AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0423350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423350 MtrunA17_Chr3g0124761 96.181 288 5 2 1 282 1 288 0.0 575
Msa0423350 MtrunA17_Chr8g0384721 63.300 297 80 7 1 280 1 285 3.49e-121 348
Msa0423350 MtrunA17_Chr3g0130731 59.609 307 84 6 1 282 1 292 1.53e-112 326
Msa0423350 MtrunA17_Chr2g0318101 63.452 197 52 5 6 191 14 201 1.85e-81 249
Msa0423350 MtrunA17_Chr8g0359921 70.552 163 46 2 3 164 10 171 3.10e-78 240
Msa0423350 MtrunA17_Chr7g0252971 61.957 184 59 2 4 176 5 188 1.06e-77 239
Msa0423350 MtrunA17_Chr2g0318081 67.901 162 48 2 3 163 12 170 4.10e-76 236
Msa0423350 MtrunA17_Chr4g0047841 66.480 179 35 3 6 160 14 191 7.11e-76 234
Msa0423350 MtrunA17_Chr5g0417791 58.289 187 70 3 5 183 1 187 1.69e-73 226
Msa0423350 MtrunA17_Chr2g0326361 60.465 172 64 2 3 170 10 181 1.88e-72 225
Msa0423350 MtrunA17_Chr7g0263931 64.198 162 54 2 3 160 7 168 7.64e-72 224
Msa0423350 MtrunA17_Chr4g0042561 62.893 159 57 2 2 158 4 162 1.58e-70 218
Msa0423350 MtrunA17_Chr5g0417001 39.918 243 133 4 7 237 14 255 7.22e-59 192
Msa0423350 MtrunA17_Chr6g0484441 55.901 161 65 2 4 163 2 157 7.81e-58 187
Msa0423350 MtrunA17_Chr6g0453451 54.037 161 72 2 4 163 17 176 9.46e-58 187
Msa0423350 MtrunA17_Chr3g0139331 48.259 201 88 4 4 195 8 201 9.05e-57 186
Msa0423350 MtrunA17_Chr2g0309891 53.552 183 76 6 5 184 4 180 1.48e-56 185
Msa0423350 MtrunA17_Chr8g0361731 46.392 194 85 3 9 188 16 204 9.01e-56 184
Msa0423350 MtrunA17_Chr6g0453131 52.147 163 70 2 7 161 15 177 9.10e-56 184
Msa0423350 MtrunA17_Chr4g0060931 53.416 161 73 2 4 163 14 173 1.44e-55 183
Msa0423350 MtrunA17_Chr5g0433781 57.500 160 62 4 5 161 4 160 1.60e-55 189
Msa0423350 MtrunA17_Chr3g0091921 52.601 173 74 3 4 175 13 178 2.77e-55 181
Msa0423350 MtrunA17_Chr2g0309331 41.202 233 107 6 2 216 5 225 8.91e-55 180
Msa0423350 MtrunA17_Chr1g0147421 53.254 169 66 4 4 166 24 185 1.79e-54 180
Msa0423350 MtrunA17_Chr7g0214071 55.357 168 64 3 4 168 12 171 3.63e-54 176
Msa0423350 MtrunA17_Chr3g0109821 56.875 160 64 3 5 161 4 161 5.88e-54 185
Msa0423350 MtrunA17_Chr4g0076731 55.000 160 64 3 9 166 56 209 6.84e-54 181
Msa0423350 MtrunA17_Chr7g0253011 53.049 164 71 2 5 163 15 177 1.37e-53 178
Msa0423350 MtrunA17_Chr2g0316971 54.658 161 67 3 4 160 20 178 1.39e-53 178
Msa0423350 MtrunA17_Chr6g0481091 52.500 160 70 3 3 159 2 158 3.73e-53 173
Msa0423350 MtrunA17_Chr5g0442771 49.711 173 77 3 9 171 20 192 1.07e-51 171
Msa0423350 MtrunA17_Chr5g0398971 50.955 157 68 3 7 158 7 159 2.36e-51 172
Msa0423350 MtrunA17_Chr4g0056541 49.390 164 74 3 1 160 1 159 4.44e-51 171
Msa0423350 MtrunA17_Chr4g0017921 52.564 156 64 3 7 158 8 157 4.75e-51 171
Msa0423350 MtrunA17_Chr8g0372121 48.193 166 77 3 7 168 6 166 5.23e-51 169
Msa0423350 MtrunA17_Chr4g0018391 48.171 164 76 3 1 160 1 159 1.98e-50 169
Msa0423350 MtrunA17_Chr6g0461661 51.899 158 72 2 5 159 16 172 2.99e-50 169
Msa0423350 MtrunA17_Chr2g0312321 40.486 247 119 7 4 249 8 227 8.73e-50 166
Msa0423350 MtrunA17_Chr2g0311651 39.695 262 126 8 9 241 24 282 9.08e-50 166
Msa0423350 MtrunA17_Chr5g0405211 48.276 174 75 4 7 176 8 170 1.42e-49 167
Msa0423350 MtrunA17_Chr1g0183741 50.955 157 67 2 7 160 10 159 1.57e-49 165
Msa0423350 MtrunA17_Chr5g0400461 52.174 161 61 5 7 157 6 160 4.12e-48 163
Msa0423350 MtrunA17_Chr1g0200561 48.447 161 74 3 1 157 13 168 6.89e-48 162
Msa0423350 MtrunA17_Chr7g0217721 44.571 175 80 3 4 163 16 188 8.45e-48 162
Msa0423350 MtrunA17_Chr2g0311661 50.588 170 70 4 9 164 23 192 9.43e-48 160
Msa0423350 MtrunA17_Chr3g0130101 48.148 162 78 3 1 159 1 159 1.41e-47 162
Msa0423350 MtrunA17_Chr7g0261411 51.316 152 64 2 7 155 10 154 1.79e-47 160
Msa0423350 MtrunA17_Chr8g0346001 44.751 181 86 4 6 172 14 194 2.10e-47 163
Msa0423350 MtrunA17_Chr7g0217711 53.030 132 61 1 4 134 16 147 2.50e-47 156
Msa0423350 MtrunA17_Chr4g0038751 45.556 180 85 4 1 176 9 179 6.57e-47 159
Msa0423350 MtrunA17_Chr8g0385991 48.734 158 74 3 6 158 13 168 3.34e-46 155
Msa0423350 MtrunA17_Chr5g0428991 52.532 158 65 4 6 158 24 176 1.23e-45 162
Msa0423350 MtrunA17_Chr1g0197351 50.955 157 71 3 7 157 42 198 1.60e-45 159
Msa0423350 MtrunA17_Chr3g0131911 50.920 163 66 4 6 158 13 171 1.92e-45 153
Msa0423350 MtrunA17_Chr3g0144271 56.391 133 54 2 3 131 19 151 2.49e-45 158
Msa0423350 MtrunA17_Chr4g0054791 46.927 179 85 4 6 178 5 179 3.39e-45 155
Msa0423350 MtrunA17_Chr8g0364791 47.134 157 77 3 6 159 5 158 9.97e-45 157
Msa0423350 MtrunA17_Chr1g0201021 50.323 155 69 4 9 159 21 171 2.00e-44 158
Msa0423350 MtrunA17_Chr1g0197361 49.359 156 71 5 9 160 10 161 2.28e-44 158
Msa0423350 MtrunA17_Chr3g0092671 50.000 160 72 5 5 160 3 158 3.19e-44 157
Msa0423350 MtrunA17_Chr3g0128151 51.282 156 66 4 7 157 22 172 8.02e-44 157
Msa0423350 MtrunA17_Chr3g0128111 46.405 153 72 4 10 157 45 192 2.37e-41 143
Msa0423350 MtrunA17_Chr8g0384201 45.223 157 80 4 6 159 5 158 3.08e-41 148
Msa0423350 MtrunA17_Chr8g0345671 47.403 154 66 5 7 154 11 155 1.34e-37 137
Msa0423350 MtrunA17_Chr4g0026141 36.486 222 112 7 7 200 5 225 5.44e-35 127
Msa0423350 MtrunA17_Chr4g0050701 42.675 157 76 3 7 157 11 159 1.72e-34 123
Msa0423350 MtrunA17_Chr3g0113001 50.450 111 54 1 55 164 13 123 4.71e-33 122
Msa0423350 MtrunA17_Chr2g0321631 43.030 165 80 6 8 161 5 166 7.80e-33 120
Msa0423350 MtrunA17_Chr2g0321741 44.203 138 65 4 35 170 20 147 1.35e-32 122
Msa0423350 MtrunA17_Chr8g0345691 41.935 155 75 5 6 154 11 156 2.37e-32 123
Msa0423350 MtrunA17_Chr7g0266701 35.519 183 102 7 7 174 4 185 2.00e-30 114
Msa0423350 MtrunA17_Chr8g0345711 43.411 129 66 4 7 129 12 139 1.39e-29 110
Msa0423350 MtrunA17_Chr8g0384351 36.464 181 91 6 3 182 6 163 1.89e-28 107
Msa0423350 MtrunA17_Chr8g0345731 43.284 134 68 4 7 132 24 157 3.43e-27 103
Msa0423350 MtrunA17_Chr8g0345701 39.597 149 67 6 1 129 1 146 1.38e-26 102
Msa0423350 MtrunA17_Chr8g0345721 37.419 155 61 4 10 129 38 191 1.90e-25 100
Msa0423350 MtrunA17_Chr8g0345741 41.935 124 65 4 18 135 2 124 1.06e-23 94.4
Msa0423350 MtrunA17_Chr3g0113031 46.602 103 49 3 70 168 3 103 1.13e-23 97.1
Msa0423350 MtrunA17_Chr7g0243371 57.333 75 29 1 60 131 17 91 9.51e-23 90.5
Msa0423350 MtrunA17_Chr7g0251661 32.215 149 94 4 3 147 6 151 2.91e-22 90.5
Msa0423350 MtrunA17_Chr3g0130321 32.121 165 96 4 1 155 1 159 1.07e-20 87.8
Msa0423350 MtrunA17_Chr7g0251671 30.345 145 94 4 7 147 10 151 7.11e-19 81.6
Msa0423350 MtrunA17_Chr7g0251651 32.836 134 83 4 5 134 16 146 1.14e-18 82.0
Msa0423350 MtrunA17_Chr3g0113011 50.980 51 25 0 4 54 16 66 3.04e-13 63.9
Msa0423350 MtrunA17_Chr8g0389661 32.237 152 78 6 5 132 45 195 2.14e-12 67.0
Msa0423350 MtrunA17_Chr4g0040541 31.944 144 79 5 7 132 48 190 3.00e-12 65.5
Msa0423350 MtrunA17_Chr7g0274971 30.994 171 100 8 13 173 11 173 3.84e-12 64.3
Msa0423350 MtrunA17_Chr8g0367761 31.034 145 78 6 7 132 68 209 1.54e-11 63.2
Msa0423350 MtrunA17_Chr4g0046431 31.034 145 78 6 7 132 68 209 2.84e-11 63.2
Msa0423350 MtrunA17_Chr1g0198751 34.028 144 74 7 7 132 58 198 3.64e-11 63.2
Msa0423350 MtrunA17_Chr3g0113041 54.545 44 20 0 11 54 23 66 3.73e-11 58.2
Msa0423350 MtrunA17_Chr1g0194791 50.877 57 27 1 2 57 41 97 7.38e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0423350 AT1G01720.1 70.608 296 66 7 1 282 1 289 3.37e-146 412
Msa0423350 AT1G77450.1 62.738 263 54 5 2 261 5 226 6.95e-110 318
Msa0423350 AT5G08790.1 65.370 257 56 6 1 249 1 232 1.65e-108 316
Msa0423350 AT5G63790.1 56.055 289 78 6 1 282 44 290 3.81e-102 301
Msa0423350 AT5G63790.2 56.055 289 78 6 1 282 54 300 4.85e-102 301
Msa0423350 AT3G15500.1 67.470 166 50 2 3 167 10 172 8.98e-77 236
Msa0423350 AT1G61110.1 69.880 166 39 2 6 160 15 180 1.14e-76 236
Msa0423350 AT1G52890.1 68.098 163 48 2 3 164 10 169 2.41e-76 235
Msa0423350 AT4G27410.2 67.485 163 49 2 3 164 10 169 9.11e-76 233
Msa0423350 AT3G04070.2 60.804 199 60 6 7 190 10 205 1.41e-74 231
Msa0423350 AT3G04070.1 57.009 214 60 6 7 190 10 221 2.67e-74 231
Msa0423350 AT4G27410.3 61.667 180 48 3 3 164 10 186 2.57e-72 225
Msa0423350 AT3G15510.1 65.169 178 47 5 11 176 21 195 4.70e-72 226
Msa0423350 AT1G69490.1 63.580 162 57 2 1 160 3 164 9.59e-71 219
Msa0423350 AT1G52880.1 67.683 164 43 2 11 164 21 184 2.82e-67 212
Msa0423350 AT3G18400.1 55.280 161 67 2 4 163 2 158 1.49e-58 189
Msa0423350 AT2G33480.2 59.355 155 54 3 5 158 13 159 6.72e-57 184
Msa0423350 AT5G61430.1 54.601 163 72 2 4 165 13 174 6.95e-57 186
Msa0423350 AT1G26870.1 49.733 187 81 3 7 184 16 198 2.12e-56 187
Msa0423350 AT2G02450.1 55.625 160 63 3 9 166 53 206 4.94e-56 185
Msa0423350 AT2G33480.1 58.065 155 58 3 5 158 13 161 7.40e-56 181
Msa0423350 AT2G02450.2 55.625 160 63 3 9 166 53 206 7.62e-56 185
Msa0423350 AT5G07680.1 54.601 163 72 2 4 165 14 175 8.64e-56 183
Msa0423350 AT5G07680.2 54.938 162 71 2 5 165 1 161 1.13e-55 182
Msa0423350 AT5G39610.1 55.556 162 70 2 5 165 18 178 2.42e-55 180
Msa0423350 AT5G39820.1 48.603 179 71 3 9 166 22 200 3.15e-55 182
Msa0423350 AT5G53950.1 55.625 160 55 3 7 157 17 169 1.20e-54 181
Msa0423350 AT2G43000.1 53.614 166 69 4 9 169 20 182 1.66e-54 178
Msa0423350 AT3G15170.1 51.220 164 76 2 4 164 17 179 4.48e-54 178
Msa0423350 AT1G65910.1 52.222 180 73 6 5 174 4 180 4.56e-54 185
Msa0423350 AT3G04060.1 56.129 155 65 2 5 157 18 171 7.02e-54 178
Msa0423350 AT3G03200.1 52.976 168 71 5 5 168 4 167 1.04e-53 181
Msa0423350 AT1G76420.1 53.750 160 67 3 3 159 18 173 1.13e-53 177
Msa0423350 AT3G17730.1 50.000 174 81 4 5 175 4 174 1.18e-53 175
Msa0423350 AT2G24430.2 53.012 166 65 3 4 163 13 171 1.23e-53 177
Msa0423350 AT2G24430.1 53.012 166 65 3 4 163 13 171 1.23e-53 177
Msa0423350 AT5G18270.2 53.892 167 73 3 5 168 19 184 1.76e-53 177
Msa0423350 AT5G17260.1 50.575 174 78 5 5 174 4 173 2.25e-53 181
Msa0423350 AT5G13180.1 57.325 157 57 3 5 158 12 161 2.62e-53 174
Msa0423350 AT5G18270.1 53.892 167 73 3 5 168 19 184 2.79e-53 177
Msa0423350 AT3G29035.1 62.595 131 48 1 2 131 19 149 3.52e-52 173
Msa0423350 AT1G79580.3 50.000 162 70 3 2 158 12 167 7.02e-52 174
Msa0423350 AT1G79580.5 50.000 162 70 3 2 158 12 167 7.02e-52 174
Msa0423350 AT1G79580.4 50.000 162 70 3 2 158 12 167 7.02e-52 174
Msa0423350 AT1G79580.2 50.000 162 70 3 2 158 12 167 7.02e-52 174
Msa0423350 AT1G79580.1 50.000 162 70 3 2 158 12 167 7.02e-52 174
Msa0423350 AT4G17980.1 53.205 156 67 3 7 157 6 160 2.16e-51 169
Msa0423350 AT4G17980.2 53.205 156 67 3 7 157 6 160 2.93e-51 170
Msa0423350 AT4G10350.1 53.205 156 66 3 7 158 9 161 5.82e-51 171
Msa0423350 AT1G62700.1 50.000 162 72 3 1 158 1 157 6.13e-50 169
Msa0423350 AT1G62700.2 50.000 162 72 3 1 158 1 157 6.13e-50 169
Msa0423350 AT1G33280.1 50.932 161 69 3 2 158 3 157 6.45e-50 167
Msa0423350 AT5G62380.2 50.000 164 73 3 1 160 1 159 9.77e-50 168
Msa0423350 AT5G62380.1 50.000 164 73 3 1 160 1 159 9.77e-50 168
Msa0423350 AT1G12260.2 50.307 163 70 4 1 158 1 157 1.20e-49 167
Msa0423350 AT2G18060.3 50.000 158 70 3 7 160 9 161 1.21e-49 168
Msa0423350 AT2G18060.1 50.000 158 70 3 7 160 9 161 1.21e-49 168
Msa0423350 AT3G10490.1 51.948 154 69 3 7 157 27 178 1.44e-49 164
Msa0423350 AT1G56010.2 51.282 156 74 2 4 157 16 171 1.61e-49 166
Msa0423350 AT1G71930.2 50.323 155 68 3 7 157 9 158 1.65e-49 166
Msa0423350 AT1G71930.1 50.323 155 68 3 7 157 9 158 1.65e-49 166
Msa0423350 AT3G10480.1 50.943 159 73 3 2 157 22 178 2.03e-49 169
Msa0423350 AT1G12260.1 50.307 163 70 4 1 158 1 157 2.26e-49 168
Msa0423350 AT3G10480.2 50.314 159 73 3 2 157 22 177 2.36e-49 169
Msa0423350 AT4G36160.2 51.282 156 67 3 7 158 14 164 2.75e-49 167
Msa0423350 AT4G36160.1 51.282 156 67 3 7 158 10 160 2.79e-49 167
Msa0423350 AT4G36160.3 51.282 156 67 3 7 158 10 160 2.79e-49 167
Msa0423350 AT5G66300.1 49.102 167 74 4 7 169 12 171 8.25e-49 164
Msa0423350 AT3G10500.1 51.235 162 73 3 2 160 4 162 8.45e-49 170
Msa0423350 AT2G46770.1 47.904 167 73 4 6 158 15 181 1.21e-48 165
Msa0423350 AT1G54330.1 51.534 163 70 3 5 164 4 160 1.40e-48 163
Msa0423350 AT5G46590.1 52.903 155 67 4 7 157 6 158 1.46e-48 163
Msa0423350 AT3G12977.1 50.323 155 74 3 4 157 15 167 1.55e-48 162
Msa0423350 AT5G04410.1 51.235 162 73 3 2 160 4 162 1.83e-48 169
Msa0423350 AT3G10490.2 51.948 154 69 3 7 157 27 178 2.80e-48 166
Msa0423350 AT1G33060.1 53.205 156 63 4 7 157 24 174 3.09e-48 170
Msa0423350 AT1G33060.2 53.205 156 63 4 7 157 24 174 3.29e-48 170
Msa0423350 AT4G35580.2 54.487 156 61 4 7 157 9 159 3.99e-48 168
Msa0423350 AT4G35580.3 54.487 156 61 4 7 157 9 159 4.45e-48 167
Msa0423350 AT4G35580.1 54.487 156 61 4 7 157 9 159 5.23e-48 167
Msa0423350 AT2G17040.1 47.590 166 74 4 1 162 1 157 5.51e-48 161
Msa0423350 AT1G32770.1 37.402 254 129 5 6 229 15 268 1.51e-47 162
Msa0423350 AT5G46590.2 54.286 140 60 2 7 142 6 145 2.79e-47 159
Msa0423350 AT4G28530.1 48.538 171 62 3 6 157 9 172 1.29e-46 160
Msa0423350 AT5G24590.2 46.591 176 83 4 7 176 13 183 4.95e-46 160
Msa0423350 AT1G34180.3 49.351 154 72 4 9 159 18 168 5.49e-46 160
Msa0423350 AT3G61910.1 43.750 176 85 4 6 167 10 185 1.12e-45 157
Msa0423350 AT1G34190.1 49.677 155 72 4 9 160 18 169 1.30e-45 161
Msa0423350 AT3G12910.1 50.000 164 66 5 9 157 23 185 2.22e-45 155
Msa0423350 AT1G34180.1 49.351 154 72 4 9 159 18 168 3.65e-45 160
Msa0423350 AT1G32510.1 50.000 162 67 4 7 157 6 164 7.60e-45 153
Msa0423350 AT3G10480.3 43.229 192 71 4 2 157 22 211 2.67e-44 157
Msa0423350 AT1G34180.4 45.509 167 73 4 9 160 18 181 3.74e-44 155
Msa0423350 AT1G34180.2 45.783 166 72 4 9 159 18 180 2.06e-43 155
Msa0423350 AT3G49530.2 44.186 172 89 3 7 174 13 181 3.61e-43 152
Msa0423350 AT5G09330.5 46.497 157 78 3 6 159 5 158 6.61e-43 153
Msa0423350 AT5G09330.2 46.497 157 78 3 6 159 5 158 6.61e-43 153
Msa0423350 AT5G09330.4 46.497 157 78 3 6 159 5 158 6.61e-43 153
Msa0423350 AT5G09330.3 46.497 157 78 3 6 159 5 158 6.61e-43 153
Msa0423350 AT5G09330.1 46.497 157 78 3 6 159 5 158 6.61e-43 153
Msa0423350 AT3G49530.1 44.186 172 89 3 7 174 13 181 7.20e-43 152
Msa0423350 AT5G64060.1 45.860 157 79 4 6 159 5 158 1.21e-42 149
Msa0423350 AT2G27300.1 37.168 226 114 7 7 230 14 213 3.66e-40 142
Msa0423350 AT1G32870.2 50.955 157 71 4 7 160 10 163 8.83e-39 142
Msa0423350 AT1G32870.1 50.955 157 71 4 7 160 10 163 9.29e-39 142
Msa0423350 AT1G32870.3 50.955 157 71 4 7 160 46 199 1.31e-38 142
Msa0423350 AT5G22290.1 39.326 178 89 6 9 177 23 190 1.03e-37 136
Msa0423350 AT3G44290.2 41.718 163 79 4 9 165 16 168 1.62e-37 132
Msa0423350 AT3G44290.1 41.718 163 79 4 9 165 16 168 1.05e-36 133
Msa0423350 AT5G64530.1 39.884 173 78 4 5 163 1 161 2.95e-34 123
Msa0423350 AT5G61430.2 53.390 118 41 3 55 165 1 111 3.43e-34 125
Msa0423350 AT5G04395.1 41.558 154 73 3 2 138 23 176 1.04e-33 121
Msa0423350 AT5G64530.2 47.727 132 54 3 5 133 1 120 4.11e-33 119
Msa0423350 AT2G33480.3 57.000 100 39 2 60 158 8 104 1.25e-32 119
Msa0423350 AT5G22380.1 35.496 262 122 14 1 246 1 231 2.07e-32 119
Msa0423350 AT3G44350.2 38.095 189 101 8 1 180 1 182 6.13e-32 118
Msa0423350 AT4G10350.2 54.286 105 44 2 55 158 13 114 3.13e-31 118
Msa0423350 AT1G56010.1 52.885 104 48 1 55 157 1 104 3.30e-31 117
Msa0423350 AT4G28530.2 38.095 168 47 2 6 157 9 135 1.28e-30 117
Msa0423350 AT3G12977.2 52.427 103 46 3 56 157 14 114 2.68e-29 111
Msa0423350 AT3G44350.1 40.845 142 71 5 1 133 1 138 3.97e-29 108
Msa0423350 AT4G01520.1 38.710 155 79 5 8 154 5 151 1.62e-26 105
Msa0423350 AT4G01550.1 38.065 155 81 4 10 157 7 153 3.35e-26 107
Msa0423350 AT4G01540.4 39.216 153 77 5 10 154 7 151 1.70e-25 104
Msa0423350 AT4G01540.3 39.216 153 77 5 10 154 7 151 2.30e-25 104
Msa0423350 AT4G01540.2 39.216 153 77 5 10 154 7 151 2.32e-25 104
Msa0423350 AT3G04420.2 40.000 130 73 3 5 129 1 130 2.92e-25 102
Msa0423350 AT4G01540.1 39.216 153 77 5 10 154 7 151 3.19e-25 104
Msa0423350 AT3G04420.1 40.000 130 73 3 5 129 1 130 7.46e-25 102
Msa0423350 AT1G02230.1 40.000 130 67 5 8 129 4 130 7.62e-24 99.8
Msa0423350 AT5G14000.1 33.714 175 104 5 5 175 13 179 1.85e-23 95.5
Msa0423350 AT2G43000.2 48.113 106 47 4 69 169 2 104 3.32e-23 94.4
Msa0423350 AT5G14000.2 37.241 145 86 3 5 146 13 155 1.30e-22 91.7
Msa0423350 AT1G02220.1 38.462 130 72 4 5 129 1 127 1.04e-20 91.3
Msa0423350 AT1G02250.1 40.000 130 67 5 8 129 4 130 1.21e-20 90.9
Msa0423350 AT1G01010.1 35.185 162 74 7 10 154 6 153 4.82e-20 89.7
Msa0423350 AT3G10490.4 50.633 79 36 2 80 157 2 78 4.47e-18 83.2
Msa0423350 AT3G10490.3 50.633 79 36 2 80 157 2 78 4.47e-18 83.2
Msa0423350 AT3G56530.1 33.333 159 91 6 4 155 49 199 1.63e-17 81.3
Msa0423350 AT5G50820.1 35.821 134 69 5 5 131 15 138 2.38e-17 78.6
Msa0423350 AT3G04430.1 37.121 132 68 5 13 130 6 136 1.07e-15 74.3
Msa0423350 AT2G18060.2 44.156 77 37 2 85 160 2 73 4.37e-15 73.9
Msa0423350 AT4G29230.1 33.775 151 74 7 7 132 48 197 4.27e-13 69.3
Msa0423350 AT4G29230.2 33.775 151 74 7 7 132 47 196 4.47e-13 69.3
Msa0423350 AT4G29230.3 33.775 151 74 7 7 132 48 197 4.82e-13 69.3
Msa0423350 AT5G22290.2 37.000 100 45 5 86 177 2 91 9.82e-13 66.6
Msa0423350 AT5G56620.3 30.519 154 78 6 7 132 43 195 1.02e-11 65.1
Msa0423350 AT5G56620.2 30.519 154 78 6 7 132 43 195 1.27e-11 64.7
Msa0423350 AT5G56620.1 30.519 154 78 6 7 132 43 195 1.70e-11 64.3
Msa0423350 AT5G14490.2 31.973 147 75 7 7 132 55 197 2.77e-11 63.2
Msa0423350 AT5G14490.4 31.973 147 75 7 7 132 55 197 2.78e-11 63.5
Msa0423350 AT5G14490.1 31.973 147 75 7 7 132 58 200 2.82e-11 63.5
Msa0423350 AT5G14490.3 31.973 147 75 7 7 132 58 200 4.29e-11 63.2

Find 140 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGCAATGGATTAGTATTT+TGG 0.127740 3_2:+73149309 None:intergenic
CGCAAACTACGGCTGGAATT+AGG 0.167335 3_2:-73149520 Msa0423350:CDS
TTTCAATGCTCAAAAGGTTT+TGG 0.220852 3_2:+73149268 None:intergenic
GCCACCCTGAACACTGGTTT+TGG 0.242265 3_2:-73149335 Msa0423350:CDS
TTGATAGTAAGATTTGATTT+TGG 0.249324 3_2:+73150834 None:intergenic
GATAGTTTAAAACGGTTATA+TGG 0.260762 3_2:-73148512 Msa0423350:three_prime_UTR
TTCTTGATTCCAACCGGTTT+AGG 0.266059 3_2:+73150318 None:intergenic
GGGCGGCTGGGTCTGGATAT+TGG 0.274315 3_2:-73150374 Msa0423350:CDS
TTTATAGGTATGGCTTCTTA+TGG 0.275721 3_2:-73150462 Msa0423350:intron
TCAAGGCCGAACCGGGCGGC+TGG 0.280890 3_2:-73150387 Msa0423350:CDS
ACATAAAATTGGTACTAAAA+AGG 0.281199 3_2:+73148591 None:intergenic
CCGAACCGGGCGGCTGGGTC+TGG 0.306529 3_2:-73150381 Msa0423350:CDS
TCTTGATTCCAACCGGTTTA+GGG 0.332888 3_2:+73150319 None:intergenic
GCAAACTACGGCTGGAATTA+GGG 0.333355 3_2:-73149519 Msa0423350:CDS
CGGTTCGGCCTTGAACCGTT+TGG 0.337242 3_2:+73150396 None:intergenic
AGTTATTGTAGGAAGTAGAT+AGG 0.344409 3_2:-73148814 Msa0423350:three_prime_UTR
CCATGATTCTGTCAATCTTA+TGG 0.347093 3_2:-73149156 Msa0423350:three_prime_UTR
TGCCCTTCTTGTTGTAAATA+CGG 0.356578 3_2:+73149648 None:intergenic
GGAAGCCAAAACCAGTGTTC+AGG 0.356962 3_2:+73149330 None:intergenic
TTAAAACGGTTATATGGAAA+TGG 0.361510 3_2:-73148506 Msa0423350:three_prime_UTR
GTCCAAGCCAGAGAAAATTA+TGG 0.366814 3_2:-73149010 Msa0423350:three_prime_UTR
GGTTCGGCCTTGAACCGTTT+GGG 0.375212 3_2:+73150397 None:intergenic
CATGTGCATATAGTTATTGT+AGG 0.381321 3_2:-73148825 Msa0423350:three_prime_UTR
ATCTATATAAATATGATCCT+TGG 0.383433 3_2:-73150650 Msa0423350:CDS
AGAGATATTGTGCACTGTTT+TGG 0.385960 3_2:-73148905 Msa0423350:three_prime_UTR
GTGTCCATACAATATTGTTA+TGG 0.389687 3_2:-73149048 Msa0423350:three_prime_UTR
GCCAGAGAAAATTATGGAAA+AGG 0.391154 3_2:-73149004 Msa0423350:three_prime_UTR
GTGGCATCCACGTAATTATA+AGG 0.393502 3_2:+73149353 None:intergenic
TCTGGATATTGGAAGGCAAC+CGG 0.400133 3_2:-73150363 Msa0423350:CDS
CGGTTCATCCACATTATATA+GGG 0.403403 3_2:+73148877 None:intergenic
CCGGTTCATCCACATTATAT+AGG 0.405782 3_2:+73148876 None:intergenic
CTCGAATCGGTGTGCAGCTT+AGG 0.410548 3_2:+73149464 None:intergenic
TGAAAGAAAATAGTATCAAT+AGG 0.413399 3_2:-73148692 Msa0423350:three_prime_UTR
TGATACCGTGTATGTATGTT+TGG 0.417203 3_2:+73149128 None:intergenic
ACCGGTTTAGGGTGACCTAT+TGG 0.422320 3_2:+73150330 None:intergenic
CCAGACCCAGCCGCCCGGTT+CGG 0.426418 3_2:+73150381 None:intergenic
CGTAATTATAAGGAAATTCA+AGG 0.432406 3_2:+73149363 None:intergenic
CCAGCCGTAGTTTGCGGCGG+AGG 0.437220 3_2:+73149527 None:intergenic
TAATCCATAACAATATTGTA+TGG 0.439956 3_2:+73149044 None:intergenic
ACAAAATCATGATATCATCT+TGG 0.440420 3_2:-73149219 Msa0423350:three_prime_UTR
CAAACGGTTCAAGGCCGAAC+CGG 0.447727 3_2:-73150395 Msa0423350:CDS
CTGGATATTGGAAGGCAACC+GGG 0.449962 3_2:-73150362 Msa0423350:CDS
TTTGTCTTTCAATGCTCAAA+AGG 0.450438 3_2:+73149262 None:intergenic
CAAGGCCGAACCGGGCGGCT+GGG 0.451424 3_2:-73150386 Msa0423350:CDS
TATTCTTCATTTCATAAACT+AGG 0.456062 3_2:-73150892 Msa0423350:five_prime_UTR
CAAAATCAAAATATATTGTA+TGG 0.458032 3_2:+73150864 None:intergenic
TAGGCTGCGACGTGCATTTG+CGG 0.459621 3_2:+73150700 None:intergenic
ATTCTTCATTTCATAAACTA+GGG 0.460543 3_2:-73150891 Msa0423350:five_prime_UTR
AAAGCTTTCTTGATTCCAAC+CGG 0.462419 3_2:+73150312 None:intergenic
CCTATATAATGTGGATGAAC+CGG 0.462838 3_2:-73148876 Msa0423350:three_prime_UTR
GATCATGCACGAGTATCGTT+TGG 0.466085 3_2:-73150244 Msa0423350:CDS
CTAAAGGTGATAAAACCAAT+TGG 0.468401 3_2:-73150266 Msa0423350:CDS
ACCTATTGGTTTATCCGCCC+CGG 0.468728 3_2:+73150344 None:intergenic
GTAGTTTGCGGCGGAGGATG+TGG 0.472297 3_2:+73149533 None:intergenic
ACCAATAGGTCACCCTAAAC+CGG 0.472837 3_2:-73150331 Msa0423350:CDS
CTAATTCCAGCCGTAGTTTG+CGG 0.474275 3_2:+73149521 None:intergenic
TATGGCTTCTTATGGAGAAA+AGG 0.474341 3_2:-73150454 Msa0423350:CDS
CCAGAGAAAATTATGGAAAA+GGG 0.479936 3_2:-73149003 Msa0423350:three_prime_UTR
TCTATATAAATATGATCCTT+GGG 0.481892 3_2:-73150649 Msa0423350:CDS
GTGAGCCTAAGTGGAATGAA+TGG 0.482300 3_2:-73149394 Msa0423350:CDS
GAAGCCAAAACCAGTGTTCA+GGG 0.483454 3_2:+73149331 None:intergenic
GGTTGGAATCAAGAAAGCTT+TGG 0.483861 3_2:-73150310 Msa0423350:CDS
GAAAGTACCCAAACGGTTCA+AGG 0.487674 3_2:-73150404 Msa0423350:CDS
AAGCTGCAAATGCATGTGTC+GGG 0.491202 3_2:-73148962 Msa0423350:three_prime_UTR
AGGTGCAGAGTGAGCCTAAG+TGG 0.496331 3_2:-73149403 Msa0423350:CDS
CCTCCGCCGCAAACTACGGC+TGG 0.497456 3_2:-73149527 Msa0423350:CDS
ATACTCGTGCATGATCCAAT+TGG 0.497532 3_2:+73150251 None:intergenic
AAAGACAAAGTACATTGGTC+AGG 0.500105 3_2:-73149248 Msa0423350:three_prime_UTR
TTCTCCCATTCATTCCACTT+AGG 0.500482 3_2:+73149389 None:intergenic
TTGCCGTATTTACAACAAGA+AGG 0.503330 3_2:-73149651 Msa0423350:CDS
CGAGCTCCTCATCCGTTGGA+TGG 0.515341 3_2:+73150739 None:intergenic
ATGCAGTTGATAGTTTAAAA+CGG 0.516740 3_2:-73148520 Msa0423350:three_prime_UTR
GCACACCGATTCGAGCTGTT+CGG 0.523824 3_2:-73149456 Msa0423350:CDS
CCTCCACGTGTCACGATCTC+CGG 0.524239 3_2:+73149566 None:intergenic
TACTGTCAATCCAACATGCC+GGG 0.524253 3_2:-73149184 Msa0423350:three_prime_UTR
ATCCGAGCTTCAATTACCAC+CGG 0.527594 3_2:-73150772 Msa0423350:CDS
ACATCCTCCGCCGCAAACTA+CGG 0.532859 3_2:-73149531 Msa0423350:CDS
TTCGGAGCACGTGGTATCAC+CGG 0.534411 3_2:-73149438 Msa0423350:CDS
CATGGTGGCACCCGGCATGT+TGG 0.534813 3_2:+73149174 None:intergenic
GTTATTGTAGGAAGTAGATA+GGG 0.538025 3_2:-73148813 Msa0423350:three_prime_UTR
GACAGAATCATGGTGGCACC+CGG 0.540425 3_2:+73149166 None:intergenic
CAGATTCCATCCAACGGATG+AGG 0.542143 3_2:-73150745 Msa0423350:CDS
AAACGGTTCAAGGCCGAACC+GGG 0.545704 3_2:-73150394 Msa0423350:CDS
TGAGCCTAAGTGGAATGAAT+GGG 0.547748 3_2:-73149393 Msa0423350:CDS
ACCGGGGCGGATAAACCAAT+AGG 0.550145 3_2:-73150345 Msa0423350:CDS
GCGATGATCGGAACGGCGAT+AGG 0.550339 3_2:+73150681 None:intergenic
ATACTGAGATATATTAATCA+AGG 0.552042 3_2:+73148750 None:intergenic
CACATGCTAATCCTAGAGAC+AGG 0.555709 3_2:+73148842 None:intergenic
TGCACCTCACTTGCAAACTC+CGG 0.557338 3_2:+73149419 None:intergenic
TACGCGGGTAAAGCACCTAA+AGG 0.558141 3_2:-73150282 Msa0423350:CDS
GAGATCGTGACACGTGGAGG+TGG 0.558979 3_2:-73149563 Msa0423350:CDS
CTTCTTATGGAGAAAAGGAA+TGG 0.562020 3_2:-73150449 Msa0423350:CDS
TTTGGGTACTTTCTGTCTCG+TGG 0.562928 3_2:+73150414 None:intergenic
GTGCTCCGAACAGCTCGAAT+CGG 0.563123 3_2:+73149451 None:intergenic
TGCCGTATTTACAACAAGAA+GGG 0.564535 3_2:-73149650 Msa0423350:CDS
ATCACCGGAGTTTGCAAGTG+AGG 0.564595 3_2:-73149423 Msa0423350:CDS
AACATTCTGAAATCGAAGAC+AGG 0.566257 3_2:-73149592 Msa0423350:CDS
GTGGATGCCACCCTGAACAC+TGG 0.570340 3_2:-73149341 Msa0423350:CDS
GATTTACCTGGGAGGTCCCA+AGG 0.574322 3_2:+73150633 None:intergenic
GCCCGGTGGTAATTGAAGCT+CGG 0.575509 3_2:+73150770 None:intergenic
TGAAATCGAAGACAGGAAGC+CGG 0.575677 3_2:-73149585 Msa0423350:CDS
ATCACGAGCTCCTCATCCGT+TGG 0.576098 3_2:+73150735 None:intergenic
AATATCCAGACCCAGCCGCC+CGG 0.582754 3_2:+73150376 None:intergenic
CCATAAGATTGACAGAATCA+TGG 0.582984 3_2:+73149156 None:intergenic
TGGTACGTCCCTATATAATG+TGG 0.583136 3_2:-73148885 Msa0423350:three_prime_UTR
TATGATCCTTGGGACCTCCC+AGG 0.585959 3_2:-73150639 Msa0423350:intron
TTACTGTCAATCCAACATGC+CGG 0.586835 3_2:-73149185 Msa0423350:three_prime_UTR
AGATCAATTTCAGCGATGAT+CGG 0.587191 3_2:+73150669 None:intergenic
TTGTATGGACACACTTGCAC+AGG 0.587245 3_2:+73149059 None:intergenic
AAGAATACTAAGAAGAACTA+CGG 0.587660 3_2:+73150908 None:intergenic
CGAGACAGAAAGTACCCAAA+CGG 0.588955 3_2:-73150411 Msa0423350:CDS
TACATGAACATATCTTGCAA+TGG 0.597049 3_2:+73149296 None:intergenic
GTTGGATGGAATCTGAAGCC+CGG 0.600613 3_2:+73150753 None:intergenic
TGGATATTGGAAGGCAACCG+GGG 0.604916 3_2:-73150361 Msa0423350:CDS
ATAGGTCACCCTAAACCGGT+TGG 0.608554 3_2:-73150327 Msa0423350:CDS
GAAGCTGCAAATGCATGTGT+CGG 0.610621 3_2:-73148963 Msa0423350:three_prime_UTR
GTTTGCGGCGGAGGATGTGG+CGG 0.614306 3_2:+73149536 None:intergenic
TCCGAGCTTCAATTACCACC+GGG 0.623307 3_2:-73150771 Msa0423350:CDS
GAGACAGGTAAAATATGCAC+CGG 0.628058 3_2:+73148857 None:intergenic
TGAATTTCCTTATAATTACG+TGG 0.635048 3_2:-73149360 Msa0423350:CDS
AAGCCGGAGATCGTGACACG+TGG 0.637296 3_2:-73149569 Msa0423350:CDS
CATTGAAAGACAAAGTACAT+TGG 0.641102 3_2:-73149253 Msa0423350:three_prime_UTR
TTCGAGCTGTTCGGAGCACG+TGG 0.644987 3_2:-73149447 Msa0423350:CDS
ATTCCAGCCGTAGTTTGCGG+CGG 0.647744 3_2:+73149524 None:intergenic
GGGCTTCAGATTCCATCCAA+CGG 0.653227 3_2:-73150751 Msa0423350:CDS
CCGGAGATCGTGACACGTGG+AGG 0.654065 3_2:-73149566 Msa0423350:CDS
ACTAAGAAGAACTACGGTGG+CGG 0.655257 3_2:+73150914 None:intergenic
GGCTGGGTCTGGATATTGGA+AGG 0.659634 3_2:-73150370 Msa0423350:CDS
TATCACACAGATGCATTGCA+CGG 0.670981 3_2:-73149110 Msa0423350:three_prime_UTR
AATTTCAGCGATGATCGGAA+CGG 0.679262 3_2:+73150674 None:intergenic
ATTAAGTTTAGCAATCATAG+CGG 0.681885 3_2:-73150808 Msa0423350:five_prime_UTR
CGGTTCAAGGCCGAACCGGG+CGG 0.700064 3_2:-73150391 Msa0423350:CDS
ATCCATGTGATTTACCTGGG+AGG 0.702963 3_2:+73150625 None:intergenic
ATATTGGAAGGCAACCGGGG+CGG 0.704098 3_2:-73150358 Msa0423350:CDS
TCAATCCAAACATACATACA+CGG 0.711146 3_2:-73149133 Msa0423350:three_prime_UTR
AGCTGCAAATGCATGTGTCG+GGG 0.713068 3_2:-73148961 Msa0423350:three_prime_UTR
GGATGGAATCTGAAGCCCGG+TGG 0.713450 3_2:+73150756 None:intergenic
GCCAAAACCAGTGTTCAGGG+TGG 0.722298 3_2:+73149334 None:intergenic
AATACTAAGAAGAACTACGG+TGG 0.747559 3_2:+73150911 None:intergenic
TAAGATTGACAGAATCATGG+TGG 0.749440 3_2:+73149159 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATATTATGTTATTTTAT+AGG - chr3_2:73148911-73148930 Msa0423350:three_prime_UTR 10.0%
!!! CTTTTATTATGTTAAATATT+TGG - chr3_2:73149644-73149663 Msa0423350:CDS 10.0%
!! CAAAATCAAAATATATTGTA+TGG + chr3_2:73148527-73148546 None:intergenic 15.0%
!!! ATTATGTTATTTTATAGGTA+TGG - chr3_2:73148916-73148935 Msa0423350:three_prime_UTR 15.0%
!!! CTTAATTCTAAAAATTAGAA+GGG + chr3_2:73149234-73149253 None:intergenic 15.0%
!!! TCTTAATTCTAAAAATTAGA+AGG + chr3_2:73149235-73149254 None:intergenic 15.0%
!! AAAACATGAAATTGATTAAA+TGG - chr3_2:73149683-73149702 Msa0423350:intron 15.0%
!! TATTCTTCATTTCATAAACT+AGG - chr3_2:73148496-73148515 Msa0423350:three_prime_UTR 20.0%
!! ATTCTTCATTTCATAAACTA+GGG - chr3_2:73148497-73148516 Msa0423350:three_prime_UTR 20.0%
!!! TTGATAGTAAGATTTGATTT+TGG + chr3_2:73148557-73148576 None:intergenic 20.0%
!! ATCTATATAAATATGATCCT+TGG - chr3_2:73148738-73148757 Msa0423350:three_prime_UTR 20.0%
!! TCTATATAAATATGATCCTT+GGG - chr3_2:73148739-73148758 Msa0423350:three_prime_UTR 20.0%
!! AATAATACTTAATAAGTGGT+TGG + chr3_2:73149546-73149565 None:intergenic 20.0%
!! GGAAAATAATACTTAATAAG+TGG + chr3_2:73149550-73149569 None:intergenic 20.0%
!!! AGTTTGACTTGAATTTTATT+AGG - chr3_2:73149607-73149626 Msa0423350:CDS 20.0%
!!! ATCAATTTCATGTTTTTCTA+AGG + chr3_2:73149679-73149698 None:intergenic 20.0%
!! TAATCCATAACAATATTGTA+TGG + chr3_2:73150347-73150366 None:intergenic 20.0%
!! ATACTGAGATATATTAATCA+AGG + chr3_2:73150641-73150660 None:intergenic 20.0%
!! TGAAAGAAAATAGTATCAAT+AGG - chr3_2:73150696-73150715 Msa0423350:CDS 20.0%
!! ATAAAAAAAAGAGAGAAAAG+GGG + chr3_2:73150726-73150745 None:intergenic 20.0%
!! CATAAAAAAAAGAGAGAAAA+GGG + chr3_2:73150727-73150746 None:intergenic 20.0%
!! ACATAAAAAAAAGAGAGAAA+AGG + chr3_2:73150728-73150747 None:intergenic 20.0%
!! ACATAAAATTGGTACTAAAA+AGG + chr3_2:73150800-73150819 None:intergenic 20.0%
!!! TTTAGTACCAATTTTATGTT+TGG - chr3_2:73150801-73150820 Msa0423350:five_prime_UTR 20.0%
!! TAAAAAGCCAAACATAAAAT+TGG + chr3_2:73150811-73150830 None:intergenic 20.0%
! AAGAATACTAAGAAGAACTA+CGG + chr3_2:73148483-73148502 None:intergenic 25.0%
! ATTAAGTTTAGCAATCATAG+CGG - chr3_2:73148580-73148599 Msa0423350:three_prime_UTR 25.0%
!! TTTGTTGAAAACTACCATTT+TGG - chr3_2:73149271-73149290 Msa0423350:exon 25.0%
!! GATGTTACTATTCTTCATTT+TGG + chr3_2:73149479-73149498 None:intergenic 25.0%
!!! TTTCAGAATGTTCTGTTTTT+CGG + chr3_2:73149788-73149807 None:intergenic 25.0%
! CGTAATTATAAGGAAATTCA+AGG + chr3_2:73150028-73150047 None:intergenic 25.0%
! TGAATTTCCTTATAATTACG+TGG - chr3_2:73150028-73150047 Msa0423350:intron 25.0%
! ACAAAATCATGATATCATCT+TGG - chr3_2:73150169-73150188 Msa0423350:intron 25.0%
!!! ATGCAGTTGATAGTTTAAAA+CGG - chr3_2:73150868-73150887 Msa0423350:five_prime_UTR 25.0%
!! GATAGTTTAAAACGGTTATA+TGG - chr3_2:73150876-73150895 Msa0423350:five_prime_UTR 25.0%
! TTAAAACGGTTATATGGAAA+TGG - chr3_2:73150882-73150901 Msa0423350:five_prime_UTR 25.0%
! AATCATAGCGGAAAAAACAA+TGG - chr3_2:73148592-73148611 Msa0423350:three_prime_UTR 30.0%
TTTATAGGTATGGCTTCTTA+TGG - chr3_2:73148926-73148945 Msa0423350:three_prime_UTR 30.0%
!!! CAATTGGTTTTATCACCTTT+AGG + chr3_2:73149124-73149143 None:intergenic 30.0%
CTAAAGGTGATAAAACCAAT+TGG - chr3_2:73149122-73149141 Msa0423350:three_prime_UTR 30.0%
TTGGTCCAAATTAAAAGACA+GGG + chr3_2:73149307-73149326 None:intergenic 30.0%
ATTGGTCCAAATTAAAAGAC+AGG + chr3_2:73149308-73149327 None:intergenic 30.0%
ATTTGGACCAATCAATGATT+TGG - chr3_2:73149316-73149335 Msa0423350:CDS 30.0%
CTCTTGATTGATATACTTTG+TGG - chr3_2:73149410-73149429 Msa0423350:CDS 30.0%
!! TATACTTTGTGGCTGATTTT+CGG - chr3_2:73149421-73149440 Msa0423350:CDS 30.0%
GTGATGTGATGTTAATACTT+AGG + chr3_2:73149449-73149468 None:intergenic 30.0%
!!! AATGGTTCTGATTTTACAGT+TGG - chr3_2:73149701-73149720 Msa0423350:intron 30.0%
! TGATTTTACAGTTGGATGAT+TGG - chr3_2:73149709-73149728 Msa0423350:intron 30.0%
! GATTTTACAGTTGGATGATT+GGG - chr3_2:73149710-73149729 Msa0423350:intron 30.0%
!!! CTTGCAATGGATTAGTATTT+TGG + chr3_2:73150082-73150101 None:intergenic 30.0%
TACATGAACATATCTTGCAA+TGG + chr3_2:73150095-73150114 None:intergenic 30.0%
! TTCAATGCTCAAAAGGTTTT+GGG + chr3_2:73150122-73150141 None:intergenic 30.0%
! TTTCAATGCTCAAAAGGTTT+TGG + chr3_2:73150123-73150142 None:intergenic 30.0%
TTTGTCTTTCAATGCTCAAA+AGG + chr3_2:73150129-73150148 None:intergenic 30.0%
CATTGAAAGACAAAGTACAT+TGG - chr3_2:73150135-73150154 Msa0423350:intron 30.0%
TCAATCCAAACATACATACA+CGG - chr3_2:73150255-73150274 Msa0423350:CDS 30.0%
GTGTCCATACAATATTGTTA+TGG - chr3_2:73150340-73150359 Msa0423350:CDS 30.0%
CCAGAGAAAATTATGGAAAA+GGG - chr3_2:73150385-73150404 Msa0423350:CDS 30.0%
CATGTGCATATAGTTATTGT+AGG - chr3_2:73150563-73150582 Msa0423350:intron 30.0%
AGTTATTGTAGGAAGTAGAT+AGG - chr3_2:73150574-73150593 Msa0423350:intron 30.0%
GTTATTGTAGGAAGTAGATA+GGG - chr3_2:73150575-73150594 Msa0423350:intron 30.0%
AATACTAAGAAGAACTACGG+TGG + chr3_2:73148480-73148499 None:intergenic 35.0%
AGATCAATTTCAGCGATGAT+CGG + chr3_2:73148722-73148741 None:intergenic 35.0%
ATGATCCATGTGATTTACCT+GGG + chr3_2:73148769-73148788 None:intergenic 35.0%
AATGATCCATGTGATTTACC+TGG + chr3_2:73148770-73148789 None:intergenic 35.0%
TATGGCTTCTTATGGAGAAA+AGG - chr3_2:73148934-73148953 Msa0423350:three_prime_UTR 35.0%
CTTCTTATGGAGAAAAGGAA+TGG - chr3_2:73148939-73148958 Msa0423350:three_prime_UTR 35.0%
AAAGCTTTCTTGATTCCAAC+CGG + chr3_2:73149079-73149098 None:intergenic 35.0%
! TAAGCTGTTCTTTTTGCGAA+TGG + chr3_2:73149185-73149204 None:intergenic 35.0%
TTCGCAAAAAGAACAGCTTA+AGG - chr3_2:73149185-73149204 Msa0423350:three_prime_UTR 35.0%
TCGCAAAAAGAACAGCTTAA+GGG - chr3_2:73149186-73149205 Msa0423350:three_prime_UTR 35.0%
TGGTCCAAATTAAAAGACAG+GGG + chr3_2:73149306-73149325 None:intergenic 35.0%
GCTTCAACCAAATCATTGAT+TGG + chr3_2:73149326-73149345 None:intergenic 35.0%
!! TGATTTGGTTGAAGCAAATG+TGG - chr3_2:73149331-73149350 Msa0423350:CDS 35.0%
TATGTGTGATAACTACACCA+AGG - chr3_2:73149368-73149387 Msa0423350:CDS 35.0%
CAAGAGTTATCAACTAGTGA+AGG + chr3_2:73149396-73149415 None:intergenic 35.0%
TTGCCGTATTTACAACAAGA+AGG - chr3_2:73149737-73149756 Msa0423350:intron 35.0%
TGCCGTATTTACAACAAGAA+GGG - chr3_2:73149738-73149757 Msa0423350:intron 35.0%
! TGCCCTTCTTGTTGTAAATA+CGG + chr3_2:73149743-73149762 None:intergenic 35.0%
!! AACATTCTGAAATCGAAGAC+AGG - chr3_2:73149796-73149815 Msa0423350:intron 35.0%
AAAGACAAAGTACATTGGTC+AGG - chr3_2:73150140-73150159 Msa0423350:intron 35.0%
TAAGATTGACAGAATCATGG+TGG + chr3_2:73150232-73150251 None:intergenic 35.0%
CCATAAGATTGACAGAATCA+TGG + chr3_2:73150235-73150254 None:intergenic 35.0%
CCATGATTCTGTCAATCTTA+TGG - chr3_2:73150232-73150251 Msa0423350:CDS 35.0%
TGATACCGTGTATGTATGTT+TGG + chr3_2:73150263-73150282 None:intergenic 35.0%
! TTCCATAATTTTCTCTGGCT+TGG + chr3_2:73150383-73150402 None:intergenic 35.0%
GCCAGAGAAAATTATGGAAA+AGG - chr3_2:73150384-73150403 Msa0423350:CDS 35.0%
! CCCTTTTCCATAATTTTCTC+TGG + chr3_2:73150388-73150407 None:intergenic 35.0%
! AGAGATATTGTGCACTGTTT+TGG - chr3_2:73150483-73150502 Msa0423350:intron 35.0%
CGGTTCATCCACATTATATA+GGG + chr3_2:73150514-73150533 None:intergenic 35.0%
CCTATATAATGTGGATGAAC+CGG - chr3_2:73150512-73150531 Msa0423350:intron 35.0%
! TGCATATTTTACCTGTCTCT+AGG - chr3_2:73150535-73150554 Msa0423350:intron 35.0%
AATTTCAGCGATGATCGGAA+CGG + chr3_2:73148717-73148736 None:intergenic 40.0%
! TCTTGATTCCAACCGGTTTA+GGG + chr3_2:73149072-73149091 None:intergenic 40.0%
! TTCTTGATTCCAACCGGTTT+AGG + chr3_2:73149073-73149092 None:intergenic 40.0%
GGTTGGAATCAAGAAAGCTT+TGG - chr3_2:73149078-73149097 Msa0423350:three_prime_UTR 40.0%
!!! GAAAGCTTTGGTGTTTTACG+CGG - chr3_2:73149090-73149109 Msa0423350:three_prime_UTR 40.0%
!!! AAAGCTTTGGTGTTTTACGC+GGG - chr3_2:73149091-73149110 Msa0423350:three_prime_UTR 40.0%
ATACTCGTGCATGATCCAAT+TGG + chr3_2:73149140-73149159 None:intergenic 40.0%
!! AAAACTACCATTTTGGCCCT+TGG - chr3_2:73149278-73149297 Msa0423350:CDS 40.0%
!! AAACTACCATTTTGGCCCTT+GGG - chr3_2:73149279-73149298 Msa0423350:CDS 40.0%
ATCAACTAGTGAAGGTTCCT+TGG + chr3_2:73149388-73149407 None:intergenic 40.0%
!! TGTTCTGTTTTTCGGTTGCT+TGG + chr3_2:73149780-73149799 None:intergenic 40.0%
TGAGCCTAAGTGGAATGAAT+GGG - chr3_2:73149995-73150014 Msa0423350:intron 40.0%
TTCTCCCATTCATTCCACTT+AGG + chr3_2:73150002-73150021 None:intergenic 40.0%
GTGGCATCCACGTAATTATA+AGG + chr3_2:73150038-73150057 None:intergenic 40.0%
TTACTGTCAATCCAACATGC+CGG - chr3_2:73150203-73150222 Msa0423350:CDS 40.0%
TATCACACAGATGCATTGCA+CGG - chr3_2:73150278-73150297 Msa0423350:CDS 40.0%
!!! ATTTTCTCTGGCTTGGACTT+GGG + chr3_2:73150376-73150395 None:intergenic 40.0%
!!! AATTTTCTCTGGCTTGGACT+TGG + chr3_2:73150377-73150396 None:intergenic 40.0%
GTCCAAGCCAGAGAAAATTA+TGG - chr3_2:73150378-73150397 Msa0423350:CDS 40.0%
TGGTACGTCCCTATATAATG+TGG - chr3_2:73150503-73150522 Msa0423350:intron 40.0%
CCGGTTCATCCACATTATAT+AGG + chr3_2:73150515-73150534 None:intergenic 40.0%
GAGACAGGTAAAATATGCAC+CGG + chr3_2:73150534-73150553 None:intergenic 40.0%
ACTAAGAAGAACTACGGTGG+CGG + chr3_2:73148477-73148496 None:intergenic 45.0%
ATCCGAGCTTCAATTACCAC+CGG - chr3_2:73148616-73148635 Msa0423350:three_prime_UTR 45.0%
ATCCATGTGATTTACCTGGG+AGG + chr3_2:73148766-73148785 None:intergenic 45.0%
TTTGGGTACTTTCTGTCTCG+TGG + chr3_2:73148977-73148996 None:intergenic 45.0%
!! CGAGACAGAAAGTACCCAAA+CGG - chr3_2:73148977-73148996 Msa0423350:three_prime_UTR 45.0%
!! GAAAGTACCCAAACGGTTCA+AGG - chr3_2:73148984-73149003 Msa0423350:three_prime_UTR 45.0%
TCTGGATATTGGAAGGCAAC+CGG - chr3_2:73149025-73149044 Msa0423350:three_prime_UTR 45.0%
ACCAATAGGTCACCCTAAAC+CGG - chr3_2:73149057-73149076 Msa0423350:three_prime_UTR 45.0%
! GATCATGCACGAGTATCGTT+TGG - chr3_2:73149144-73149163 Msa0423350:three_prime_UTR 45.0%
TTAAAAGACAGGGGACCCAA+GGG + chr3_2:73149297-73149316 None:intergenic 45.0%
ATTAAAAGACAGGGGACCCA+AGG + chr3_2:73149298-73149317 None:intergenic 45.0%
!! GGGTCCCCTGTCTTTTAATT+TGG - chr3_2:73149299-73149318 Msa0423350:CDS 45.0%
TGAAATCGAAGACAGGAAGC+CGG - chr3_2:73149803-73149822 Msa0423350:intron 45.0%
CTAATTCCAGCCGTAGTTTG+CGG + chr3_2:73149870-73149889 None:intergenic 45.0%
GCAAACTACGGCTGGAATTA+GGG - chr3_2:73149869-73149888 Msa0423350:intron 45.0%
GTGAGCCTAAGTGGAATGAA+TGG - chr3_2:73149994-73150013 Msa0423350:intron 45.0%
GAAGCCAAAACCAGTGTTCA+GGG + chr3_2:73150060-73150079 None:intergenic 45.0%
TACTGTCAATCCAACATGCC+GGG - chr3_2:73150204-73150223 Msa0423350:CDS 45.0%
TTGTATGGACACACTTGCAC+AGG + chr3_2:73150332-73150351 None:intergenic 45.0%
GAAGCTGCAAATGCATGTGT+CGG - chr3_2:73150425-73150444 Msa0423350:CDS 45.0%
AAGCTGCAAATGCATGTGTC+GGG - chr3_2:73150426-73150445 Msa0423350:CDS 45.0%
CACATGCTAATCCTAGAGAC+AGG + chr3_2:73150549-73150568 None:intergenic 45.0%
!! AAATAAATAAATTCTATAAA+TGG + chr3_2:73149571-73149590 None:intergenic 5.0%
TCCGAGCTTCAATTACCACC+GGG - chr3_2:73148617-73148636 Msa0423350:three_prime_UTR 50.0%
! GTTGGATGGAATCTGAAGCC+CGG + chr3_2:73148638-73148657 None:intergenic 50.0%
GGGCTTCAGATTCCATCCAA+CGG - chr3_2:73148637-73148656 Msa0423350:three_prime_UTR 50.0%
CAGATTCCATCCAACGGATG+AGG - chr3_2:73148643-73148662 Msa0423350:three_prime_UTR 50.0%
GACCTCCCAGGTAAATCACA+TGG - chr3_2:73148761-73148780 Msa0423350:three_prime_UTR 50.0%
CTGGATATTGGAAGGCAACC+GGG - chr3_2:73149026-73149045 Msa0423350:three_prime_UTR 50.0%
TGGATATTGGAAGGCAACCG+GGG - chr3_2:73149027-73149046 Msa0423350:three_prime_UTR 50.0%
!! ACCTATTGGTTTATCCGCCC+CGG + chr3_2:73149047-73149066 None:intergenic 50.0%
! ACCGGTTTAGGGTGACCTAT+TGG + chr3_2:73149061-73149080 None:intergenic 50.0%
ATAGGTCACCCTAAACCGGT+TGG - chr3_2:73149061-73149080 Msa0423350:three_prime_UTR 50.0%
! TACGCGGGTAAAGCACCTAA+AGG - chr3_2:73149106-73149125 Msa0423350:three_prime_UTR 50.0%
CGCAAACTACGGCTGGAATT+AGG - chr3_2:73149868-73149887 Msa0423350:intron 50.0%
ATCACCGGAGTTTGCAAGTG+AGG - chr3_2:73149965-73149984 Msa0423350:intron 50.0%
TGCACCTCACTTGCAAACTC+CGG + chr3_2:73149972-73149991 None:intergenic 50.0%
GGAAGCCAAAACCAGTGTTC+AGG + chr3_2:73150061-73150080 None:intergenic 50.0%
AGCTGCAAATGCATGTGTCG+GGG - chr3_2:73150427-73150446 Msa0423350:CDS 50.0%
GCCCGGTGGTAATTGAAGCT+CGG + chr3_2:73148621-73148640 None:intergenic 55.0%
ATCACGAGCTCCTCATCCGT+TGG + chr3_2:73148656-73148675 None:intergenic 55.0%
TAGGCTGCGACGTGCATTTG+CGG + chr3_2:73148691-73148710 None:intergenic 55.0%
TATGATCCTTGGGACCTCCC+AGG - chr3_2:73148749-73148768 Msa0423350:three_prime_UTR 55.0%
GATTTACCTGGGAGGTCCCA+AGG + chr3_2:73148758-73148777 None:intergenic 55.0%
GGTTCGGCCTTGAACCGTTT+GGG + chr3_2:73148994-73149013 None:intergenic 55.0%
CAAACGGTTCAAGGCCGAAC+CGG - chr3_2:73148993-73149012 Msa0423350:three_prime_UTR 55.0%
AAACGGTTCAAGGCCGAACC+GGG - chr3_2:73148994-73149013 Msa0423350:three_prime_UTR 55.0%
GGCTGGGTCTGGATATTGGA+AGG - chr3_2:73149018-73149037 Msa0423350:three_prime_UTR 55.0%
ATATTGGAAGGCAACCGGGG+CGG - chr3_2:73149030-73149049 Msa0423350:three_prime_UTR 55.0%
ACCGGGGCGGATAAACCAAT+AGG - chr3_2:73149043-73149062 Msa0423350:three_prime_UTR 55.0%
ACATCCTCCGCCGCAAACTA+CGG - chr3_2:73149857-73149876 Msa0423350:intron 55.0%
! ATTCCAGCCGTAGTTTGCGG+CGG + chr3_2:73149867-73149886 None:intergenic 55.0%
CTCGAATCGGTGTGCAGCTT+AGG + chr3_2:73149927-73149946 None:intergenic 55.0%
!! GCACACCGATTCGAGCTGTT+CGG - chr3_2:73149932-73149951 Msa0423350:intron 55.0%
GTGCTCCGAACAGCTCGAAT+CGG + chr3_2:73149940-73149959 None:intergenic 55.0%
TTCGGAGCACGTGGTATCAC+CGG - chr3_2:73149950-73149969 Msa0423350:intron 55.0%
AGGTGCAGAGTGAGCCTAAG+TGG - chr3_2:73149985-73150004 Msa0423350:intron 55.0%
!!! GCCACCCTGAACACTGGTTT+TGG - chr3_2:73150053-73150072 Msa0423350:intron 55.0%
GCCAAAACCAGTGTTCAGGG+TGG + chr3_2:73150057-73150076 None:intergenic 55.0%
GACAGAATCATGGTGGCACC+CGG + chr3_2:73150225-73150244 None:intergenic 55.0%
! GGATGGAATCTGAAGCCCGG+TGG + chr3_2:73148635-73148654 None:intergenic 60.0%
CGAGCTCCTCATCCGTTGGA+TGG + chr3_2:73148652-73148671 None:intergenic 60.0%
GCGATGATCGGAACGGCGAT+AGG + chr3_2:73148710-73148729 None:intergenic 60.0%
! CGGTTCGGCCTTGAACCGTT+TGG + chr3_2:73148995-73149014 None:intergenic 60.0%
AATATCCAGACCCAGCCGCC+CGG + chr3_2:73149015-73149034 None:intergenic 60.0%
AGGGGACCCAAGGGCCAAAA+TGG + chr3_2:73149288-73149307 None:intergenic 60.0%
AAGCCGGAGATCGTGACACG+TGG - chr3_2:73149819-73149838 Msa0423350:intron 60.0%
CCTCCACGTGTCACGATCTC+CGG + chr3_2:73149825-73149844 None:intergenic 60.0%
GAGATCGTGACACGTGGAGG+TGG - chr3_2:73149825-73149844 Msa0423350:intron 60.0%
! GTAGTTTGCGGCGGAGGATG+TGG + chr3_2:73149858-73149877 None:intergenic 60.0%
TTCGAGCTGTTCGGAGCACG+TGG - chr3_2:73149941-73149960 Msa0423350:intron 60.0%
GTGGATGCCACCCTGAACAC+TGG - chr3_2:73150047-73150066 Msa0423350:intron 60.0%
GGGCGGCTGGGTCTGGATAT+TGG - chr3_2:73149014-73149033 Msa0423350:three_prime_UTR 65.0%
CCGGAGATCGTGACACGTGG+AGG - chr3_2:73149822-73149841 Msa0423350:intron 65.0%
GTTTGCGGCGGAGGATGTGG+CGG + chr3_2:73149855-73149874 None:intergenic 65.0%
CATGGTGGCACCCGGCATGT+TGG + chr3_2:73150217-73150236 None:intergenic 65.0%
CGGTTCAAGGCCGAACCGGG+CGG - chr3_2:73148997-73149016 Msa0423350:three_prime_UTR 70.0%
! CCAGCCGTAGTTTGCGGCGG+AGG + chr3_2:73149864-73149883 None:intergenic 70.0%
CCTCCGCCGCAAACTACGGC+TGG - chr3_2:73149861-73149880 Msa0423350:intron 70.0%
TCAAGGCCGAACCGGGCGGC+TGG - chr3_2:73149001-73149020 Msa0423350:three_prime_UTR 75.0%
CAAGGCCGAACCGGGCGGCT+GGG - chr3_2:73149002-73149021 Msa0423350:three_prime_UTR 75.0%
CCAGACCCAGCCGCCCGGTT+CGG + chr3_2:73149010-73149029 None:intergenic 75.0%
! CCGAACCGGGCGGCTGGGTC+TGG - chr3_2:73149007-73149026 Msa0423350:three_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 73148469 73150941 73148469 ID=Msa0423350;Name=Msa0423350
chr3_2 mRNA 73148469 73150941 73148469 ID=Msa0423350-mRNA-1;Parent=Msa0423350;Name=Msa0423350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=142|1|1|1|1|1|3|808|282
chr3_2 exon 73148469 73149690 73148469 ID=Msa0423350-mRNA-1:exon:18192;Parent=Msa0423350-mRNA-1
chr3_2 exon 73150203 73150477 73150203 ID=Msa0423350-mRNA-1:exon:18191;Parent=Msa0423350-mRNA-1
chr3_2 exon 73150640 73150941 73150640 ID=Msa0423350-mRNA-1:exon:18190;Parent=Msa0423350-mRNA-1
chr3_2 five_prime_UTR 73150800 73150941 73150800 ID=Msa0423350-mRNA-1:five_prime_utr;Parent=Msa0423350-mRNA-1
chr3_2 CDS 73150640 73150799 73150640 ID=Msa0423350-mRNA-1:cds;Parent=Msa0423350-mRNA-1
chr3_2 CDS 73150203 73150477 73150203 ID=Msa0423350-mRNA-1:cds;Parent=Msa0423350-mRNA-1
chr3_2 CDS 73149277 73149690 73149277 ID=Msa0423350-mRNA-1:cds;Parent=Msa0423350-mRNA-1
chr3_2 three_prime_UTR 73148469 73149276 73148469 ID=Msa0423350-mRNA-1:three_prime_utr;Parent=Msa0423350-mRNA-1
Gene Sequence

>Msa0423350

ATGGCATCCGAGCTTCAATTACCACCGGGCTTCAGATTCCATCCAACGGATGAGGAGCTCGTGATGCACTATCTCTGCCGCAAATGCACGTCGCAGCCTATCGCCGTTCCGATCATCGCTGAAATTGATCTATATAAATATGATCCTTGGGACCTCCCAGGTATGGCTTCTTATGGAGAAAAGGAATGGTACTTTTTCTCGCCACGAGACAGAAAGTACCCAAACGGTTCAAGGCCGAACCGGGCGGCTGGGTCTGGATATTGGAAGGCAACCGGGGCGGATAAACCAATAGGTCACCCTAAACCGGTTGGAATCAAGAAAGCTTTGGTGTTTTACGCGGGTAAAGCACCTAAAGGTGATAAAACCAATTGGATCATGCACGAGTATCGTTTGGCTGATGTAGATCGCACCATTCGCAAAAAGAACAGCTTAAGGTTGGATGATTGGGTGCTTTGCCGTATTTACAACAAGAAGGGCACAATTGAGAAACAACCAAGCAACCGAAAAACAGAACATTCTGAAATCGAAGACAGGAAGCCGGAGATCGTGACACGTGGAGGTGGTCTTCCGCCACATCCTCCGCCGCAAACTACGGCTGGAATTAGGGATTACATGTACTTTGACACATCAGATTCGATTCCTAAGCTGCACACCGATTCGAGCTGTTCGGAGCACGTGGTATCACCGGAGTTTGCAAGTGAGGTGCAGAGTGAGCCTAAGTGGAATGAATGGGAGAAGAACCTTGAATTTCCTTATAATTACGTGGATGCCACCCTGAACACTGGTTTTGGCTTCCAAAATACTAATCCATTGCAAGATATGTTCATGTACTTGCCCAAAACCTTTTGA
Protein sequence

>Msa0423350

MASELQLPPGFRFHPTDEELVMHYLCRKCTSQPIAVPIIAEIDLYKYDPWDLPGMASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRTIRKKNSLRLDDWVLCRIYNKKGTIEKQPSNRKTEHSEIEDRKPEIVTRGGGLPPHPPPQTTAGIRDYMYFDTSDSIPKLHTDSSCSEHVVSPEFASEVQSEPKWNEWEKNLEFPYNYVDATLNTGFGFQNTNPLQDMFMYLPKTF*