Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374740 | XP_013461356.1 | 99.457 | 368 | 2 | 0 | 1 | 368 | 1 | 368 | 0.0 | 750 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374740 | sp|Q9LPL4|SKP2A_ARATH | 73.889 | 360 | 82 | 3 | 21 | 368 | 1 | 360 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374740 | B7FL57 | 99.457 | 368 | 2 | 0 | 1 | 368 | 1 | 368 | 0.0 | 750 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0374740 | Msa0470970 | 0.845899 | 3.044745e-59 | -8.615850e-47 |
| Msa0374740 | Msa0982440 | 0.978142 | 3.278609e-145 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374740 | MtrunA17_Chr3g0125671 | 99.457 | 368 | 2 | 0 | 1 | 368 | 1 | 368 | 0.0 | 750 |
| Msa0374740 | MtrunA17_Chr1g0159531 | 82.335 | 334 | 56 | 1 | 35 | 368 | 23 | 353 | 0.0 | 567 |
| Msa0374740 | MtrunA17_Chr1g0212071 | 28.000 | 325 | 200 | 8 | 47 | 363 | 25 | 323 | 2.42e-22 | 97.4 |
| Msa0374740 | MtrunA17_Chr1g0212071 | 30.415 | 217 | 133 | 5 | 114 | 328 | 146 | 346 | 4.79e-22 | 96.7 |
| Msa0374740 | MtrunA17_Chr4g0004901 | 33.735 | 166 | 107 | 2 | 117 | 282 | 395 | 557 | 1.04e-21 | 97.1 |
| Msa0374740 | MtrunA17_Chr4g0004901 | 32.500 | 160 | 104 | 4 | 123 | 282 | 453 | 608 | 2.52e-14 | 74.3 |
| Msa0374740 | MtrunA17_Chr4g0004901 | 32.624 | 141 | 92 | 3 | 115 | 255 | 495 | 632 | 4.45e-11 | 64.3 |
| Msa0374740 | MtrunA17_Chr2g0286991 | 29.767 | 215 | 134 | 2 | 114 | 328 | 306 | 503 | 1.10e-19 | 90.5 |
| Msa0374740 | MtrunA17_Chr2g0286991 | 32.127 | 221 | 110 | 6 | 138 | 321 | 124 | 341 | 3.59e-18 | 85.9 |
| Msa0374740 | MtrunA17_Chr2g0286991 | 28.431 | 204 | 129 | 3 | 123 | 326 | 393 | 579 | 9.07e-15 | 75.9 |
| Msa0374740 | MtrunA17_Chr2g0286991 | 26.582 | 237 | 139 | 6 | 113 | 349 | 229 | 430 | 3.38e-13 | 70.9 |
| Msa0374740 | MtrunA17_Chr2g0286991 | 31.159 | 138 | 80 | 2 | 195 | 332 | 128 | 250 | 6.08e-12 | 67.0 |
| Msa0374740 | MtrunA17_Chr2g0286991 | 23.944 | 213 | 135 | 3 | 77 | 264 | 374 | 584 | 2.80e-11 | 65.1 |
| Msa0374740 | MtrunA17_Chr1g0176031 | 34.320 | 169 | 107 | 4 | 115 | 282 | 174 | 339 | 1.27e-17 | 83.2 |
| Msa0374740 | MtrunA17_Chr1g0176031 | 29.231 | 195 | 111 | 4 | 114 | 283 | 121 | 313 | 5.09e-16 | 78.6 |
| Msa0374740 | MtrunA17_Chr1g0176031 | 27.103 | 214 | 134 | 4 | 133 | 329 | 84 | 292 | 4.05e-12 | 66.6 |
| Msa0374740 | MtrunA17_Chr4g0063841 | 31.183 | 186 | 102 | 2 | 123 | 282 | 201 | 386 | 1.42e-17 | 84.3 |
| Msa0374740 | MtrunA17_Chr7g0272131 | 34.437 | 151 | 97 | 2 | 127 | 277 | 387 | 535 | 2.80e-17 | 83.6 |
| Msa0374740 | MtrunA17_Chr7g0272131 | 34.731 | 167 | 106 | 3 | 117 | 283 | 403 | 566 | 1.02e-13 | 72.4 |
| Msa0374740 | MtrunA17_Chr7g0272131 | 27.888 | 251 | 143 | 8 | 115 | 361 | 273 | 489 | 2.47e-12 | 68.2 |
| Msa0374740 | MtrunA17_Chr1g0149351 | 26.721 | 247 | 124 | 4 | 123 | 313 | 210 | 455 | 1.57e-16 | 81.3 |
| Msa0374740 | MtrunA17_Chr1g0149351 | 26.442 | 208 | 139 | 2 | 123 | 330 | 184 | 377 | 2.71e-13 | 71.2 |
| Msa0374740 | MtrunA17_Chr1g0149351 | 28.324 | 173 | 119 | 5 | 113 | 282 | 464 | 634 | 4.31e-11 | 64.3 |
| Msa0374740 | MtrunA17_Chr1g0149351 | 32.967 | 91 | 61 | 0 | 192 | 282 | 174 | 264 | 7.97e-11 | 63.5 |
| Msa0374740 | MtrunA17_Chr3g0137771 | 25.926 | 216 | 107 | 3 | 111 | 273 | 196 | 411 | 2.56e-15 | 77.4 |
| Msa0374740 | MtrunA17_Chr3g0137771 | 31.868 | 91 | 62 | 0 | 192 | 282 | 172 | 262 | 5.33e-11 | 63.9 |
| Msa0374740 | MtrunA17_Chr4g0070541 | 31.892 | 185 | 121 | 4 | 92 | 274 | 468 | 649 | 8.15e-15 | 75.9 |
| Msa0374740 | MtrunA17_Chr4g0073771 | 23.077 | 286 | 181 | 7 | 31 | 278 | 1 | 285 | 1.50e-14 | 73.6 |
| Msa0374740 | MtrunA17_Chr1g0152951 | 32.086 | 187 | 120 | 5 | 77 | 261 | 257 | 438 | 2.84e-13 | 70.9 |
| Msa0374740 | MtrunA17_Chr4g0070521 | 29.952 | 207 | 130 | 5 | 92 | 286 | 99 | 302 | 5.39e-13 | 69.3 |
| Msa0374740 | MtrunA17_Chr8g0347711 | 24.000 | 300 | 158 | 7 | 96 | 348 | 83 | 359 | 5.63e-13 | 69.7 |
| Msa0374740 | MtrunA17_Chr4g0017381 | 30.000 | 150 | 100 | 2 | 115 | 264 | 155 | 299 | 1.12e-12 | 68.2 |
| Msa0374740 | MtrunA17_Chr4g0008501 | 27.547 | 265 | 168 | 8 | 76 | 324 | 302 | 558 | 1.77e-11 | 65.5 |
| Msa0374740 | MtrunA17_Chr8g0352431 | 29.907 | 214 | 125 | 6 | 64 | 264 | 366 | 567 | 3.35e-11 | 64.7 |
| Msa0374740 | MtrunA17_Chr2g0300611 | 28.750 | 160 | 111 | 2 | 128 | 286 | 509 | 666 | 4.57e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0374740 | AT1G21410.2 | 73.889 | 360 | 82 | 3 | 21 | 368 | 1 | 360 | 0.0 | 533 |
| Msa0374740 | AT1G21410.1 | 73.889 | 360 | 82 | 3 | 21 | 368 | 1 | 360 | 0.0 | 533 |
| Msa0374740 | AT1G77000.2 | 70.718 | 362 | 93 | 3 | 10 | 368 | 9 | 360 | 0.0 | 522 |
| Msa0374740 | AT1G77000.1 | 70.718 | 362 | 93 | 3 | 10 | 368 | 9 | 360 | 0.0 | 522 |
| Msa0374740 | AT1G77000.3 | 68.908 | 238 | 64 | 1 | 10 | 247 | 9 | 236 | 8.52e-115 | 334 |
| Msa0374740 | AT1G77000.3 | 27.273 | 220 | 135 | 4 | 121 | 330 | 22 | 226 | 2.53e-12 | 66.6 |
| Msa0374740 | AT1G77000.4 | 68.908 | 238 | 64 | 1 | 10 | 247 | 9 | 236 | 8.52e-115 | 334 |
| Msa0374740 | AT1G77000.4 | 27.273 | 220 | 135 | 4 | 121 | 330 | 22 | 226 | 2.53e-12 | 66.6 |
| Msa0374740 | AT5G23340.1 | 30.469 | 256 | 155 | 6 | 114 | 354 | 136 | 383 | 1.76e-26 | 109 |
| Msa0374740 | AT5G23340.1 | 30.729 | 192 | 114 | 3 | 168 | 347 | 86 | 270 | 1.34e-18 | 87.0 |
| Msa0374740 | AT4G15475.1 | 29.870 | 231 | 141 | 5 | 98 | 328 | 372 | 581 | 8.96e-22 | 97.4 |
| Msa0374740 | AT4G15475.1 | 28.372 | 215 | 137 | 3 | 114 | 328 | 306 | 503 | 1.60e-20 | 93.6 |
| Msa0374740 | AT4G15475.1 | 27.670 | 206 | 146 | 3 | 77 | 282 | 193 | 395 | 3.45e-16 | 80.5 |
| Msa0374740 | AT4G15475.1 | 28.455 | 246 | 130 | 7 | 137 | 345 | 123 | 359 | 7.68e-15 | 76.3 |
| Msa0374740 | AT4G15475.1 | 24.766 | 214 | 132 | 4 | 77 | 264 | 374 | 584 | 2.15e-12 | 68.9 |
| Msa0374740 | AT3G58530.1 | 28.085 | 235 | 153 | 6 | 114 | 336 | 123 | 353 | 3.76e-19 | 88.2 |
| Msa0374740 | AT3G58530.1 | 25.962 | 208 | 134 | 4 | 141 | 332 | 94 | 297 | 1.75e-14 | 74.3 |
| Msa0374740 | AT5G01720.1 | 28.696 | 230 | 137 | 3 | 77 | 282 | 280 | 506 | 1.92e-18 | 87.4 |
| Msa0374740 | AT5G01720.1 | 26.848 | 257 | 136 | 7 | 113 | 342 | 83 | 314 | 3.87e-11 | 65.1 |
| Msa0374740 | AT5G27920.1 | 30.435 | 161 | 110 | 2 | 122 | 282 | 345 | 503 | 1.35e-15 | 78.6 |
| Msa0374740 | AT1G47056.1 | 33.537 | 164 | 103 | 4 | 111 | 272 | 267 | 426 | 2.76e-14 | 74.3 |
| Msa0374740 | AT5G25350.1 | 28.283 | 198 | 115 | 2 | 113 | 283 | 178 | 375 | 2.03e-13 | 72.0 |
| Msa0374740 | AT5G25350.1 | 28.384 | 229 | 142 | 6 | 130 | 341 | 143 | 366 | 4.94e-13 | 70.9 |
| Msa0374740 | AT2G25490.1 | 26.768 | 198 | 118 | 3 | 115 | 285 | 190 | 387 | 4.92e-13 | 70.9 |
| Msa0374740 | AT2G25490.1 | 33.766 | 154 | 93 | 4 | 135 | 280 | 124 | 276 | 3.77e-12 | 68.2 |
| Msa0374740 | AT2G25490.1 | 30.247 | 162 | 90 | 4 | 195 | 355 | 165 | 304 | 6.69e-12 | 67.4 |
| Msa0374740 | AT4G07400.1 | 31.515 | 165 | 108 | 3 | 122 | 284 | 310 | 471 | 2.59e-12 | 68.6 |
| Msa0374740 | AT2G06040.1 | 27.184 | 206 | 145 | 4 | 71 | 274 | 532 | 734 | 1.75e-11 | 66.2 |
| Msa0374740 | AT5G67140.1 | 25.862 | 232 | 113 | 9 | 42 | 267 | 10 | 188 | 1.77e-11 | 63.9 |
| Msa0374740 | AT5G57900.1 | 28.387 | 155 | 91 | 3 | 117 | 253 | 101 | 253 | 2.56e-11 | 64.3 |
Find 118 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTAAAGGCAAAGAATT+TGG | 0.188931 | 3_1:-74268569 | Msa0374740:five_prime_UTR |
| GTTTAGCTGTATAAATTTAT+TGG | 0.193446 | 3_1:-74265359 | Msa0374740:three_prime_UTR |
| AAATTCTTTGCCTTTAATTT+AGG | 0.201568 | 3_1:+74268571 | None:intergenic |
| TTACAAAGAACCTAAATTAA+AGG | 0.229250 | 3_1:-74268581 | Msa0374740:five_prime_UTR |
| TCTAAACGTTGTTTGGCTTT+TGG | 0.250293 | 3_1:-74265315 | Msa0374740:three_prime_UTR |
| TTTAATTAATACCTCAACTA+TGG | 0.275345 | 3_1:-74265423 | Msa0374740:three_prime_UTR |
| GACTTCTTCTAAACGTTGTT+TGG | 0.301228 | 3_1:-74265322 | Msa0374740:three_prime_UTR |
| AATGCTCTGGCCTACCTTGC+TGG | 0.303145 | 3_1:-74266445 | Msa0374740:CDS |
| CAGACGGTGATTCGAGCTTC+TGG | 0.354879 | 3_1:-74267734 | Msa0374740:CDS |
| ATTTGGCTTTATCTTCTAAA+CGG | 0.360436 | 3_1:-74268552 | Msa0374740:five_prime_UTR |
| ACCAGGGGAAAGGGGAGGGG+AGG | 0.360825 | 3_1:+74265523 | None:intergenic |
| TTGCTCGTTTATCACTTTCA+TGG | 0.361295 | 3_1:-74267673 | Msa0374740:intron |
| ATCTGCATCAAAAGCTCAAC+AGG | 0.369088 | 3_1:+74267776 | None:intergenic |
| GAGAATCTTATGATGGTTGC+TGG | 0.376471 | 3_1:-74267854 | Msa0374740:CDS |
| CCCTCCCCTCCCCTTTCCCC+TGG | 0.378832 | 3_1:-74265524 | Msa0374740:three_prime_UTR |
| CAGGGGAAAGGGGAGGGGAG+GGG | 0.385932 | 3_1:+74265525 | None:intergenic |
| CCTGCTCTCCACACATGCTC+AGG | 0.394593 | 3_1:-74265719 | Msa0374740:CDS |
| CTGAATGAATAACAGGCTAT+TGG | 0.394963 | 3_1:-74266269 | Msa0374740:intron |
| CAGTTGCAGTCTTTGAACCT+TGG | 0.398849 | 3_1:-74266233 | Msa0374740:CDS |
| ATAAATTTATACAGCTAAAC+AGG | 0.399414 | 3_1:+74265362 | None:intergenic |
| AGCTTCTGATACTGCACTTC+AGG | 0.401548 | 3_1:-74266374 | Msa0374740:intron |
| ACTCACTCCTTCAGCTGTTC+AGG | 0.403041 | 3_1:-74265759 | Msa0374740:CDS |
| TGCCCTCACCTGAGGTCCCT+TGG | 0.403174 | 3_1:-74265923 | Msa0374740:CDS |
| CATATCTACACCAGGGGAAA+GGG | 0.408362 | 3_1:+74265514 | None:intergenic |
| TTCGAGGAAGTGCCCTTTGA+AGG | 0.410954 | 3_1:-74265574 | Msa0374740:three_prime_UTR |
| TGGAGAGATTCTATTTACTT+TGG | 0.417618 | 3_1:-74267698 | Msa0374740:CDS |
| CACAAAGCAAAGTGAAGAAC+AGG | 0.424932 | 3_1:-74265853 | Msa0374740:CDS |
| TACACCAGGGGAAAGGGGAG+GGG | 0.428438 | 3_1:+74265520 | None:intergenic |
| TGTGGCTGTGTCTATATAAC+AGG | 0.428750 | 3_1:-74266134 | Msa0374740:intron |
| CTTCTGGTGTTTGTCGTGGT+TGG | 0.432543 | 3_1:-74267718 | Msa0374740:CDS |
| CCAGGGGAAAGGGGAGGGGA+GGG | 0.437972 | 3_1:+74265524 | None:intergenic |
| TTTGGCTTTATCTTCTAAAC+GGG | 0.438350 | 3_1:-74268551 | Msa0374740:intron |
| CAAACTTGGGAACAAGAGAT+AGG | 0.439501 | 3_1:+74266674 | None:intergenic |
| CAACTGGACGACAATGTTGT+TGG | 0.451784 | 3_1:-74266613 | Msa0374740:CDS |
| CCTGAGCATGTGTGGAGAGC+AGG | 0.456485 | 3_1:+74265719 | None:intergenic |
| AGACAATGCCATGTATTCAT+TGG | 0.463323 | 3_1:-74265876 | Msa0374740:CDS |
| TGCTGAGGTCAAGAATCTGC+AGG | 0.470249 | 3_1:+74266566 | None:intergenic |
| TCGTCAAGATAAGCCACAAC+TGG | 0.470692 | 3_1:-74266629 | Msa0374740:CDS |
| TTGGTGAAGGGAAACTGAAA+TGG | 0.472951 | 3_1:-74267921 | Msa0374740:exon |
| AGCATTTAGTGACAATGCTC+TGG | 0.474697 | 3_1:-74266458 | Msa0374740:CDS |
| TCACTGTATGCTATTGCTCA+TGG | 0.475331 | 3_1:-74266520 | Msa0374740:CDS |
| CACTTCTCCGAGCCCTTCAA+AGG | 0.480132 | 3_1:+74265561 | None:intergenic |
| CATGTGGTTTATTAATGAGC+AGG | 0.481617 | 3_1:+74265599 | None:intergenic |
| GATGCAGATTCTGTCTCTTG+TGG | 0.484308 | 3_1:-74267762 | Msa0374740:CDS |
| TGTGACAAAGTTGGTGATGT+TGG | 0.489189 | 3_1:-74266206 | Msa0374740:CDS |
| AAATCAACTGTTCTTAGATC+AGG | 0.489805 | 3_1:+74266158 | None:intergenic |
| TGCAGTCTTTGAACCTTGGA+TGG | 0.491087 | 3_1:-74266229 | Msa0374740:CDS |
| CTACACCAGGGGAAAGGGGA+GGG | 0.495498 | 3_1:+74265519 | None:intergenic |
| AGTACAGTCCAAGGGACCTC+AGG | 0.495892 | 3_1:+74265915 | None:intergenic |
| TCTACACCAGGGGAAAGGGG+AGG | 0.496300 | 3_1:+74265518 | None:intergenic |
| ATATGTTTGTGACTTTATGT+TGG | 0.498136 | 3_1:-74265496 | Msa0374740:three_prime_UTR |
| AGATGATAGTGTGATTGCTT+TGG | 0.499364 | 3_1:-74265954 | Msa0374740:CDS |
| GTTTATTAATGAGCAGGATG+AGG | 0.501557 | 3_1:+74265605 | None:intergenic |
| TAATAAACCACATGACTTCG+AGG | 0.510111 | 3_1:-74265590 | Msa0374740:three_prime_UTR |
| ATGGTTGCTGGTGGTGAGAA+AGG | 0.513155 | 3_1:-74267842 | Msa0374740:CDS |
| AGTATGAGCACAACAACAAA+TGG | 0.514689 | 3_1:+74265450 | None:intergenic |
| ACATATCTACACCAGGGGAA+AGG | 0.516394 | 3_1:+74265513 | None:intergenic |
| AGTGTGATTGCTTTGGCAAA+CGG | 0.522528 | 3_1:-74265947 | Msa0374740:CDS |
| GCAAAGTGAAGAACAGGATG+TGG | 0.523649 | 3_1:-74265847 | Msa0374740:CDS |
| GAAATGATGAAGATGGACTA+AGG | 0.526857 | 3_1:-74265808 | Msa0374740:CDS |
| CACTCCTTCAGCTGTTCAGG+CGG | 0.526906 | 3_1:-74265756 | Msa0374740:CDS |
| GAAGGGAAACTGAAATGGTT+GGG | 0.529142 | 3_1:-74267916 | Msa0374740:exon |
| CAACTTTGTCACACCATCCA+AGG | 0.529983 | 3_1:+74266216 | None:intergenic |
| CTGCTCTCCACACATGCTCA+GGG | 0.533137 | 3_1:-74265718 | Msa0374740:CDS |
| AAAGGAGGGAACATGAAGGT+TGG | 0.533533 | 3_1:-74267824 | Msa0374740:CDS |
| TCGAGGAAGTGCCCTTTGAA+GGG | 0.540167 | 3_1:-74265573 | Msa0374740:three_prime_UTR |
| ATATCTACACCAGGGGAAAG+GGG | 0.541110 | 3_1:+74265515 | None:intergenic |
| GTCCAAGGGACCTCAGGTGA+GGG | 0.542888 | 3_1:+74265921 | None:intergenic |
| GTCTCTTGTGGATGATCAGA+CGG | 0.544667 | 3_1:-74267750 | Msa0374740:CDS |
| TTTATTGGAAGACATGGACT+TGG | 0.545315 | 3_1:-74265344 | Msa0374740:three_prime_UTR |
| GAAGTCCATTGTGCTTGTGC+TGG | 0.549870 | 3_1:-74265656 | Msa0374740:CDS |
| GCTTTGTGCCAATGAATACA+TGG | 0.550039 | 3_1:+74265868 | None:intergenic |
| CGAGCTTCTGGTGTTTGTCG+TGG | 0.551970 | 3_1:-74267722 | Msa0374740:CDS |
| ACAACATTGTCGTCCAGTTG+TGG | 0.553257 | 3_1:+74266616 | None:intergenic |
| TATAAATTTATTGGAAGACA+TGG | 0.554470 | 3_1:-74265350 | Msa0374740:three_prime_UTR |
| CTGAAAGTTCTAAATCTATG+TGG | 0.556057 | 3_1:-74266409 | Msa0374740:CDS |
| TTTATTAATGAGCAGGATGA+GGG | 0.556509 | 3_1:+74265606 | None:intergenic |
| ACTTCTCCGAGCCCTTCAAA+GGG | 0.556622 | 3_1:+74265562 | None:intergenic |
| TCTACAGAAACCAGCAAGGT+AGG | 0.559137 | 3_1:+74266435 | None:intergenic |
| TGAAGGGAAACTGAAATGGT+TGG | 0.561758 | 3_1:-74267917 | Msa0374740:exon |
| GTTGCTGGTGGTGAGAAAGG+AGG | 0.562599 | 3_1:-74267839 | Msa0374740:CDS |
| AAAGGAGGAAATGATGAAGA+TGG | 0.563283 | 3_1:-74265815 | Msa0374740:CDS |
| CAAAGTGAAGAACAGGATGT+GGG | 0.569923 | 3_1:-74265846 | Msa0374740:CDS |
| GAAGGATAATTTAAAGACTG+AGG | 0.570173 | 3_1:-74267894 | Msa0374740:CDS |
| AAGGAGTGAGTGAAGTGCAC+TGG | 0.570780 | 3_1:+74265771 | None:intergenic |
| GGAAACTGAAATGGTTGGGA+AGG | 0.572501 | 3_1:-74267912 | Msa0374740:exon |
| GAGGGAAAGCGTTCATTGCA+CGG | 0.578968 | 3_1:+74265624 | None:intergenic |
| GGCACTTCCTCGAAGTCATG+TGG | 0.591410 | 3_1:+74265583 | None:intergenic |
| GTCACAAACATATCTACACC+AGG | 0.593560 | 3_1:+74265506 | None:intergenic |
| AGGATGTGGGGATCTGTGAA+AGG | 0.597813 | 3_1:-74265833 | Msa0374740:CDS |
| ATCTTAAAAGTCCATAGTTG+AGG | 0.598502 | 3_1:+74265412 | None:intergenic |
| TCTTGCAGAAGTACAGTCCA+AGG | 0.602542 | 3_1:+74265906 | None:intergenic |
| TTGCTGGTGGTGAGAAAGGA+GGG | 0.605825 | 3_1:-74267838 | Msa0374740:CDS |
| AGCACAAGCACAATGGACTT+CGG | 0.606895 | 3_1:+74265658 | None:intergenic |
| GGAGTGATGAGTCTAGCATA+TGG | 0.608969 | 3_1:-74266185 | Msa0374740:CDS |
| GAAGTGCCCTTTGAAGGGCT+CGG | 0.610683 | 3_1:-74265568 | Msa0374740:three_prime_UTR |
| AGTCCAAGGGACCTCAGGTG+AGG | 0.614611 | 3_1:+74265920 | None:intergenic |
| CAAACGGATGCCCTCACCTG+AGG | 0.618431 | 3_1:-74265931 | Msa0374740:CDS |
| AATGCCTCCCTGAGCATGTG+TGG | 0.621155 | 3_1:+74265711 | None:intergenic |
| TGAGAAAGGAGGGAACATGA+AGG | 0.625459 | 3_1:-74267828 | Msa0374740:CDS |
| CTGACAAAACTAAACATCAG+TGG | 0.630947 | 3_1:-74266487 | Msa0374740:CDS |
| GTTGTGGCTTATCTTGACGA+AGG | 0.635647 | 3_1:+74266632 | None:intergenic |
| TGGTGTGATCACTGAATGGA+AGG | 0.636114 | 3_1:-74267804 | Msa0374740:CDS |
| AGGTTGGTGTGATCACTGAA+TGG | 0.638216 | 3_1:-74267808 | Msa0374740:CDS |
| TAACAAGAACATGAACAACT+TGG | 0.639202 | 3_1:-74266698 | Msa0374740:CDS |
| CAAACCGCCTGAACAGCTGA+AGG | 0.645204 | 3_1:+74265752 | None:intergenic |
| CTAAGAACAGTTGATTTGTG+TGG | 0.647210 | 3_1:-74266152 | Msa0374740:CDS |
| CACAAACATATCTACACCAG+GGG | 0.651313 | 3_1:+74265508 | None:intergenic |
| AGGCATTCACTCATCATGAG+TGG | 0.653984 | 3_1:-74265695 | Msa0374740:CDS |
| CATGACCAGCACAAGCACAA+TGG | 0.654961 | 3_1:+74265651 | None:intergenic |
| CTTGGATGGTGTGACAAAGT+TGG | 0.660586 | 3_1:-74266215 | Msa0374740:CDS |
| ATGTGGGGATCTGTGAAAGG+AGG | 0.661005 | 3_1:-74265830 | Msa0374740:CDS |
| ATGAAAGTGATAAACGAGCA+AGG | 0.662700 | 3_1:+74267675 | None:intergenic |
| CTCTCCACACATGCTCAGGG+AGG | 0.670816 | 3_1:-74265715 | Msa0374740:CDS |
| TCACAAACATATCTACACCA+GGG | 0.674070 | 3_1:+74265507 | None:intergenic |
| AAAGTGAAGAACAGGATGTG+GGG | 0.676311 | 3_1:-74265845 | Msa0374740:CDS |
| CTTGCAGAAGTACAGTCCAA+GGG | 0.678760 | 3_1:+74265907 | None:intergenic |
| AATCTTATGATGGTTGCTGG+TGG | 0.732364 | 3_1:-74267851 | Msa0374740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATTAATTGATTAAAGTTT+TGG | - | chr3_1:74265920-74265939 | Msa0374740:CDS | 10.0% |
| !!! | TTTTTTGTTTAAATTGATTT+TGG | - | chr3_1:74266378-74266397 | Msa0374740:CDS | 10.0% |
| !!! | GTTCTTTGTAATAATTTTTA+GGG | + | chr3_1:74265339-74265358 | None:intergenic | 15.0% |
| !! | AAAACAAAAAATGATAGTTA+AGG | + | chr3_1:74265416-74265435 | None:intergenic | 15.0% |
| !!! | AAAACTTTATCATTTTTTTC+TGG | + | chr3_1:74265493-74265512 | None:intergenic | 15.0% |
| !! | ACAAAATCAAAATATTAAGA+GGG | + | chr3_1:74265560-74265579 | None:intergenic | 15.0% |
| !!! | ATATTATTCATCAATTCTTT+TGG | - | chr3_1:74266435-74266454 | Msa0374740:CDS | 15.0% |
| !!! | GGTTCTTTGTAATAATTTTT+AGG | + | chr3_1:74265340-74265359 | None:intergenic | 20.0% |
| !! | TTACAAAGAACCTAAATTAA+AGG | - | chr3_1:74265348-74265367 | Msa0374740:three_prime_UTR | 20.0% |
| !!! | AAATTCTTTGCCTTTAATTT+AGG | + | chr3_1:74265361-74265380 | None:intergenic | 20.0% |
| !! | TAAATTAAAGGCAAAGAATT+TGG | - | chr3_1:74265360-74265379 | Msa0374740:three_prime_UTR | 20.0% |
| !!! | TTTTTTGTTTTACTCTTTCA+CGG | - | chr3_1:74265425-74265444 | Msa0374740:three_prime_UTR | 20.0% |
| !! | CACAAAATCAAAATATTAAG+AGG | + | chr3_1:74265561-74265580 | None:intergenic | 20.0% |
| !!! | ATAAAGGGTCTATTTTTTTA+AGG | + | chr3_1:74265786-74265805 | None:intergenic | 20.0% |
| !! | GGGATAATTACAATTATAAT+TGG | + | chr3_1:74265838-74265857 | None:intergenic | 20.0% |
| !!! | TGAAACTATTTTTCTCAAAT+TGG | - | chr3_1:74266328-74266347 | Msa0374740:intron | 20.0% |
| !!! | GAAACTATTTTTCTCAAATT+GGG | - | chr3_1:74266329-74266348 | Msa0374740:intron | 20.0% |
| !!! | AAACTATTTTTCTCAAATTG+GGG | - | chr3_1:74266330-74266349 | Msa0374740:intron | 20.0% |
| !! | GATGAATAATATTGAAAACA+TGG | + | chr3_1:74266427-74266446 | None:intergenic | 20.0% |
| !!! | ATTTTGATGTTTTCAAAATG+TGG | - | chr3_1:74266571-74266590 | Msa0374740:CDS | 20.0% |
| !! | ATTAAACTGTATATTCAAAC+AGG | - | chr3_1:74266785-74266804 | Msa0374740:intron | 20.0% |
| !! | TTAAACTGTATATTCAAACA+GGG | - | chr3_1:74266786-74266805 | Msa0374740:intron | 20.0% |
| !! | TAAGAAATTGAATTCAACAT+TGG | + | chr3_1:74267071-74267090 | None:intergenic | 20.0% |
| !! | TGTTCATAAAACTATAAAAG+TGG | - | chr3_1:74267134-74267153 | Msa0374740:intron | 20.0% |
| !! | CAATCATATTAAAACTAAGA+TGG | - | chr3_1:74267608-74267627 | Msa0374740:intron | 20.0% |
| !! | ATTGTTATATGTTTATAACG+AGG | - | chr3_1:74267932-74267951 | Msa0374740:five_prime_UTR | 20.0% |
| !! | TTGTTATATGTTTATAACGA+GGG | - | chr3_1:74267933-74267952 | Msa0374740:five_prime_UTR | 20.0% |
| !! | TTTAATTAATACCTCAACTA+TGG | - | chr3_1:74268506-74268525 | Msa0374740:intron | 20.0% |
| !! | ATAAATTTATACAGCTAAAC+AGG | + | chr3_1:74268570-74268589 | None:intergenic | 20.0% |
| !! | GTTTAGCTGTATAAATTTAT+TGG | - | chr3_1:74268570-74268589 | Msa0374740:five_prime_UTR | 20.0% |
| !! | TATAAATTTATTGGAAGACA+TGG | - | chr3_1:74268579-74268598 | Msa0374740:five_prime_UTR | 20.0% |
| !!! | GTAATAATTTTTAGGGTGTT+TGG | + | chr3_1:74265332-74265351 | None:intergenic | 25.0% |
| !!! | ATTTGGCTTTATCTTCTAAA+CGG | - | chr3_1:74265377-74265396 | Msa0374740:three_prime_UTR | 25.0% |
| ! | AAAAATGATAGTTAAGGAAG+TGG | + | chr3_1:74265410-74265429 | None:intergenic | 25.0% |
| ! | AATCATCAAGAAATGAAAGT+GGG | + | chr3_1:74265529-74265548 | None:intergenic | 25.0% |
| ! | AAATCATCAAGAAATGAAAG+TGG | + | chr3_1:74265530-74265549 | None:intergenic | 25.0% |
| !!! | GCACTTTTTTTAATCAAACT+AGG | + | chr3_1:74265608-74265627 | None:intergenic | 25.0% |
| ! | TGTAATTGAGAAATTTGTGA+TGG | - | chr3_1:74265736-74265755 | Msa0374740:CDS | 25.0% |
| ! | GTAATTGAGAAATTTGTGAT+GGG | - | chr3_1:74265737-74265756 | Msa0374740:CDS | 25.0% |
| !!! | AAAGTTTTGGAATTTTGCTA+TGG | - | chr3_1:74265933-74265952 | Msa0374740:CDS | 25.0% |
| !!! | GTTTTTTGAGAATCTTATGA+TGG | - | chr3_1:74266068-74266087 | Msa0374740:intron | 25.0% |
| !!! | ATGAATTGCTTACTTTTGAA+GGG | - | chr3_1:74266501-74266520 | Msa0374740:CDS | 25.0% |
| !!! | ATATGTGAGTTTTATTGACA+TGG | + | chr3_1:74266553-74266572 | None:intergenic | 25.0% |
| ! | TAAAGTAAACAAAAGCTACA+GGG | + | chr3_1:74266891-74266910 | None:intergenic | 25.0% |
| !! | ATTATGTAATTCCTCTTTTC+AGG | - | chr3_1:74267206-74267225 | Msa0374740:intron | 25.0% |
| ! | ATATGTTTGTGACTTTATGT+TGG | - | chr3_1:74268433-74268452 | Msa0374740:intron | 25.0% |
| !! | TTTGGCTTTATCTTCTAAAC+GGG | - | chr3_1:74265378-74265397 | Msa0374740:three_prime_UTR | 30.0% |
| !!! | AGTTTTAAACACAGAACAAG+TGG | + | chr3_1:74265684-74265703 | None:intergenic | 30.0% |
| !! | CATCAGAATTCTTTGATTTG+TGG | - | chr3_1:74265887-74265906 | Msa0374740:CDS | 30.0% |
| !!! | CTAGGAAAGTTGATGATTTT+TGG | - | chr3_1:74265989-74266008 | Msa0374740:intron | 30.0% |
| !!! | AAGTTGATGATTTTTGGTGA+AGG | - | chr3_1:74265995-74266014 | Msa0374740:intron | 30.0% |
| !!! | AGTTGATGATTTTTGGTGAA+GGG | - | chr3_1:74265996-74266015 | Msa0374740:intron | 30.0% |
| GAAGGATAATTTAAAGACTG+AGG | - | chr3_1:74266035-74266054 | Msa0374740:intron | 30.0% | |
| TGGAGAGATTCTATTTACTT+TGG | - | chr3_1:74266231-74266250 | Msa0374740:CDS | 30.0% | |
| !! | TCAAATTGGGGTATTTTTCT+TGG | - | chr3_1:74266342-74266361 | Msa0374740:intron | 30.0% |
| !! | GATGAATTGCTTACTTTTGA+AGG | - | chr3_1:74266500-74266519 | Msa0374740:CDS | 30.0% |
| !! | TGAATTGCTTACTTTTGAAG+GGG | - | chr3_1:74266502-74266521 | Msa0374740:CDS | 30.0% |
| ! | TTGATGTTTTCAAAATGTGG+TGG | - | chr3_1:74266574-74266593 | Msa0374740:CDS | 30.0% |
| ! | TTAAGTTGTTCATCCAAACA+GGG | - | chr3_1:74266749-74266768 | Msa0374740:intron | 30.0% |
| GTAAAGTAAACAAAAGCTAC+AGG | + | chr3_1:74266892-74266911 | None:intergenic | 30.0% | |
| CCAACTTCAGAAATTATAAG+AGG | + | chr3_1:74266948-74266967 | None:intergenic | 30.0% | |
| !! | CCTCTTATAATTTCTGAAGT+TGG | - | chr3_1:74266945-74266964 | Msa0374740:intron | 30.0% |
| GTTGACGTTATAATGTTTCT+TGG | - | chr3_1:74267026-74267045 | Msa0374740:intron | 30.0% | |
| ATTGAATTCAACATTGGAAC+CGG | + | chr3_1:74267065-74267084 | None:intergenic | 30.0% | |
| TAACAAGAACATGAACAACT+TGG | - | chr3_1:74267231-74267250 | Msa0374740:intron | 30.0% | |
| !!! | TGTTTAGTTTTGTCAGATCA+CGG | + | chr3_1:74267438-74267457 | None:intergenic | 30.0% |
| !! | CTGAAAGTTCTAAATCTATG+TGG | - | chr3_1:74267520-74267539 | Msa0374740:intron | 30.0% |
| TTCATTCAGTAATGTCTCAT+GGG | + | chr3_1:74267649-74267668 | None:intergenic | 30.0% | |
| ATTCATTCAGTAATGTCTCA+TGG | + | chr3_1:74267650-74267669 | None:intergenic | 30.0% | |
| GACATTACTGAATGAATAAC+AGG | - | chr3_1:74267653-74267672 | Msa0374740:intron | 30.0% | |
| AAATCAACTGTTCTTAGATC+AGG | + | chr3_1:74267774-74267793 | None:intergenic | 30.0% | |
| GTTTATAACGAGGGTAATTT+CGG | - | chr3_1:74267942-74267961 | Msa0374740:five_prime_UTR | 30.0% | |
| TTTATTAATGAGCAGGATGA+GGG | + | chr3_1:74268326-74268345 | None:intergenic | 30.0% | |
| ATCTTAAAAGTCCATAGTTG+AGG | + | chr3_1:74268520-74268539 | None:intergenic | 30.0% | |
| AATTTGCAGAAAGCAACATG+GGG | + | chr3_1:74265858-74265877 | None:intergenic | 35.0% | |
| CAATTTGCAGAAAGCAACAT+GGG | + | chr3_1:74265859-74265878 | None:intergenic | 35.0% | |
| ATGAAAGTGATAAACGAGCA+AGG | + | chr3_1:74266257-74266276 | None:intergenic | 35.0% | |
| TTGCTCGTTTATCACTTTCA+TGG | - | chr3_1:74266256-74266275 | Msa0374740:CDS | 35.0% | |
| AATATTGAAAACATGGCACC+AGG | + | chr3_1:74266420-74266439 | None:intergenic | 35.0% | |
| CAGAAAATGTATAGCTGAGA+AGG | - | chr3_1:74266614-74266633 | Msa0374740:CDS | 35.0% | |
| ! | ATAGCTGAGAAGGATTTGTT+TGG | - | chr3_1:74266624-74266643 | Msa0374740:CDS | 35.0% |
| ! | TGAGAAGGATTTGTTTGGAT+TGG | - | chr3_1:74266629-74266648 | Msa0374740:CDS | 35.0% |
| ! | AGGATTTGTTTGGATTGGAT+TGG | - | chr3_1:74266634-74266653 | Msa0374740:CDS | 35.0% |
| ! | CTTAAGTTGTTCATCCAAAC+AGG | - | chr3_1:74266748-74266767 | Msa0374740:intron | 35.0% |
| TTCCACAGCAAAAATACAAC+AGG | + | chr3_1:74266833-74266852 | None:intergenic | 35.0% | |
| AGATTTATTCCAGGAATGCA+GGG | + | chr3_1:74266975-74266994 | None:intergenic | 35.0% | |
| AAGACTTGCAGATTTATTCC+AGG | + | chr3_1:74266984-74267003 | None:intergenic | 35.0% | |
| AAAAGATGGGGGAAAATCAA+CGG | + | chr3_1:74267098-74267117 | None:intergenic | 35.0% | |
| TTCTTGTTACACCTGAAAAG+AGG | + | chr3_1:74267220-74267239 | None:intergenic | 35.0% | |
| ! | GTTTGCAGTTTTGCAAACTT+GGG | + | chr3_1:74267271-74267290 | None:intergenic | 35.0% |
| ! | AGTTTGCAGTTTTGCAAACT+TGG | + | chr3_1:74267272-74267291 | None:intergenic | 35.0% |
| CTGACAAAACTAAACATCAG+TGG | - | chr3_1:74267442-74267461 | Msa0374740:intron | 35.0% | |
| ACTGCACTTCAGGTATTATA+TGG | - | chr3_1:74267565-74267584 | Msa0374740:intron | 35.0% | |
| TCATTCAGTAATGTCTCATG+GGG | + | chr3_1:74267648-74267667 | None:intergenic | 35.0% | |
| CTGAATGAATAACAGGCTAT+TGG | - | chr3_1:74267660-74267679 | Msa0374740:intron | 35.0% | |
| !! | CTAAGAACAGTTGATTTGTG+TGG | - | chr3_1:74267777-74267796 | Msa0374740:CDS | 35.0% |
| ! | AGATGATAGTGTGATTGCTT+TGG | - | chr3_1:74267975-74267994 | Msa0374740:intron | 35.0% |
| AGACAATGCCATGTATTCAT+TGG | - | chr3_1:74268053-74268072 | Msa0374740:intron | 35.0% | |
| AAAGGAGGAAATGATGAAGA+TGG | - | chr3_1:74268114-74268133 | Msa0374740:intron | 35.0% | |
| !! | GAAATGATGAAGATGGACTA+AGG | - | chr3_1:74268121-74268140 | Msa0374740:intron | 35.0% |
| GTTTATTAATGAGCAGGATG+AGG | + | chr3_1:74268327-74268346 | None:intergenic | 35.0% | |
| CATGTGGTTTATTAATGAGC+AGG | + | chr3_1:74268333-74268352 | None:intergenic | 35.0% | |
| TAATAAACCACATGACTTCG+AGG | - | chr3_1:74268339-74268358 | Msa0374740:intron | 35.0% | |
| TCACAAACATATCTACACCA+GGG | + | chr3_1:74268425-74268444 | None:intergenic | 35.0% | |
| AGTATGAGCACAACAACAAA+TGG | + | chr3_1:74268482-74268501 | None:intergenic | 35.0% | |
| TTTATTGGAAGACATGGACT+TGG | - | chr3_1:74268585-74268604 | Msa0374740:five_prime_UTR | 35.0% | |
| GACTTCTTCTAAACGTTGTT+TGG | - | chr3_1:74268607-74268626 | Msa0374740:five_prime_UTR | 35.0% | |
| !!! | TCTAAACGTTGTTTGGCTTT+TGG | - | chr3_1:74268614-74268633 | Msa0374740:five_prime_UTR | 35.0% |
| GGCATGCACATACACAAAAT+AGG | + | chr3_1:74265587-74265606 | None:intergenic | 40.0% | |
| GCAATTTGCAGAAAGCAACA+TGG | + | chr3_1:74265860-74265879 | None:intergenic | 40.0% | |
| ! | CTTATCCTTTTGTGACAGCT+AGG | - | chr3_1:74265971-74265990 | Msa0374740:intron | 40.0% |
| ACTTTCCTAGCTGTCACAAA+AGG | + | chr3_1:74265979-74265998 | None:intergenic | 40.0% | |
| TTGGTGAAGGGAAACTGAAA+TGG | - | chr3_1:74266008-74266027 | Msa0374740:intron | 40.0% | |
| TGAAGGGAAACTGAAATGGT+TGG | - | chr3_1:74266012-74266031 | Msa0374740:intron | 40.0% | |
| GAAGGGAAACTGAAATGGTT+GGG | - | chr3_1:74266013-74266032 | Msa0374740:intron | 40.0% | |
| GAGAATCTTATGATGGTTGC+TGG | - | chr3_1:74266075-74266094 | Msa0374740:intron | 40.0% | |
| AATCTTATGATGGTTGCTGG+TGG | - | chr3_1:74266078-74266097 | Msa0374740:intron | 40.0% | |
| ATCTGCATCAAAAGCTCAAC+AGG | + | chr3_1:74266156-74266175 | None:intergenic | 40.0% | |
| !! | GTCCTGTTGTATTTTTGCTG+TGG | - | chr3_1:74266828-74266847 | Msa0374740:intron | 40.0% |
| GATTTATTCCAGGAATGCAG+GGG | + | chr3_1:74266974-74266993 | None:intergenic | 40.0% | |
| CAGATTTATTCCAGGAATGC+AGG | + | chr3_1:74266976-74266995 | None:intergenic | 40.0% | |
| TGAGATGAGTGCAAAAGATG+GGG | + | chr3_1:74267110-74267129 | None:intergenic | 40.0% | |
| CTGAGATGAGTGCAAAAGAT+GGG | + | chr3_1:74267111-74267130 | None:intergenic | 40.0% | |
| !! | ATTGTGAAGTGCATTGACTG+TGG | - | chr3_1:74267173-74267192 | Msa0374740:intron | 40.0% |
| CAAACTTGGGAACAAGAGAT+AGG | + | chr3_1:74267258-74267277 | None:intergenic | 40.0% | |
| ! | TGAGCTTGAAACTTTTGCTG+AGG | + | chr3_1:74267381-74267400 | None:intergenic | 40.0% |
| TCACTGTATGCTATTGCTCA+TGG | - | chr3_1:74267409-74267428 | Msa0374740:intron | 40.0% | |
| AGCATTTAGTGACAATGCTC+TGG | - | chr3_1:74267471-74267490 | Msa0374740:intron | 40.0% | |
| ! | GTTTTCTACAGAAACCAGCA+AGG | + | chr3_1:74267501-74267520 | None:intergenic | 40.0% |
| CATTCAGTAATGTCTCATGG+GGG | + | chr3_1:74267647-74267666 | None:intergenic | 40.0% | |
| !! | TGTGACAAAGTTGGTGATGT+TGG | - | chr3_1:74267723-74267742 | Msa0374740:CDS | 40.0% |
| TGTGGCTGTGTCTATATAAC+AGG | - | chr3_1:74267795-74267814 | Msa0374740:CDS | 40.0% | |
| ATATGTTGTGCTCTGTAGCA+CGG | - | chr3_1:74267859-74267878 | Msa0374740:CDS | 40.0% | |
| AGTGTGATTGCTTTGGCAAA+CGG | - | chr3_1:74267982-74268001 | Msa0374740:intron | 40.0% | |
| GCTTTGTGCCAATGAATACA+TGG | + | chr3_1:74268064-74268083 | None:intergenic | 40.0% | |
| CACAAAGCAAAGTGAAGAAC+AGG | - | chr3_1:74268076-74268095 | Msa0374740:intron | 40.0% | |
| CAAAGTGAAGAACAGGATGT+GGG | - | chr3_1:74268083-74268102 | Msa0374740:intron | 40.0% | |
| AAAGTGAAGAACAGGATGTG+GGG | - | chr3_1:74268084-74268103 | Msa0374740:intron | 40.0% | |
| CACAAACATATCTACACCAG+GGG | + | chr3_1:74268424-74268443 | None:intergenic | 40.0% | |
| GTCACAAACATATCTACACC+AGG | + | chr3_1:74268426-74268445 | None:intergenic | 40.0% | |
| GGAAACTGAAATGGTTGGGA+AGG | - | chr3_1:74266017-74266036 | Msa0374740:intron | 45.0% | |
| TGAGAAAGGAGGGAACATGA+AGG | - | chr3_1:74266101-74266120 | Msa0374740:intron | 45.0% | |
| AAAGGAGGGAACATGAAGGT+TGG | - | chr3_1:74266105-74266124 | Msa0374740:intron | 45.0% | |
| !! | AGGTTGGTGTGATCACTGAA+TGG | - | chr3_1:74266121-74266140 | Msa0374740:intron | 45.0% |
| TGGTGTGATCACTGAATGGA+AGG | - | chr3_1:74266125-74266144 | Msa0374740:intron | 45.0% | |
| GATGCAGATTCTGTCTCTTG+TGG | - | chr3_1:74266167-74266186 | Msa0374740:CDS | 45.0% | |
| GTCTCTTGTGGATGATCAGA+CGG | - | chr3_1:74266179-74266198 | Msa0374740:CDS | 45.0% | |
| GGTTCTTCAATTCCTGATCC+TGG | - | chr3_1:74266399-74266418 | Msa0374740:CDS | 45.0% | |
| GCTTATGACTTAGCCCTGTT+TGG | + | chr3_1:74266765-74266784 | None:intergenic | 45.0% | |
| TCTTGGAGATCATAGCACAC+CGG | - | chr3_1:74267043-74267062 | Msa0374740:intron | 45.0% | |
| GAGATGAGTGCAAAAGATGG+GGG | + | chr3_1:74267109-74267128 | None:intergenic | 45.0% | |
| CCTGAGATGAGTGCAAAAGA+TGG | + | chr3_1:74267112-74267131 | None:intergenic | 45.0% | |
| ! | CCATCTTTTGCACTCATCTC+AGG | - | chr3_1:74267109-74267128 | Msa0374740:intron | 45.0% |
| GTTGTGGCTTATCTTGACGA+AGG | + | chr3_1:74267300-74267319 | None:intergenic | 45.0% | |
| TCGTCAAGATAAGCCACAAC+TGG | - | chr3_1:74267300-74267319 | Msa0374740:intron | 45.0% | |
| ACAACATTGTCGTCCAGTTG+TGG | + | chr3_1:74267316-74267335 | None:intergenic | 45.0% | |
| CAACTGGACGACAATGTTGT+TGG | - | chr3_1:74267316-74267335 | Msa0374740:intron | 45.0% | |
| TCTACAGAAACCAGCAAGGT+AGG | + | chr3_1:74267497-74267516 | None:intergenic | 45.0% | |
| AGCTTCTGATACTGCACTTC+AGG | - | chr3_1:74267555-74267574 | Msa0374740:intron | 45.0% | |
| CAGTTGCAGTCTTTGAACCT+TGG | - | chr3_1:74267696-74267715 | Msa0374740:CDS | 45.0% | |
| TGCAGTCTTTGAACCTTGGA+TGG | - | chr3_1:74267700-74267719 | Msa0374740:CDS | 45.0% | |
| CAACTTTGTCACACCATCCA+AGG | + | chr3_1:74267716-74267735 | None:intergenic | 45.0% | |
| CTTGGATGGTGTGACAAAGT+TGG | - | chr3_1:74267714-74267733 | Msa0374740:CDS | 45.0% | |
| GGAGTGATGAGTCTAGCATA+TGG | - | chr3_1:74267744-74267763 | Msa0374740:CDS | 45.0% | |
| ! | CTTGCAGAAGTACAGTCCAA+GGG | + | chr3_1:74268025-74268044 | None:intergenic | 45.0% |
| ! | TCTTGCAGAAGTACAGTCCA+AGG | + | chr3_1:74268026-74268045 | None:intergenic | 45.0% |
| GCAAAGTGAAGAACAGGATG+TGG | - | chr3_1:74268082-74268101 | Msa0374740:intron | 45.0% | |
| AGGCATTCACTCATCATGAG+TGG | - | chr3_1:74268234-74268253 | Msa0374740:intron | 45.0% | |
| ! | AGCACAAGCACAATGGACTT+CGG | + | chr3_1:74268274-74268293 | None:intergenic | 45.0% |
| ATATCTACACCAGGGGAAAG+GGG | + | chr3_1:74268417-74268436 | None:intergenic | 45.0% | |
| CATATCTACACCAGGGGAAA+GGG | + | chr3_1:74268418-74268437 | None:intergenic | 45.0% | |
| ACATATCTACACCAGGGGAA+AGG | + | chr3_1:74268419-74268438 | None:intergenic | 45.0% | |
| !! | AAATAAAAAACAAAAATAAA+GGG | + | chr3_1:74265801-74265820 | None:intergenic | 5.0% |
| !! | AAAATAAAAAACAAAAATAA+AGG | + | chr3_1:74265802-74265821 | None:intergenic | 5.0% |
| ! | ATGGTTGCTGGTGGTGAGAA+AGG | - | chr3_1:74266087-74266106 | Msa0374740:intron | 50.0% |
| ! | TTGCTGGTGGTGAGAAAGGA+GGG | - | chr3_1:74266091-74266110 | Msa0374740:intron | 50.0% |
| CTTCTGGTGTTTGTCGTGGT+TGG | - | chr3_1:74266211-74266230 | Msa0374740:CDS | 50.0% | |
| GAAAACATGGCACCAGGATC+AGG | + | chr3_1:74266414-74266433 | None:intergenic | 50.0% | |
| TGCTGAGGTCAAGAATCTGC+AGG | + | chr3_1:74267366-74267385 | None:intergenic | 50.0% | |
| AGGATGTGGGGATCTGTGAA+AGG | - | chr3_1:74268096-74268115 | Msa0374740:intron | 50.0% | |
| ATGTGGGGATCTGTGAAAGG+AGG | - | chr3_1:74268099-74268118 | Msa0374740:intron | 50.0% | |
| AAGGAGTGAGTGAAGTGCAC+TGG | + | chr3_1:74268161-74268180 | None:intergenic | 50.0% | |
| ACTCACTCCTTCAGCTGTTC+AGG | - | chr3_1:74268170-74268189 | Msa0374740:intron | 50.0% | |
| GAAGTCCATTGTGCTTGTGC+TGG | - | chr3_1:74268273-74268292 | Msa0374740:intron | 50.0% | |
| CATGACCAGCACAAGCACAA+TGG | + | chr3_1:74268281-74268300 | None:intergenic | 50.0% | |
| !! | GAGGGAAAGCGTTCATTGCA+CGG | + | chr3_1:74268308-74268327 | None:intergenic | 50.0% |
| !! | TTCGAGGAAGTGCCCTTTGA+AGG | - | chr3_1:74268355-74268374 | Msa0374740:intron | 50.0% |
| !! | TCGAGGAAGTGCCCTTTGAA+GGG | - | chr3_1:74268356-74268375 | Msa0374740:intron | 50.0% |
| ACTTCTCCGAGCCCTTCAAA+GGG | + | chr3_1:74268370-74268389 | None:intergenic | 50.0% | |
| ! | GTTGCTGGTGGTGAGAAAGG+AGG | - | chr3_1:74266090-74266109 | Msa0374740:intron | 55.0% |
| CAGACGGTGATTCGAGCTTC+TGG | - | chr3_1:74266195-74266214 | Msa0374740:CDS | 55.0% | |
| CGAGCTTCTGGTGTTTGTCG+TGG | - | chr3_1:74266207-74266226 | Msa0374740:CDS | 55.0% | |
| ! | GTTGGTTTCCCCTGCATTCC+TGG | - | chr3_1:74266963-74266982 | Msa0374740:intron | 55.0% |
| AATGCTCTGGCCTACCTTGC+TGG | - | chr3_1:74267484-74267503 | Msa0374740:intron | 55.0% | |
| TGTGCTCTGTAGCACGGACA+CGG | - | chr3_1:74267865-74267884 | Msa0374740:CDS | 55.0% | |
| AGTACAGTCCAAGGGACCTC+AGG | + | chr3_1:74268017-74268036 | None:intergenic | 55.0% | |
| CACTCCTTCAGCTGTTCAGG+CGG | - | chr3_1:74268173-74268192 | Msa0374740:intron | 55.0% | |
| CAAACCGCCTGAACAGCTGA+AGG | + | chr3_1:74268180-74268199 | None:intergenic | 55.0% | |
| CTGCTCTCCACACATGCTCA+GGG | - | chr3_1:74268211-74268230 | Msa0374740:intron | 55.0% | |
| AATGCCTCCCTGAGCATGTG+TGG | + | chr3_1:74268221-74268240 | None:intergenic | 55.0% | |
| GGCACTTCCTCGAAGTCATG+TGG | + | chr3_1:74268349-74268368 | None:intergenic | 55.0% | |
| ! | GAAGTGCCCTTTGAAGGGCT+CGG | - | chr3_1:74268361-74268380 | Msa0374740:intron | 55.0% |
| CACTTCTCCGAGCCCTTCAA+AGG | + | chr3_1:74268371-74268390 | None:intergenic | 55.0% | |
| CAAACGGATGCCCTCACCTG+AGG | - | chr3_1:74267998-74268017 | Msa0374740:intron | 60.0% | |
| GTCCAAGGGACCTCAGGTGA+GGG | + | chr3_1:74268011-74268030 | None:intergenic | 60.0% | |
| AGTCCAAGGGACCTCAGGTG+AGG | + | chr3_1:74268012-74268031 | None:intergenic | 60.0% | |
| CCTGAGCATGTGTGGAGAGC+AGG | + | chr3_1:74268213-74268232 | None:intergenic | 60.0% | |
| CCTGCTCTCCACACATGCTC+AGG | - | chr3_1:74268210-74268229 | Msa0374740:intron | 60.0% | |
| CTCTCCACACATGCTCAGGG+AGG | - | chr3_1:74268214-74268233 | Msa0374740:intron | 60.0% | |
| TACACCAGGGGAAAGGGGAG+GGG | + | chr3_1:74268412-74268431 | None:intergenic | 60.0% | |
| CTACACCAGGGGAAAGGGGA+GGG | + | chr3_1:74268413-74268432 | None:intergenic | 60.0% | |
| TCTACACCAGGGGAAAGGGG+AGG | + | chr3_1:74268414-74268433 | None:intergenic | 60.0% | |
| TGCCCTCACCTGAGGTCCCT+TGG | - | chr3_1:74268006-74268025 | Msa0374740:intron | 65.0% | |
| CAGGGGAAAGGGGAGGGGAG+GGG | + | chr3_1:74268407-74268426 | None:intergenic | 70.0% | |
| CCAGGGGAAAGGGGAGGGGA+GGG | + | chr3_1:74268408-74268427 | None:intergenic | 70.0% | |
| ACCAGGGGAAAGGGGAGGGG+AGG | + | chr3_1:74268409-74268428 | None:intergenic | 70.0% | |
| CCCTCCCCTCCCCTTTCCCC+TGG | - | chr3_1:74268405-74268424 | Msa0374740:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 74265306 | 74268645 | 74265306 | ID=Msa0374740;Name=Msa0374740 |
| chr3_1 | mRNA | 74265306 | 74268645 | 74265306 | ID=Msa0374740-mRNA-1;Parent=Msa0374740;Name=Msa0374740-mRNA-1;_AED=0.01;_eAED=0.01;_QI=132|1|1|1|0.75|0.6|5|304|368 |
| chr3_1 | exon | 74265306 | 74265974 | 74265306 | ID=Msa0374740-mRNA-1:exon:17130;Parent=Msa0374740-mRNA-1 |
| chr3_1 | exon | 74266135 | 74266276 | 74266135 | ID=Msa0374740-mRNA-1:exon:17129;Parent=Msa0374740-mRNA-1 |
| chr3_1 | exon | 74266375 | 74266723 | 74266375 | ID=Msa0374740-mRNA-1:exon:17128;Parent=Msa0374740-mRNA-1 |
| chr3_1 | exon | 74267674 | 74267962 | 74267674 | ID=Msa0374740-mRNA-1:exon:17127;Parent=Msa0374740-mRNA-1 |
| chr3_1 | exon | 74268552 | 74268645 | 74268552 | ID=Msa0374740-mRNA-1:exon:17126;Parent=Msa0374740-mRNA-1 |
| chr3_1 | five_prime_UTR | 74268552 | 74268645 | 74268552 | ID=Msa0374740-mRNA-1:five_prime_utr;Parent=Msa0374740-mRNA-1 |
| chr3_1 | five_prime_UTR | 74267925 | 74267962 | 74267925 | ID=Msa0374740-mRNA-1:five_prime_utr;Parent=Msa0374740-mRNA-1 |
| chr3_1 | CDS | 74267674 | 74267924 | 74267674 | ID=Msa0374740-mRNA-1:cds;Parent=Msa0374740-mRNA-1 |
| chr3_1 | CDS | 74266375 | 74266723 | 74266375 | ID=Msa0374740-mRNA-1:cds;Parent=Msa0374740-mRNA-1 |
| chr3_1 | CDS | 74266135 | 74266276 | 74266135 | ID=Msa0374740-mRNA-1:cds;Parent=Msa0374740-mRNA-1 |
| chr3_1 | CDS | 74265610 | 74265974 | 74265610 | ID=Msa0374740-mRNA-1:cds;Parent=Msa0374740-mRNA-1 |
| chr3_1 | three_prime_UTR | 74265306 | 74265609 | 74265306 | ID=Msa0374740-mRNA-1:three_prime_utr;Parent=Msa0374740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
