AlfalfaGEDB | Msa0375450

M. sativa cultivar zhongmu-4 / Msa0375450

KEGG: K07870
GO: GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0006810 GO:0006839 GO:0006915 GO:0006928 GO:0006996 GO:0007005 GO:0007006 GO:0007017 GO:0007018 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008219 GO:0008637 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0010154 GO:0010970 GO:0012501 GO:0016020 GO:0016021 GO:0016043 GO:0016049 GO:0019725 GO:0019867 GO:0022414 GO:0023052 GO:0030154 GO:0030705 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0032989 GO:0034643 GO:0035794 GO:0040007 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0044706 GO:0046902 GO:0046907 GO:0047497 GO:0048316 GO:0048468 GO:0048588 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048868 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051646 GO:0051649 GO:0051654 GO:0051656 GO:0051704 GO:0051716 GO:0060560 GO:0061024 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0072384 GO:0090559 GO:0097190 GO:0097345 GO:0098573 GO:0098588 GO:0098805 GO:0099111 GO:1902108 GO:1902110 GO:1902686 GO:1905710
PFAM: PF00071.25

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375450	AFK45596.1	54.464	336	144	6	10	340	19	350	3.73e-112	343

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375450	sp\|Q8RXF8\|MIRO1_ARATH	48.830	342	156	8	10	340	20	353	1.49e-99	310

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375450	I3SZA4	54.464	336	144	6	10	340	19	350	1.78e-112	343

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0375450	Msa0375460	0.805036	1.620407e-49	-8.615850e-47
Msa0375450	Msa0375470	0.866492	2.741599e-65	-8.615850e-47
Msa0375450	Msa0375600	0.875114	3.977618e-68	-8.615850e-47
Msa0375450	Msa0391340	0.827713	1.344077e-54	-8.615850e-47
Msa0375450	Msa0391360	0.942650	4.934550e-102	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375450	MtrunA17_Chr1g0191811	54.464	336	144	6	10	340	19	350	4.31e-114	344
Msa0375450	MtrunA17_Chr5g0413741	48.214	336	147	6	10	340	64	377	4.26e-98	304
Msa0375450	MtrunA17_Chr5g0417151	52.536	276	126	4	67	340	40	312	1.37e-88	279
Msa0375450	MtrunA17_Chr7g0259771	42.730	337	183	7	10	340	11	343	4.69e-82	261
Msa0375450	MtrunA17_Chr1g0185591	38.484	343	197	8	6	340	11	347	1.37e-71	234
Msa0375450	MtrunA17_Chr4g0073381	44.898	294	152	6	52	340	3	291	8.30e-71	231
Msa0375450	MtrunA17_Chr4g0073061	39.316	351	183	8	16	340	29	375	1.46e-61	207
Msa0375450	MtrunA17_Chr5g0413461	45.082	122	65	2	221	340	6	127	1.18e-25	106
Msa0375450	MtrunA17_Chr8g0338031	29.932	294	169	11	10	285	36	310	7.83e-25	104

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0375450	AT5G27540.1	48.830	342	156	8	10	340	20	353	1.52e-100	310
Msa0375450	AT5G27540.2	48.830	342	156	8	10	340	20	353	1.52e-100	310
Msa0375450	AT3G63150.1	45.104	337	175	6	10	340	17	349	8.44e-93	290
Msa0375450	AT3G05310.1	40.118	339	190	7	10	340	17	350	1.13e-75	245
Msa0375450	AT3G05310.3	38.350	206	122	3	139	340	1	205	1.80e-41	151
Msa0375450	AT3G05310.2	38.350	206	122	3	139	340	1	205	3.38e-41	150

Find 81 sgRNAs with CRISPR-Local

Find 166 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CTTATTCTTTCAAGTGTTTC+AGG	0.129872	3_1:-75212261	None:intergenic
AAAAGATATCACCCGAATTT+TGG	0.144462	3_1:+75213593	Msa0375450:CDS
GCTTGTCGTGTTCAGCAATT+AGG	0.247839	3_1:+75213077	Msa0375450:CDS
TCCTTTCGAATTCCAAAATT+CGG	0.256306	3_1:-75213605	None:intergenic
AGAAACGAAAATGAGTGATA+TGG	0.278844	3_1:-75211417	None:intergenic
CAGAAAGTAATCTACCTTTC+CGG	0.279820	3_1:-75214110	None:intergenic
ACCTGTCGATTGCGAAGTTC+AGG	0.286668	3_1:-75212297	None:intergenic
TGAGGCGACGTCAGCAATTA+TGG	0.289500	3_1:+75213030	Msa0375450:CDS
ATTAAATTCGGCACAAAATC+AGG	0.310665	3_1:-75211605	None:intergenic
TTACAACCGACCACAATAAC+TGG	0.322500	3_1:-75212968	None:intergenic
AACAACTCCTTTGTTTGATA+AGG	0.348414	3_1:+75213242	Msa0375450:CDS
CCTTTCGAATTCCAAAATTC+GGG	0.358420	3_1:-75213604	None:intergenic
AGAAAGTAATCTACCTTTCC+GGG	0.373646	3_1:-75214109	None:intergenic
AAGTTTCAATTTCGTGGAAC+TGG	0.378799	3_1:-75213054	None:intergenic
ACAAGCAAGTTTCAATTTCG+TGG	0.393363	3_1:-75213060	None:intergenic
TCGAAAGGAATTACTTTGTC+CGG	0.396628	3_1:+75213619	Msa0375450:CDS
CGTTTCTTCTTTCTGCTGCA+TGG	0.398236	3_1:+75211433	Msa0375450:exon
ATCGCCGGCAACAACGATAC+AGG	0.405872	3_1:-75211474	None:intergenic
ATCGTTGTTGCCGGCGATGA+AGG	0.427852	3_1:+75211479	Msa0375450:CDS
TTATCAAACAAAGGAGTTGT+TGG	0.428138	3_1:-75213240	None:intergenic
TGATCAGGAGTTTGTCTTGG+AGG	0.444623	3_1:-75213754	None:intergenic
GAAACGAAAATGAGTGATAT+GGG	0.445386	3_1:-75211416	None:intergenic
CATGCACGTTTCATAAAAGA+AGG	0.446920	3_1:+75213655	Msa0375450:CDS
GAGGCCTCAATGATTAAATT+CGG	0.447013	3_1:-75211617	None:intergenic
TCTCAAAAGAAAACCTGATC+AGG	0.447396	3_1:-75213769	None:intergenic
CTCGGAATATATCACTGTAT+TGG	0.450491	3_1:+75213561	Msa0375450:CDS
ACAAAATTTCTAAAGACCTA+TGG	0.458345	3_1:+75212199	Msa0375450:CDS
TCCAAGACAAACTCCTGATC+AGG	0.459090	3_1:+75213756	Msa0375450:CDS
TTTAAAACCTCGATGTCAAC+GGG	0.459364	3_1:+75213275	Msa0375450:CDS
TGCATGAATAAATAGAAATC+CGG	0.460394	3_1:-75213638	None:intergenic
ACCTGATCAGGAGTTTGTCT+TGG	0.463328	3_1:-75213757	None:intergenic
GTCAATCCGTGAGTATTTGC+CGG	0.464020	3_1:-75211537	None:intergenic
CAAACCTGTATCGTTGTTGC+CGG	0.474045	3_1:+75211470	Msa0375450:CDS
CCCTGAACTTCGCAATCGAC+AGG	0.483590	3_1:+75212296	Msa0375450:CDS
CTCATCAGTGCTGCCTTCAC+CGG	0.496737	3_1:+75211518	Msa0375450:CDS
AATGATTACTAAATTCATCA+TGG	0.501213	3_1:-75213350	None:intergenic
TGGTCGGTTGTAAGCTTGAC+CGG	0.501890	3_1:+75212978	Msa0375450:CDS
GCTCAACTGTGCAGTGAAGT+AGG	0.511099	3_1:+75211368	Msa0375450:five_prime_UTR
AAAACAAGTCATCAAGTCCA+TGG	0.520280	3_1:-75214079	None:intergenic
ATGCAGTGTGGAATGTGCTC+TGG	0.534960	3_1:+75213686	Msa0375450:CDS
GTTGCCGGCGATGAAGGTAC+TGG	0.535231	3_1:+75211485	Msa0375450:CDS
CACGGATTGACGCTCGCGTA+CGG	0.536119	3_1:+75211549	Msa0375450:CDS
CTTTAAAACCTCGATGTCAA+CGG	0.544297	3_1:+75213274	Msa0375450:CDS
CCGTGAGTATTTGCCGGTGA+AGG	0.547725	3_1:-75211531	None:intergenic
AAGTAGGCTGCAAGACAAGT+AGG	0.549864	3_1:+75211384	Msa0375450:five_prime_UTR
CCTGTCGATTGCGAAGTTCA+GGG	0.551690	3_1:-75212296	None:intergenic
GAGCATAGAAGAATACTTCG+CGG	0.553810	3_1:-75213200	None:intergenic
CAATTACGTCAGCGCGCCAT+AGG	0.555947	3_1:-75212215	None:intergenic
AAGTATTCTTCTATGCTCAA+AGG	0.556268	3_1:+75213205	Msa0375450:CDS
AGTATTCTTCTATGCTCAAA+GGG	0.557673	3_1:+75213206	Msa0375450:CDS
ATATATTCCGAGTGTGGCAT+AGG	0.559084	3_1:-75213550	None:intergenic
TGTGCCGAATTTAATCATTG+AGG	0.561625	3_1:+75211613	Msa0375450:CDS
GATGTCAACGGGCTCTGAAG+AGG	0.565007	3_1:+75213286	Msa0375450:CDS
AGTGAGACTCCCAGTTATTG+TGG	0.565058	3_1:+75212958	Msa0375450:CDS
AAACAAGTCATCAAGTCCAT+GGG	0.566028	3_1:-75214078	None:intergenic
GAATATATCACTGTATTGGA+AGG	0.567442	3_1:+75213565	Msa0375450:CDS
CGTTTAGCAACAAAAGAAAG+AGG	0.568925	3_1:+75211346	Msa0375450:five_prime_UTR
TGAATTTAGTAATCATTACC+AGG	0.569538	3_1:+75213356	Msa0375450:CDS
GGCGTGTCACCATGCTACAC+AGG	0.576386	3_1:+75211573	Msa0375450:CDS
CGATTCGCCTATGCCACACT+CGG	0.580314	3_1:+75213543	Msa0375450:CDS
AGACTCCCAGTTATTGTGGT+CGG	0.582685	3_1:+75212962	Msa0375450:CDS
TGTGTCTCCTTATCAAACAA+AGG	0.586680	3_1:-75213249	None:intergenic
GGATTGACGCTCGCGTACGG+CGG	0.593491	3_1:+75211552	Msa0375450:CDS
TTCAGAGCCCGTTGACATCG+AGG	0.598766	3_1:-75213282	None:intergenic
TACAACCGACCACAATAACT+GGG	0.620360	3_1:-75212967	None:intergenic
CCTTCACCGGCAAATACTCA+CGG	0.620951	3_1:+75211531	Msa0375450:CDS
CTTGCCAGTACCTTCATCGC+CGG	0.622843	3_1:-75211489	None:intergenic
GATAAGATGCTAAGTCCCCA+TGG	0.628259	3_1:+75214062	Msa0375450:CDS
AAAATCGAAACGACTCAACA+AGG	0.630560	3_1:+75211320	Msa0375450:five_prime_UTR
ATACGTATCCCTGTGTAGCA+TGG	0.631528	3_1:-75211582	None:intergenic
ATGCACGTTTCATAAAAGAA+GGG	0.633763	3_1:+75213656	Msa0375450:CDS
ACAGTGATATATTCCGAGTG+TGG	0.649325	3_1:-75213556	None:intergenic
TACGCATGTGAGCATTGATG+AGG	0.651788	3_1:+75213012	Msa0375450:CDS
TGCCGTCGTCTTGATCGCAG+TGG	0.652519	3_1:-75213317	None:intergenic
ATCCACTGCGATCAAGACGA+CGG	0.657411	3_1:+75213315	Msa0375450:CDS
GCGTGTCACCATGCTACACA+GGG	0.662270	3_1:+75211574	Msa0375450:CDS
GCTGATCAAATGCATATGTG+AGG	0.679443	3_1:-75212239	None:intergenic
TTCAGCAATTAGGAATAACA+AGG	0.686962	3_1:+75213087	Msa0375450:CDS
GAAAGTAATCTACCTTTCCG+GGG	0.693841	3_1:-75214108	None:intergenic
AACAAGTCATCAAGTCCATG+GGG	0.701960	3_1:-75214077	None:intergenic
AAGGGCGTAAAGATGCAGTG+TGG	0.752059	3_1:+75213674	Msa0375450:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTAAAAAAATTACTTTGAAG+AGG	-	chr3_1:75211639-75211658	None:intergenic	15.0%
!!	TAGTAAAAGAAATATATTCA+AGG	-	chr3_1:75212634-75212653	None:intergenic	15.0%
!!!	AATTTCTTTTCTATTCATAT+TGG	+	chr3_1:75213866-75213885	Msa0375450:intron	15.0%
!!!	TTGAAAGAATAAGTAGTTTT+TGG	+	chr3_1:75212271-75212290	Msa0375450:CDS	20.0%
!!	AAAATTCAAAAGAAAATGAG+AGG	-	chr3_1:75212328-75212347	None:intergenic	20.0%
!!!	CTTTCAAAATCTTATTTCAA+AGG	+	chr3_1:75213131-75213150	Msa0375450:intron	20.0%
!!	TAATTAATATTCCTTGTTGA+AGG	+	chr3_1:75213176-75213195	Msa0375450:intron	20.0%
!!	AATGATTACTAAATTCATCA+TGG	-	chr3_1:75213353-75213372	None:intergenic	20.0%
!!!	TGTTAATATCATTTTATGCT+AGG	+	chr3_1:75213461-75213480	Msa0375450:intron	20.0%
!!	TGAAAAGGTAAAATTATTCA+AGG	-	chr3_1:75213992-75214011	None:intergenic	20.0%
!!	TTTACTCAATAGTTGTTGTT+TGG	+	chr3_1:75212126-75212145	Msa0375450:intron	25.0%
!!!	TTACTCAATAGTTGTTGTTT+GGG	+	chr3_1:75212127-75212146	Msa0375450:intron	25.0%
!!	ACAAAATTTCTAAAGACCTA+TGG	+	chr3_1:75212199-75212218	Msa0375450:CDS	25.0%
!!!	TTTTAGAGAATGAATGTGTT+AGG	+	chr3_1:75212494-75212513	Msa0375450:intron	25.0%
!!	GAATTCTTCTTTTCTCAATT+TGG	-	chr3_1:75212612-75212631	None:intergenic	25.0%
!!	TCTTTTACTATCAACTGAAT+AGG	+	chr3_1:75212644-75212663	Msa0375450:intron	25.0%
!	TAGTCCTATTTATAAACCAT+AGG	+	chr3_1:75212795-75212814	Msa0375450:intron	25.0%
!	AGTCCTATTTATAAACCATA+GGG	+	chr3_1:75212796-75212815	Msa0375450:intron	25.0%
!	TAACCCTATGGTTTATAAAT+AGG	-	chr3_1:75212802-75212821	None:intergenic	25.0%
!	TGGAGTTAAGAAGTTAATTA+GGG	-	chr3_1:75212862-75212881	None:intergenic	25.0%
!	TTGGAGTTAAGAAGTTAATT+AGG	-	chr3_1:75212863-75212882	None:intergenic	25.0%
!!	TCAAAATCTTATTTCAAAGG+TGG	+	chr3_1:75213134-75213153	Msa0375450:intron	25.0%
!	TGAATTTAGTAATCATTACC+AGG	+	chr3_1:75213356-75213375	Msa0375450:CDS	25.0%
!!!	CACAATTTTGACAGTTAATA+CGG	-	chr3_1:75213400-75213419	None:intergenic	25.0%
!	TGCATGAATAAATAGAAATC+CGG	-	chr3_1:75213641-75213660	None:intergenic	25.0%
!!!	TTTTCTTTTGAGATGAATTG+TGG	+	chr3_1:75213779-75213798	Msa0375450:intron	25.0%
!!	TCAACTTTTGATAAATTTGC+TGG	+	chr3_1:75213943-75213962	Msa0375450:CDS	25.0%
!!!	TTTTGATAAATTTGCTGGTT+CGG	+	chr3_1:75213948-75213967	Msa0375450:CDS	25.0%
!	CTCTTTCTTTTGTTGCTAAA+CGG	-	chr3_1:75211348-75211367	None:intergenic	30.0%
	GAAACGAAAATGAGTGATAT+GGG	-	chr3_1:75211419-75211438	None:intergenic	30.0%
	AGAAACGAAAATGAGTGATA+TGG	-	chr3_1:75211420-75211439	None:intergenic	30.0%
	ATTAAATTCGGCACAAAATC+AGG	-	chr3_1:75211608-75211627	None:intergenic	30.0%
	AATAAGCTGTTTATCCAAAC+AGG	+	chr3_1:75211965-75211984	Msa0375450:intron	30.0%
!!	ACACAATGTTGGTAACAATA+GGG	-	chr3_1:75211991-75212010	None:intergenic	30.0%
!!	AACACAATGTTGGTAACAAT+AGG	-	chr3_1:75211992-75212011	None:intergenic	30.0%
	AGACTCATAAAACACAATGT+TGG	-	chr3_1:75212002-75212021	None:intergenic	30.0%
	GTAAAAAACCAGTAGACTAA+TGG	+	chr3_1:75212025-75212044	Msa0375450:intron	30.0%
	AACTATTGAGTAAATGCACA+AGG	-	chr3_1:75212120-75212139	None:intergenic	30.0%
!	CTTATTCTTTCAAGTGTTTC+AGG	-	chr3_1:75212264-75212283	None:intergenic	30.0%
	TACTATTCTGCAAGAATGTA+AGG	+	chr3_1:75212385-75212404	Msa0375450:intron	30.0%
	CTGTACAATTACCAAAAGAA+AGG	-	chr3_1:75212522-75212541	None:intergenic	30.0%
	AATTCATTTCTGTCCAGTTT+CGG	-	chr3_1:75212550-75212569	None:intergenic	30.0%
	ATTGAAAGAGAAGACACAAA+AGG	+	chr3_1:75212667-75212686	Msa0375450:intron	30.0%
	TGATTAACTAATCCTCCTAA+AGG	+	chr3_1:75212767-75212786	Msa0375450:intron	30.0%
	GATTAACTAATCCTCCTAAA+GGG	+	chr3_1:75212768-75212787	Msa0375450:intron	30.0%
	GGAGTTAAGAAGTTAATTAG+GGG	-	chr3_1:75212861-75212880	None:intergenic	30.0%
	TTCAGCAATTAGGAATAACA+AGG	+	chr3_1:75213087-75213106	Msa0375450:CDS	30.0%
	AAGTATTCTTCTATGCTCAA+AGG	+	chr3_1:75213205-75213224	Msa0375450:CDS	30.0%
	AGTATTCTTCTATGCTCAAA+GGG	+	chr3_1:75213206-75213225	Msa0375450:CDS	30.0%
	TTATCAAACAAAGGAGTTGT+TGG	-	chr3_1:75213243-75213262	None:intergenic	30.0%
!	AACAACTCCTTTGTTTGATA+AGG	+	chr3_1:75213242-75213261	Msa0375450:CDS	30.0%
	CGTATTAACTGTCAAAATTG+TGG	+	chr3_1:75213398-75213417	Msa0375450:intron	30.0%
	GAATATATCACTGTATTGGA+AGG	+	chr3_1:75213565-75213584	Msa0375450:CDS	30.0%
!	AAAAGATATCACCCGAATTT+TGG	+	chr3_1:75213593-75213612	Msa0375450:CDS	30.0%
	TCCTTTCGAATTCCAAAATT+CGG	-	chr3_1:75213608-75213627	None:intergenic	30.0%
	ATGCACGTTTCATAAAAGAA+GGG	+	chr3_1:75213656-75213675	Msa0375450:CDS	30.0%
	AAAATCGAAACGACTCAACA+AGG	+	chr3_1:75211320-75211339	Msa0375450:five_prime_UTR	35.0%
	CGTTTAGCAACAAAAGAAAG+AGG	+	chr3_1:75211346-75211365	Msa0375450:five_prime_UTR	35.0%
	TGTGCCGAATTTAATCATTG+AGG	+	chr3_1:75211613-75211632	Msa0375450:CDS	35.0%
	GAGGCCTCAATGATTAAATT+CGG	-	chr3_1:75211620-75211639	None:intergenic	35.0%
	GAGTAAGCAATAAAGCGAAA+TGG	-	chr3_1:75211694-75211713	None:intergenic	35.0%
	CAAGCACTTATCATGATAAG+TGG	-	chr3_1:75211931-75211950	None:intergenic	35.0%
!	ACAATGTACCATTAGTCTAC+TGG	-	chr3_1:75212036-75212055	None:intergenic	35.0%
!	GTACATTGTACCTTGATTTG+TGG	+	chr3_1:75212047-75212066	Msa0375450:intron	35.0%
!!	CTTATGCTCTAAAGAGGAAT+AGG	-	chr3_1:75212085-75212104	None:intergenic	35.0%
!!	CTATTCCTCTTTAGAGCATA+AGG	+	chr3_1:75212083-75212102	Msa0375450:intron	35.0%
!!	AAAAGCCTTATGCTCTAAAG+AGG	-	chr3_1:75212091-75212110	None:intergenic	35.0%
	ATTGAGTAAATGCACAAGGA+TGG	-	chr3_1:75212116-75212135	None:intergenic	35.0%
	GCTTGTGCGTATTAATAGAA+AGG	-	chr3_1:75212413-75212432	None:intergenic	35.0%
!	TGTGTTAGGAACCTTTCTTT+TGG	+	chr3_1:75212508-75212527	Msa0375450:intron	35.0%
	ATTCATTTCTGTCCAGTTTC+GGG	-	chr3_1:75212549-75212568	None:intergenic	35.0%
!!	TTCACTTGCTATTAACCCTA+TGG	-	chr3_1:75212814-75212833	None:intergenic	35.0%
	TGTATGTCAAGCTTTCTGTT+GGG	-	chr3_1:75212913-75212932	None:intergenic	35.0%
	ATGTATGTCAAGCTTTCTGT+TGG	-	chr3_1:75212914-75212933	None:intergenic	35.0%
	CATATCTGAATTCCATGAAC+AGG	+	chr3_1:75212931-75212950	Msa0375450:intron	35.0%
	AAGTTTCAATTTCGTGGAAC+TGG	-	chr3_1:75213057-75213076	None:intergenic	35.0%
	ACAAGCAAGTTTCAATTTCG+TGG	-	chr3_1:75213063-75213082	None:intergenic	35.0%
	TGTGTCTCCTTATCAAACAA+AGG	-	chr3_1:75213252-75213271	None:intergenic	35.0%
!!	CTTTAAAACCTCGATGTCAA+CGG	+	chr3_1:75213274-75213293	Msa0375450:CDS	35.0%
!	TTTAAAACCTCGATGTCAAC+GGG	+	chr3_1:75213275-75213294	Msa0375450:CDS	35.0%
	CAGAGAGAAAAACTAAAACC+TGG	-	chr3_1:75213377-75213396	None:intergenic	35.0%
	CTCGGAATATATCACTGTAT+TGG	+	chr3_1:75213561-75213580	Msa0375450:CDS	35.0%
!	ATTCGGGTGATATCTTTTTC+AGG	-	chr3_1:75213591-75213610	None:intergenic	35.0%
	CCTTTCGAATTCCAAAATTC+GGG	-	chr3_1:75213607-75213626	None:intergenic	35.0%
	TCGAAAGGAATTACTTTGTC+CGG	+	chr3_1:75213619-75213638	Msa0375450:CDS	35.0%
	CATGCACGTTTCATAAAAGA+AGG	+	chr3_1:75213655-75213674	Msa0375450:CDS	35.0%
	TCTCAAAAGAAAACCTGATC+AGG	-	chr3_1:75213772-75213791	None:intergenic	35.0%
	TGCACATTGCAAGTATGAAA+AGG	-	chr3_1:75214007-75214026	None:intergenic	35.0%
	AAACAAGTCATCAAGTCCAT+GGG	-	chr3_1:75214081-75214100	None:intergenic	35.0%
	AAAACAAGTCATCAAGTCCA+TGG	-	chr3_1:75214082-75214101	None:intergenic	35.0%
	CAAAGAAGAGCCACAAATCA+AGG	-	chr3_1:75212060-75212079	None:intergenic	40.0%
	GCTGATCAAATGCATATGTG+AGG	-	chr3_1:75212242-75212261	None:intergenic	40.0%
	TTGTACAGAATTCCCGAAAC+TGG	+	chr3_1:75212534-75212553	Msa0375450:intron	40.0%
!!	CAAAAGGTATCTTGCACTCA+AGG	+	chr3_1:75212683-75212702	Msa0375450:intron	40.0%
	ACTAGAGAACACTCTAGTGA+GGG	-	chr3_1:75212730-75212749	None:intergenic	40.0%
	AACTAGAGAACACTCTAGTG+AGG	-	chr3_1:75212731-75212750	None:intergenic	40.0%
	TAACTAATCCTCCTAAAGGG+AGG	+	chr3_1:75212771-75212790	Msa0375450:intron	40.0%
	AATAGGACTAACCTCCCTTT+AGG	-	chr3_1:75212785-75212804	None:intergenic	40.0%
!!	TACAGGGGAGTTTGTTAGAT+TGG	-	chr3_1:75212882-75212901	None:intergenic	40.0%
	TGTTGGGACTTAGAATACAG+GGG	-	chr3_1:75212897-75212916	None:intergenic	40.0%
	CTGTTGGGACTTAGAATACA+GGG	-	chr3_1:75212898-75212917	None:intergenic	40.0%
	TCTGTTGGGACTTAGAATAC+AGG	-	chr3_1:75212899-75212918	None:intergenic	40.0%
	ATCTGAATTCCATGAACAGG+CGG	+	chr3_1:75212934-75212953	Msa0375450:intron	40.0%
	TACAACCGACCACAATAACT+GGG	-	chr3_1:75212970-75212989	None:intergenic	40.0%
	TTACAACCGACCACAATAAC+TGG	-	chr3_1:75212971-75212990	None:intergenic	40.0%
	GAGCATAGAAGAATACTTCG+CGG	-	chr3_1:75213203-75213222	None:intergenic	40.0%
	ATATATTCCGAGTGTGGCAT+AGG	-	chr3_1:75213553-75213572	None:intergenic	40.0%
	ACAGTGATATATTCCGAGTG+TGG	-	chr3_1:75213559-75213578	None:intergenic	40.0%
!!!	CCCGAATTTTGGAATTCGAA+AGG	+	chr3_1:75213604-75213623	Msa0375450:CDS	40.0%
	AACAAGTCATCAAGTCCATG+GGG	-	chr3_1:75214080-75214099	None:intergenic	40.0%
	AAGTAGGCTGCAAGACAAGT+AGG	+	chr3_1:75211384-75211403	Msa0375450:five_prime_UTR	45.0%
	CGTTTCTTCTTTCTGCTGCA+TGG	+	chr3_1:75211433-75211452	Msa0375450:exon	45.0%
	CAAACCTGTATCGTTGTTGC+CGG	+	chr3_1:75211470-75211489	Msa0375450:CDS	45.0%
	GTCAATCCGTGAGTATTTGC+CGG	-	chr3_1:75211540-75211559	None:intergenic	45.0%
	ATACGTATCCCTGTGTAGCA+TGG	-	chr3_1:75211585-75211604	None:intergenic	45.0%
	TGGTAACAATAGGGCCTGTT+TGG	-	chr3_1:75211982-75212001	None:intergenic	45.0%
	CTAGAGAACACTCTAGTGAG+GGG	-	chr3_1:75212729-75212748	None:intergenic	45.0%
	TCTGAATTCCATGAACAGGC+GGG	+	chr3_1:75212935-75212954	Msa0375450:intron	45.0%
	AGTGAGACTCCCAGTTATTG+TGG	+	chr3_1:75212958-75212977	Msa0375450:CDS	45.0%
	AGACTCCCAGTTATTGTGGT+CGG	+	chr3_1:75212962-75212981	Msa0375450:CDS	45.0%
!	CATGCGTATTTTCATCTCGC+CGG	-	chr3_1:75213000-75213019	None:intergenic	45.0%
!!	TACGCATGTGAGCATTGATG+AGG	+	chr3_1:75213012-75213031	Msa0375450:CDS	45.0%
	GCTTGTCGTGTTCAGCAATT+AGG	+	chr3_1:75213077-75213096	Msa0375450:CDS	45.0%
	TGATCAGGAGTTTGTCTTGG+AGG	-	chr3_1:75213757-75213776	None:intergenic	45.0%
	TCCAAGACAAACTCCTGATC+AGG	+	chr3_1:75213756-75213775	Msa0375450:CDS	45.0%
	ACCTGATCAGGAGTTTGTCT+TGG	-	chr3_1:75213760-75213779	None:intergenic	45.0%
	CCTGGCGGAAGGAAAATATA+TGG	-	chr3_1:75214043-75214062	None:intergenic	45.0%
!	CCATATATTTTCCTTCCGCC+AGG	+	chr3_1:75214040-75214059	Msa0375450:intron	45.0%
	GACTTAGCATCTTATCCTGG+CGG	-	chr3_1:75214058-75214077	None:intergenic	45.0%
	GATAAGATGCTAAGTCCCCA+TGG	+	chr3_1:75214062-75214081	Msa0375450:CDS	45.0%
!!!	TGACTTGTTTTCTACTGCCC+CGG	+	chr3_1:75214091-75214110	Msa0375450:CDS	45.0%
	GCTCAACTGTGCAGTGAAGT+AGG	+	chr3_1:75211368-75211387	Msa0375450:five_prime_UTR	50.0%
	CCTTCACCGGCAAATACTCA+CGG	+	chr3_1:75211531-75211550	Msa0375450:CDS	50.0%
	GGCACTGTTACAATTCGTGC+TGG	+	chr3_1:75212148-75212167	Msa0375450:intron	50.0%
!	CCTGTCGATTGCGAAGTTCA+GGG	-	chr3_1:75212299-75212318	None:intergenic	50.0%
!	ACCTGTCGATTGCGAAGTTC+AGG	-	chr3_1:75212300-75212319	None:intergenic	50.0%
	AGGACTAACCTCCCTTTAGG+AGG	-	chr3_1:75212782-75212801	None:intergenic	50.0%
	TGGTCGGTTGTAAGCTTGAC+CGG	+	chr3_1:75212978-75212997	Msa0375450:CDS	50.0%
	TGAGGCGACGTCAGCAATTA+TGG	+	chr3_1:75213030-75213049	Msa0375450:CDS	50.0%
	TACTTCGCGGACCTTCAACA+AGG	-	chr3_1:75213190-75213209	None:intergenic	50.0%
	ATCCACTGCGATCAAGACGA+CGG	+	chr3_1:75213315-75213334	Msa0375450:CDS	50.0%
!	AAGGGCGTAAAGATGCAGTG+TGG	+	chr3_1:75213674-75213693	Msa0375450:CDS	50.0%
	ATGCAGTGTGGAATGTGCTC+TGG	+	chr3_1:75213686-75213705	Msa0375450:CDS	50.0%
	TAGCATCTTATCCTGGCGGA+AGG	-	chr3_1:75214054-75214073	None:intergenic	50.0%
	GGGGACTTAGCATCTTATCC+TGG	-	chr3_1:75214061-75214080	None:intergenic	50.0%
!	TGTTTTCTACTGCCCCGGAA+AGG	+	chr3_1:75214096-75214115	Msa0375450:CDS	50.0%
	ATCGCCGGCAACAACGATAC+AGG	-	chr3_1:75211477-75211496	None:intergenic	55.0%
	ATCGTTGTTGCCGGCGATGA+AGG	+	chr3_1:75211479-75211498	Msa0375450:CDS	55.0%
	CTTGCCAGTACCTTCATCGC+CGG	-	chr3_1:75211492-75211511	None:intergenic	55.0%
	CTCATCAGTGCTGCCTTCAC+CGG	+	chr3_1:75211518-75211537	Msa0375450:CDS	55.0%
	CCGTGAGTATTTGCCGGTGA+AGG	-	chr3_1:75211534-75211553	None:intergenic	55.0%
	GCGTGTCACCATGCTACACA+GGG	+	chr3_1:75211574-75211593	Msa0375450:CDS	55.0%
	CAATTACGTCAGCGCGCCAT+AGG	-	chr3_1:75212218-75212237	None:intergenic	55.0%
	CCCTGAACTTCGCAATCGAC+AGG	+	chr3_1:75212296-75212315	Msa0375450:CDS	55.0%
!!	TGAGGGGAGAGTGCTTCGAT+GGG	-	chr3_1:75212713-75212732	None:intergenic	55.0%
	TTCAGAGCCCGTTGACATCG+AGG	-	chr3_1:75213285-75213304	None:intergenic	55.0%
!!	GATGTCAACGGGCTCTGAAG+AGG	+	chr3_1:75213286-75213305	Msa0375450:CDS	55.0%
	CGATTCGCCTATGCCACACT+CGG	+	chr3_1:75213543-75213562	Msa0375450:CDS	55.0%
!	GTTGCCGGCGATGAAGGTAC+TGG	+	chr3_1:75211485-75211504	Msa0375450:CDS	60.0%
!	CACGGATTGACGCTCGCGTA+CGG	+	chr3_1:75211549-75211568	Msa0375450:CDS	60.0%
	GGCGTGTCACCATGCTACAC+AGG	+	chr3_1:75211573-75211592	Msa0375450:CDS	60.0%
!!	GAGGGGAGAGTGCTTCGATG+GGG	-	chr3_1:75212712-75212731	None:intergenic	60.0%
!!	GTGAGGGGAGAGTGCTTCGA+TGG	-	chr3_1:75212714-75212733	None:intergenic	60.0%
	GTCTCACTCCCGCCTGTTCA+TGG	-	chr3_1:75212946-75212965	None:intergenic	60.0%
	TGCCGTCGTCTTGATCGCAG+TGG	-	chr3_1:75213320-75213339	None:intergenic	60.0%
	GGATTGACGCTCGCGTACGG+CGG	+	chr3_1:75211552-75211571	Msa0375450:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	75211298	75214121	75211298	ID=Msa0375450;Name=Msa0375450
chr3_1	mRNA	75211298	75214121	75211298	ID=Msa0375450-mRNA-1;Parent=Msa0375450;Name=Msa0375450-mRNA-1;_AED=0.04;_eAED=0.04;_QI=154\|1\|0.71\|1\|1\|1\|7\|0\|341
chr3_1	exon	75211298	75211645	75211298	ID=Msa0375450-mRNA-1:exon:17583;Parent=Msa0375450-mRNA-1
chr3_1	exon	75212194	75212317	75212194	ID=Msa0375450-mRNA-1:exon:17584;Parent=Msa0375450-mRNA-1
chr3_1	exon	75212953	75213108	75212953	ID=Msa0375450-mRNA-1:exon:17585;Parent=Msa0375450-mRNA-1
chr3_1	exon	75213198	75213377	75213198	ID=Msa0375450-mRNA-1:exon:17586;Parent=Msa0375450-mRNA-1
chr3_1	exon	75213532	75213777	75213532	ID=Msa0375450-mRNA-1:exon:17587;Parent=Msa0375450-mRNA-1
chr3_1	exon	75213904	75213969	75213904	ID=Msa0375450-mRNA-1:exon:17588;Parent=Msa0375450-mRNA-1
chr3_1	exon	75214062	75214121	75214062	ID=Msa0375450-mRNA-1:exon:17589;Parent=Msa0375450-mRNA-1
chr3_1	five_prime_UTR	75211298	75211451	75211298	ID=Msa0375450-mRNA-1:five_prime_utr;Parent=Msa0375450-mRNA-1
chr3_1	CDS	75211452	75211645	75211452	ID=Msa0375450-mRNA-1:cds;Parent=Msa0375450-mRNA-1
chr3_1	CDS	75212194	75212317	75212194	ID=Msa0375450-mRNA-1:cds;Parent=Msa0375450-mRNA-1
chr3_1	CDS	75212953	75213108	75212953	ID=Msa0375450-mRNA-1:cds;Parent=Msa0375450-mRNA-1
chr3_1	CDS	75213198	75213377	75213198	ID=Msa0375450-mRNA-1:cds;Parent=Msa0375450-mRNA-1
chr3_1	CDS	75213532	75213777	75213532	ID=Msa0375450-mRNA-1:cds;Parent=Msa0375450-mRNA-1
chr3_1	CDS	75213904	75213969	75213904	ID=Msa0375450-mRNA-1:cds;Parent=Msa0375450-mRNA-1
chr3_1	CDS	75214062	75214121	75214062	ID=Msa0375450-mRNA-1:cds;Parent=Msa0375450-mRNA-1

Gene Sequence

>Msa0375450

ATGGAGAGATTCAAGAGACAAACCTGTATCGTTGTTGCCGGCGATGAAGGTACTGGCAAGTCGTCTCTCATCAGTGCTGCCTTCACCGGCAAATACTCACGGATTGACGCTCGCGTACGGCGGCGTGTCACCATGCTACACAGGGATACGTATCCTGATTTTGTGCCGAATTTAATCATTGAGGCCTCTTCAAACATTGACAAAATTTCTAAAGACCTATGGCGCGCTGACGTAATTGTCCTCACATATGCATTTGATCAGCCTGAAACACTTGAAAGAATAAGTAGTTTTTGGCTCCCTGAACTTCGCAATCGACAGGCGGGAGTGAGACTCCCAGTTATTGTGGTCGGTTGTAAGCTTGACCGGCGAGATGAAAATACGCATGTGAGCATTGATGAGGCGACGTCAGCAATTATGGACCAGTTCCACGAAATTGAAACTTGCTTGTCGTGTTCAGCAATTAGGAATAACAAGGTCCGCGAAGTATTCTTCTATGCTCAAAGGGCTTTTCTTTATCCAACAACTCCTTTGTTTGATAAGGAGACACAAACTTTAAAACCTCGATGTCAACGGGCTCTGAAGAGGATTTTTATCCACTGCGATCAAGACGACGGCAAAGCGCTAAACCATGATGAATTTAGTAATCATTACCAGCTTGTATGTTTCGATTCGCCTATGCCACACTCGGAATATATCACTGTATTGGAAGGCCTGAAAAAGATATCACCCGAATTTTGGAATTCGAAAGGAATTACTTTGTCCGGATTTCTATTTATTCATGCACGTTTCATAAAAGAAGGGCGTAAAGATGCAGTGTGGAATGTGCTCTGGAGACATTGCTACAACAATAACATTGAGTTTGCTGAAAATTTCAATCCTCCAAGACAAACTCCTGATCAGAGTGTTGAATTAACTAAAGAAGCTATTGATTTCTTGACATCAACTTTTGATAAATTTGCTGGTTCGGATAAGATGCTAAGTCCCCATGGACTTGATGACTTGTTTTCTACTGCCCCGGAAAGGTAG

Protein sequence

>Msa0375450

MERFKRQTCIVVAGDEGTGKSSLISAAFTGKYSRIDARVRRRVTMLHRDTYPDFVPNLIIEASSNIDKISKDLWRADVIVLTYAFDQPETLERISSFWLPELRNRQAGVRLPVIVVGCKLDRRDENTHVSIDEATSAIMDQFHEIETCLSCSAIRNNKVREVFFYAQRAFLYPTTPLFDKETQTLKPRCQRALKRIFIHCDQDDGKALNHDEFSNHYQLVCFDSPMPHSEYITVLEGLKKISPEFWNSKGITLSGFLFIHARFIKEGRKDAVWNVLWRHCYNNNIEFAENFNPPRQTPDQSVELTKEAIDFLTSTFDKFAGSDKMLSPHGLDDLFSTAPER*