AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0374260

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374260 MtrunA17_Chr3g0124761 97.222 288 6 1 1 286 1 288 0.0 587
Msa0374260 MtrunA17_Chr8g0384721 62.000 300 83 6 1 284 1 285 2.99e-119 343
Msa0374260 MtrunA17_Chr3g0130731 59.283 307 89 6 1 286 1 292 3.78e-113 328
Msa0374260 MtrunA17_Chr2g0318101 62.189 201 52 5 6 195 14 201 7.11e-81 248
Msa0374260 MtrunA17_Chr8g0359921 70.552 163 46 2 3 164 10 171 2.94e-78 240
Msa0374260 MtrunA17_Chr7g0252971 62.032 187 59 3 4 178 5 191 3.75e-78 240
Msa0374260 MtrunA17_Chr2g0318081 65.698 172 55 2 3 173 12 180 6.07e-78 240
Msa0374260 MtrunA17_Chr4g0047841 66.480 179 35 3 6 160 14 191 7.90e-76 234
Msa0374260 MtrunA17_Chr5g0417791 57.592 191 69 4 5 187 1 187 1.23e-72 224
Msa0374260 MtrunA17_Chr2g0326361 61.538 169 61 2 3 167 10 178 3.22e-72 224
Msa0374260 MtrunA17_Chr7g0263931 64.198 162 54 2 3 160 7 168 8.12e-72 224
Msa0374260 MtrunA17_Chr4g0042561 62.893 159 57 2 2 158 4 162 2.04e-70 218
Msa0374260 MtrunA17_Chr5g0417001 39.841 251 126 6 7 241 14 255 1.53e-58 191
Msa0374260 MtrunA17_Chr6g0453451 52.071 169 79 2 4 171 17 184 4.60e-58 188
Msa0374260 MtrunA17_Chr6g0484441 55.901 161 65 2 4 163 2 157 7.89e-58 188
Msa0374260 MtrunA17_Chr3g0139331 48.756 201 91 3 4 199 8 201 2.63e-57 187
Msa0374260 MtrunA17_Chr4g0060931 51.786 168 79 2 4 170 14 180 2.41e-56 185
Msa0374260 MtrunA17_Chr2g0309891 51.872 187 77 6 5 188 4 180 3.89e-56 184
Msa0374260 MtrunA17_Chr8g0361731 46.040 202 78 5 9 192 16 204 5.46e-56 185
Msa0374260 MtrunA17_Chr6g0453131 52.147 163 70 2 7 161 15 177 8.81e-56 184
Msa0374260 MtrunA17_Chr5g0433781 57.500 160 62 4 5 161 4 160 1.29e-55 189
Msa0374260 MtrunA17_Chr3g0091921 49.718 177 87 2 4 179 13 188 2.18e-55 181
Msa0374260 MtrunA17_Chr3g0109821 53.409 176 77 3 5 177 4 177 5.47e-55 188
Msa0374260 MtrunA17_Chr1g0147421 53.254 169 66 4 4 166 24 185 1.83e-54 180
Msa0374260 MtrunA17_Chr7g0214071 55.294 170 65 3 4 170 12 173 2.04e-54 177
Msa0374260 MtrunA17_Chr2g0309331 51.220 164 70 3 2 160 5 163 3.47e-54 179
Msa0374260 MtrunA17_Chr7g0253011 52.326 172 75 3 5 170 15 185 4.01e-54 180
Msa0374260 MtrunA17_Chr4g0076731 55.000 160 64 3 9 166 56 209 7.45e-54 181
Msa0374260 MtrunA17_Chr2g0316971 54.658 161 67 3 4 160 20 178 1.33e-53 178
Msa0374260 MtrunA17_Chr6g0481091 46.429 196 91 5 3 187 2 194 2.31e-53 174
Msa0374260 MtrunA17_Chr5g0442771 52.201 159 66 3 9 157 20 178 1.78e-51 171
Msa0374260 MtrunA17_Chr5g0398971 50.955 157 68 3 7 158 7 159 2.91e-51 171
Msa0374260 MtrunA17_Chr4g0017921 47.701 174 81 3 7 176 8 175 4.03e-51 171
Msa0374260 MtrunA17_Chr4g0056541 49.390 164 74 3 1 160 1 159 5.65e-51 171
Msa0374260 MtrunA17_Chr4g0018391 48.171 164 76 3 1 160 1 159 1.88e-50 169
Msa0374260 MtrunA17_Chr6g0461661 44.762 210 105 5 5 210 16 218 2.31e-50 170
Msa0374260 MtrunA17_Chr8g0372121 49.375 160 72 3 7 162 6 160 3.77e-50 167
Msa0374260 MtrunA17_Chr1g0183741 50.955 157 67 2 7 160 10 159 1.58e-49 165
Msa0374260 MtrunA17_Chr5g0405211 50.633 158 69 3 7 160 8 160 1.78e-49 167
Msa0374260 MtrunA17_Chr2g0311651 39.544 263 129 8 9 245 24 282 6.05e-49 164
Msa0374260 MtrunA17_Chr2g0312321 40.476 252 116 7 4 253 8 227 8.85e-49 164
Msa0374260 MtrunA17_Chr5g0400461 52.174 161 61 5 7 157 6 160 4.23e-48 163
Msa0374260 MtrunA17_Chr8g0346001 44.751 181 90 3 6 176 14 194 4.23e-48 166
Msa0374260 MtrunA17_Chr1g0200561 48.447 161 74 3 1 157 13 168 9.31e-48 162
Msa0374260 MtrunA17_Chr7g0217721 44.571 175 80 3 4 163 16 188 9.64e-48 162
Msa0374260 MtrunA17_Chr2g0311661 50.588 170 70 4 9 164 23 192 1.09e-47 160
Msa0374260 MtrunA17_Chr3g0130101 48.148 162 78 3 1 159 1 159 1.38e-47 162
Msa0374260 MtrunA17_Chr7g0261411 50.980 153 65 2 7 156 10 155 1.86e-47 160
Msa0374260 MtrunA17_Chr7g0217711 53.030 132 61 1 4 134 16 147 3.21e-47 156
Msa0374260 MtrunA17_Chr4g0038751 46.386 166 77 3 1 162 9 166 2.94e-46 157
Msa0374260 MtrunA17_Chr8g0385991 48.734 158 74 3 6 158 13 168 3.67e-46 155
Msa0374260 MtrunA17_Chr5g0428991 38.346 266 141 7 6 264 24 273 3.68e-46 164
Msa0374260 MtrunA17_Chr3g0131911 48.128 187 79 6 6 178 13 195 4.60e-46 155
Msa0374260 MtrunA17_Chr1g0197351 50.955 157 71 3 7 157 42 198 2.01e-45 159
Msa0374260 MtrunA17_Chr3g0144271 50.318 157 72 3 3 155 19 173 2.61e-45 158
Msa0374260 MtrunA17_Chr4g0054791 45.714 175 86 3 6 174 5 176 2.99e-45 155
Msa0374260 MtrunA17_Chr1g0197361 48.780 164 73 6 9 168 10 166 1.15e-44 159
Msa0374260 MtrunA17_Chr8g0364791 47.134 157 77 3 6 159 5 158 1.29e-44 156
Msa0374260 MtrunA17_Chr1g0201021 50.323 155 69 4 9 159 21 171 1.84e-44 158
Msa0374260 MtrunA17_Chr3g0092671 49.405 168 74 6 5 168 3 163 2.09e-44 157
Msa0374260 MtrunA17_Chr3g0128151 45.699 186 91 4 7 187 22 202 5.01e-44 157
Msa0374260 MtrunA17_Chr8g0384201 36.929 241 140 8 6 241 5 238 2.20e-41 149
Msa0374260 MtrunA17_Chr3g0128111 46.405 153 72 4 10 157 45 192 2.74e-41 142
Msa0374260 MtrunA17_Chr8g0345671 47.403 154 66 5 7 154 11 155 1.45e-37 137
Msa0374260 MtrunA17_Chr4g0026141 35.294 221 120 5 7 204 5 225 6.43e-35 126
Msa0374260 MtrunA17_Chr4g0050701 42.675 157 76 3 7 157 11 159 1.77e-34 123
Msa0374260 MtrunA17_Chr3g0113001 50.450 111 54 1 55 164 13 123 5.44e-33 122
Msa0374260 MtrunA17_Chr2g0321631 43.030 165 80 6 8 161 5 166 7.84e-33 120
Msa0374260 MtrunA17_Chr2g0321741 47.541 122 52 4 35 154 20 131 1.87e-32 122
Msa0374260 MtrunA17_Chr8g0345691 41.935 155 75 5 6 154 11 156 3.26e-32 123
Msa0374260 MtrunA17_Chr7g0266701 36.747 166 93 6 7 161 4 168 3.11e-30 114
Msa0374260 MtrunA17_Chr8g0345711 43.411 129 66 4 7 129 12 139 1.67e-29 110
Msa0374260 MtrunA17_Chr8g0384351 39.264 163 75 6 3 164 6 145 1.12e-27 105
Msa0374260 MtrunA17_Chr8g0345731 43.284 134 68 4 7 132 24 157 3.74e-27 103
Msa0374260 MtrunA17_Chr8g0345701 39.597 149 67 6 1 129 1 146 1.82e-26 102
Msa0374260 MtrunA17_Chr8g0345721 37.419 155 61 4 10 129 38 191 2.25e-25 100
Msa0374260 MtrunA17_Chr3g0113031 48.485 99 45 3 70 164 3 99 1.13e-23 97.1
Msa0374260 MtrunA17_Chr8g0345741 41.935 124 65 4 18 135 2 124 1.16e-23 94.4
Msa0374260 MtrunA17_Chr7g0243371 57.333 75 29 1 60 131 17 91 9.52e-23 90.5
Msa0374260 MtrunA17_Chr7g0251661 32.215 149 94 4 3 147 6 151 3.14e-22 90.5
Msa0374260 MtrunA17_Chr3g0130321 32.121 165 96 4 1 155 1 159 1.19e-20 87.8
Msa0374260 MtrunA17_Chr7g0251671 30.345 145 94 4 7 147 10 151 7.29e-19 81.6
Msa0374260 MtrunA17_Chr7g0251651 32.836 134 83 4 5 134 16 146 1.07e-18 82.0
Msa0374260 MtrunA17_Chr3g0113011 50.980 51 25 0 4 54 16 66 3.19e-13 63.9
Msa0374260 MtrunA17_Chr8g0389661 32.237 152 78 6 5 132 45 195 2.05e-12 67.0
Msa0374260 MtrunA17_Chr4g0040541 28.713 202 102 8 7 173 48 242 2.50e-12 65.9
Msa0374260 MtrunA17_Chr7g0274971 31.515 165 95 8 13 167 11 167 3.78e-12 64.3
Msa0374260 MtrunA17_Chr8g0367761 31.034 145 78 6 7 132 68 209 1.44e-11 63.5
Msa0374260 MtrunA17_Chr4g0046431 31.034 145 78 6 7 132 68 209 3.00e-11 63.2
Msa0374260 MtrunA17_Chr3g0113041 54.545 44 20 0 11 54 23 66 3.70e-11 58.2
Msa0374260 MtrunA17_Chr1g0198751 34.028 144 74 7 7 132 58 198 3.73e-11 63.2
Msa0374260 MtrunA17_Chr1g0194791 50.877 57 27 1 2 57 41 97 6.76e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0374260 AT1G01720.1 70.333 300 64 8 1 286 1 289 2.53e-145 409
Msa0374260 AT1G77450.1 62.030 266 53 5 2 264 5 225 3.31e-109 317
Msa0374260 AT5G08790.1 64.751 261 55 7 1 253 1 232 2.41e-107 313
Msa0374260 AT5G63790.1 55.290 293 78 6 1 286 44 290 1.95e-101 299
Msa0374260 AT5G63790.2 55.290 293 78 6 1 286 54 300 3.32e-101 299
Msa0374260 AT3G04070.2 61.307 199 63 5 7 194 10 205 1.42e-77 239
Msa0374260 AT3G15500.1 64.571 175 58 2 3 176 10 181 1.65e-77 238
Msa0374260 AT1G52890.1 50.575 261 94 7 3 231 10 267 2.03e-77 238
Msa0374260 AT4G27410.2 54.077 233 89 4 3 220 10 239 2.91e-77 237
Msa0374260 AT3G04070.1 57.477 214 63 5 7 194 10 221 3.71e-77 239
Msa0374260 AT1G61110.1 69.880 166 39 2 6 160 15 180 1.13e-76 236
Msa0374260 AT4G27410.3 50.800 250 88 5 3 220 10 256 5.65e-74 229
Msa0374260 AT3G15510.1 69.811 159 35 3 11 157 21 178 1.03e-71 225
Msa0374260 AT1G69490.1 63.580 162 57 2 1 160 3 164 8.20e-71 219
Msa0374260 AT1G52880.1 67.683 164 43 2 11 164 21 184 2.31e-67 213
Msa0374260 AT3G18400.1 55.280 161 67 2 4 163 2 158 1.82e-58 189
Msa0374260 AT5G61430.1 52.976 168 77 2 4 170 13 179 2.16e-57 187
Msa0374260 AT2G33480.2 59.355 155 54 3 5 158 13 159 7.39e-57 184
Msa0374260 AT5G07680.1 52.976 168 77 2 4 170 14 180 4.43e-56 184
Msa0374260 AT1G26870.1 48.691 191 81 3 7 188 16 198 5.64e-56 186
Msa0374260 AT2G02450.1 55.625 160 63 3 9 166 53 206 5.80e-56 185
Msa0374260 AT2G02450.2 55.625 160 63 3 9 166 53 206 7.79e-56 186
Msa0374260 AT5G07680.2 53.293 167 76 2 5 170 1 166 7.83e-56 182
Msa0374260 AT2G33480.1 58.065 155 58 3 5 158 13 161 1.04e-55 181
Msa0374260 AT5G39610.1 55.556 162 70 2 5 165 18 178 3.06e-55 180
Msa0374260 AT5G39820.1 48.603 179 71 3 9 166 22 200 3.82e-55 182
Msa0374260 AT1G65910.1 52.222 180 77 5 5 178 4 180 5.03e-55 188
Msa0374260 AT2G43000.1 53.614 166 73 3 9 173 20 182 7.88e-55 179
Msa0374260 AT5G53950.1 55.625 160 55 3 7 157 17 169 1.31e-54 181
Msa0374260 AT3G15170.1 51.220 164 76 2 4 164 17 179 4.66e-54 178
Msa0374260 AT5G13180.1 53.143 175 72 3 5 176 12 179 6.92e-54 176
Msa0374260 AT3G04060.1 56.129 155 65 2 5 157 18 171 9.86e-54 178
Msa0374260 AT2G24430.2 53.012 166 65 3 4 163 13 171 1.28e-53 177
Msa0374260 AT2G24430.1 53.012 166 65 3 4 163 13 171 1.28e-53 177
Msa0374260 AT3G03200.1 53.939 165 68 5 5 165 4 164 1.31e-53 181
Msa0374260 AT1G76420.1 53.750 160 67 3 3 159 18 173 1.35e-53 177
Msa0374260 AT5G18270.2 56.129 155 65 2 5 157 19 172 4.31e-53 176
Msa0374260 AT5G17260.1 53.333 165 69 5 5 165 4 164 4.33e-53 180
Msa0374260 AT5G18270.1 56.129 155 65 2 5 157 19 172 7.61e-53 176
Msa0374260 AT3G17730.1 50.000 180 79 5 7 178 6 182 1.43e-52 172
Msa0374260 AT3G29035.1 62.595 131 48 1 2 131 19 149 4.49e-52 173
Msa0374260 AT1G79580.3 50.000 162 70 3 2 158 12 167 1.02e-51 174
Msa0374260 AT1G79580.5 50.000 162 70 3 2 158 12 167 1.02e-51 174
Msa0374260 AT1G79580.4 50.000 162 70 3 2 158 12 167 1.02e-51 174
Msa0374260 AT1G79580.2 50.000 162 70 3 2 158 12 167 1.02e-51 174
Msa0374260 AT1G79580.1 50.000 162 70 3 2 158 12 167 1.02e-51 174
Msa0374260 AT4G17980.1 53.205 156 67 3 7 157 6 160 1.91e-51 170
Msa0374260 AT4G17980.2 53.205 156 67 3 7 157 6 160 2.85e-51 170
Msa0374260 AT4G10350.1 53.205 156 66 3 7 158 9 161 6.11e-51 171
Msa0374260 AT1G56010.2 45.361 194 91 4 4 195 16 196 5.69e-50 168
Msa0374260 AT1G33280.1 51.923 156 65 3 7 158 8 157 6.01e-50 167
Msa0374260 AT1G62700.1 50.000 162 72 3 1 158 1 157 8.49e-50 169
Msa0374260 AT1G62700.2 50.000 162 72 3 1 158 1 157 8.49e-50 169
Msa0374260 AT5G62380.2 50.000 164 73 3 1 160 1 159 1.07e-49 168
Msa0374260 AT5G62380.1 50.000 164 73 3 1 160 1 159 1.07e-49 168
Msa0374260 AT2G18060.3 50.000 158 70 3 7 160 9 161 1.36e-49 168
Msa0374260 AT2G18060.1 50.000 158 70 3 7 160 9 161 1.36e-49 168
Msa0374260 AT1G12260.2 50.307 163 70 4 1 158 1 157 1.37e-49 167
Msa0374260 AT3G10490.1 51.948 154 69 3 7 157 27 178 1.50e-49 164
Msa0374260 AT1G71930.2 50.323 155 68 3 7 157 9 158 1.86e-49 166
Msa0374260 AT1G71930.1 50.323 155 68 3 7 157 9 158 1.86e-49 166
Msa0374260 AT1G12260.1 50.307 163 70 4 1 158 1 157 2.35e-49 168
Msa0374260 AT4G36160.1 51.282 156 67 3 7 158 10 160 2.66e-49 167
Msa0374260 AT4G36160.3 51.282 156 67 3 7 158 10 160 2.66e-49 167
Msa0374260 AT3G10480.1 50.943 159 73 3 2 157 22 178 2.75e-49 169
Msa0374260 AT4G36160.2 51.282 156 67 3 7 158 14 164 2.95e-49 167
Msa0374260 AT3G10480.2 50.314 159 73 3 2 157 22 177 2.96e-49 169
Msa0374260 AT3G10500.1 50.588 170 75 4 2 168 4 167 5.82e-49 171
Msa0374260 AT5G04410.1 50.588 170 75 4 2 168 4 167 1.08e-48 170
Msa0374260 AT5G66300.1 50.314 159 71 3 7 161 12 166 1.19e-48 163
Msa0374260 AT2G46770.1 47.904 167 73 4 6 158 15 181 1.31e-48 166
Msa0374260 AT3G12977.1 50.323 155 74 3 4 157 15 167 1.50e-48 163
Msa0374260 AT1G54330.1 51.534 163 70 3 5 164 4 160 1.54e-48 163
Msa0374260 AT5G46590.1 52.903 155 67 4 7 157 6 158 1.56e-48 163
Msa0374260 AT3G10490.2 51.948 154 69 3 7 157 27 178 3.17e-48 166
Msa0374260 AT1G33060.1 53.205 156 63 4 7 157 24 174 3.71e-48 170
Msa0374260 AT1G33060.2 53.205 156 63 4 7 157 24 174 3.84e-48 170
Msa0374260 AT4G35580.3 54.487 156 61 4 7 157 9 159 4.13e-48 168
Msa0374260 AT4G35580.2 54.487 156 61 4 7 157 9 159 4.20e-48 168
Msa0374260 AT4G35580.1 54.487 156 61 4 7 157 9 159 5.16e-48 167
Msa0374260 AT2G17040.1 47.590 166 74 4 1 162 1 157 7.06e-48 161
Msa0374260 AT1G32770.1 47.273 165 76 3 6 159 15 179 2.81e-47 162
Msa0374260 AT5G46590.2 54.286 140 60 2 7 142 6 145 2.83e-47 159
Msa0374260 AT4G28530.1 48.538 171 62 3 6 157 9 172 1.18e-46 160
Msa0374260 AT3G61910.1 43.956 182 84 5 6 169 10 191 3.29e-46 158
Msa0374260 AT1G34180.3 48.466 163 75 5 9 168 18 174 3.98e-46 161
Msa0374260 AT1G34190.1 49.080 163 74 5 9 168 18 174 9.56e-46 162
Msa0374260 AT1G34180.1 48.466 163 75 5 9 168 18 174 2.51e-45 161
Msa0374260 AT3G12910.1 50.000 164 66 5 9 157 23 185 2.67e-45 155
Msa0374260 AT5G24590.2 39.608 255 110 9 7 222 13 262 2.88e-45 159
Msa0374260 AT1G32510.1 50.000 162 67 4 7 157 6 164 7.52e-45 153
Msa0374260 AT1G34180.4 45.143 175 75 5 9 168 18 186 2.52e-44 156
Msa0374260 AT3G10480.3 43.229 192 71 4 2 157 22 211 3.01e-44 157
Msa0374260 AT1G34180.2 45.143 175 75 5 9 168 18 186 1.41e-43 156
Msa0374260 AT5G09330.5 46.497 157 78 3 6 159 5 158 7.36e-43 153
Msa0374260 AT5G09330.2 46.497 157 78 3 6 159 5 158 7.36e-43 153
Msa0374260 AT5G09330.4 46.497 157 78 3 6 159 5 158 7.36e-43 153
Msa0374260 AT5G09330.3 46.497 157 78 3 6 159 5 158 7.36e-43 153
Msa0374260 AT5G09330.1 46.497 157 78 3 6 159 5 158 7.36e-43 153
Msa0374260 AT3G49530.2 46.541 159 78 3 7 161 13 168 8.92e-43 151
Msa0374260 AT5G64060.1 46.154 156 78 4 7 159 6 158 1.25e-42 149
Msa0374260 AT3G49530.1 46.541 159 78 3 7 161 13 168 2.26e-42 151
Msa0374260 AT1G32870.2 50.303 165 73 5 7 168 10 168 5.42e-39 143
Msa0374260 AT1G32870.1 50.303 165 73 5 7 168 10 168 6.01e-39 143
Msa0374260 AT1G32870.3 50.303 165 73 5 7 168 46 204 7.10e-39 143
Msa0374260 AT2G27300.1 50.400 125 60 2 7 129 14 138 8.10e-39 139
Msa0374260 AT3G44290.2 41.718 163 79 4 9 165 16 168 1.70e-37 132
Msa0374260 AT5G22290.1 42.073 164 78 5 9 165 23 176 2.74e-37 135
Msa0374260 AT3G44290.1 41.718 163 79 4 9 165 16 168 1.12e-36 133
Msa0374260 AT5G61430.2 51.220 123 46 3 55 170 1 116 1.82e-34 126
Msa0374260 AT5G64530.1 39.884 173 78 4 5 163 1 161 2.62e-34 123
Msa0374260 AT5G04395.1 41.558 154 73 3 2 138 23 176 1.17e-33 121
Msa0374260 AT5G64530.2 47.727 132 54 3 5 133 1 120 4.74e-33 119
Msa0374260 AT2G33480.3 57.000 100 39 2 60 158 8 104 1.59e-32 119
Msa0374260 AT3G44350.2 36.000 225 112 10 1 202 1 216 6.63e-32 118
Msa0374260 AT5G22380.1 34.962 266 122 14 1 250 1 231 8.38e-32 118
Msa0374260 AT1G56010.1 43.836 146 68 3 55 199 1 133 1.19e-31 118
Msa0374260 AT4G10350.2 54.286 105 44 2 55 158 13 114 3.49e-31 118
Msa0374260 AT4G28530.2 38.095 168 47 2 6 157 9 135 1.31e-30 117
Msa0374260 AT3G12977.2 52.427 103 46 3 56 157 14 114 2.85e-29 111
Msa0374260 AT3G44350.1 40.845 142 71 5 1 133 1 138 4.35e-29 108
Msa0374260 AT4G01520.1 37.356 174 91 6 8 171 5 170 9.00e-27 106
Msa0374260 AT4G01550.1 34.848 198 113 5 10 200 7 195 1.09e-26 108
Msa0374260 AT4G01540.4 37.791 172 89 6 10 171 7 170 1.09e-25 105
Msa0374260 AT4G01540.3 37.791 172 89 6 10 171 7 170 1.53e-25 105
Msa0374260 AT4G01540.2 37.791 172 89 6 10 171 7 170 1.74e-25 105
Msa0374260 AT4G01540.1 37.791 172 89 6 10 171 7 170 2.43e-25 105
Msa0374260 AT3G04420.2 40.000 130 73 3 5 129 1 130 2.99e-25 102
Msa0374260 AT3G04420.1 40.000 130 73 3 5 129 1 130 7.58e-25 102
Msa0374260 AT1G02230.1 40.000 130 67 5 8 129 4 130 8.47e-24 99.8
Msa0374260 AT2G43000.2 48.113 106 51 3 69 173 2 104 1.75e-23 95.5
Msa0374260 AT5G14000.1 33.333 180 103 5 5 181 13 178 3.74e-23 94.7
Msa0374260 AT5G14000.2 37.241 145 86 3 5 146 13 155 1.18e-22 92.0
Msa0374260 AT1G02220.1 38.462 130 72 4 5 129 1 127 1.09e-20 91.3
Msa0374260 AT1G02250.1 40.000 130 67 5 8 129 4 130 1.56e-20 90.5
Msa0374260 AT1G01010.1 35.185 162 74 7 10 154 6 153 5.46e-20 89.7
Msa0374260 AT3G10490.4 50.633 79 36 2 80 157 2 78 5.18e-18 83.2
Msa0374260 AT3G10490.3 50.633 79 36 2 80 157 2 78 5.18e-18 83.2
Msa0374260 AT3G56530.1 33.333 159 91 6 4 155 49 199 1.83e-17 81.3
Msa0374260 AT5G50820.1 35.821 134 69 5 5 131 15 138 2.36e-17 78.6
Msa0374260 AT3G04430.1 37.121 132 68 5 13 130 6 136 1.11e-15 74.3
Msa0374260 AT2G18060.2 44.156 77 37 2 85 160 2 73 4.53e-15 73.9
Msa0374260 AT4G29230.1 33.775 151 74 7 7 132 48 197 4.62e-13 69.3
Msa0374260 AT4G29230.2 33.775 151 74 7 7 132 47 196 4.65e-13 69.3
Msa0374260 AT4G29230.3 33.775 151 74 7 7 132 48 197 4.69e-13 69.3
Msa0374260 AT5G22290.2 41.860 86 34 4 86 165 2 77 2.31e-12 65.9
Msa0374260 AT5G56620.3 30.519 154 78 6 7 132 43 195 1.16e-11 65.1
Msa0374260 AT5G56620.2 30.519 154 78 6 7 132 43 195 1.29e-11 65.1
Msa0374260 AT5G56620.1 30.519 154 78 6 7 132 43 195 1.53e-11 64.7
Msa0374260 AT5G14490.4 29.101 189 96 9 7 169 55 231 2.27e-11 63.9
Msa0374260 AT5G14490.1 29.101 189 96 9 7 169 58 234 2.47e-11 63.9
Msa0374260 AT5G14490.2 29.101 189 96 9 7 169 55 231 2.90e-11 63.2
Msa0374260 AT5G14490.3 29.101 189 96 9 7 169 58 234 3.50e-11 63.5

Find 141 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCAATGGATTAGTATTT+TGG 0.127740 3_1:-73672466 None:intergenic
CGCAAACTACGGCTGGAATT+AGG 0.167335 3_1:+73672255 Msa0374260:CDS
TTTCAATGCTCAAAAGGTTT+TGG 0.220852 3_1:-73672507 None:intergenic
GCCACCCTGAACACTGGTTT+TGG 0.242265 3_1:+73672440 Msa0374260:CDS
TTGCTAGTAAGATTTGATTT+TGG 0.249324 3_1:-73670934 None:intergenic
GATAGTTTAAAACGGTTATA+TGG 0.260762 3_1:+73673264 Msa0374260:three_prime_UTR
TTCTTGATTCCAACCGGTTT+AGG 0.266059 3_1:-73671449 None:intergenic
GGGCGGCTGGGTCTGGATAT+TGG 0.274315 3_1:+73671393 Msa0374260:CDS
TTTATAGGTATGGCTTCTTA+TGG 0.275721 3_1:+73671305 Msa0374260:intron
TCAAGGCCGAACCGGGCGGC+TGG 0.280890 3_1:+73671380 Msa0374260:CDS
ACATAAAATTGGTACTAAAA+AGG 0.281199 3_1:-73673185 None:intergenic
CCGAACCGGGCGGCTGGGTC+TGG 0.306529 3_1:+73671386 Msa0374260:CDS
TCTTGATTCCAACCGGTTTA+GGG 0.332888 3_1:-73671448 None:intergenic
GCAAACTACGGCTGGAATTA+GGG 0.333355 3_1:+73672256 Msa0374260:CDS
CGGTTCGGCCTTGAACCGTT+TGG 0.337242 3_1:-73671371 None:intergenic
CCATGATTCTGTCAATCTTA+TGG 0.347093 3_1:+73672619 Msa0374260:three_prime_UTR
TGCCCTTCTTGTTGTAAATA+CGG 0.356578 3_1:-73672115 None:intergenic
GGAAGCCAAAACCAGTGTTC+AGG 0.356962 3_1:-73672445 None:intergenic
TTAAAACGGTTATATGGAAA+TGG 0.361510 3_1:+73673270 Msa0374260:three_prime_UTR
GTCCAAGCCAGAGAAAATTA+TGG 0.366814 3_1:+73672765 Msa0374260:three_prime_UTR
GGTTCGGCCTTGAACCGTTT+GGG 0.375212 3_1:-73671370 None:intergenic
CATGTGCATATAGTTATTGT+AGG 0.381321 3_1:+73672951 Msa0374260:three_prime_UTR
ATCTATATAAATATGATCCT+TGG 0.383433 3_1:+73671118 Msa0374260:CDS
AGAGATATTGTGCACTGTTT+TGG 0.385960 3_1:+73672871 Msa0374260:three_prime_UTR
GTGTCCATACAATATTGTTA+TGG 0.389687 3_1:+73672727 Msa0374260:three_prime_UTR
GCCAGAGAAAATTATGGAAA+AGG 0.391154 3_1:+73672771 Msa0374260:three_prime_UTR
GTGGCATCCACGTAATTATA+AGG 0.393502 3_1:-73672422 None:intergenic
TCTGGATATTGGAAGGCAAC+CGG 0.400133 3_1:+73671404 Msa0374260:CDS
CGGTTCATCCACATTATATA+GGG 0.403403 3_1:-73672899 None:intergenic
CCGGTTCATCCACATTATAT+AGG 0.405782 3_1:-73672900 None:intergenic
CTCGAATCGGTGTGCAGCTT+AGG 0.410548 3_1:-73672311 None:intergenic
TGAAAGAAAATAGTATCAAT+AGG 0.413399 3_1:+73673084 Msa0374260:three_prime_UTR
TGATACCGTGTATGTATGTT+TGG 0.417203 3_1:-73672647 None:intergenic
CGGTTAACAACACCGTTGCT+TGG 0.420254 3_1:-73672152 None:intergenic
ACCGGTTTAGGGTGACCTAT+TGG 0.422320 3_1:-73671437 None:intergenic
CCAGACCCAGCCGCCCGGTT+CGG 0.426418 3_1:-73671386 None:intergenic
CGTAATTATAAGGAAATTCA+AGG 0.432406 3_1:-73672412 None:intergenic
CCAGCCGTAGTTTGCGGCGG+AGG 0.437220 3_1:-73672248 None:intergenic
TAATCCATAACAATATTGTA+TGG 0.439956 3_1:-73672731 None:intergenic
ACAAAATCATGATATCATCT+TGG 0.440420 3_1:+73672556 Msa0374260:three_prime_UTR
CAAACGGTTCAAGGCCGAAC+CGG 0.447727 3_1:+73671372 Msa0374260:CDS
CTGGATATTGGAAGGCAACC+GGG 0.449962 3_1:+73671405 Msa0374260:CDS
TTTGTCTTTCAATGCTCAAA+AGG 0.450438 3_1:-73672513 None:intergenic
CAAGGCCGAACCGGGCGGCT+GGG 0.451424 3_1:+73671381 Msa0374260:CDS
TATTCTTCATTTCATAAACT+AGG 0.456062 3_1:+73670876 Msa0374260:five_prime_UTR
CAAAATCAAAATATATTGTA+TGG 0.458032 3_1:-73670904 None:intergenic
TAGGCTGCGACGTGCATTTG+CGG 0.459621 3_1:-73671068 None:intergenic
ATTCTTCATTTCATAAACTA+GGG 0.460543 3_1:+73670877 Msa0374260:five_prime_UTR
AAAGCTTTCTTGATTCCAAC+CGG 0.462419 3_1:-73671455 None:intergenic
CCTATATAATGTGGATGAAC+CGG 0.462838 3_1:+73672900 Msa0374260:three_prime_UTR
GATCATGCACGAGTATCGTT+TGG 0.466085 3_1:+73671523 Msa0374260:CDS
CTAAAGGTGATAAAACCAAT+TGG 0.468401 3_1:+73671501 Msa0374260:CDS
ACCTATTGGTTTATCCGCCC+CGG 0.468728 3_1:-73671423 None:intergenic
GTAGTTTGCGGCGGAGGATG+TGG 0.472297 3_1:-73672242 None:intergenic
ACCAATAGGTCACCCTAAAC+CGG 0.472837 3_1:+73671436 Msa0374260:CDS
CTAATTCCAGCCGTAGTTTG+CGG 0.474275 3_1:-73672254 None:intergenic
TATGGCTTCTTATGGAGAAA+AGG 0.474341 3_1:+73671313 Msa0374260:CDS
CCAGAGAAAATTATGGAAAA+GGG 0.479936 3_1:+73672772 Msa0374260:three_prime_UTR
TCTATATAAATATGATCCTT+GGG 0.481892 3_1:+73671119 Msa0374260:CDS
GTGAGCCTAAGTGGAATGAA+TGG 0.482300 3_1:+73672381 Msa0374260:CDS
GAAGCCAAAACCAGTGTTCA+GGG 0.483454 3_1:-73672444 None:intergenic
GGTTGGAATCAAGAAAGCTT+TGG 0.483861 3_1:+73671457 Msa0374260:CDS
GAAAGTACCCAAACGGTTCA+AGG 0.487674 3_1:+73671363 Msa0374260:CDS
AAGCTGCAAATGCATGTGTC+GGG 0.491202 3_1:+73672813 Msa0374260:three_prime_UTR
AGGTGCAGAGTGAGCCTAAG+TGG 0.496331 3_1:+73672372 Msa0374260:CDS
CCTCCGCCGCAAACTACGGC+TGG 0.497456 3_1:+73672248 Msa0374260:CDS
ATACTCGTGCATGATCCAAT+TGG 0.497532 3_1:-73671516 None:intergenic
AAAGACAAAGTACATTGGTC+AGG 0.500105 3_1:+73672527 Msa0374260:three_prime_UTR
TTCTCCCATTCATTCCACTT+AGG 0.500482 3_1:-73672386 None:intergenic
TTGCCGTATTTACAACAAGA+AGG 0.503330 3_1:+73672112 Msa0374260:CDS
CGAGCTCCTCATCCGTTGGA+TGG 0.515341 3_1:-73671029 None:intergenic
ATGCAGTTGATAGTTTAAAA+CGG 0.516740 3_1:+73673256 Msa0374260:three_prime_UTR
GCACACCGATTCGAGCTGTT+CGG 0.523824 3_1:+73672319 Msa0374260:CDS
CCTCCACGTGTCACGATCTC+CGG 0.524239 3_1:-73672209 None:intergenic
TACTGTCAATCCAACATGCC+GGG 0.524253 3_1:+73672591 Msa0374260:three_prime_UTR
ATCCGAGCTTCAATTACCAC+CGG 0.527594 3_1:+73670996 Msa0374260:CDS
ACATCCTCCGCCGCAAACTA+CGG 0.532859 3_1:+73672244 Msa0374260:CDS
TTCGGAGCACGTGGTATCAC+CGG 0.534411 3_1:+73672337 Msa0374260:CDS
CATGGTGGCACCCGGCATGT+TGG 0.534813 3_1:-73672601 None:intergenic
GACAGAATCATGGTGGCACC+CGG 0.540425 3_1:-73672609 None:intergenic
CAGATTCCATCCAACGGATG+AGG 0.542143 3_1:+73671023 Msa0374260:CDS
AAACGGTTCAAGGCCGAACC+GGG 0.545704 3_1:+73671373 Msa0374260:CDS
TGAGCCTAAGTGGAATGAAT+GGG 0.547748 3_1:+73672382 Msa0374260:CDS
ACCGGGGCGGATAAACCAAT+AGG 0.550145 3_1:+73671422 Msa0374260:CDS
GCGATGATCGGAACGGCGAT+AGG 0.550339 3_1:-73671087 None:intergenic
ATACTGAGATATATTAATCA+AGG 0.552042 3_1:-73673026 None:intergenic
CACATGCTAATCCTAGAGAC+AGG 0.555709 3_1:-73672934 None:intergenic
TGCACCTCACTTGCAAACTC+CGG 0.557338 3_1:-73672356 None:intergenic
TACGCGGGTAAAGCACCTAA+AGG 0.558141 3_1:+73671485 Msa0374260:CDS
GAGATCGTGACACGTGGAGG+TGG 0.558979 3_1:+73672212 Msa0374260:CDS
CTTCTTATGGAGAAAAGGAA+TGG 0.562020 3_1:+73671318 Msa0374260:CDS
TTTGGGTACTTTCTGTCTCG+TGG 0.562928 3_1:-73671353 None:intergenic
GTGCTCCGAACAGCTCGAAT+CGG 0.563123 3_1:-73672324 None:intergenic
TGCCGTATTTACAACAAGAA+GGG 0.564535 3_1:+73672113 Msa0374260:CDS
ATCACCGGAGTTTGCAAGTG+AGG 0.564595 3_1:+73672352 Msa0374260:CDS
AACATTCTGAAATCGAAGAC+AGG 0.566257 3_1:+73672183 Msa0374260:CDS
GTGGATGCCACCCTGAACAC+TGG 0.570340 3_1:+73672434 Msa0374260:CDS
GATTTACCTGGGAGGTCCCA+AGG 0.574322 3_1:-73671135 None:intergenic
GCCCGGTGGTAATTGAAGCT+CGG 0.575509 3_1:-73670998 None:intergenic
TGAAATCGAAGACAGGAAGC+CGG 0.575677 3_1:+73672190 Msa0374260:CDS
ATCACGAGCTCCTCATCCGT+TGG 0.576098 3_1:-73671033 None:intergenic
AATATCCAGACCCAGCCGCC+CGG 0.582754 3_1:-73671391 None:intergenic
CCATAAGATTGACAGAATCA+TGG 0.582984 3_1:-73672619 None:intergenic
TGGTACGTCCCTATATAATG+TGG 0.583136 3_1:+73672891 Msa0374260:three_prime_UTR
GTTATTGTAGGAAGTAGATA+CGG 0.584364 3_1:+73672963 Msa0374260:three_prime_UTR
TATGATCCTTGGGACCTCCC+AGG 0.585959 3_1:+73671129 Msa0374260:CDS
TTACTGTCAATCCAACATGC+CGG 0.586835 3_1:+73672590 Msa0374260:three_prime_UTR
AGATCAATTTCAGCGATGAT+CGG 0.587191 3_1:-73671099 None:intergenic
TTGTATGGACACACTTGCAC+AGG 0.587245 3_1:-73672716 None:intergenic
AAGAATACTAAGAAGAACTA+CGG 0.587660 3_1:-73670860 None:intergenic
CGAGACAGAAAGTACCCAAA+CGG 0.588955 3_1:+73671356 Msa0374260:CDS
TACATGAACATATCTTGCAA+TGG 0.597049 3_1:-73672479 None:intergenic
GTTGGATGGAATCTGAAGCC+CGG 0.600613 3_1:-73671015 None:intergenic
TGGATATTGGAAGGCAACCG+GGG 0.604916 3_1:+73671406 Msa0374260:CDS
ATAGGTCACCCTAAACCGGT+TGG 0.608554 3_1:+73671440 Msa0374260:CDS
GAAGCTGCAAATGCATGTGT+CGG 0.610621 3_1:+73672812 Msa0374260:three_prime_UTR
GTTTGCGGCGGAGGATGTGG+CGG 0.614306 3_1:-73672239 None:intergenic
TCCGAGCTTCAATTACCACC+GGG 0.623307 3_1:+73670997 Msa0374260:CDS
GAGACAGGTAAAATATGCAC+CGG 0.628058 3_1:-73672919 None:intergenic
TGAATTTCCTTATAATTACG+TGG 0.635048 3_1:+73672415 Msa0374260:CDS
AAGCCGGAGATCGTGACACG+TGG 0.637296 3_1:+73672206 Msa0374260:CDS
CATTGAAAGACAAAGTACAT+TGG 0.641102 3_1:+73672522 Msa0374260:three_prime_UTR
TTCGAGCTGTTCGGAGCACG+TGG 0.644987 3_1:+73672328 Msa0374260:CDS
ATTCCAGCCGTAGTTTGCGG+CGG 0.647744 3_1:-73672251 None:intergenic
GGGCTTCAGATTCCATCCAA+CGG 0.653227 3_1:+73671017 Msa0374260:CDS
CCGGAGATCGTGACACGTGG+AGG 0.654065 3_1:+73672209 Msa0374260:CDS
ACTAAGAAGAACTACGGTGG+CGG 0.655257 3_1:-73670854 None:intergenic
GGCTGGGTCTGGATATTGGA+AGG 0.659634 3_1:+73671397 Msa0374260:CDS
TATCACACAGATGCATTGCA+CGG 0.670981 3_1:+73672665 Msa0374260:three_prime_UTR
ATTGAGAAACAACCAAGCAA+CGG 0.677131 3_1:+73672140 Msa0374260:CDS
AATTTCAGCGATGATCGGAA+CGG 0.679262 3_1:-73671094 None:intergenic
ATTAAGTTTAGCATTCATAG+CGG 0.688705 3_1:+73670960 Msa0374260:five_prime_UTR
CGGTTCAAGGCCGAACCGGG+CGG 0.700064 3_1:+73671376 Msa0374260:CDS
ATCCATGTGATTTACCTGGG+AGG 0.702963 3_1:-73671143 None:intergenic
ATATTGGAAGGCAACCGGGG+CGG 0.704098 3_1:+73671409 Msa0374260:CDS
TCAATCCAAACATACATACA+CGG 0.711146 3_1:+73672642 Msa0374260:three_prime_UTR
AGCTGCAAATGCATGTGTCG+GGG 0.713068 3_1:+73672814 Msa0374260:three_prime_UTR
GGATGGAATCTGAAGCCCGG+TGG 0.713450 3_1:-73671012 None:intergenic
GCCAAAACCAGTGTTCAGGG+TGG 0.722298 3_1:-73672441 None:intergenic
AATACTAAGAAGAACTACGG+TGG 0.747559 3_1:-73670857 None:intergenic
TAAGATTGACAGAATCATGG+TGG 0.749440 3_1:-73672616 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATATTATGTTATTTTAT+AGG + chr3_1:73671290-73671309 Msa0374260:intron 10.0%
!!! CTTTTATTATGTTAAATATT+TGG + chr3_1:73672019-73672038 Msa0374260:intron 10.0%
!! CAAAATCAAAATATATTGTA+TGG - chr3_1:73670907-73670926 None:intergenic 15.0%
!!! ATTATGTTATTTTATAGGTA+TGG + chr3_1:73671295-73671314 Msa0374260:intron 15.0%
!!! CTTAATTCTAAAAATTAGAA+GGG - chr3_1:73671613-73671632 None:intergenic 15.0%
!!! TCTTAATTCTAAAAATTAGA+AGG - chr3_1:73671614-73671633 None:intergenic 15.0%
!! AAATGGAAAATAATAATAAG+TGG - chr3_1:73671929-73671948 None:intergenic 15.0%
!! AAAACATGAAATTGATTAAA+TGG + chr3_1:73672058-73672077 Msa0374260:intron 15.0%
!! TATTCTTCATTTCATAAACT+AGG + chr3_1:73670876-73670895 Msa0374260:five_prime_UTR 20.0%
!! ATTCTTCATTTCATAAACTA+GGG + chr3_1:73670877-73670896 Msa0374260:five_prime_UTR 20.0%
!! ATCTATATAAATATGATCCT+TGG + chr3_1:73671118-73671137 Msa0374260:CDS 20.0%
!! TCTATATAAATATGATCCTT+GGG + chr3_1:73671119-73671138 Msa0374260:CDS 20.0%
!!! AGTTTGACTTGAATTTTATT+AGG + chr3_1:73671982-73672001 Msa0374260:intron 20.0%
!!! ATCAATTTCATGTTTTTCTA+AGG - chr3_1:73672054-73672073 None:intergenic 20.0%
!! TAATCCATAACAATATTGTA+TGG - chr3_1:73672734-73672753 None:intergenic 20.0%
!! ATACTGAGATATATTAATCA+AGG - chr3_1:73673029-73673048 None:intergenic 20.0%
!! TGAAAGAAAATAGTATCAAT+AGG + chr3_1:73673084-73673103 Msa0374260:three_prime_UTR 20.0%
!! ATAAAAAAAAGAGAGAAAAG+GGG - chr3_1:73673114-73673133 None:intergenic 20.0%
!! CATAAAAAAAAGAGAGAAAA+GGG - chr3_1:73673115-73673134 None:intergenic 20.0%
!! ACATAAAAAAAAGAGAGAAA+AGG - chr3_1:73673116-73673135 None:intergenic 20.0%
!! ACATAAAATTGGTACTAAAA+AGG - chr3_1:73673188-73673207 None:intergenic 20.0%
!!! TTTAGTACCAATTTTATGTT+TGG + chr3_1:73673189-73673208 Msa0374260:three_prime_UTR 20.0%
!! TAAAAAGCCAAACATAAAAT+TGG - chr3_1:73673199-73673218 None:intergenic 20.0%
! AAGAATACTAAGAAGAACTA+CGG - chr3_1:73670863-73670882 None:intergenic 25.0%
!!! TTGCTAGTAAGATTTGATTT+TGG - chr3_1:73670937-73670956 None:intergenic 25.0%
! ATTAAGTTTAGCATTCATAG+CGG + chr3_1:73670960-73670979 Msa0374260:five_prime_UTR 25.0%
!! TTTGTTGAAAACTACCATTT+TGG + chr3_1:73671650-73671669 Msa0374260:intron 25.0%
!! GATGTTACTATTCTTCATTT+TGG - chr3_1:73671858-73671877 None:intergenic 25.0%
! GGAAAATAATAATAAGTGGT+TGG - chr3_1:73671925-73671944 None:intergenic 25.0%
!!! TTTCAGAATGTTCTGTTTTT+CGG - chr3_1:73672175-73672194 None:intergenic 25.0%
! CGTAATTATAAGGAAATTCA+AGG - chr3_1:73672415-73672434 None:intergenic 25.0%
! TGAATTTCCTTATAATTACG+TGG + chr3_1:73672415-73672434 Msa0374260:CDS 25.0%
! ACAAAATCATGATATCATCT+TGG + chr3_1:73672556-73672575 Msa0374260:three_prime_UTR 25.0%
!!! ATGCAGTTGATAGTTTAAAA+CGG + chr3_1:73673256-73673275 Msa0374260:three_prime_UTR 25.0%
!! GATAGTTTAAAACGGTTATA+TGG + chr3_1:73673264-73673283 Msa0374260:three_prime_UTR 25.0%
! TTAAAACGGTTATATGGAAA+TGG + chr3_1:73673270-73673289 Msa0374260:three_prime_UTR 25.0%
! ATTCATAGCGGAAAAAACAA+TGG + chr3_1:73670972-73670991 Msa0374260:exon 30.0%
TTTATAGGTATGGCTTCTTA+TGG + chr3_1:73671305-73671324 Msa0374260:intron 30.0%
!!! CAATTGGTTTTATCACCTTT+AGG - chr3_1:73671503-73671522 None:intergenic 30.0%
CTAAAGGTGATAAAACCAAT+TGG + chr3_1:73671501-73671520 Msa0374260:CDS 30.0%
TTGGTCCAAATTAAAAGACA+GGG - chr3_1:73671686-73671705 None:intergenic 30.0%
ATTGGTCCAAATTAAAAGAC+AGG - chr3_1:73671687-73671706 None:intergenic 30.0%
ATTTGGACCAATCAATGATT+TGG + chr3_1:73671695-73671714 Msa0374260:intron 30.0%
CTCTTGATTGATATACTTTG+TGG + chr3_1:73671789-73671808 Msa0374260:intron 30.0%
!! TATACTTTGTGGCTGATTTT+CGG + chr3_1:73671800-73671819 Msa0374260:intron 30.0%
GTGATGTGATGTTAATACTT+AGG - chr3_1:73671828-73671847 None:intergenic 30.0%
!!! AATGGTTCTGATTTTACAGT+TGG + chr3_1:73672076-73672095 Msa0374260:intron 30.0%
! TGATTTTACAGTTGGATGAT+TGG + chr3_1:73672084-73672103 Msa0374260:intron 30.0%
! GATTTTACAGTTGGATGATT+GGG + chr3_1:73672085-73672104 Msa0374260:intron 30.0%
!!! CTTGCAATGGATTAGTATTT+TGG - chr3_1:73672469-73672488 None:intergenic 30.0%
TACATGAACATATCTTGCAA+TGG - chr3_1:73672482-73672501 None:intergenic 30.0%
! TTCAATGCTCAAAAGGTTTT+GGG - chr3_1:73672509-73672528 None:intergenic 30.0%
! TTTCAATGCTCAAAAGGTTT+TGG - chr3_1:73672510-73672529 None:intergenic 30.0%
TTTGTCTTTCAATGCTCAAA+AGG - chr3_1:73672516-73672535 None:intergenic 30.0%
CATTGAAAGACAAAGTACAT+TGG + chr3_1:73672522-73672541 Msa0374260:three_prime_UTR 30.0%
TCAATCCAAACATACATACA+CGG + chr3_1:73672642-73672661 Msa0374260:three_prime_UTR 30.0%
GTGTCCATACAATATTGTTA+TGG + chr3_1:73672727-73672746 Msa0374260:three_prime_UTR 30.0%
CCAGAGAAAATTATGGAAAA+GGG + chr3_1:73672772-73672791 Msa0374260:three_prime_UTR 30.0%
CATGTGCATATAGTTATTGT+AGG + chr3_1:73672951-73672970 Msa0374260:three_prime_UTR 30.0%
GTTATTGTAGGAAGTAGATA+CGG + chr3_1:73672963-73672982 Msa0374260:three_prime_UTR 30.0%
AATACTAAGAAGAACTACGG+TGG - chr3_1:73670860-73670879 None:intergenic 35.0%
AGATCAATTTCAGCGATGAT+CGG - chr3_1:73671102-73671121 None:intergenic 35.0%
ATGATCCATGTGATTTACCT+GGG - chr3_1:73671149-73671168 None:intergenic 35.0%
AATGATCCATGTGATTTACC+TGG - chr3_1:73671150-73671169 None:intergenic 35.0%
TATGGCTTCTTATGGAGAAA+AGG + chr3_1:73671313-73671332 Msa0374260:CDS 35.0%
CTTCTTATGGAGAAAAGGAA+TGG + chr3_1:73671318-73671337 Msa0374260:CDS 35.0%
AAAGCTTTCTTGATTCCAAC+CGG - chr3_1:73671458-73671477 None:intergenic 35.0%
! TAAGCTGTTCTTTTTGCGAA+TGG - chr3_1:73671564-73671583 None:intergenic 35.0%
TTCGCAAAAAGAACAGCTTA+AGG + chr3_1:73671564-73671583 Msa0374260:CDS 35.0%
TCGCAAAAAGAACAGCTTAA+GGG + chr3_1:73671565-73671584 Msa0374260:CDS 35.0%
TGGTCCAAATTAAAAGACAG+GGG - chr3_1:73671685-73671704 None:intergenic 35.0%
TATGTGTGATAACTACACCA+AGG + chr3_1:73671747-73671766 Msa0374260:intron 35.0%
CAAGAGTTATCAACTAGTGA+AGG - chr3_1:73671775-73671794 None:intergenic 35.0%
TTGCCGTATTTACAACAAGA+AGG + chr3_1:73672112-73672131 Msa0374260:CDS 35.0%
TGCCGTATTTACAACAAGAA+GGG + chr3_1:73672113-73672132 Msa0374260:CDS 35.0%
! TGCCCTTCTTGTTGTAAATA+CGG - chr3_1:73672118-73672137 None:intergenic 35.0%
ATTGAGAAACAACCAAGCAA+CGG + chr3_1:73672140-73672159 Msa0374260:CDS 35.0%
!! AACATTCTGAAATCGAAGAC+AGG + chr3_1:73672183-73672202 Msa0374260:CDS 35.0%
AAAGACAAAGTACATTGGTC+AGG + chr3_1:73672527-73672546 Msa0374260:three_prime_UTR 35.0%
TAAGATTGACAGAATCATGG+TGG - chr3_1:73672619-73672638 None:intergenic 35.0%
CCATAAGATTGACAGAATCA+TGG - chr3_1:73672622-73672641 None:intergenic 35.0%
CCATGATTCTGTCAATCTTA+TGG + chr3_1:73672619-73672638 Msa0374260:three_prime_UTR 35.0%
TGATACCGTGTATGTATGTT+TGG - chr3_1:73672650-73672669 None:intergenic 35.0%
! TTCCATAATTTTCTCTGGCT+TGG - chr3_1:73672770-73672789 None:intergenic 35.0%
GCCAGAGAAAATTATGGAAA+AGG + chr3_1:73672771-73672790 Msa0374260:three_prime_UTR 35.0%
! CCCTTTTCCATAATTTTCTC+TGG - chr3_1:73672775-73672794 None:intergenic 35.0%
! AGAGATATTGTGCACTGTTT+TGG + chr3_1:73672871-73672890 Msa0374260:three_prime_UTR 35.0%
CGGTTCATCCACATTATATA+GGG - chr3_1:73672902-73672921 None:intergenic 35.0%
CCTATATAATGTGGATGAAC+CGG + chr3_1:73672900-73672919 Msa0374260:three_prime_UTR 35.0%
! TGCATATTTTACCTGTCTCT+AGG + chr3_1:73672923-73672942 Msa0374260:three_prime_UTR 35.0%
AATTTCAGCGATGATCGGAA+CGG - chr3_1:73671097-73671116 None:intergenic 40.0%
! TCTTGATTCCAACCGGTTTA+GGG - chr3_1:73671451-73671470 None:intergenic 40.0%
! TTCTTGATTCCAACCGGTTT+AGG - chr3_1:73671452-73671471 None:intergenic 40.0%
GGTTGGAATCAAGAAAGCTT+TGG + chr3_1:73671457-73671476 Msa0374260:CDS 40.0%
!!! GAAAGCTTTGGTGTTTTACG+CGG + chr3_1:73671469-73671488 Msa0374260:CDS 40.0%
!!! AAAGCTTTGGTGTTTTACGC+GGG + chr3_1:73671470-73671489 Msa0374260:CDS 40.0%
ATACTCGTGCATGATCCAAT+TGG - chr3_1:73671519-73671538 None:intergenic 40.0%
!! AAAACTACCATTTTGGCCCT+TGG + chr3_1:73671657-73671676 Msa0374260:intron 40.0%
!! AAACTACCATTTTGGCCCTT+GGG + chr3_1:73671658-73671677 Msa0374260:intron 40.0%
GCGTCAACCAAATCATTGAT+TGG - chr3_1:73671705-73671724 None:intergenic 40.0%
!! TGATTTGGTTGACGCAAATG+TGG + chr3_1:73671710-73671729 Msa0374260:intron 40.0%
ATCAACTAGTGAAGGTTCCT+TGG - chr3_1:73671767-73671786 None:intergenic 40.0%
TGAGCCTAAGTGGAATGAAT+GGG + chr3_1:73672382-73672401 Msa0374260:CDS 40.0%
TTCTCCCATTCATTCCACTT+AGG - chr3_1:73672389-73672408 None:intergenic 40.0%
GTGGCATCCACGTAATTATA+AGG - chr3_1:73672425-73672444 None:intergenic 40.0%
TTACTGTCAATCCAACATGC+CGG + chr3_1:73672590-73672609 Msa0374260:three_prime_UTR 40.0%
TATCACACAGATGCATTGCA+CGG + chr3_1:73672665-73672684 Msa0374260:three_prime_UTR 40.0%
!!! ATTTTCTCTGGCTTGGACTT+GGG - chr3_1:73672763-73672782 None:intergenic 40.0%
!!! AATTTTCTCTGGCTTGGACT+TGG - chr3_1:73672764-73672783 None:intergenic 40.0%
GTCCAAGCCAGAGAAAATTA+TGG + chr3_1:73672765-73672784 Msa0374260:three_prime_UTR 40.0%
TGGTACGTCCCTATATAATG+TGG + chr3_1:73672891-73672910 Msa0374260:three_prime_UTR 40.0%
CCGGTTCATCCACATTATAT+AGG - chr3_1:73672903-73672922 None:intergenic 40.0%
GAGACAGGTAAAATATGCAC+CGG - chr3_1:73672922-73672941 None:intergenic 40.0%
ACTAAGAAGAACTACGGTGG+CGG - chr3_1:73670857-73670876 None:intergenic 45.0%
ATCCGAGCTTCAATTACCAC+CGG + chr3_1:73670996-73671015 Msa0374260:CDS 45.0%
ATCCATGTGATTTACCTGGG+AGG - chr3_1:73671146-73671165 None:intergenic 45.0%
TTTGGGTACTTTCTGTCTCG+TGG - chr3_1:73671356-73671375 None:intergenic 45.0%
!! CGAGACAGAAAGTACCCAAA+CGG + chr3_1:73671356-73671375 Msa0374260:CDS 45.0%
!! GAAAGTACCCAAACGGTTCA+AGG + chr3_1:73671363-73671382 Msa0374260:CDS 45.0%
TCTGGATATTGGAAGGCAAC+CGG + chr3_1:73671404-73671423 Msa0374260:CDS 45.0%
ACCAATAGGTCACCCTAAAC+CGG + chr3_1:73671436-73671455 Msa0374260:CDS 45.0%
! GATCATGCACGAGTATCGTT+TGG + chr3_1:73671523-73671542 Msa0374260:CDS 45.0%
TTAAAAGACAGGGGACCCAA+GGG - chr3_1:73671676-73671695 None:intergenic 45.0%
ATTAAAAGACAGGGGACCCA+AGG - chr3_1:73671677-73671696 None:intergenic 45.0%
!! GGGTCCCCTGTCTTTTAATT+TGG + chr3_1:73671678-73671697 Msa0374260:intron 45.0%
TGAAATCGAAGACAGGAAGC+CGG + chr3_1:73672190-73672209 Msa0374260:CDS 45.0%
CTAATTCCAGCCGTAGTTTG+CGG - chr3_1:73672257-73672276 None:intergenic 45.0%
GCAAACTACGGCTGGAATTA+GGG + chr3_1:73672256-73672275 Msa0374260:CDS 45.0%
GTGAGCCTAAGTGGAATGAA+TGG + chr3_1:73672381-73672400 Msa0374260:CDS 45.0%
GAAGCCAAAACCAGTGTTCA+GGG - chr3_1:73672447-73672466 None:intergenic 45.0%
TACTGTCAATCCAACATGCC+GGG + chr3_1:73672591-73672610 Msa0374260:three_prime_UTR 45.0%
TTGTATGGACACACTTGCAC+AGG - chr3_1:73672719-73672738 None:intergenic 45.0%
GAAGCTGCAAATGCATGTGT+CGG + chr3_1:73672812-73672831 Msa0374260:three_prime_UTR 45.0%
AAGCTGCAAATGCATGTGTC+GGG + chr3_1:73672813-73672832 Msa0374260:three_prime_UTR 45.0%
CACATGCTAATCCTAGAGAC+AGG - chr3_1:73672937-73672956 None:intergenic 45.0%
!! AAATAAATAAATTCTATAAA+TGG - chr3_1:73671946-73671965 None:intergenic 5.0%
TCCGAGCTTCAATTACCACC+GGG + chr3_1:73670997-73671016 Msa0374260:CDS 50.0%
! GTTGGATGGAATCTGAAGCC+CGG - chr3_1:73671018-73671037 None:intergenic 50.0%
GGGCTTCAGATTCCATCCAA+CGG + chr3_1:73671017-73671036 Msa0374260:CDS 50.0%
CAGATTCCATCCAACGGATG+AGG + chr3_1:73671023-73671042 Msa0374260:CDS 50.0%
GACCTCCCAGGTAAATCACA+TGG + chr3_1:73671141-73671160 Msa0374260:intron 50.0%
CTGGATATTGGAAGGCAACC+GGG + chr3_1:73671405-73671424 Msa0374260:CDS 50.0%
TGGATATTGGAAGGCAACCG+GGG + chr3_1:73671406-73671425 Msa0374260:CDS 50.0%
!! ACCTATTGGTTTATCCGCCC+CGG - chr3_1:73671426-73671445 None:intergenic 50.0%
! ACCGGTTTAGGGTGACCTAT+TGG - chr3_1:73671440-73671459 None:intergenic 50.0%
ATAGGTCACCCTAAACCGGT+TGG + chr3_1:73671440-73671459 Msa0374260:CDS 50.0%
! TACGCGGGTAAAGCACCTAA+AGG + chr3_1:73671485-73671504 Msa0374260:CDS 50.0%
CGGTTAACAACACCGTTGCT+TGG - chr3_1:73672155-73672174 None:intergenic 50.0%
CGCAAACTACGGCTGGAATT+AGG + chr3_1:73672255-73672274 Msa0374260:CDS 50.0%
ATCACCGGAGTTTGCAAGTG+AGG + chr3_1:73672352-73672371 Msa0374260:CDS 50.0%
TGCACCTCACTTGCAAACTC+CGG - chr3_1:73672359-73672378 None:intergenic 50.0%
GGAAGCCAAAACCAGTGTTC+AGG - chr3_1:73672448-73672467 None:intergenic 50.0%
AGCTGCAAATGCATGTGTCG+GGG + chr3_1:73672814-73672833 Msa0374260:three_prime_UTR 50.0%
GCCCGGTGGTAATTGAAGCT+CGG - chr3_1:73671001-73671020 None:intergenic 55.0%
ATCACGAGCTCCTCATCCGT+TGG - chr3_1:73671036-73671055 None:intergenic 55.0%
TAGGCTGCGACGTGCATTTG+CGG - chr3_1:73671071-73671090 None:intergenic 55.0%
TATGATCCTTGGGACCTCCC+AGG + chr3_1:73671129-73671148 Msa0374260:CDS 55.0%
GATTTACCTGGGAGGTCCCA+AGG - chr3_1:73671138-73671157 None:intergenic 55.0%
GGTTCGGCCTTGAACCGTTT+GGG - chr3_1:73671373-73671392 None:intergenic 55.0%
CAAACGGTTCAAGGCCGAAC+CGG + chr3_1:73671372-73671391 Msa0374260:CDS 55.0%
AAACGGTTCAAGGCCGAACC+GGG + chr3_1:73671373-73671392 Msa0374260:CDS 55.0%
GGCTGGGTCTGGATATTGGA+AGG + chr3_1:73671397-73671416 Msa0374260:CDS 55.0%
ATATTGGAAGGCAACCGGGG+CGG + chr3_1:73671409-73671428 Msa0374260:CDS 55.0%
ACCGGGGCGGATAAACCAAT+AGG + chr3_1:73671422-73671441 Msa0374260:CDS 55.0%
ACATCCTCCGCCGCAAACTA+CGG + chr3_1:73672244-73672263 Msa0374260:CDS 55.0%
! ATTCCAGCCGTAGTTTGCGG+CGG - chr3_1:73672254-73672273 None:intergenic 55.0%
CTCGAATCGGTGTGCAGCTT+AGG - chr3_1:73672314-73672333 None:intergenic 55.0%
!! GCACACCGATTCGAGCTGTT+CGG + chr3_1:73672319-73672338 Msa0374260:CDS 55.0%
GTGCTCCGAACAGCTCGAAT+CGG - chr3_1:73672327-73672346 None:intergenic 55.0%
TTCGGAGCACGTGGTATCAC+CGG + chr3_1:73672337-73672356 Msa0374260:CDS 55.0%
AGGTGCAGAGTGAGCCTAAG+TGG + chr3_1:73672372-73672391 Msa0374260:CDS 55.0%
!!! GCCACCCTGAACACTGGTTT+TGG + chr3_1:73672440-73672459 Msa0374260:CDS 55.0%
GCCAAAACCAGTGTTCAGGG+TGG - chr3_1:73672444-73672463 None:intergenic 55.0%
GACAGAATCATGGTGGCACC+CGG - chr3_1:73672612-73672631 None:intergenic 55.0%
! GGATGGAATCTGAAGCCCGG+TGG - chr3_1:73671015-73671034 None:intergenic 60.0%
CGAGCTCCTCATCCGTTGGA+TGG - chr3_1:73671032-73671051 None:intergenic 60.0%
GCGATGATCGGAACGGCGAT+AGG - chr3_1:73671090-73671109 None:intergenic 60.0%
! CGGTTCGGCCTTGAACCGTT+TGG - chr3_1:73671374-73671393 None:intergenic 60.0%
AATATCCAGACCCAGCCGCC+CGG - chr3_1:73671394-73671413 None:intergenic 60.0%
AGGGGACCCAAGGGCCAAAA+TGG - chr3_1:73671667-73671686 None:intergenic 60.0%
AAGCCGGAGATCGTGACACG+TGG + chr3_1:73672206-73672225 Msa0374260:CDS 60.0%
CCTCCACGTGTCACGATCTC+CGG - chr3_1:73672212-73672231 None:intergenic 60.0%
GAGATCGTGACACGTGGAGG+TGG + chr3_1:73672212-73672231 Msa0374260:CDS 60.0%
! GTAGTTTGCGGCGGAGGATG+TGG - chr3_1:73672245-73672264 None:intergenic 60.0%
TTCGAGCTGTTCGGAGCACG+TGG + chr3_1:73672328-73672347 Msa0374260:CDS 60.0%
GTGGATGCCACCCTGAACAC+TGG + chr3_1:73672434-73672453 Msa0374260:CDS 60.0%
GGGCGGCTGGGTCTGGATAT+TGG + chr3_1:73671393-73671412 Msa0374260:CDS 65.0%
CCGGAGATCGTGACACGTGG+AGG + chr3_1:73672209-73672228 Msa0374260:CDS 65.0%
GTTTGCGGCGGAGGATGTGG+CGG - chr3_1:73672242-73672261 None:intergenic 65.0%
CATGGTGGCACCCGGCATGT+TGG - chr3_1:73672604-73672623 None:intergenic 65.0%
CGGTTCAAGGCCGAACCGGG+CGG + chr3_1:73671376-73671395 Msa0374260:CDS 70.0%
! CCAGCCGTAGTTTGCGGCGG+AGG - chr3_1:73672251-73672270 None:intergenic 70.0%
CCTCCGCCGCAAACTACGGC+TGG + chr3_1:73672248-73672267 Msa0374260:CDS 70.0%
TCAAGGCCGAACCGGGCGGC+TGG + chr3_1:73671380-73671399 Msa0374260:CDS 75.0%
CAAGGCCGAACCGGGCGGCT+GGG + chr3_1:73671381-73671400 Msa0374260:CDS 75.0%
CCAGACCCAGCCGCCCGGTT+CGG - chr3_1:73671389-73671408 None:intergenic 75.0%
! CCGAACCGGGCGGCTGGGTC+TGG + chr3_1:73671386-73671405 Msa0374260:CDS 80.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 73670849 73673329 73670849 ID=Msa0374260;Name=Msa0374260
chr3_1 mRNA 73670849 73673329 73670849 ID=Msa0374260-mRNA-1;Parent=Msa0374260;Name=Msa0374260-mRNA-1;_AED=0.03;_eAED=0.03;_QI=142|1|1|1|1|1|3|809|286
chr3_1 exon 73670849 73671150 73670849 ID=Msa0374260-mRNA-1:exon:16755;Parent=Msa0374260-mRNA-1
chr3_1 exon 73671312 73671586 73671312 ID=Msa0374260-mRNA-1:exon:16756;Parent=Msa0374260-mRNA-1
chr3_1 exon 73672095 73673329 73672095 ID=Msa0374260-mRNA-1:exon:16757;Parent=Msa0374260-mRNA-1
chr3_1 five_prime_UTR 73670849 73670990 73670849 ID=Msa0374260-mRNA-1:five_prime_utr;Parent=Msa0374260-mRNA-1
chr3_1 CDS 73670991 73671150 73670991 ID=Msa0374260-mRNA-1:cds;Parent=Msa0374260-mRNA-1
chr3_1 CDS 73671312 73671586 73671312 ID=Msa0374260-mRNA-1:cds;Parent=Msa0374260-mRNA-1
chr3_1 CDS 73672095 73672520 73672095 ID=Msa0374260-mRNA-1:cds;Parent=Msa0374260-mRNA-1
chr3_1 three_prime_UTR 73672521 73673329 73672521 ID=Msa0374260-mRNA-1:three_prime_utr;Parent=Msa0374260-mRNA-1
Gene Sequence

>Msa0374260

ATGGCATCCGAGCTTCAATTACCACCGGGCTTCAGATTCCATCCAACGGATGAGGAGCTCGTGATGCACTATCTCTGCCGCAAATGCACGTCGCAGCCTATCGCCGTTCCGATCATCGCTGAAATTGATCTATATAAATATGATCCTTGGGACCTCCCAGGTATGGCTTCTTATGGAGAAAAGGAATGGTACTTTTTCTCGCCACGAGACAGAAAGTACCCAAACGGTTCAAGGCCGAACCGGGCGGCTGGGTCTGGATATTGGAAGGCAACCGGGGCGGATAAACCAATAGGTCACCCTAAACCGGTTGGAATCAAGAAAGCTTTGGTGTTTTACGCGGGTAAAGCACCTAAAGGTGATAAAACCAATTGGATCATGCACGAGTATCGTTTGGCTGATGTAGATCGCACCATTCGCAAAAAGAACAGCTTAAGGTTGGATGATTGGGTGCTTTGCCGTATTTACAACAAGAAGGGCACAATTGAGAAACAACCAAGCAACGGTGTTGTTAACCGAAAAACAGAACATTCTGAAATCGAAGACAGGAAGCCGGAGATCGTGACACGTGGAGGTGGTCTTCCGCCACATCCTCCGCCGCAAACTACGGCTGGAATTAGGGATTACATGTACTTTGACACATCAGATTCGATTCCTAAGCTGCACACCGATTCGAGCTGTTCGGAGCACGTGGTATCACCGGAGTTTGCAAGTGAGGTGCAGAGTGAGCCTAAGTGGAATGAATGGGAGAAGAACCTTGAATTTCCTTATAATTACGTGGATGCCACCCTGAACACTGGTTTTGGCTTCCAAAATACTAATCCATTGCAAGATATGTTCATGTACTTGCCCAAAACCTTTTGA
Protein sequence

>Msa0374260

MASELQLPPGFRFHPTDEELVMHYLCRKCTSQPIAVPIIAEIDLYKYDPWDLPGMASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRTIRKKNSLRLDDWVLCRIYNKKGTIEKQPSNGVVNRKTEHSEIEDRKPEIVTRGGGLPPHPPPQTTAGIRDYMYFDTSDSIPKLHTDSSCSEHVVSPEFASEVQSEPKWNEWEKNLEFPYNYVDATLNTGFGFQNTNPLQDMFMYLPKTF*