Msa0374150:CDS |
TGATCATCATGGTGTGGATG+TGG | 0.510086 | 3_1:+73407905 | None:intergenic |
GTGGCTGTGGCTGTGTGTGA+AGG | 0.511685 | 3_1:+73407767 | None:intergenic |
GGTGGCTGATGAACGTTTAG+TGG | 0.522207 | 3_1:-73407807 | Msa0374150:CDS |
GTCGAGACATCTACATGTAT+AGG | 0.522956 | 3_1:-73407622 | Msa0374150:intron |
ATCAGGTGGTTGCATGTCCA+CGG | 0.524115 | 3_1:+73407994 | None:intergenic |
AAGAAAAGAAAAGTGGAAGA+TGG | 0.529987 | 3_1:-73407112 | Msa0374150:CDS |
CTTCTCATAATTGGTGGTCG+AGG | 0.540724 | 3_1:+73408043 | None:intergenic |
AGGTTGTTGGTTTGATCAGG+TGG | 0.542107 | 3_1:+73407980 | None:intergenic |
TGGCTGTGGCTGTGTGTGAA+GGG | 0.543537 | 3_1:+73407768 | None:intergenic |
TGCCATGTTCTTGATCATCA+TGG | 0.545211 | 3_1:+73407894 | None:intergenic |
AGCAGTAGAAGCTTTGGCAG+TGG | 0.548192 | 3_1:+73407044 | None:intergenic |
GCTTTGGCAGTGGCCGTGCA+CGG | 0.562038 | 3_1:+73407054 | None:intergenic |
TCATGTGCACTCACACTCAA+AGG | 0.576185 | 3_1:+73407710 | None:intergenic |
CCGTGTATCACCACCGTGCA+CGG | 0.577796 | 3_1:-73407067 | Msa0374150:CDS |
AATCCACATACGGTTGTGAT+GGG | 0.578470 | 3_1:-73407860 | Msa0374150:CDS |
CCTCACTTTCTCCAAACTTG+TGG | 0.579241 | 3_1:-73407671 | Msa0374150:CDS |
CCGTGCACGGTGGTGATACA+CGG | 0.602872 | 3_1:+73407067 | None:intergenic |
CACCATGATGATCAAGAACA+TGG | 0.605152 | 3_1:-73407896 | Msa0374150:CDS |
TGGTGTGGATGTGGCTGCAG+AGG | 0.618105 | 3_1:+73407914 | None:intergenic |
GTGGCTGATGAACGTTTAGT+GGG | 0.621978 | 3_1:-73407806 | Msa0374150:CDS |
CCACAAGTTTGGAGAAAGTG+AGG | 0.629285 | 3_1:+73407671 | None:intergenic |
TGTTCTTGATCATCATGGTG+TGG | 0.629577 | 3_1:+73407899 | None:intergenic |
CAACATCAAGAATCCACATA+CGG | 0.631823 | 3_1:-73407870 | Msa0374150:CDS |
CATGAGTGGTGGTTTGTCCG+TGG | 0.637137 | 3_1:-73408011 | Msa0374150:CDS |
AGAAGAACAAGAAGCATGAG+TGG | 0.643370 | 3_1:-73408025 | Msa0374150:CDS |
TACATGTAGATGTCTCGACC+AGG | 0.645212 | 3_1:+73407626 | None:intergenic |
CAACCTAGAATCCCATCATG+AGG | 0.662994 | 3_1:-73407963 | Msa0374150:CDS |
TTGGCAGTGGCCGTGCACGG+TGG | 0.682224 | 3_1:+73407057 | None:intergenic |
GAGCCAAACGACAGTTACAG+AGG | 0.685876 | 3_1:+73407648 | None:intergenic |
AGAACAAGAAGCATGAGTGG+TGG | 0.691730 | 3_1:-73408022 | Msa0374150:CDS |
CATTAAAAGTGAATTAACGG+TGG | 0.697236 | 3_1:-73407825 | Msa0374150:CDS |
TGCACGGTGGTGATACACGG+TGG | 0.754526 | 3_1:+73407070 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATGAATAATAGAAAAAAT+TGG | + | chr3_1:73407504-73407523 | None:intergenic | 10.0% |
!!! | TTAATTAATTTTTTGTTTAG+AGG | - | chr3_1:73407828-73407847 | Msa0374150:CDS | 10.0% |
!! | TAATGAATAATAGAAAAAAT+TGG | + | chr3_1:73407504-73407523 | None:intergenic | 10.0% |
!!! | TTAATTAATTTTTTGTTTAG+AGG | - | chr3_1:73407828-73407847 | Msa0374150:CDS | 10.0% |
!! | GTTAGTTAGTATAATTAATT+TGG | - | chr3_1:73407859-73407878 | Msa0374150:CDS | 15.0% |
!!! | AAAGAAAATTATTGATTTCA+GGG | - | chr3_1:73407903-73407922 | Msa0374150:CDS | 15.0% |
!! | GTTAGTTAGTATAATTAATT+TGG | - | chr3_1:73407859-73407878 | Msa0374150:CDS | 15.0% |
!!! | AAAGAAAATTATTGATTTCA+GGG | - | chr3_1:73407903-73407922 | Msa0374150:CDS | 15.0% |
!! | ACACATTAAAAGTGAATTAA+CGG | - | chr3_1:73407265-73407284 | Msa0374150:intron | 20.0% |
!! | AATAATATTGTTAGTGTTTG+TGG | + | chr3_1:73407348-73407367 | None:intergenic | 20.0% |
!! | AATAGTATTAATTCTTCCTT+TGG | + | chr3_1:73407730-73407749 | None:intergenic | 20.0% |
!!! | ATTTTTTGTTTAGAGGAAAT+TGG | - | chr3_1:73407835-73407854 | Msa0374150:CDS | 20.0% |
!!! | TTTTTTGTTTAGAGGAAATT+GGG | - | chr3_1:73407836-73407855 | Msa0374150:CDS | 20.0% |
!!! | GAAAGAAAATTATTGATTTC+AGG | - | chr3_1:73407902-73407921 | Msa0374150:CDS | 20.0% |
!!! | AAGAAAATTATTGATTTCAG+GGG | - | chr3_1:73407904-73407923 | Msa0374150:CDS | 20.0% |
!! | ACACATTAAAAGTGAATTAA+CGG | - | chr3_1:73407265-73407284 | Msa0374150:intron | 20.0% |
!! | AATAATATTGTTAGTGTTTG+TGG | + | chr3_1:73407348-73407367 | None:intergenic | 20.0% |
!! | AATAGTATTAATTCTTCCTT+TGG | + | chr3_1:73407730-73407749 | None:intergenic | 20.0% |
!!! | ATTTTTTGTTTAGAGGAAAT+TGG | - | chr3_1:73407835-73407854 | Msa0374150:CDS | 20.0% |
!!! | TTTTTTGTTTAGAGGAAATT+GGG | - | chr3_1:73407836-73407855 | Msa0374150:CDS | 20.0% |
!!! | GAAAGAAAATTATTGATTTC+AGG | - | chr3_1:73407902-73407921 | Msa0374150:CDS | 20.0% |
!!! | AAGAAAATTATTGATTTCAG+GGG | - | chr3_1:73407904-73407923 | Msa0374150:CDS | 20.0% |
!! | TGACTTTGATATTCTTGTTT+AGG | + | chr3_1:73407611-73407630 | None:intergenic | 25.0% |
! | TAAACAAGAATATCAAAGTC+AGG | - | chr3_1:73407610-73407629 | Msa0374150:intron | 25.0% |
!!! | ACTTGTTATAAGAGTTAGTT+AGG | - | chr3_1:73407637-73407656 | Msa0374150:CDS | 25.0% |
! | CTGAAAATAAAGAGACAATT+AGG | + | chr3_1:73407700-73407719 | None:intergenic | 25.0% |
!!! | TTTTTGTTTAGAGGAAATTG+GGG | - | chr3_1:73407837-73407856 | Msa0374150:CDS | 25.0% |
! | AAGACAAAAGAAAAGAAAAG+TGG | - | chr3_1:73407974-73407993 | Msa0374150:CDS | 25.0% |
!! | TGACTTTGATATTCTTGTTT+AGG | + | chr3_1:73407611-73407630 | None:intergenic | 25.0% |
! | TAAACAAGAATATCAAAGTC+AGG | - | chr3_1:73407610-73407629 | Msa0374150:intron | 25.0% |
!!! | ACTTGTTATAAGAGTTAGTT+AGG | - | chr3_1:73407637-73407656 | Msa0374150:CDS | 25.0% |
! | CTGAAAATAAAGAGACAATT+AGG | + | chr3_1:73407700-73407719 | None:intergenic | 25.0% |
!!! | TTTTTGTTTAGAGGAAATTG+GGG | - | chr3_1:73407837-73407856 | Msa0374150:CDS | 25.0% |
! | AAGACAAAAGAAAAGAAAAG+TGG | - | chr3_1:73407974-73407993 | Msa0374150:CDS | 25.0% |
CTTCTTGTTCTTCTCATAAT+TGG | + | chr3_1:73407062-73407081 | None:intergenic | 30.0% | |
CATTAAAAGTGAATTAACGG+TGG | - | chr3_1:73407268-73407287 | Msa0374150:intron | 30.0% | |
!! | TATTTTCAGTATCGAACCAA+AGG | - | chr3_1:73407711-73407730 | Msa0374150:CDS | 30.0% |
TTCATTCTAGTAGTTTGACT+AGG | - | chr3_1:73407751-73407770 | Msa0374150:CDS | 30.0% | |
AAGAAAAGAAAAGTGGAAGA+TGG | - | chr3_1:73407981-73408000 | Msa0374150:CDS | 30.0% | |
CTTCTTGTTCTTCTCATAAT+TGG | + | chr3_1:73407062-73407081 | None:intergenic | 30.0% | |
CATTAAAAGTGAATTAACGG+TGG | - | chr3_1:73407268-73407287 | Msa0374150:intron | 30.0% | |
!! | TATTTTCAGTATCGAACCAA+AGG | - | chr3_1:73407711-73407730 | Msa0374150:CDS | 30.0% |
TTCATTCTAGTAGTTTGACT+AGG | - | chr3_1:73407751-73407770 | Msa0374150:CDS | 30.0% | |
AAGAAAAGAAAAGTGGAAGA+TGG | - | chr3_1:73407981-73408000 | Msa0374150:CDS | 30.0% | |
CTTGTTCTTCTCATAATTGG+TGG | + | chr3_1:73407059-73407078 | None:intergenic | 35.0% | |
CAACATCAAGAATCCACATA+CGG | - | chr3_1:73407223-73407242 | Msa0374150:intron | 35.0% | |
AGACATCTACATGTATAGGT+AGG | - | chr3_1:73407475-73407494 | Msa0374150:intron | 35.0% | |
! | AGATACAGCATTTTGCAGTT+TGG | - | chr3_1:73407927-73407946 | Msa0374150:CDS | 35.0% |
CTTGTTCTTCTCATAATTGG+TGG | + | chr3_1:73407059-73407078 | None:intergenic | 35.0% | |
CAACATCAAGAATCCACATA+CGG | - | chr3_1:73407223-73407242 | Msa0374150:intron | 35.0% | |
AGACATCTACATGTATAGGT+AGG | - | chr3_1:73407475-73407494 | Msa0374150:intron | 35.0% | |
! | AGATACAGCATTTTGCAGTT+TGG | - | chr3_1:73407927-73407946 | Msa0374150:CDS | 35.0% |
! | AGAAGAACAAGAAGCATGAG+TGG | - | chr3_1:73407068-73407087 | Msa0374150:CDS | 40.0% |
!! | TCTAGGTTGTTGGTTTGATC+AGG | + | chr3_1:73407119-73407138 | None:intergenic | 40.0% |
! | ATGATGGGATTCTAGGTTGT+TGG | + | chr3_1:73407129-73407148 | None:intergenic | 40.0% |
!! | CACTGATTCTTCCTCATGAT+GGG | + | chr3_1:73407144-73407163 | None:intergenic | 40.0% |
!! | TCACTGATTCTTCCTCATGA+TGG | + | chr3_1:73407145-73407164 | None:intergenic | 40.0% |
TGTTCTTGATCATCATGGTG+TGG | + | chr3_1:73407197-73407216 | None:intergenic | 40.0% | |
CACCATGATGATCAAGAACA+TGG | - | chr3_1:73407197-73407216 | Msa0374150:intron | 40.0% | |
TGCCATGTTCTTGATCATCA+TGG | + | chr3_1:73407202-73407221 | None:intergenic | 40.0% | |
AATCCACATACGGTTGTGAT+GGG | - | chr3_1:73407233-73407252 | Msa0374150:intron | 40.0% | |
ATTGTTAGTGTTTGTGGCTG+TGG | + | chr3_1:73407342-73407361 | None:intergenic | 40.0% | |
GTCGAGACATCTACATGTAT+AGG | - | chr3_1:73407471-73407490 | Msa0374150:intron | 40.0% | |
TAATCCGGAGTTCAGTCAAA+GGG | - | chr3_1:73407577-73407596 | Msa0374150:intron | 40.0% | |
! | TTTTCCCTTTGACTGAACTC+CGG | + | chr3_1:73407584-73407603 | None:intergenic | 40.0% |
!! | ATTTTGCAGTTTGGAGTGCA+GGG | - | chr3_1:73407936-73407955 | Msa0374150:CDS | 40.0% |
! | AGAAGAACAAGAAGCATGAG+TGG | - | chr3_1:73407068-73407087 | Msa0374150:CDS | 40.0% |
!! | TCTAGGTTGTTGGTTTGATC+AGG | + | chr3_1:73407119-73407138 | None:intergenic | 40.0% |
! | ATGATGGGATTCTAGGTTGT+TGG | + | chr3_1:73407129-73407148 | None:intergenic | 40.0% |
!! | CACTGATTCTTCCTCATGAT+GGG | + | chr3_1:73407144-73407163 | None:intergenic | 40.0% |
!! | TCACTGATTCTTCCTCATGA+TGG | + | chr3_1:73407145-73407164 | None:intergenic | 40.0% |
TGTTCTTGATCATCATGGTG+TGG | + | chr3_1:73407197-73407216 | None:intergenic | 40.0% | |
CACCATGATGATCAAGAACA+TGG | - | chr3_1:73407197-73407216 | Msa0374150:intron | 40.0% | |
TGCCATGTTCTTGATCATCA+TGG | + | chr3_1:73407202-73407221 | None:intergenic | 40.0% | |
AATCCACATACGGTTGTGAT+GGG | - | chr3_1:73407233-73407252 | Msa0374150:intron | 40.0% | |
ATTGTTAGTGTTTGTGGCTG+TGG | + | chr3_1:73407342-73407361 | None:intergenic | 40.0% | |
GTCGAGACATCTACATGTAT+AGG | - | chr3_1:73407471-73407490 | Msa0374150:intron | 40.0% | |
TAATCCGGAGTTCAGTCAAA+GGG | - | chr3_1:73407577-73407596 | Msa0374150:intron | 40.0% | |
! | TTTTCCCTTTGACTGAACTC+CGG | + | chr3_1:73407584-73407603 | None:intergenic | 40.0% |
!! | ATTTTGCAGTTTGGAGTGCA+GGG | - | chr3_1:73407936-73407955 | Msa0374150:CDS | 40.0% |
! | CTTCTCATAATTGGTGGTCG+AGG | + | chr3_1:73407053-73407072 | None:intergenic | 45.0% |
! | AGAACAAGAAGCATGAGTGG+TGG | - | chr3_1:73407071-73407090 | Msa0374150:CDS | 45.0% |
!! | AGGTTGTTGGTTTGATCAGG+TGG | + | chr3_1:73407116-73407135 | None:intergenic | 45.0% |
CAACCTAGAATCCCATCATG+AGG | - | chr3_1:73407130-73407149 | Msa0374150:CDS | 45.0% | |
! | CTTCCTCATGATGGGATTCT+AGG | + | chr3_1:73407136-73407155 | None:intergenic | 45.0% |
TGATCATCATGGTGTGGATG+TGG | + | chr3_1:73407191-73407210 | None:intergenic | 45.0% | |
GAATCCACATACGGTTGTGA+TGG | - | chr3_1:73407232-73407251 | Msa0374150:intron | 45.0% | |
GTGGCTGATGAACGTTTAGT+GGG | - | chr3_1:73407287-73407306 | Msa0374150:intron | 45.0% | |
TCATGTGCACTCACACTCAA+AGG | + | chr3_1:73407386-73407405 | None:intergenic | 45.0% | |
CCACAAGTTTGGAGAAAGTG+AGG | + | chr3_1:73407425-73407444 | None:intergenic | 45.0% | |
CCTCACTTTCTCCAAACTTG+TGG | - | chr3_1:73407422-73407441 | Msa0374150:intron | 45.0% | |
AGTTACAGAGGCCACAAGTT+TGG | + | chr3_1:73407436-73407455 | None:intergenic | 45.0% | |
TACATGTAGATGTCTCGACC+AGG | + | chr3_1:73407470-73407489 | None:intergenic | 45.0% | |
TGTAAACCCTACTCTGCCTA+GGG | - | chr3_1:73407538-73407557 | Msa0374150:intron | 45.0% | |
GTAATCCGGAGTTCAGTCAA+AGG | - | chr3_1:73407576-73407595 | Msa0374150:intron | 45.0% | |
!! | CATTTTGCAGTTTGGAGTGC+AGG | - | chr3_1:73407935-73407954 | Msa0374150:CDS | 45.0% |
TACACGGTGGTCTTCTTTGT+TGG | + | chr3_1:73408013-73408032 | None:intergenic | 45.0% | |
ACAAGCAGCAGTAGAAGCTT+TGG | + | chr3_1:73408058-73408077 | None:intergenic | 45.0% | |
! | CTTCTCATAATTGGTGGTCG+AGG | + | chr3_1:73407053-73407072 | None:intergenic | 45.0% |
! | AGAACAAGAAGCATGAGTGG+TGG | - | chr3_1:73407071-73407090 | Msa0374150:CDS | 45.0% |
!! | AGGTTGTTGGTTTGATCAGG+TGG | + | chr3_1:73407116-73407135 | None:intergenic | 45.0% |
CAACCTAGAATCCCATCATG+AGG | - | chr3_1:73407130-73407149 | Msa0374150:CDS | 45.0% | |
! | CTTCCTCATGATGGGATTCT+AGG | + | chr3_1:73407136-73407155 | None:intergenic | 45.0% |
TGATCATCATGGTGTGGATG+TGG | + | chr3_1:73407191-73407210 | None:intergenic | 45.0% | |
GAATCCACATACGGTTGTGA+TGG | - | chr3_1:73407232-73407251 | Msa0374150:intron | 45.0% | |
GTGGCTGATGAACGTTTAGT+GGG | - | chr3_1:73407287-73407306 | Msa0374150:intron | 45.0% | |
TCATGTGCACTCACACTCAA+AGG | + | chr3_1:73407386-73407405 | None:intergenic | 45.0% | |
CCACAAGTTTGGAGAAAGTG+AGG | + | chr3_1:73407425-73407444 | None:intergenic | 45.0% | |
CCTCACTTTCTCCAAACTTG+TGG | - | chr3_1:73407422-73407441 | Msa0374150:intron | 45.0% | |
AGTTACAGAGGCCACAAGTT+TGG | + | chr3_1:73407436-73407455 | None:intergenic | 45.0% | |
TACATGTAGATGTCTCGACC+AGG | + | chr3_1:73407470-73407489 | None:intergenic | 45.0% | |
TGTAAACCCTACTCTGCCTA+GGG | - | chr3_1:73407538-73407557 | Msa0374150:intron | 45.0% | |
GTAATCCGGAGTTCAGTCAA+AGG | - | chr3_1:73407576-73407595 | Msa0374150:intron | 45.0% | |
!! | CATTTTGCAGTTTGGAGTGC+AGG | - | chr3_1:73407935-73407954 | Msa0374150:CDS | 45.0% |
TACACGGTGGTCTTCTTTGT+TGG | + | chr3_1:73408013-73408032 | None:intergenic | 45.0% | |
ACAAGCAGCAGTAGAAGCTT+TGG | + | chr3_1:73408058-73408077 | None:intergenic | 45.0% | |
ATCAGGTGGTTGCATGTCCA+CGG | + | chr3_1:73407102-73407121 | None:intergenic | 50.0% | |
GTTCCCATCACAACCGTATG+TGG | + | chr3_1:73407239-73407258 | None:intergenic | 50.0% | |
GGTGGCTGATGAACGTTTAG+TGG | - | chr3_1:73407286-73407305 | Msa0374150:intron | 50.0% | |
TGGCCTCTGTAACTGTCGTT+TGG | - | chr3_1:73407442-73407461 | Msa0374150:intron | 50.0% | |
GAGCCAAACGACAGTTACAG+AGG | + | chr3_1:73407448-73407467 | None:intergenic | 50.0% | |
! | TGTAACTGTCGTTTGGCTCC+TGG | - | chr3_1:73407449-73407468 | Msa0374150:intron | 50.0% |
GTGTAAACCCTACTCTGCCT+AGG | - | chr3_1:73407537-73407556 | Msa0374150:intron | 50.0% | |
AAGGCAGAGCCTTCGTAATC+CGG | - | chr3_1:73407562-73407581 | Msa0374150:intron | 50.0% | |
GACTGAACTCCGGATTACGA+AGG | + | chr3_1:73407574-73407593 | None:intergenic | 50.0% | |
! | AGCAGTAGAAGCTTTGGCAG+TGG | + | chr3_1:73408052-73408071 | None:intergenic | 50.0% |
ATCAGGTGGTTGCATGTCCA+CGG | + | chr3_1:73407102-73407121 | None:intergenic | 50.0% | |
GTTCCCATCACAACCGTATG+TGG | + | chr3_1:73407239-73407258 | None:intergenic | 50.0% | |
GGTGGCTGATGAACGTTTAG+TGG | - | chr3_1:73407286-73407305 | Msa0374150:intron | 50.0% | |
TGGCCTCTGTAACTGTCGTT+TGG | - | chr3_1:73407442-73407461 | Msa0374150:intron | 50.0% | |
GAGCCAAACGACAGTTACAG+AGG | + | chr3_1:73407448-73407467 | None:intergenic | 50.0% | |
! | TGTAACTGTCGTTTGGCTCC+TGG | - | chr3_1:73407449-73407468 | Msa0374150:intron | 50.0% |
GTGTAAACCCTACTCTGCCT+AGG | - | chr3_1:73407537-73407556 | Msa0374150:intron | 50.0% | |
AAGGCAGAGCCTTCGTAATC+CGG | - | chr3_1:73407562-73407581 | Msa0374150:intron | 50.0% | |
GACTGAACTCCGGATTACGA+AGG | + | chr3_1:73407574-73407593 | None:intergenic | 50.0% | |
! | AGCAGTAGAAGCTTTGGCAG+TGG | + | chr3_1:73408052-73408071 | None:intergenic | 50.0% |
! | CATGAGTGGTGGTTTGTCCG+TGG | - | chr3_1:73407082-73407101 | Msa0374150:CDS | 55.0% |
TGGCTGTGGCTGTGTGTGAA+GGG | + | chr3_1:73407328-73407347 | None:intergenic | 55.0% | |
! | CATGAGTGGTGGTTTGTCCG+TGG | - | chr3_1:73407082-73407101 | Msa0374150:CDS | 55.0% |
TGGCTGTGGCTGTGTGTGAA+GGG | + | chr3_1:73407328-73407347 | None:intergenic | 55.0% | |
TGGTGTGGATGTGGCTGCAG+AGG | + | chr3_1:73407182-73407201 | None:intergenic | 60.0% | |
GTGGCTGTGGCTGTGTGTGA+AGG | + | chr3_1:73407329-73407348 | None:intergenic | 60.0% | |
ACCCTACTCTGCCTAGGGCA+AGG | - | chr3_1:73407543-73407562 | Msa0374150:intron | 60.0% | |
GCCTTGCCCTAGGCAGAGTA+GGG | + | chr3_1:73407547-73407566 | None:intergenic | 60.0% | |
TGCCTTGCCCTAGGCAGAGT+AGG | + | chr3_1:73407548-73407567 | None:intergenic | 60.0% | |
TGCACGGTGGTGATACACGG+TGG | + | chr3_1:73408026-73408045 | None:intergenic | 60.0% | |
CCGTGCACGGTGGTGATACA+CGG | + | chr3_1:73408029-73408048 | None:intergenic | 60.0% | |
CCGTGTATCACCACCGTGCA+CGG | - | chr3_1:73408026-73408045 | Msa0374150:CDS | 60.0% | |
TGGTGTGGATGTGGCTGCAG+AGG | + | chr3_1:73407182-73407201 | None:intergenic | 60.0% | |
GTGGCTGTGGCTGTGTGTGA+AGG | + | chr3_1:73407329-73407348 | None:intergenic | 60.0% | |
ACCCTACTCTGCCTAGGGCA+AGG | - | chr3_1:73407543-73407562 | Msa0374150:intron | 60.0% | |
GCCTTGCCCTAGGCAGAGTA+GGG | + | chr3_1:73407547-73407566 | None:intergenic | 60.0% | |
TGCCTTGCCCTAGGCAGAGT+AGG | + | chr3_1:73407548-73407567 | None:intergenic | 60.0% | |
TGCACGGTGGTGATACACGG+TGG | + | chr3_1:73408026-73408045 | None:intergenic | 60.0% | |
CCGTGCACGGTGGTGATACA+CGG | + | chr3_1:73408029-73408048 | None:intergenic | 60.0% | |
CCGTGTATCACCACCGTGCA+CGG | - | chr3_1:73408026-73408045 | Msa0374150:CDS | 60.0% | |
CGAAGGCTCTGCCTTGCCCT+AGG | + | chr3_1:73407557-73407576 | None:intergenic | 65.0% | |
GCTTTGGCAGTGGCCGTGCA+CGG | + | chr3_1:73408042-73408061 | None:intergenic | 65.0% | |
CGAAGGCTCTGCCTTGCCCT+AGG | + | chr3_1:73407557-73407576 | None:intergenic | 65.0% | |
GCTTTGGCAGTGGCCGTGCA+CGG | + | chr3_1:73408042-73408061 | None:intergenic | 65.0% | |
TTGGCAGTGGCCGTGCACGG+TGG | + | chr3_1:73408039-73408058 | None:intergenic | 70.0% | |
TTGGCAGTGGCCGTGCACGG+TGG | + | chr3_1:73408039-73408058 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_1 | gene | 73407032 | 73408083 | 73407032 | ID=Msa0374150;Name=Msa0374150 |
chr3_1 | mRNA | 73407032 | 73408083 | 73407032 | ID=Msa0374150-mRNA-1;Parent=Msa0374150;Name=Msa0374150-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|206 |
chr3_1 | exon | 73407623 | 73408083 | 73407623 | ID=Msa0374150-mRNA-1:exon:16717;Parent=Msa0374150-mRNA-1 |
chr3_1 | exon | 73407032 | 73407191 | 73407032 | ID=Msa0374150-mRNA-1:exon:16716;Parent=Msa0374150-mRNA-1 |
chr3_1 | CDS | 73407623 | 73408083 | 73407623 | ID=Msa0374150-mRNA-1:cds;Parent=Msa0374150-mRNA-1 |
chr3_1 | CDS | 73407032 | 73407191 | 73407032 | ID=Msa0374150-mRNA-1:cds;Parent=Msa0374150-mRNA-1 |
Gene Sequence |
Protein sequence |