AlfalfaGEDB | Msa0469750

M. sativa cultivar zhongmu-4 / Msa0469750

KEGG: -
GO: GO:0000003 GO:0002831 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007275 GO:0008150 GO:0009266 GO:0009409 GO:0009611 GO:0009628 GO:0009787 GO:0009788 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009968 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0023051 GO:0023057 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032101 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0043900 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0047484 GO:0048316 GO:0048364 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048584 GO:0048585 GO:0048608 GO:0048731 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080134 GO:0097159 GO:0099402 GO:0140110 GO:1900055 GO:1900057 GO:1900150 GO:1901000 GO:1901002 GO:1901363 GO:1901419 GO:1901420 GO:1902584 GO:1902680 GO:1903506 GO:1903508 GO:1905623 GO:1905957 GO:1905958 GO:2000024 GO:2000026 GO:2000070 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469750	QJI07920.1	99.306	288	0	1	1	286	1	288	0.0	595

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469750	sp\|Q39013\|NAC2_ARATH	69.900	299	67	7	1	286	1	289	5.13e-144	409

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469750	A0A6M3YBE3	99.306	288	0	1	1	286	1	288	0.0	595

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TFs/TRs:

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Gene ID	Type	Classification
Msa0469750	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0374260	Msa0469750	0.824412	8.188014e-54	-8.615850e-47
Msa0423350	Msa0469750	0.907459	4.954397e-81	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469750	MtrunA17_Chr3g0124761	96.875	288	7	1	1	286	1	288	0.0	584
Msa0469750	MtrunA17_Chr8g0384721	62.000	300	83	6	1	284	1	285	3.44e-119	343
Msa0469750	MtrunA17_Chr3g0130731	59.283	307	89	6	1	286	1	292	8.77e-113	327
Msa0469750	MtrunA17_Chr2g0318101	62.189	201	52	5	6	195	14	201	7.11e-81	248
Msa0469750	MtrunA17_Chr8g0359921	70.552	163	46	2	3	164	10	171	4.11e-78	240
Msa0469750	MtrunA17_Chr7g0252971	62.032	187	59	3	4	178	5	191	7.26e-78	239
Msa0469750	MtrunA17_Chr2g0318081	65.116	172	56	2	3	173	12	180	9.18e-77	237
Msa0469750	MtrunA17_Chr4g0047841	66.480	179	35	3	6	160	14	191	8.16e-76	234
Msa0469750	MtrunA17_Chr5g0417791	62.424	165	60	2	5	167	1	165	1.43e-72	223
Msa0469750	MtrunA17_Chr2g0326361	61.538	169	61	2	3	167	10	178	3.22e-72	224

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0469750	AT1G01720.1	69.900	299	67	7	1	286	1	289	5.22e-145	409
Msa0469750	AT1G77450.1	62.030	266	53	5	2	264	5	225	3.57e-109	317
Msa0469750	AT5G08790.1	64.751	261	55	7	1	253	1	232	2.43e-107	313
Msa0469750	AT5G63790.1	55.290	293	78	6	1	286	44	290	1.95e-101	299
Msa0469750	AT5G63790.2	55.290	293	78	6	1	286	54	300	2.85e-101	299
Msa0469750	AT1G52890.1	64.773	176	58	2	3	177	10	182	1.09e-77	239
Msa0469750	AT3G04070.2	61.307	199	63	5	7	194	10	205	7.62e-77	238
Msa0469750	AT3G15500.1	67.470	166	50	2	3	167	10	172	9.67e-77	236
Msa0469750	AT1G61110.1	69.880	166	39	2	6	160	15	180	1.28e-76	236
Msa0469750	AT3G04070.1	57.477	214	63	5	7	194	10	221	1.92e-76	237

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Find 142 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGGTTCAAGGCCGAACC+GGG	0.545704	3_3:-71726420	Msa0469750:CDS
AAAGACAAAGTACATTGGTC+AGG	0.500105	3_3:-71724421	Msa0469750:three_prime_UTR
AAAGCTTTCTTGATTCCAAC+CGG	0.462419	3_3:+71726338	None:intergenic
AACATTCTGAAATCGAAGAC+AGG	0.566257	3_3:-71724765	Msa0469750:CDS
AAGAATACTAAGAAGAACTA+CGG	0.587660	3_3:+71726934	None:intergenic
AAGCCGGAGATCGTGACACG+TGG	0.637296	3_3:-71724742	Msa0469750:CDS
AAGCTGCAAATGCATGTGTC+GGG	0.491202	3_3:-71724135	Msa0469750:three_prime_UTR
AATACTAAGAAGAACTACGG+TGG	0.747559	3_3:+71726937	None:intergenic
AATATCCAGACCCAGCCGCC+CGG	0.582754	3_3:+71726402	None:intergenic
AATTTCAGCGATGATCGGAA+CGG	0.679262	3_3:+71726700	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTTATAGGTATGGCTTCTTA+TGG	-	chr3_3:71724096-71724115	Msa0469750:three_prime_UTR	30.0%
CTAAAGGTGATAAAACCAAT+TGG	-	chr3_3:71724292-71724311	Msa0469750:three_prime_UTR	30.0%
TTGGTCCAAATTAAAAGACA+GGG	+	chr3_3:71724477-71724496	None:intergenic	30.0%
ATTGGTCCAAATTAAAAGAC+AGG	+	chr3_3:71724478-71724497	None:intergenic	30.0%
ATTTGGACCAATCAATGATT+TGG	-	chr3_3:71724486-71724505	Msa0469750:CDS	30.0%
CTCTTGATTGATATACTTTG+TGG	-	chr3_3:71724580-71724599	Msa0469750:CDS	30.0%
TCGTTAATGGTGGTTTAATT+AGG	-	chr3_3:71725199-71725218	Msa0469750:intron	30.0%
TGGTGGTTTAATTAGGAAAA+TGG	-	chr3_3:71725206-71725225	Msa0469750:intron	30.0%
TAACCACTCTATCTTTGATT+GGG	+	chr3_3:71725403-71725422	None:intergenic	30.0%
ATAACCACTCTATCTTTGAT+TGG	+	chr3_3:71725404-71725423	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	71723639	71726967	71723639	ID=Msa0469750;Name=Msa0469750
chr3_3	mRNA	71723639	71726967	71723639	ID=Msa0469750-mRNA-1;Parent=Msa0469750;Name=Msa0469750-mRNA-1;_AED=0.05;_eAED=0.05;_QI=142\|1\|1\|1\|1\|1\|3\|811\|286
chr3_3	exon	71723639	71724875	71723639	ID=Msa0469750-mRNA-1:exon:17683;Parent=Msa0469750-mRNA-1
chr3_3	exon	71726229	71726503	71726229	ID=Msa0469750-mRNA-1:exon:17682;Parent=Msa0469750-mRNA-1
chr3_3	exon	71726666	71726967	71726666	ID=Msa0469750-mRNA-1:exon:17681;Parent=Msa0469750-mRNA-1
chr3_3	five_prime_UTR	71726826	71726967	71726826	ID=Msa0469750-mRNA-1:five_prime_utr;Parent=Msa0469750-mRNA-1
chr3_3	CDS	71726666	71726825	71726666	ID=Msa0469750-mRNA-1:cds;Parent=Msa0469750-mRNA-1
chr3_3	CDS	71726229	71726503	71726229	ID=Msa0469750-mRNA-1:cds;Parent=Msa0469750-mRNA-1
chr3_3	CDS	71724450	71724875	71724450	ID=Msa0469750-mRNA-1:cds;Parent=Msa0469750-mRNA-1
chr3_3	three_prime_UTR	71723639	71724449	71723639	ID=Msa0469750-mRNA-1:three_prime_utr;Parent=Msa0469750-mRNA-1

Gene Sequence

>Msa0469750

ATGGCATCCGAGCTTCAATTACCACCGGGCTTCAGATTCCATCCAACGGATGAGGAGCTCGTGATGCACTATCTCTGCCGCAAATGCACGTCGCAGCCTATCGCCGTTCCGATCATCGCTGAAATTGATCTATATAAATATGATCCTTGGGACCTCCCAGGTATGGCTTCTTATGGAGAAAAGGAATGGTACTTTTTCTCGCCACGAGACAGAAAGTACCCAAACGGTTCAAGGCCGAACCGGGCGGCTGGGTCTGGATATTGGAAGGCAACCGGGGCGGATAAACCAATAGGTCACCCTAAACCGGTTGGAATCAAGAAAGCTTTGGTGTTTTACGCGGGTAAAGCACCTAAAGGTGATAAAACCAATTGGATCATGCACGAGTATCGTTTGGCTGATGTAGATCGCACCATTCGCAAAAAGAACAGCTTAAGGTTGGATGATTGGGTGCTTTGCCGTATTTACAACAAGAAGGGCACAATTGAGAAACAACCAAGCAACGGTGGTGTTAACCGAAAAACAGAACATTCTGAAATCGAAGACAGGAAGCCGGAGATCGTGACACGTGGAGGTGGTCTTCCGCCACATCCTCCGCCGCAAACTACGGCTGGAATTAGGGATTACATGTACTTTGACACATCAGATTCGATTCCTAAGCTGCACACCGATTCGAGCTGTTCGGAGCACGTGGTATCACCGGAGTTTGCAAGTGAGGTGCAGAGTGAGCCTAAGTGGAATGAATGGGAGAAGAACCTTGAATTTCCTTATAATTACGTGGATGCCACCCTGAACACTGGTTTTGGCTTCCAAAATACTAATCCATTGCAAGATATGTTCATGTACTTGCCCAAAACCTTTTGA

Protein sequence

>Msa0469750

MASELQLPPGFRFHPTDEELVMHYLCRKCTSQPIAVPIIAEIDLYKYDPWDLPGMASYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADKPIGHPKPVGIKKALVFYAGKAPKGDKTNWIMHEYRLADVDRTIRKKNSLRLDDWVLCRIYNKKGTIEKQPSNGGVNRKTEHSEIEDRKPEIVTRGGGLPPHPPPQTTAGIRDYMYFDTSDSIPKLHTDSSCSEHVVSPEFASEVQSEPKWNEWEKNLEFPYNYVDATLNTGFGFQNTNPLQDMFMYLPKTF*