AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0436200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436200 MtrunA17_Chr3g0138531 98.377 308 4 1 1 308 1 307 0.0 595
Msa0436200 MtrunA17_Chr3g0138541 87.107 318 29 3 1 308 1 316 2.57e-99 295
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0436200 AT2G25670.2 60.615 325 104 9 1 308 1 318 1.15e-43 152
Msa0436200 AT2G25670.1 60.615 325 104 9 1 308 1 318 1.15e-43 152
Msa0436200 AT4G32610.1 55.385 325 118 11 1 308 1 315 1.81e-33 125

Find 103 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTTCTTCTTGGCATTCT+TGG 0.196635 3_2:-89549091 None:intergenic
AATCGGAATCGCAGGCGTTT+TGG 0.237603 3_2:+89547376 Msa0436200:CDS
CGATTCCGATTTGGTTGATT+TGG 0.262411 3_2:-89547358 None:intergenic
TTCTTCTTGACCTCAGGTTC+AGG 0.291395 3_2:-89548512 None:intergenic
CAAGGACAAGAAGAATAATA+AGG 0.295710 3_2:+89547329 Msa0436200:CDS
GAGATTGAGATCTGGGATTG+GGG 0.318478 3_2:-89546991 None:intergenic
TATGGCGGATTAATTAGTTT+TGG 0.335384 3_2:+89549627 Msa0436200:three_prime_UTR
AGCAGCGTCCATTTCTTTAC+TGG 0.341268 3_2:-89549256 None:intergenic
GGAGATTGAGATCTGGGATT+GGG 0.342740 3_2:-89546992 None:intergenic
GCTAAAGCCAACTGTTTATT+CGG 0.361954 3_2:-89549439 None:intergenic
AAACAGTTGGCTTTAGCTCT+TGG 0.363128 3_2:+89549445 Msa0436200:three_prime_UTR
CTGCGATTCCGATTCCGATT+TGG 0.363251 3_2:-89547367 None:intergenic
AAGAGTGAGAGGCGGAGAAT+GGG 0.365234 3_2:-89546931 None:intergenic
GTGCTGTGTTGCTACTTATA+TGG 0.365344 3_2:+89549678 Msa0436200:three_prime_UTR
TTTGTGTACTGGGGTTGTTT+TGG 0.368329 3_2:+89549601 Msa0436200:three_prime_UTR
CAGGATAAGAAAGGTGTAGA+TGG 0.373922 3_2:+89549030 Msa0436200:CDS
AAAGAGTGAGAGGCGGAGAA+TGG 0.386166 3_2:-89546932 None:intergenic
TCGGCCTCCTTTGGTGCAGC+TGG 0.386362 3_2:-89548545 None:intergenic
AGTTGACGTTCGGCCTCCTT+TGG 0.387948 3_2:-89548554 None:intergenic
CGAACGTCAACTCTCCAAAA+AGG 0.392328 3_2:+89548565 Msa0436200:CDS
ATGCTCGGGTTTGTCCTCAC+TGG 0.394418 3_2:-89547499 None:intergenic
GGTTTGTCCTCACTGGGTTG+AGG 0.405114 3_2:-89547492 None:intergenic
TTATATAAATAAATAAATAA+AGG 0.412888 3_2:-89547013 None:intergenic
TGAAGGTGACGAGGAGGTAG+AGG 0.413213 3_2:+89548448 Msa0436200:CDS
AATAAAGGAGATTGAGATCT+GGG 0.416008 3_2:-89546998 None:intergenic
GTTTGTCCTCACTGGGTTGA+GGG 0.417417 3_2:-89547491 None:intergenic
TGTTCTCTTCCCAGCTAGCT+AGG 0.423496 3_2:-89546875 None:intergenic
TGCTAGAGCTGCTGCTCAAG+AGG 0.430832 3_2:+89549278 Msa0436200:CDS
GTGATATAACCCTAGCTAGC+TGG 0.431730 3_2:+89546865 Msa0436200:five_prime_UTR
TCAGCATTCTTCTTGACCTC+AGG 0.431890 3_2:-89548518 None:intergenic
TCAGGTTTCACAGTGTGCTC+TGG 0.433555 3_2:-89548494 None:intergenic
AAATACCTTGGGATTCATCT+TGG 0.436144 3_2:-89548673 None:intergenic
GCTCTCCTTTACATCAATAC+AGG 0.436244 3_2:+89549387 Msa0436200:three_prime_UTR
GCACAGGTTGTTGGTTGTAA+TGG 0.445016 3_2:-89549350 None:intergenic
AGATTGAGATCTGGGATTGG+GGG 0.451081 3_2:-89546990 None:intergenic
ATTGAGATCTGGGATTGGGG+GGG 0.457421 3_2:-89546988 None:intergenic
AAATAAAGGAGATTGAGATC+TGG 0.459992 3_2:-89546999 None:intergenic
TGCTCGGGTTTGTCCTCACT+GGG 0.461528 3_2:-89547498 None:intergenic
CAAATCAACCAAATCGGAAT+CGG 0.464697 3_2:+89547359 Msa0436200:CDS
TGTATTTGCAGGTGCACCTC+AGG 0.467621 3_2:+89549011 Msa0436200:intron
GTTAGACTCTTTCACCTCCT+TGG 0.471040 3_2:-89549130 None:intergenic
TTGAATCGCGTTGTTAAGAA+TGG 0.471740 3_2:+89547209 Msa0436200:exon
TTCTTCCAAATCAACCAAAT+CGG 0.473799 3_2:+89547353 Msa0436200:CDS
GGTGTAGATGGGGATGTAGA+TGG 0.477288 3_2:+89549042 Msa0436200:CDS
AGGAGATTGAGATCTGGGAT+TGG 0.478847 3_2:-89546993 None:intergenic
GATTGAGATCTGGGATTGGG+GGG 0.487047 3_2:-89546989 None:intergenic
GTTCTTCTCTTTCTTCTTAG+CGG 0.490710 3_2:-89549328 None:intergenic
AGACAATATCTCAAGTCCAT+TGG 0.492455 3_2:-89549488 None:intergenic
TTAAGAAAGTTGCTTCTATG+AGG 0.492845 3_2:+89549223 Msa0436200:CDS
AAATTCCTGTATTGATGTAA+AGG 0.499279 3_2:-89549392 None:intergenic
AAGGACAAGAAGAATAATAA+GGG 0.503226 3_2:+89547330 Msa0436200:CDS
GTTCTCTTCCCAGCTAGCTA+GGG 0.507395 3_2:-89546874 None:intergenic
CACCGTTGAATGCAACCTCA+TGG 0.509050 3_2:+89547406 Msa0436200:CDS
GGGAAATCGAGATTAGGGTT+TGG 0.509305 3_2:-89546968 None:intergenic
CTGCTCAAGAGGCTGCTGCA+AGG 0.511826 3_2:+89549289 Msa0436200:CDS
TGATATAACCCTAGCTAGCT+GGG 0.512292 3_2:+89546866 Msa0436200:five_prime_UTR
AGGCGGAGAATGGGATATAG+AGG 0.521569 3_2:-89546922 None:intergenic
TGAACAAACCTCAAAATGCT+CGG 0.523575 3_2:-89547514 None:intergenic
GAGGTTGCATTCAACGGTGC+CGG 0.524888 3_2:-89547402 None:intergenic
TGGTGGAAGCAGAAGAGATG+AGG 0.527011 3_2:+89547236 Msa0436200:CDS
AAAGAAGGATAAAGCTTCCA+AGG 0.528000 3_2:+89549113 Msa0436200:CDS
GTCCTCACTGGGTTGAGGGT+CGG 0.528008 3_2:-89547487 None:intergenic
AGGATAAGAAAGGTGTAGAT+GGG 0.528793 3_2:+89549031 Msa0436200:CDS
CAAATCGGAATCGGAATCGC+AGG 0.529120 3_2:+89547368 Msa0436200:CDS
GCCCATGAGGTTGCATTCAA+CGG 0.535338 3_2:-89547408 None:intergenic
TATTACTAGTCGTATTCCAA+TGG 0.542649 3_2:+89549472 Msa0436200:three_prime_UTR
GAACAAACCTCAAAATGCTC+GGG 0.543027 3_2:-89547513 None:intergenic
AGGCTGCTGCAAGGAACGCA+AGG 0.544412 3_2:+89549298 Msa0436200:CDS
TGCAACCTCATGGGCTGATG+TGG 0.545900 3_2:+89547416 Msa0436200:CDS
ACACAGAATGAAAGCAATGA+TGG 0.546801 3_2:+89548644 Msa0436200:CDS
GAAGGAACTTGAAGAGCTTG+AGG 0.550464 3_2:+89548598 Msa0436200:CDS
ACCGTTGAATGCAACCTCAT+GGG 0.552821 3_2:+89547407 Msa0436200:CDS
CAGAAGAGATGAGGGTTCGT+TGG 0.554071 3_2:+89547245 Msa0436200:CDS
GGAAAATTGAGGCGGTGCGG+TGG 0.568741 3_2:-89547466 None:intergenic
TTGTTAAGAATGGTTGGTGG+TGG 0.570771 3_2:+89547219 Msa0436200:exon
TCTACACCTTTCTTATCCTG+AGG 0.571217 3_2:-89549027 None:intergenic
TGAAGTTCCAGCTGCACCAA+AGG 0.576041 3_2:+89548538 Msa0436200:CDS
GGTTGAGGGTCGGAAAATTG+AGG 0.576339 3_2:-89547477 None:intergenic
AAATGTAAGAAAAGAGTGAG+AGG 0.580119 3_2:-89546942 None:intergenic
TGTAAGAAAAGAGTGAGAGG+CGG 0.582582 3_2:-89546939 None:intergenic
TGATGTTGAAAATGCAGAGG+AGG 0.584727 3_2:+89549170 Msa0436200:CDS
ATCGCGTTGTTAAGAATGGT+TGG 0.586496 3_2:+89547213 Msa0436200:exon
CACTGTGAAACCTGAACCTG+AGG 0.592278 3_2:+89548502 Msa0436200:CDS
GGTGCACCTCAGGATAAGAA+AGG 0.599338 3_2:+89549021 Msa0436200:intron
AGTTCCAGCTGCACCAAAGG+AGG 0.599579 3_2:+89548541 Msa0436200:CDS
GATGATGCCGAATAAACAGT+TGG 0.602592 3_2:+89549432 Msa0436200:three_prime_UTR
GGATAAGAAAGGTGTAGATG+GGG 0.604616 3_2:+89549032 Msa0436200:CDS
TATTGATGTAAAGGAGAGCA+AGG 0.606781 3_2:-89549383 None:intergenic
AATGAAAGCAATGATGGTCA+AGG 0.616215 3_2:+89548650 Msa0436200:CDS
GGTGGAAGCAGAAGAGATGA+GGG 0.627510 3_2:+89547237 Msa0436200:CDS
TTTAGATGAAGGTGACGAGG+AGG 0.634428 3_2:+89548442 Msa0436200:CDS
GTCGGAAAATTGAGGCGGTG+CGG 0.637381 3_2:-89547469 None:intergenic
TTCTGATGTTGAAAATGCAG+AGG 0.645244 3_2:+89549167 Msa0436200:CDS
GTCATCCACATCAGCCCATG+AGG 0.661130 3_2:-89547421 None:intergenic
GAAGAAGAAGAAATCGGACA+AGG 0.668190 3_2:+89547311 Msa0436200:CDS
TTCCGACCCTCAACCCAGTG+AGG 0.672447 3_2:+89547485 Msa0436200:CDS
CAAGGCCAAGATGAATCCCA+AGG 0.675177 3_2:+89548668 Msa0436200:CDS
GCGTTGTTAAGAATGGTTGG+TGG 0.676274 3_2:+89547216 Msa0436200:exon
TCGGCATCATCATATGAACA+AGG 0.678182 3_2:-89549420 None:intergenic
AAGGAGGTGAAAGAGTCTAA+CGG 0.681195 3_2:+89549132 Msa0436200:CDS
ATTACAACCAACAACCTGTG+CGG 0.714310 3_2:+89549352 Msa0436200:CDS
TGAGGGTCGGAAAATTGAGG+CGG 0.719908 3_2:-89547474 None:intergenic
GAAGGATAAAGCTTCCAAGG+AGG 0.726948 3_2:+89549116 Msa0436200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATAAATAAATAAATAA+AGG - chr3_2:89547016-89547035 None:intergenic 0.0%
!! AAAAACAGTTAAAAATAAAT+TGG - chr3_2:89549730-89549749 None:intergenic 10.0%
!!! AATTTATTTTTAACTGTTTT+TGG + chr3_2:89549729-89549748 Msa0436200:three_prime_UTR 10.0%
!! ATGAAAAAAATTATAAATGC+TGG - chr3_2:89548912-89548931 None:intergenic 15.0%
!!! ATATTGTCTTAAAACTTTTT+TGG + chr3_2:89549502-89549521 Msa0436200:three_prime_UTR 15.0%
!!! TAAGTATTTGAAAAGCTTTT+CGG - chr3_2:89548009-89548028 None:intergenic 20.0%
!!! ACATTTTGAAGATTTATCTT+AGG - chr3_2:89548046-89548065 None:intergenic 20.0%
!! AGTTTATCATTACTATTCAA+AGG - chr3_2:89548258-89548277 None:intergenic 20.0%
!! TGAATAGTAATGATAAACTT+TGG + chr3_2:89548259-89548278 Msa0436200:intron 20.0%
!! AAATTGCAAAGTAAAAAATC+TGG - chr3_2:89548392-89548411 None:intergenic 20.0%
!!! TTTACTTTGCAATTTTTAAC+AGG + chr3_2:89548397-89548416 Msa0436200:intron 20.0%
!! TTACATTATTTGTAGGATTA+TGG + chr3_2:89548714-89548733 Msa0436200:intron 20.0%
! TTTGAAGAAGAAGAAGAAAT+CGG + chr3_2:89547305-89547324 Msa0436200:CDS 25.0%
! AAGGACAAGAAGAATAATAA+GGG + chr3_2:89547330-89547349 Msa0436200:CDS 25.0%
! ACAATAACAAAAAAACATCC+AGG - chr3_2:89547586-89547605 None:intergenic 25.0%
!!! ATGTCATTTTTCTGTTTGTT+TGG + chr3_2:89547640-89547659 Msa0436200:intron 25.0%
!! TTGATGACTATTGAGATTAA+GGG + chr3_2:89547735-89547754 Msa0436200:intron 25.0%
!! ATGAACACAAGTTGAAAATA+AGG + chr3_2:89547961-89547980 Msa0436200:intron 25.0%
!! ACAAGTTGAAAATAAGGTAT+AGG + chr3_2:89547967-89547986 Msa0436200:intron 25.0%
! TATCTTAGGATAAAACATGT+TGG - chr3_2:89548032-89548051 None:intergenic 25.0%
! ACACAATTATCAAAAAGATC+AGG - chr3_2:89548132-89548151 None:intergenic 25.0%
!! TTGATAATTGTGTTTCTTTG+AGG + chr3_2:89548139-89548158 Msa0436200:intron 25.0%
! TGTCTATGCGATAAATAAAT+AGG + chr3_2:89548171-89548190 Msa0436200:intron 25.0%
!!! AATAAATAGGTTTTGTCACA+TGG + chr3_2:89548184-89548203 Msa0436200:intron 25.0%
!!! ATAAATAGGTTTTGTCACAT+GGG + chr3_2:89548185-89548204 Msa0436200:intron 25.0%
!!! GAAGAAGATATTTTAGATGA+AGG + chr3_2:89548431-89548450 Msa0436200:CDS 25.0%
!!! TATGGTTTATTTTTGAGTTC+AGG + chr3_2:89548732-89548751 Msa0436200:intron 25.0%
! GAAAAAATCCAGTAAAGAAA+TGG + chr3_2:89549248-89549267 Msa0436200:CDS 25.0%
!! AAATTCCTGTATTGATGTAA+AGG - chr3_2:89549395-89549414 None:intergenic 25.0%
AAATGTAAGAAAAGAGTGAG+AGG - chr3_2:89546945-89546964 None:intergenic 30.0%
AATAAAGGAGATTGAGATCT+GGG - chr3_2:89547001-89547020 None:intergenic 30.0%
AAATAAAGGAGATTGAGATC+TGG - chr3_2:89547002-89547021 None:intergenic 30.0%
CAAGGACAAGAAGAATAATA+AGG + chr3_2:89547329-89547348 Msa0436200:CDS 30.0%
TTCTTCCAAATCAACCAAAT+CGG + chr3_2:89547353-89547372 Msa0436200:CDS 30.0%
!! TGTTGTTGTTTATTGATTCC+TGG + chr3_2:89547565-89547584 Msa0436200:intron 30.0%
!! GTTGATGACTATTGAGATTA+AGG + chr3_2:89547734-89547753 Msa0436200:intron 30.0%
TTTATGTGCTTACTTTGCTT+TGG + chr3_2:89548083-89548102 Msa0436200:intron 30.0%
! TTATCTGTGTTTTCTTTGTG+TGG + chr3_2:89548330-89548349 Msa0436200:intron 30.0%
CTCTGGATAATAAATACCTT+GGG - chr3_2:89548687-89548706 None:intergenic 30.0%
CTGCATCTTACATTATTTGT+AGG + chr3_2:89548707-89548726 Msa0436200:intron 30.0%
TCAGCGAAAAAAGATGAAAA+TGG - chr3_2:89548851-89548870 None:intergenic 30.0%
ATTCGCAAAATTGTATTTGC+AGG + chr3_2:89549000-89549019 Msa0436200:intron 30.0%
! ATCCTTCTTTTTCTTCTTCT+TGG - chr3_2:89549103-89549122 None:intergenic 30.0%
!!! TTTTCAACATCAGAAGTGTT+GGG - chr3_2:89549162-89549181 None:intergenic 30.0%
!! ATTTTCAACATCAGAAGTGT+TGG - chr3_2:89549163-89549182 None:intergenic 30.0%
TTAAGAAAGTTGCTTCTATG+AGG + chr3_2:89549223-89549242 Msa0436200:CDS 30.0%
TATTACTAGTCGTATTCCAA+TGG + chr3_2:89549472-89549491 Msa0436200:three_prime_UTR 30.0%
!!! ATGAACTACTTTTTGTGTAC+TGG + chr3_2:89549590-89549609 Msa0436200:three_prime_UTR 30.0%
!!! TGAACTACTTTTTGTGTACT+GGG + chr3_2:89549591-89549610 Msa0436200:three_prime_UTR 30.0%
!!! TATGGCGGATTAATTAGTTT+TGG + chr3_2:89549627-89549646 Msa0436200:three_prime_UTR 30.0%
TTGAATCGCGTTGTTAAGAA+TGG + chr3_2:89547209-89547228 Msa0436200:exon 35.0%
CAAATCAACCAAATCGGAAT+CGG + chr3_2:89547359-89547378 Msa0436200:CDS 35.0%
TGAACAAACCTCAAAATGCT+CGG - chr3_2:89547517-89547536 None:intergenic 35.0%
TCACTTTATGTGCTTAGCTA+AGG + chr3_2:89547614-89547633 Msa0436200:intron 35.0%
TGGTTATGCCTGTTCTTATT+AGG + chr3_2:89548103-89548122 Msa0436200:intron 35.0%
TCAGGTATCCTAATAAGAAC+AGG - chr3_2:89548114-89548133 None:intergenic 35.0%
TTGTGTGGTTATTGCTTGAA+TGG + chr3_2:89548345-89548364 Msa0436200:intron 35.0%
!! TATTTTAGATGAAGGTGACG+AGG + chr3_2:89548439-89548458 Msa0436200:CDS 35.0%
! CTTCTTCTTCCTTTCCTTTT+TGG - chr3_2:89548582-89548601 None:intergenic 35.0%
CAAAAAGGAAAGGAAGAAGA+AGG + chr3_2:89548580-89548599 Msa0436200:CDS 35.0%
ACACAGAATGAAAGCAATGA+TGG + chr3_2:89548644-89548663 Msa0436200:CDS 35.0%
AATGAAAGCAATGATGGTCA+AGG + chr3_2:89548650-89548669 Msa0436200:CDS 35.0%
AAATACCTTGGGATTCATCT+TGG - chr3_2:89548676-89548695 None:intergenic 35.0%
! GCTCTGGATAATAAATACCT+TGG - chr3_2:89548688-89548707 None:intergenic 35.0%
AATAATGTAAGATGCAGCTC+TGG - chr3_2:89548704-89548723 None:intergenic 35.0%
!!! TTTCATCTTTTTTCGCTGAC+AGG + chr3_2:89548852-89548871 Msa0436200:intron 35.0%
! AGGATAAGAAAGGTGTAGAT+GGG + chr3_2:89549031-89549050 Msa0436200:CDS 35.0%
TTTCTTCTTCTTGGCATTCT+TGG - chr3_2:89549094-89549113 None:intergenic 35.0%
TGCCAAGAAGAAGAAAAAGA+AGG + chr3_2:89549098-89549117 Msa0436200:CDS 35.0%
AAAGAAGGATAAAGCTTCCA+AGG + chr3_2:89549113-89549132 Msa0436200:CDS 35.0%
TTCTGATGTTGAAAATGCAG+AGG + chr3_2:89549167-89549186 Msa0436200:CDS 35.0%
GTTCTTCTCTTTCTTCTTAG+CGG - chr3_2:89549331-89549350 None:intergenic 35.0%
TATTGATGTAAAGGAGAGCA+AGG - chr3_2:89549386-89549405 None:intergenic 35.0%
GCTAAAGCCAACTGTTTATT+CGG - chr3_2:89549442-89549461 None:intergenic 35.0%
AGACAATATCTCAAGTCCAT+TGG - chr3_2:89549491-89549510 None:intergenic 35.0%
!!! GAACTACTTTTTGTGTACTG+GGG + chr3_2:89549592-89549611 Msa0436200:three_prime_UTR 35.0%
TGATATAACCCTAGCTAGCT+GGG + chr3_2:89546866-89546885 Msa0436200:five_prime_UTR 40.0%
TGTAAGAAAAGAGTGAGAGG+CGG - chr3_2:89546942-89546961 None:intergenic 40.0%
ATCGCGTTGTTAAGAATGGT+TGG + chr3_2:89547213-89547232 Msa0436200:exon 40.0%
!! TTGTTAAGAATGGTTGGTGG+TGG + chr3_2:89547219-89547238 Msa0436200:exon 40.0%
GAAGAAGAAGAAATCGGACA+AGG + chr3_2:89547311-89547330 Msa0436200:CDS 40.0%
!! CGATTCCGATTTGGTTGATT+TGG - chr3_2:89547361-89547380 None:intergenic 40.0%
GAACAAACCTCAAAATGCTC+GGG - chr3_2:89547516-89547535 None:intergenic 40.0%
AAGCACATAAAGTGAGCAAC+AGG - chr3_2:89547609-89547628 None:intergenic 40.0%
!! CTTTTTGGAGAGTTGACGTT+CGG - chr3_2:89548567-89548586 None:intergenic 40.0%
GTCAACTCTCCAAAAAGGAA+AGG + chr3_2:89548570-89548589 Msa0436200:CDS 40.0%
!! GAGGCTCTTTTAGCTGATTT+TGG + chr3_2:89548617-89548636 Msa0436200:CDS 40.0%
TAGAACGAATGCATGAGCAA+CGG - chr3_2:89548769-89548788 None:intergenic 40.0%
ATGCATTCGTTCTACACTAC+TGG + chr3_2:89548775-89548794 Msa0436200:intron 40.0%
! CTGGTCTTTCTTTCTCTGTT+TGG + chr3_2:89548794-89548813 Msa0436200:intron 40.0%
CTAGATCTTTGAGCAAAAGC+AGG - chr3_2:89548826-89548845 None:intergenic 40.0%
TCTACACCTTTCTTATCCTG+AGG - chr3_2:89549030-89549049 None:intergenic 40.0%
! CAGGATAAGAAAGGTGTAGA+TGG + chr3_2:89549030-89549049 Msa0436200:CDS 40.0%
! GGATAAGAAAGGTGTAGATG+GGG + chr3_2:89549032-89549051 Msa0436200:CDS 40.0%
AAGGAGGTGAAAGAGTCTAA+CGG + chr3_2:89549132-89549151 Msa0436200:CDS 40.0%
TGATGTTGAAAATGCAGAGG+AGG + chr3_2:89549170-89549189 Msa0436200:CDS 40.0%
ATTACAACCAACAACCTGTG+CGG + chr3_2:89549352-89549371 Msa0436200:CDS 40.0%
GCTCTCCTTTACATCAATAC+AGG + chr3_2:89549387-89549406 Msa0436200:three_prime_UTR 40.0%
TCGGCATCATCATATGAACA+AGG - chr3_2:89549423-89549442 None:intergenic 40.0%
GATGATGCCGAATAAACAGT+TGG + chr3_2:89549432-89549451 Msa0436200:three_prime_UTR 40.0%
!! AAACAGTTGGCTTTAGCTCT+TGG + chr3_2:89549445-89549464 Msa0436200:three_prime_UTR 40.0%
! TTTGTGTACTGGGGTTGTTT+TGG + chr3_2:89549601-89549620 Msa0436200:three_prime_UTR 40.0%
! GTGCTGTGTTGCTACTTATA+TGG + chr3_2:89549678-89549697 Msa0436200:three_prime_UTR 40.0%
GTGATATAACCCTAGCTAGC+TGG + chr3_2:89546865-89546884 Msa0436200:five_prime_UTR 45.0%
GGGAAATCGAGATTAGGGTT+TGG - chr3_2:89546971-89546990 None:intergenic 45.0%
! AGATTGAGATCTGGGATTGG+GGG - chr3_2:89546993-89547012 None:intergenic 45.0%
! GAGATTGAGATCTGGGATTG+GGG - chr3_2:89546994-89547013 None:intergenic 45.0%
! GGAGATTGAGATCTGGGATT+GGG - chr3_2:89546995-89547014 None:intergenic 45.0%
! AGGAGATTGAGATCTGGGAT+TGG - chr3_2:89546996-89547015 None:intergenic 45.0%
GCGTTGTTAAGAATGGTTGG+TGG + chr3_2:89547216-89547235 Msa0436200:exon 45.0%
! ATCAAGCGCTGCAAAAACGT+TGG - chr3_2:89547283-89547302 None:intergenic 45.0%
ACCGTTGAATGCAACCTCAT+GGG + chr3_2:89547407-89547426 Msa0436200:CDS 45.0%
TTTAGATGAAGGTGACGAGG+AGG + chr3_2:89548442-89548461 Msa0436200:CDS 45.0%
TTCTTCTTGACCTCAGGTTC+AGG - chr3_2:89548515-89548534 None:intergenic 45.0%
TCAGCATTCTTCTTGACCTC+AGG - chr3_2:89548521-89548540 None:intergenic 45.0%
CGAACGTCAACTCTCCAAAA+AGG + chr3_2:89548565-89548584 Msa0436200:CDS 45.0%
GAAGGAACTTGAAGAGCTTG+AGG + chr3_2:89548598-89548617 Msa0436200:CDS 45.0%
GTGCATGTCAATCTAGATGC+AGG + chr3_2:89548946-89548965 Msa0436200:intron 45.0%
GAAGGATAAAGCTTCCAAGG+AGG + chr3_2:89549116-89549135 Msa0436200:CDS 45.0%
GTTAGACTCTTTCACCTCCT+TGG - chr3_2:89549133-89549152 None:intergenic 45.0%
AGCAGCGTCCATTTCTTTAC+TGG - chr3_2:89549259-89549278 None:intergenic 45.0%
! GCACAGGTTGTTGGTTGTAA+TGG - chr3_2:89549353-89549372 None:intergenic 45.0%
! TCTTTTACCGCACAGGTTGT+TGG - chr3_2:89549362-89549381 None:intergenic 45.0%
!!! CTGGGGTTGTTTTGGCTTTA+TGG + chr3_2:89549609-89549628 Msa0436200:three_prime_UTR 45.0%
!!! GGGTTGTTTTGGCTTTATGG+CGG + chr3_2:89549612-89549631 Msa0436200:three_prime_UTR 45.0%
GTTCTCTTCCCAGCTAGCTA+GGG - chr3_2:89546877-89546896 None:intergenic 50.0%
TGTTCTCTTCCCAGCTAGCT+AGG - chr3_2:89546878-89546897 None:intergenic 50.0%
AGGCGGAGAATGGGATATAG+AGG - chr3_2:89546925-89546944 None:intergenic 50.0%
AAGAGTGAGAGGCGGAGAAT+GGG - chr3_2:89546934-89546953 None:intergenic 50.0%
AAAGAGTGAGAGGCGGAGAA+TGG - chr3_2:89546935-89546954 None:intergenic 50.0%
TGGGGGGGAAATCGAGATTA+GGG - chr3_2:89546976-89546995 None:intergenic 50.0%
TTGGGGGGGAAATCGAGATT+AGG - chr3_2:89546977-89546996 None:intergenic 50.0%
! ATTGAGATCTGGGATTGGGG+GGG - chr3_2:89546991-89547010 None:intergenic 50.0%
! GATTGAGATCTGGGATTGGG+GGG - chr3_2:89546992-89547011 None:intergenic 50.0%
TGGTGGAAGCAGAAGAGATG+AGG + chr3_2:89547236-89547255 Msa0436200:CDS 50.0%
GGTGGAAGCAGAAGAGATGA+GGG + chr3_2:89547237-89547256 Msa0436200:CDS 50.0%
CAGAAGAGATGAGGGTTCGT+TGG + chr3_2:89547245-89547264 Msa0436200:CDS 50.0%
CGCTGCAAAAACGTTGGTGT+TGG - chr3_2:89547277-89547296 None:intergenic 50.0%
CTGCGATTCCGATTCCGATT+TGG - chr3_2:89547370-89547389 None:intergenic 50.0%
CAAATCGGAATCGGAATCGC+AGG + chr3_2:89547368-89547387 Msa0436200:CDS 50.0%
! AATCGGAATCGCAGGCGTTT+TGG + chr3_2:89547376-89547395 Msa0436200:CDS 50.0%
! ATCGGAATCGCAGGCGTTTT+GGG + chr3_2:89547377-89547396 Msa0436200:CDS 50.0%
CACCGTTGAATGCAACCTCA+TGG + chr3_2:89547406-89547425 Msa0436200:CDS 50.0%
GCCCATGAGGTTGCATTCAA+CGG - chr3_2:89547411-89547430 None:intergenic 50.0%
TGAGGGTCGGAAAATTGAGG+CGG - chr3_2:89547477-89547496 None:intergenic 50.0%
GGTTGAGGGTCGGAAAATTG+AGG - chr3_2:89547480-89547499 None:intergenic 50.0%
! GTTTGTCCTCACTGGGTTGA+GGG - chr3_2:89547494-89547513 None:intergenic 50.0%
! GGACAAACCCGAGCATTTTG+AGG + chr3_2:89547506-89547525 Msa0436200:CDS 50.0%
! TGTCACATGGGTGCGCATTT+TGG + chr3_2:89548197-89548216 Msa0436200:intron 50.0%
TCAGGTTTCACAGTGTGCTC+TGG - chr3_2:89548497-89548516 None:intergenic 50.0%
CACTGTGAAACCTGAACCTG+AGG + chr3_2:89548502-89548521 Msa0436200:CDS 50.0%
TGAAGTTCCAGCTGCACCAA+AGG + chr3_2:89548538-89548557 Msa0436200:CDS 50.0%
CAAGGCCAAGATGAATCCCA+AGG + chr3_2:89548668-89548687 Msa0436200:CDS 50.0%
TGTATTTGCAGGTGCACCTC+AGG + chr3_2:89549011-89549030 Msa0436200:intron 50.0%
GGTGCACCTCAGGATAAGAA+AGG + chr3_2:89549021-89549040 Msa0436200:intron 50.0%
GGTGTAGATGGGGATGTAGA+TGG + chr3_2:89549042-89549061 Msa0436200:CDS 50.0%
! GCAAGGTTCTTTTACCGCAC+AGG - chr3_2:89549369-89549388 None:intergenic 50.0%
GAGGTTGCATTCAACGGTGC+CGG - chr3_2:89547405-89547424 None:intergenic 55.0%
! TGCAACCTCATGGGCTGATG+TGG + chr3_2:89547416-89547435 Msa0436200:CDS 55.0%
GTCATCCACATCAGCCCATG+AGG - chr3_2:89547424-89547443 None:intergenic 55.0%
GTCGGAAAATTGAGGCGGTG+CGG - chr3_2:89547472-89547491 None:intergenic 55.0%
GGTTTGTCCTCACTGGGTTG+AGG - chr3_2:89547495-89547514 None:intergenic 55.0%
TGCTCGGGTTTGTCCTCACT+GGG - chr3_2:89547501-89547520 None:intergenic 55.0%
ATGCTCGGGTTTGTCCTCAC+TGG - chr3_2:89547502-89547521 None:intergenic 55.0%
TGAAGGTGACGAGGAGGTAG+AGG + chr3_2:89548448-89548467 Msa0436200:CDS 55.0%
AGTTCCAGCTGCACCAAAGG+AGG + chr3_2:89548541-89548560 Msa0436200:CDS 55.0%
AGTTGACGTTCGGCCTCCTT+TGG - chr3_2:89548557-89548576 None:intergenic 55.0%
TGCTAGAGCTGCTGCTCAAG+AGG + chr3_2:89549278-89549297 Msa0436200:CDS 55.0%
GGTGCGAGAGAGAGAGAGAG+AGG - chr3_2:89546904-89546923 None:intergenic 60.0%
!! ATCGCAGGCGTTTTGGGCTC+CGG + chr3_2:89547383-89547402 Msa0436200:CDS 60.0%
GGAAAATTGAGGCGGTGCGG+TGG - chr3_2:89547469-89547488 None:intergenic 60.0%
TTCCGACCCTCAACCCAGTG+AGG + chr3_2:89547485-89547504 Msa0436200:CDS 60.0%
! GTCCTCACTGGGTTGAGGGT+CGG - chr3_2:89547490-89547509 None:intergenic 60.0%
CTGCTCAAGAGGCTGCTGCA+AGG + chr3_2:89549289-89549308 Msa0436200:CDS 60.0%
AGGCTGCTGCAAGGAACGCA+AGG + chr3_2:89549298-89549317 Msa0436200:CDS 60.0%
! TCGGCCTCCTTTGGTGCAGC+TGG - chr3_2:89548548-89548567 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 89546863 89549756 89546863 ID=Msa0436200;Name=Msa0436200
chr3_2 mRNA 89546863 89549756 89546863 ID=Msa0436200-mRNA-1;Parent=Msa0436200;Name=Msa0436200-mRNA-1;_AED=0.25;_eAED=0.25;_QI=365|1|1|1|1|1|3|379|308
chr3_2 exon 89546863 89547527 89546863 ID=Msa0436200-mRNA-1:exon:26636;Parent=Msa0436200-mRNA-1
chr3_2 exon 89548419 89548689 89548419 ID=Msa0436200-mRNA-1:exon:26637;Parent=Msa0436200-mRNA-1
chr3_2 exon 89549022 89549756 89549022 ID=Msa0436200-mRNA-1:exon:26638;Parent=Msa0436200-mRNA-1
chr3_2 five_prime_UTR 89546863 89547227 89546863 ID=Msa0436200-mRNA-1:five_prime_utr;Parent=Msa0436200-mRNA-1
chr3_2 CDS 89547228 89547527 89547228 ID=Msa0436200-mRNA-1:cds;Parent=Msa0436200-mRNA-1
chr3_2 CDS 89548419 89548689 89548419 ID=Msa0436200-mRNA-1:cds;Parent=Msa0436200-mRNA-1
chr3_2 CDS 89549022 89549377 89549022 ID=Msa0436200-mRNA-1:cds;Parent=Msa0436200-mRNA-1
chr3_2 three_prime_UTR 89549378 89549756 89549378 ID=Msa0436200-mRNA-1:three_prime_utr;Parent=Msa0436200-mRNA-1
Gene Sequence

>Msa0436200

ATGGTTGGTGGTGGAAGCAGAAGAGATGAGGGTTCGTTGGTAATTTCCAACACCAACGTTTTTGCAGCGCTTGATACTTTGAAGAAGAAGAAGAAATCGGACAAGGACAAGAAGAATAATAAGGGTTCTTCCAAATCAACCAAATCGGAATCGGAATCGCAGGCGTTTTGGGCTCCGGCACCGTTGAATGCAACCTCATGGGCTGATGTGGATGACGACGATGATGATTATTATCTGACCACCGCACCGCCTCAATTTTCCGACCCTCAACCCAGTGAGGACAAACCCGAGCATTTTGAGGAATCTGAGAGTGAAGAAGATATTTTAGATGAAGGTGACGAGGAGGTAGAGGAAGAGCAAGATCATGAATCAGAACCAGAGCACACTGTGAAACCTGAACCTGAGGTCAAGAAGAATGCTGAAGTTCCAGCTGCACCAAAGGAGGCCGAACGTCAACTCTCCAAAAAGGAAAGGAAGAAGAAGGAACTTGAAGAGCTTGAGGCTCTTTTAGCTGATTTTGGAGTCACACAGAATGAAAGCAATGATGGTCAAGGCCAAGATGAATCCCAAGGTGCACCTCAGGATAAGAAAGGTGTAGATGGGGATGTAGATGGCGAAAAGAAAGAAATCACTGCTGAGTCCAAGAATGCCAAGAAGAAGAAAAAGAAGGATAAAGCTTCCAAGGAGGTGAAAGAGTCTAACGGTCAGCCCAACACTTCTGATGTTGAAAATGCAGAGGAGGATTCATCTGTTGTTGATGTGAAAGAGCGTCTTAAGAAAGTTGCTTCTATGAGGAAGAAAAAATCCAGTAAAGAAATGGACGCTGCTGCTAGAGCTGCTGCTCAAGAGGCTGCTGCAAGGAACGCAAGGCTTGCTGCCGCTAAGAAGAAAGAGAAGAACCATTACAACCAACAACCTGTGCGGTAA

Protein sequence

>Msa0436200

MVGGGSRRDEGSLVISNTNVFAALDTLKKKKKSDKDKKNNKGSSKSTKSESESQAFWAPAPLNATSWADVDDDDDDYYLTTAPPQFSDPQPSEDKPEHFEESESEEDILDEGDEEVEEEQDHESEPEHTVKPEPEVKKNAEVPAAPKEAERQLSKKERKKKELEELEALLADFGVTQNESNDGQGQDESQGAPQDKKGVDGDVDGEKKEITAESKNAKKKKKKDKASKEVKESNGQPNTSDVENAEEDSSVVDVKERLKKVASMRKKKSSKEMDAAARAAAQEAAARNARLAAAKKKEKNHYNQQPVR*