Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375600 | AFK45596.1 | 54.167 | 336 | 145 | 6 | 10 | 340 | 19 | 350 | 2.84e-111 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375600 | sp|Q8RXF8|MIRO1_ARATH | 48.538 | 342 | 157 | 8 | 10 | 340 | 20 | 353 | 4.96e-98 | 306 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375600 | I3SZA4 | 54.167 | 336 | 145 | 6 | 10 | 340 | 19 | 350 | 1.36e-111 | 341 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0375450 | Msa0375600 | 0.875114 | 3.977618e-68 | -8.615850e-47 |
| Msa0375600 | Msa0391360 | 0.815625 | 8.401363e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375600 | MtrunA17_Chr1g0191811 | 54.167 | 336 | 145 | 6 | 10 | 340 | 19 | 350 | 2.81e-113 | 342 |
| Msa0375600 | MtrunA17_Chr5g0413741 | 47.619 | 336 | 149 | 6 | 10 | 340 | 64 | 377 | 7.18e-96 | 298 |
| Msa0375600 | MtrunA17_Chr5g0417151 | 52.174 | 276 | 127 | 4 | 67 | 340 | 40 | 312 | 6.19e-88 | 277 |
| Msa0375600 | MtrunA17_Chr7g0259771 | 42.730 | 337 | 183 | 7 | 10 | 340 | 11 | 343 | 4.84e-82 | 261 |
| Msa0375600 | MtrunA17_Chr4g0073381 | 44.898 | 294 | 152 | 6 | 52 | 340 | 3 | 291 | 3.76e-71 | 231 |
| Msa0375600 | MtrunA17_Chr1g0185591 | 38.192 | 343 | 198 | 8 | 6 | 340 | 11 | 347 | 9.01e-71 | 232 |
| Msa0375600 | MtrunA17_Chr4g0073061 | 39.316 | 351 | 183 | 8 | 16 | 340 | 29 | 375 | 8.15e-62 | 207 |
| Msa0375600 | MtrunA17_Chr5g0413461 | 44.262 | 122 | 66 | 2 | 221 | 340 | 6 | 127 | 4.56e-25 | 105 |
| Msa0375600 | MtrunA17_Chr8g0338031 | 29.932 | 294 | 169 | 11 | 10 | 285 | 36 | 310 | 1.51e-24 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0375600 | AT5G27540.1 | 48.538 | 342 | 157 | 8 | 10 | 340 | 20 | 353 | 5.05e-99 | 306 |
| Msa0375600 | AT5G27540.2 | 48.538 | 342 | 157 | 8 | 10 | 340 | 20 | 353 | 5.05e-99 | 306 |
| Msa0375600 | AT3G63150.1 | 44.807 | 337 | 176 | 6 | 10 | 340 | 17 | 349 | 6.92e-92 | 287 |
| Msa0375600 | AT3G05310.1 | 39.823 | 339 | 191 | 7 | 10 | 340 | 17 | 350 | 2.76e-74 | 241 |
| Msa0375600 | AT3G05310.3 | 37.864 | 206 | 123 | 3 | 139 | 340 | 1 | 205 | 3.40e-40 | 148 |
| Msa0375600 | AT3G05310.2 | 37.864 | 206 | 123 | 3 | 139 | 340 | 1 | 205 | 7.69e-40 | 147 |
Find 81 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTCTTTCAAGTGTTTC+AGG | 0.129872 | 3_1:-75368858 | None:intergenic |
| AAAAGATATCACCCGAATTT+TGG | 0.144462 | 3_1:+75370190 | Msa0375600:CDS |
| GCTTGTCGTGTTCAGCAATT+AGG | 0.247839 | 3_1:+75369674 | Msa0375600:CDS |
| TCCTTTCGAATTCCAAAATT+CGG | 0.256306 | 3_1:-75370202 | None:intergenic |
| AGAAACGAAAATGAGTGATA+TGG | 0.278844 | 3_1:-75368014 | None:intergenic |
| CAGAAAGTAATCTACCTTTC+CGG | 0.279820 | 3_1:-75370701 | None:intergenic |
| ACCTGTCGATTGCGAAGTTC+AGG | 0.286668 | 3_1:-75368894 | None:intergenic |
| TGAGGCGACGTCAGCAATTA+TGG | 0.289500 | 3_1:+75369627 | Msa0375600:CDS |
| ATTAAATTCGGCACAAAATC+AGG | 0.310665 | 3_1:-75368202 | None:intergenic |
| TTACAACCGACCACAATAAC+TGG | 0.322500 | 3_1:-75369565 | None:intergenic |
| AACAACTCCTTTGTTTGATA+AGG | 0.348414 | 3_1:+75369839 | Msa0375600:CDS |
| CCTTTCGAATTCCAAAATTC+GGG | 0.358420 | 3_1:-75370201 | None:intergenic |
| AGAAAGTAATCTACCTTTCC+GGG | 0.373646 | 3_1:-75370700 | None:intergenic |
| AAGTTTCAATTTCGTGGAAC+TGG | 0.378799 | 3_1:-75369651 | None:intergenic |
| ACAAGCAAGTTTCAATTTCG+TGG | 0.393363 | 3_1:-75369657 | None:intergenic |
| TCGAAAGGAATTACTTTGTC+CGG | 0.396628 | 3_1:+75370216 | Msa0375600:CDS |
| CGTTTCTTCTTTCTGCTGCA+TGG | 0.398236 | 3_1:+75368030 | Msa0375600:exon |
| ATCGCCGGCAACAACGATAC+AGG | 0.405872 | 3_1:-75368071 | None:intergenic |
| ATCGTTGTTGCCGGCGATGA+AGG | 0.427852 | 3_1:+75368076 | Msa0375600:CDS |
| TTATCAAACAAAGGAGTTGT+TGG | 0.428138 | 3_1:-75369837 | None:intergenic |
| TGATCAGGAGTTTGTCTTGG+AGG | 0.444623 | 3_1:-75370351 | None:intergenic |
| GAAACGAAAATGAGTGATAT+GGG | 0.445386 | 3_1:-75368013 | None:intergenic |
| CATGCACGTTTCATAAAAGA+AGG | 0.446920 | 3_1:+75370252 | Msa0375600:CDS |
| GAGGCCTCAATGATTAAATT+CGG | 0.447013 | 3_1:-75368214 | None:intergenic |
| TCTCAAAAGAAAACCTGATC+AGG | 0.447396 | 3_1:-75370366 | None:intergenic |
| CTCGGAATATATCACTGTAT+TGG | 0.450491 | 3_1:+75370158 | Msa0375600:CDS |
| ACAAAATTTCTAAAGACCTA+TGG | 0.458345 | 3_1:+75368796 | Msa0375600:CDS |
| TCCAAGACAAACTCCTGATC+AGG | 0.459090 | 3_1:+75370353 | Msa0375600:CDS |
| TTTAAAACCTCGATGTCAAC+GGG | 0.459364 | 3_1:+75369872 | Msa0375600:CDS |
| TGCATGAATAAATAGAAATC+CGG | 0.460394 | 3_1:-75370235 | None:intergenic |
| ACCTGATCAGGAGTTTGTCT+TGG | 0.463328 | 3_1:-75370354 | None:intergenic |
| GTCAATCCGTGAGTATTTGC+CGG | 0.464020 | 3_1:-75368134 | None:intergenic |
| CAAACCTGTATCGTTGTTGC+CGG | 0.474045 | 3_1:+75368067 | Msa0375600:CDS |
| CCCTGAACTTCGCAATCGAC+AGG | 0.483590 | 3_1:+75368893 | Msa0375600:CDS |
| CTCATCAGTGCTGCCTTCAC+CGG | 0.496737 | 3_1:+75368115 | Msa0375600:CDS |
| AATGATTACTAAATTCATCA+TGG | 0.501213 | 3_1:-75369947 | None:intergenic |
| TGGTCGGTTGTAAGCTTGAC+CGG | 0.501890 | 3_1:+75369575 | Msa0375600:CDS |
| GCTCAACTGTGCAGTGAAGT+AGG | 0.511099 | 3_1:+75367965 | Msa0375600:five_prime_UTR |
| TTAGCGCTTTGCCGTCGTCT+CGG | 0.517787 | 3_1:-75369923 | None:intergenic |
| AAAACAAGTCATCAAGTCCA+TGG | 0.520280 | 3_1:-75370670 | None:intergenic |
| ATGCAGTGTGGAATGTGCTC+TGG | 0.534960 | 3_1:+75370283 | Msa0375600:CDS |
| GTTGCCGGCGATGAAGGTAC+TGG | 0.535231 | 3_1:+75368082 | Msa0375600:CDS |
| CACGGATTGACGCTCGCGTA+CGG | 0.536119 | 3_1:+75368146 | Msa0375600:CDS |
| CTTTAAAACCTCGATGTCAA+CGG | 0.544297 | 3_1:+75369871 | Msa0375600:CDS |
| CCGTGAGTATTTGCCGGTGA+AGG | 0.547725 | 3_1:-75368128 | None:intergenic |
| AAGTAGGCTGCAAGACAAGT+AGG | 0.549864 | 3_1:+75367981 | Msa0375600:five_prime_UTR |
| CCTGTCGATTGCGAAGTTCA+GGG | 0.551690 | 3_1:-75368893 | None:intergenic |
| CAATTACGTCAGCGCGCCAT+AGG | 0.555947 | 3_1:-75368812 | None:intergenic |
| AAGTATTCTTCTATGCTCAA+AGG | 0.556268 | 3_1:+75369802 | Msa0375600:CDS |
| AGTATTCTTCTATGCTCAAA+GGG | 0.557673 | 3_1:+75369803 | Msa0375600:CDS |
| ATATATTCCGAGTGTGGCAT+AGG | 0.559084 | 3_1:-75370147 | None:intergenic |
| TGTGCCGAATTTAATCATTG+AGG | 0.561625 | 3_1:+75368210 | Msa0375600:CDS |
| GATGTCAACGGGCTCTGAAG+AGG | 0.565007 | 3_1:+75369883 | Msa0375600:CDS |
| AGTGAGACTCCCAGTTATTG+TGG | 0.565058 | 3_1:+75369555 | Msa0375600:CDS |
| AAACAAGTCATCAAGTCCAT+GGG | 0.566028 | 3_1:-75370669 | None:intergenic |
| GAATATATCACTGTATTGGA+AGG | 0.567442 | 3_1:+75370162 | Msa0375600:CDS |
| CGTTTAGCAACAAAAGAAAG+AGG | 0.568925 | 3_1:+75367943 | Msa0375600:five_prime_UTR |
| TGAATTTAGTAATCATTACC+AGG | 0.569538 | 3_1:+75369953 | Msa0375600:CDS |
| GGCGTGTCACCATGCTACAC+AGG | 0.576386 | 3_1:+75368170 | Msa0375600:CDS |
| CGATTCGCCTATGCCACACT+CGG | 0.580314 | 3_1:+75370140 | Msa0375600:CDS |
| AGACTCCCAGTTATTGTGGT+CGG | 0.582685 | 3_1:+75369559 | Msa0375600:CDS |
| TGTGTCTCCTTATCAAACAA+AGG | 0.586680 | 3_1:-75369846 | None:intergenic |
| GGATTGACGCTCGCGTACGG+CGG | 0.593491 | 3_1:+75368149 | Msa0375600:CDS |
| TTCAGAGCCCGTTGACATCG+AGG | 0.598766 | 3_1:-75369879 | None:intergenic |
| TACAACCGACCACAATAACT+GGG | 0.620360 | 3_1:-75369564 | None:intergenic |
| CCTTCACCGGCAAATACTCA+CGG | 0.620951 | 3_1:+75368128 | Msa0375600:CDS |
| CTTGCCAGTACCTTCATCGC+CGG | 0.622843 | 3_1:-75368086 | None:intergenic |
| ATCCACTGCGACCGAGACGA+CGG | 0.623878 | 3_1:+75369912 | Msa0375600:CDS |
| GATAAGATGCTAAGTCCCCA+TGG | 0.628259 | 3_1:+75370653 | Msa0375600:CDS |
| AAAATCGAAACGACTCAACA+AGG | 0.630560 | 3_1:+75367917 | Msa0375600:five_prime_UTR |
| ATACGTATCCCTGTGTAGCA+TGG | 0.631528 | 3_1:-75368179 | None:intergenic |
| ATGCACGTTTCATAAAAGAA+GGG | 0.633763 | 3_1:+75370253 | Msa0375600:CDS |
| TGCCGTCGTCTCGGTCGCAG+TGG | 0.641345 | 3_1:-75369914 | None:intergenic |
| ACAGTGATATATTCCGAGTG+TGG | 0.649325 | 3_1:-75370153 | None:intergenic |
| TACGCATGTGAGCATTGATG+AGG | 0.651788 | 3_1:+75369609 | Msa0375600:CDS |
| GCGTGTCACCATGCTACACA+GGG | 0.662270 | 3_1:+75368171 | Msa0375600:CDS |
| GCTGATCAAATGCATATGTG+AGG | 0.679443 | 3_1:-75368836 | None:intergenic |
| TTCAGCAATTAGGAATAACA+AGG | 0.686962 | 3_1:+75369684 | Msa0375600:CDS |
| GAAAGTAATCTACCTTTCCG+GGG | 0.693841 | 3_1:-75370699 | None:intergenic |
| AACAAGTCATCAAGTCCATG+GGG | 0.701960 | 3_1:-75370668 | None:intergenic |
| AAGGGCGTAAAGATGCAGTG+TGG | 0.752059 | 3_1:+75370271 | Msa0375600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAAAATTACTTTGAAG+AGG | - | chr3_1:75368236-75368255 | None:intergenic | 15.0% |
| !! | TAGTAAAAGAAATATATTCA+AGG | - | chr3_1:75369231-75369250 | None:intergenic | 15.0% |
| !!! | AATTTCTTTTCTATTCATAT+TGG | + | chr3_1:75370456-75370475 | Msa0375600:intron | 15.0% |
| !!! | TTGAAAGAATAAGTAGTTTT+TGG | + | chr3_1:75368868-75368887 | Msa0375600:CDS | 20.0% |
| !! | AAAATTCAAAAGAAAATGAG+AGG | - | chr3_1:75368925-75368944 | None:intergenic | 20.0% |
| !!! | CTTTCAAAATCTTATTTCAA+AGG | + | chr3_1:75369728-75369747 | Msa0375600:intron | 20.0% |
| !! | TAATTAATATTCCTTGTTGA+AGG | + | chr3_1:75369773-75369792 | Msa0375600:intron | 20.0% |
| !! | AATGATTACTAAATTCATCA+TGG | - | chr3_1:75369950-75369969 | None:intergenic | 20.0% |
| !!! | TACAATTTTGACAGTTAATA+CGG | - | chr3_1:75369997-75370016 | None:intergenic | 20.0% |
| !!! | TGTTAATATCATTTTATGCT+AGG | + | chr3_1:75370058-75370077 | Msa0375600:intron | 20.0% |
| !! | TGAAAAGGTAAAATTATTCA+AGG | - | chr3_1:75370582-75370601 | None:intergenic | 20.0% |
| !! | TTTACTCAATAGTTGTTGTT+TGG | + | chr3_1:75368723-75368742 | Msa0375600:intron | 25.0% |
| !!! | TTACTCAATAGTTGTTGTTT+GGG | + | chr3_1:75368724-75368743 | Msa0375600:intron | 25.0% |
| !! | ACAAAATTTCTAAAGACCTA+TGG | + | chr3_1:75368796-75368815 | Msa0375600:CDS | 25.0% |
| !!! | TTTTAGAGAATGAATGTGTT+AGG | + | chr3_1:75369091-75369110 | Msa0375600:intron | 25.0% |
| !! | GAATTCTTCTTTTCTCAATT+TGG | - | chr3_1:75369209-75369228 | None:intergenic | 25.0% |
| !! | TCTTTTACTATCAACTGAAT+AGG | + | chr3_1:75369241-75369260 | Msa0375600:intron | 25.0% |
| ! | TGATTAACTAATTCTCCTAA+AGG | + | chr3_1:75369364-75369383 | Msa0375600:intron | 25.0% |
| ! | GATTAACTAATTCTCCTAAA+GGG | + | chr3_1:75369365-75369384 | Msa0375600:intron | 25.0% |
| ! | TAGTCCTATTTATAAACCAT+AGG | + | chr3_1:75369392-75369411 | Msa0375600:intron | 25.0% |
| ! | AGTCCTATTTATAAACCATA+GGG | + | chr3_1:75369393-75369412 | Msa0375600:intron | 25.0% |
| ! | TAACCCTATGGTTTATAAAT+AGG | - | chr3_1:75369399-75369418 | None:intergenic | 25.0% |
| ! | TGGAGTTAAGAAGTTAATTA+GGG | - | chr3_1:75369459-75369478 | None:intergenic | 25.0% |
| ! | TTGGAGTTAAGAAGTTAATT+AGG | - | chr3_1:75369460-75369479 | None:intergenic | 25.0% |
| !! | TCAAAATCTTATTTCAAAGG+TGG | + | chr3_1:75369731-75369750 | Msa0375600:intron | 25.0% |
| ! | TGAATTTAGTAATCATTACC+AGG | + | chr3_1:75369953-75369972 | Msa0375600:CDS | 25.0% |
| ! | TGCATGAATAAATAGAAATC+CGG | - | chr3_1:75370238-75370257 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTGAGATGAATTG+TGG | + | chr3_1:75370376-75370395 | Msa0375600:intron | 25.0% |
| !! | TCAACTTTTGATAAATTTGC+TGG | + | chr3_1:75370533-75370552 | Msa0375600:CDS | 25.0% |
| ! | CTCTTTCTTTTGTTGCTAAA+CGG | - | chr3_1:75367945-75367964 | None:intergenic | 30.0% |
| GAAACGAAAATGAGTGATAT+GGG | - | chr3_1:75368016-75368035 | None:intergenic | 30.0% | |
| AGAAACGAAAATGAGTGATA+TGG | - | chr3_1:75368017-75368036 | None:intergenic | 30.0% | |
| ATTAAATTCGGCACAAAATC+AGG | - | chr3_1:75368205-75368224 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | + | chr3_1:75368562-75368581 | Msa0375600:intron | 30.0% | |
| !! | ACACAATGTTGGTAACAATA+GGG | - | chr3_1:75368588-75368607 | None:intergenic | 30.0% |
| !! | AACACAATGTTGGTAACAAT+AGG | - | chr3_1:75368589-75368608 | None:intergenic | 30.0% |
| AGACTCATAAAACACAATGT+TGG | - | chr3_1:75368599-75368618 | None:intergenic | 30.0% | |
| GTAAAAAACCAGTAGACTAA+TGG | + | chr3_1:75368622-75368641 | Msa0375600:intron | 30.0% | |
| AACTATTGAGTAAATGCACA+AGG | - | chr3_1:75368717-75368736 | None:intergenic | 30.0% | |
| ! | CTTATTCTTTCAAGTGTTTC+AGG | - | chr3_1:75368861-75368880 | None:intergenic | 30.0% |
| TACTATTCTGCAAGAATGTA+AGG | + | chr3_1:75368982-75369001 | Msa0375600:intron | 30.0% | |
| CTGTACAATTACCAAAAGAA+AGG | - | chr3_1:75369119-75369138 | None:intergenic | 30.0% | |
| AATTCATTTCTGTCCAGTTT+CGG | - | chr3_1:75369147-75369166 | None:intergenic | 30.0% | |
| ATTGAAAGAGAAGACACAAA+AGG | + | chr3_1:75369264-75369283 | Msa0375600:intron | 30.0% | |
| GGAGTTAAGAAGTTAATTAG+GGG | - | chr3_1:75369458-75369477 | None:intergenic | 30.0% | |
| TTCAGCAATTAGGAATAACA+AGG | + | chr3_1:75369684-75369703 | Msa0375600:CDS | 30.0% | |
| AAGTATTCTTCTATGCTCAA+AGG | + | chr3_1:75369802-75369821 | Msa0375600:CDS | 30.0% | |
| AGTATTCTTCTATGCTCAAA+GGG | + | chr3_1:75369803-75369822 | Msa0375600:CDS | 30.0% | |
| TTATCAAACAAAGGAGTTGT+TGG | - | chr3_1:75369840-75369859 | None:intergenic | 30.0% | |
| ! | AACAACTCCTTTGTTTGATA+AGG | + | chr3_1:75369839-75369858 | Msa0375600:CDS | 30.0% |
| !! | TTGTAGCTTGTTTATAGTAC+AGG | + | chr3_1:75370012-75370031 | Msa0375600:intron | 30.0% |
| GAATATATCACTGTATTGGA+AGG | + | chr3_1:75370162-75370181 | Msa0375600:CDS | 30.0% | |
| ! | AAAAGATATCACCCGAATTT+TGG | + | chr3_1:75370190-75370209 | Msa0375600:CDS | 30.0% |
| TCCTTTCGAATTCCAAAATT+CGG | - | chr3_1:75370205-75370224 | None:intergenic | 30.0% | |
| ATGCACGTTTCATAAAAGAA+GGG | + | chr3_1:75370253-75370272 | Msa0375600:CDS | 30.0% | |
| AAAATCGAAACGACTCAACA+AGG | + | chr3_1:75367917-75367936 | Msa0375600:five_prime_UTR | 35.0% | |
| CGTTTAGCAACAAAAGAAAG+AGG | + | chr3_1:75367943-75367962 | Msa0375600:five_prime_UTR | 35.0% | |
| TGTGCCGAATTTAATCATTG+AGG | + | chr3_1:75368210-75368229 | Msa0375600:CDS | 35.0% | |
| GAGGCCTCAATGATTAAATT+CGG | - | chr3_1:75368217-75368236 | None:intergenic | 35.0% | |
| GAGTAAGCAATAAAGCGAAA+TGG | - | chr3_1:75368291-75368310 | None:intergenic | 35.0% | |
| CAAGCACTTATCATGATAAG+TGG | - | chr3_1:75368528-75368547 | None:intergenic | 35.0% | |
| ! | ACAATGTACCATTAGTCTAC+TGG | - | chr3_1:75368633-75368652 | None:intergenic | 35.0% |
| ! | GTACATTGTACCTTGATTTG+TGG | + | chr3_1:75368644-75368663 | Msa0375600:intron | 35.0% |
| !! | CTTATGCTCTAAAGAGGAAT+AGG | - | chr3_1:75368682-75368701 | None:intergenic | 35.0% |
| !! | CTATTCCTCTTTAGAGCATA+AGG | + | chr3_1:75368680-75368699 | Msa0375600:intron | 35.0% |
| !! | AAAAGCCTTATGCTCTAAAG+AGG | - | chr3_1:75368688-75368707 | None:intergenic | 35.0% |
| ATTGAGTAAATGCACAAGGA+TGG | - | chr3_1:75368713-75368732 | None:intergenic | 35.0% | |
| GCTTGTGCGTATTAATAGAA+AGG | - | chr3_1:75369010-75369029 | None:intergenic | 35.0% | |
| ! | TGTGTTAGGAACCTTTCTTT+TGG | + | chr3_1:75369105-75369124 | Msa0375600:intron | 35.0% |
| ATTCATTTCTGTCCAGTTTC+GGG | - | chr3_1:75369146-75369165 | None:intergenic | 35.0% | |
| TAACTAATTCTCCTAAAGGG+AGG | + | chr3_1:75369368-75369387 | Msa0375600:intron | 35.0% | |
| !! | TTCACTTGCTATTAACCCTA+TGG | - | chr3_1:75369411-75369430 | None:intergenic | 35.0% |
| TGTATGTCAAGCTTTCTGTT+GGG | - | chr3_1:75369510-75369529 | None:intergenic | 35.0% | |
| ATGTATGTCAAGCTTTCTGT+TGG | - | chr3_1:75369511-75369530 | None:intergenic | 35.0% | |
| CATATCTGAATTCCATGAAC+AGG | + | chr3_1:75369528-75369547 | Msa0375600:intron | 35.0% | |
| AAGTTTCAATTTCGTGGAAC+TGG | - | chr3_1:75369654-75369673 | None:intergenic | 35.0% | |
| ACAAGCAAGTTTCAATTTCG+TGG | - | chr3_1:75369660-75369679 | None:intergenic | 35.0% | |
| TGTGTCTCCTTATCAAACAA+AGG | - | chr3_1:75369849-75369868 | None:intergenic | 35.0% | |
| !! | CTTTAAAACCTCGATGTCAA+CGG | + | chr3_1:75369871-75369890 | Msa0375600:CDS | 35.0% |
| ! | TTTAAAACCTCGATGTCAAC+GGG | + | chr3_1:75369872-75369891 | Msa0375600:CDS | 35.0% |
| CAGAGAGAAAAACTAAAACC+TGG | - | chr3_1:75369974-75369993 | None:intergenic | 35.0% | |
| CTCGGAATATATCACTGTAT+TGG | + | chr3_1:75370158-75370177 | Msa0375600:CDS | 35.0% | |
| ! | ATTCGGGTGATATCTTTTTC+AGG | - | chr3_1:75370188-75370207 | None:intergenic | 35.0% |
| CCTTTCGAATTCCAAAATTC+GGG | - | chr3_1:75370204-75370223 | None:intergenic | 35.0% | |
| TCGAAAGGAATTACTTTGTC+CGG | + | chr3_1:75370216-75370235 | Msa0375600:CDS | 35.0% | |
| CATGCACGTTTCATAAAAGA+AGG | + | chr3_1:75370252-75370271 | Msa0375600:CDS | 35.0% | |
| TCTCAAAAGAAAACCTGATC+AGG | - | chr3_1:75370369-75370388 | None:intergenic | 35.0% | |
| GCACATTTGCAAGTATGAAA+AGG | - | chr3_1:75370597-75370616 | None:intergenic | 35.0% | |
| AAACAAGTCATCAAGTCCAT+GGG | - | chr3_1:75370672-75370691 | None:intergenic | 35.0% | |
| AAAACAAGTCATCAAGTCCA+TGG | - | chr3_1:75370673-75370692 | None:intergenic | 35.0% | |
| CAAAGAAGAGCCACAAATCA+AGG | - | chr3_1:75368657-75368676 | None:intergenic | 40.0% | |
| GCTGATCAAATGCATATGTG+AGG | - | chr3_1:75368839-75368858 | None:intergenic | 40.0% | |
| TTGTACAGAATTCCCGAAAC+TGG | + | chr3_1:75369131-75369150 | Msa0375600:intron | 40.0% | |
| !! | CAAAAGGTATCTTGCACTCA+AGG | + | chr3_1:75369280-75369299 | Msa0375600:intron | 40.0% |
| ACTAGAGAACACTCTAGTGA+GGG | - | chr3_1:75369327-75369346 | None:intergenic | 40.0% | |
| AACTAGAGAACACTCTAGTG+AGG | - | chr3_1:75369328-75369347 | None:intergenic | 40.0% | |
| AATAGGACTAACCTCCCTTT+AGG | - | chr3_1:75369382-75369401 | None:intergenic | 40.0% | |
| !! | TACAGGGGAGTTTGTTAGAT+TGG | - | chr3_1:75369479-75369498 | None:intergenic | 40.0% |
| TGTTGGGACTTAGAATACAG+GGG | - | chr3_1:75369494-75369513 | None:intergenic | 40.0% | |
| CTGTTGGGACTTAGAATACA+GGG | - | chr3_1:75369495-75369514 | None:intergenic | 40.0% | |
| TCTGTTGGGACTTAGAATAC+AGG | - | chr3_1:75369496-75369515 | None:intergenic | 40.0% | |
| ATCTGAATTCCATGAACAGG+CGG | + | chr3_1:75369531-75369550 | Msa0375600:intron | 40.0% | |
| TACAACCGACCACAATAACT+GGG | - | chr3_1:75369567-75369586 | None:intergenic | 40.0% | |
| TTACAACCGACCACAATAAC+TGG | - | chr3_1:75369568-75369587 | None:intergenic | 40.0% | |
| ATATATTCCGAGTGTGGCAT+AGG | - | chr3_1:75370150-75370169 | None:intergenic | 40.0% | |
| ACAGTGATATATTCCGAGTG+TGG | - | chr3_1:75370156-75370175 | None:intergenic | 40.0% | |
| !!! | CCCGAATTTTGGAATTCGAA+AGG | + | chr3_1:75370201-75370220 | Msa0375600:CDS | 40.0% |
| AACAAGTCATCAAGTCCATG+GGG | - | chr3_1:75370671-75370690 | None:intergenic | 40.0% | |
| AAGTAGGCTGCAAGACAAGT+AGG | + | chr3_1:75367981-75368000 | Msa0375600:five_prime_UTR | 45.0% | |
| CGTTTCTTCTTTCTGCTGCA+TGG | + | chr3_1:75368030-75368049 | Msa0375600:exon | 45.0% | |
| CAAACCTGTATCGTTGTTGC+CGG | + | chr3_1:75368067-75368086 | Msa0375600:CDS | 45.0% | |
| GTCAATCCGTGAGTATTTGC+CGG | - | chr3_1:75368137-75368156 | None:intergenic | 45.0% | |
| ATACGTATCCCTGTGTAGCA+TGG | - | chr3_1:75368182-75368201 | None:intergenic | 45.0% | |
| TGGTAACAATAGGGCCTGTT+TGG | - | chr3_1:75368579-75368598 | None:intergenic | 45.0% | |
| CTAGAGAACACTCTAGTGAG+GGG | - | chr3_1:75369326-75369345 | None:intergenic | 45.0% | |
| TCTGAATTCCATGAACAGGC+GGG | + | chr3_1:75369532-75369551 | Msa0375600:intron | 45.0% | |
| AGTGAGACTCCCAGTTATTG+TGG | + | chr3_1:75369555-75369574 | Msa0375600:CDS | 45.0% | |
| AGACTCCCAGTTATTGTGGT+CGG | + | chr3_1:75369559-75369578 | Msa0375600:CDS | 45.0% | |
| ! | CATGCGTATTTTCATCTCGC+CGG | - | chr3_1:75369597-75369616 | None:intergenic | 45.0% |
| !! | TACGCATGTGAGCATTGATG+AGG | + | chr3_1:75369609-75369628 | Msa0375600:CDS | 45.0% |
| GCTTGTCGTGTTCAGCAATT+AGG | + | chr3_1:75369674-75369693 | Msa0375600:CDS | 45.0% | |
| TACTTCGCAGACCTTCAACA+AGG | - | chr3_1:75369787-75369806 | None:intergenic | 45.0% | |
| TGATCAGGAGTTTGTCTTGG+AGG | - | chr3_1:75370354-75370373 | None:intergenic | 45.0% | |
| TCCAAGACAAACTCCTGATC+AGG | + | chr3_1:75370353-75370372 | Msa0375600:CDS | 45.0% | |
| ACCTGATCAGGAGTTTGTCT+TGG | - | chr3_1:75370357-75370376 | None:intergenic | 45.0% | |
| CCTGGCGGAAGGAAAATATA+TGG | - | chr3_1:75370634-75370653 | None:intergenic | 45.0% | |
| ! | CCATATATTTTCCTTCCGCC+AGG | + | chr3_1:75370631-75370650 | Msa0375600:intron | 45.0% |
| GACTTAGCATCTTATCCTGG+CGG | - | chr3_1:75370649-75370668 | None:intergenic | 45.0% | |
| GATAAGATGCTAAGTCCCCA+TGG | + | chr3_1:75370653-75370672 | Msa0375600:CDS | 45.0% | |
| !!! | TGACTTGTTTTCTACTGCCC+CGG | + | chr3_1:75370682-75370701 | Msa0375600:CDS | 45.0% |
| GCTCAACTGTGCAGTGAAGT+AGG | + | chr3_1:75367965-75367984 | Msa0375600:five_prime_UTR | 50.0% | |
| CCTTCACCGGCAAATACTCA+CGG | + | chr3_1:75368128-75368147 | Msa0375600:CDS | 50.0% | |
| GGCACTGTTACAATTCGTGC+TGG | + | chr3_1:75368745-75368764 | Msa0375600:intron | 50.0% | |
| ! | CCTGTCGATTGCGAAGTTCA+GGG | - | chr3_1:75368896-75368915 | None:intergenic | 50.0% |
| ! | ACCTGTCGATTGCGAAGTTC+AGG | - | chr3_1:75368897-75368916 | None:intergenic | 50.0% |
| TGGTCGGTTGTAAGCTTGAC+CGG | + | chr3_1:75369575-75369594 | Msa0375600:CDS | 50.0% | |
| TGAGGCGACGTCAGCAATTA+TGG | + | chr3_1:75369627-75369646 | Msa0375600:CDS | 50.0% | |
| ! | AAGGGCGTAAAGATGCAGTG+TGG | + | chr3_1:75370271-75370290 | Msa0375600:CDS | 50.0% |
| ATGCAGTGTGGAATGTGCTC+TGG | + | chr3_1:75370283-75370302 | Msa0375600:CDS | 50.0% | |
| TAGCATCTTATCCTGGCGGA+AGG | - | chr3_1:75370645-75370664 | None:intergenic | 50.0% | |
| GGGGACTTAGCATCTTATCC+TGG | - | chr3_1:75370652-75370671 | None:intergenic | 50.0% | |
| ! | TGTTTTCTACTGCCCCGGAA+AGG | + | chr3_1:75370687-75370706 | Msa0375600:CDS | 50.0% |
| ATCGCCGGCAACAACGATAC+AGG | - | chr3_1:75368074-75368093 | None:intergenic | 55.0% | |
| ATCGTTGTTGCCGGCGATGA+AGG | + | chr3_1:75368076-75368095 | Msa0375600:CDS | 55.0% | |
| CTTGCCAGTACCTTCATCGC+CGG | - | chr3_1:75368089-75368108 | None:intergenic | 55.0% | |
| CTCATCAGTGCTGCCTTCAC+CGG | + | chr3_1:75368115-75368134 | Msa0375600:CDS | 55.0% | |
| CCGTGAGTATTTGCCGGTGA+AGG | - | chr3_1:75368131-75368150 | None:intergenic | 55.0% | |
| GCGTGTCACCATGCTACACA+GGG | + | chr3_1:75368171-75368190 | Msa0375600:CDS | 55.0% | |
| CAATTACGTCAGCGCGCCAT+AGG | - | chr3_1:75368815-75368834 | None:intergenic | 55.0% | |
| CCCTGAACTTCGCAATCGAC+AGG | + | chr3_1:75368893-75368912 | Msa0375600:CDS | 55.0% | |
| !! | TGAGGGGAGAGTGCTTCGAT+GGG | - | chr3_1:75369310-75369329 | None:intergenic | 55.0% |
| TTCAGAGCCCGTTGACATCG+AGG | - | chr3_1:75369882-75369901 | None:intergenic | 55.0% | |
| !! | GATGTCAACGGGCTCTGAAG+AGG | + | chr3_1:75369883-75369902 | Msa0375600:CDS | 55.0% |
| TTAGCGCTTTGCCGTCGTCT+CGG | - | chr3_1:75369926-75369945 | None:intergenic | 55.0% | |
| CGATTCGCCTATGCCACACT+CGG | + | chr3_1:75370140-75370159 | Msa0375600:CDS | 55.0% | |
| ! | GTTGCCGGCGATGAAGGTAC+TGG | + | chr3_1:75368082-75368101 | Msa0375600:CDS | 60.0% |
| ! | CACGGATTGACGCTCGCGTA+CGG | + | chr3_1:75368146-75368165 | Msa0375600:CDS | 60.0% |
| GGCGTGTCACCATGCTACAC+AGG | + | chr3_1:75368170-75368189 | Msa0375600:CDS | 60.0% | |
| !! | GAGGGGAGAGTGCTTCGATG+GGG | - | chr3_1:75369309-75369328 | None:intergenic | 60.0% |
| !! | GTGAGGGGAGAGTGCTTCGA+TGG | - | chr3_1:75369311-75369330 | None:intergenic | 60.0% |
| GTCTCACTCCCGCCTGTTCA+TGG | - | chr3_1:75369543-75369562 | None:intergenic | 60.0% | |
| ATCCACTGCGACCGAGACGA+CGG | + | chr3_1:75369912-75369931 | Msa0375600:CDS | 60.0% | |
| GGATTGACGCTCGCGTACGG+CGG | + | chr3_1:75368149-75368168 | Msa0375600:CDS | 65.0% | |
| TGCCGTCGTCTCGGTCGCAG+TGG | - | chr3_1:75369917-75369936 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 75367895 | 75370712 | 75367895 | ID=Msa0375600;Name=Msa0375600 |
| chr3_1 | mRNA | 75367895 | 75370712 | 75367895 | ID=Msa0375600-mRNA-1;Parent=Msa0375600;Name=Msa0375600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=154|1|0.71|1|1|1|7|0|341 |
| chr3_1 | exon | 75367895 | 75368242 | 75367895 | ID=Msa0375600-mRNA-1:exon:17602;Parent=Msa0375600-mRNA-1 |
| chr3_1 | exon | 75368791 | 75368914 | 75368791 | ID=Msa0375600-mRNA-1:exon:17603;Parent=Msa0375600-mRNA-1 |
| chr3_1 | exon | 75369550 | 75369705 | 75369550 | ID=Msa0375600-mRNA-1:exon:17604;Parent=Msa0375600-mRNA-1 |
| chr3_1 | exon | 75369795 | 75369974 | 75369795 | ID=Msa0375600-mRNA-1:exon:17605;Parent=Msa0375600-mRNA-1 |
| chr3_1 | exon | 75370129 | 75370374 | 75370129 | ID=Msa0375600-mRNA-1:exon:17606;Parent=Msa0375600-mRNA-1 |
| chr3_1 | exon | 75370494 | 75370559 | 75370494 | ID=Msa0375600-mRNA-1:exon:17607;Parent=Msa0375600-mRNA-1 |
| chr3_1 | exon | 75370653 | 75370712 | 75370653 | ID=Msa0375600-mRNA-1:exon:17608;Parent=Msa0375600-mRNA-1 |
| chr3_1 | five_prime_UTR | 75367895 | 75368048 | 75367895 | ID=Msa0375600-mRNA-1:five_prime_utr;Parent=Msa0375600-mRNA-1 |
| chr3_1 | CDS | 75368049 | 75368242 | 75368049 | ID=Msa0375600-mRNA-1:cds;Parent=Msa0375600-mRNA-1 |
| chr3_1 | CDS | 75368791 | 75368914 | 75368791 | ID=Msa0375600-mRNA-1:cds;Parent=Msa0375600-mRNA-1 |
| chr3_1 | CDS | 75369550 | 75369705 | 75369550 | ID=Msa0375600-mRNA-1:cds;Parent=Msa0375600-mRNA-1 |
| chr3_1 | CDS | 75369795 | 75369974 | 75369795 | ID=Msa0375600-mRNA-1:cds;Parent=Msa0375600-mRNA-1 |
| chr3_1 | CDS | 75370129 | 75370374 | 75370129 | ID=Msa0375600-mRNA-1:cds;Parent=Msa0375600-mRNA-1 |
| chr3_1 | CDS | 75370494 | 75370559 | 75370494 | ID=Msa0375600-mRNA-1:cds;Parent=Msa0375600-mRNA-1 |
| chr3_1 | CDS | 75370653 | 75370712 | 75370653 | ID=Msa0375600-mRNA-1:cds;Parent=Msa0375600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
