Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391360 | AFK45596.1 | 56.319 | 364 | 150 | 6 | 10 | 368 | 19 | 378 | 2.89e-130 | 391 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391360 | sp|Q8RXF8|MIRO1_ARATH | 49.593 | 369 | 167 | 8 | 10 | 367 | 20 | 380 | 5.03e-111 | 341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391360 | I3SZA4 | 56.319 | 364 | 150 | 6 | 10 | 368 | 19 | 378 | 1.38e-130 | 391 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045090 | Msa0391360 | 0.800083 | 1.701921e-48 | -8.615850e-47 |
| Msa0375440 | Msa0391360 | 0.849699 | 2.733835e-60 | -8.615850e-47 |
| Msa0375450 | Msa0391360 | 0.942650 | 4.934550e-102 | -8.615850e-47 |
| Msa0375460 | Msa0391360 | 0.808396 | 3.162251e-50 | -8.615850e-47 |
| Msa0375470 | Msa0391360 | 0.852521 | 4.372054e-61 | -8.615850e-47 |
| Msa0375480 | Msa0391360 | 0.848384 | 6.341831e-60 | -8.615850e-47 |
| Msa0375600 | Msa0391360 | 0.815625 | 8.401363e-52 | -8.615850e-47 |
| Msa0391340 | Msa0391360 | 0.854667 | 1.056641e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391360 | MtrunA17_Chr1g0191811 | 56.319 | 364 | 150 | 6 | 10 | 368 | 19 | 378 | 7.76e-132 | 391 |
| Msa0391360 | MtrunA17_Chr5g0413741 | 49.725 | 364 | 156 | 6 | 10 | 368 | 64 | 405 | 1.47e-112 | 343 |
| Msa0391360 | MtrunA17_Chr5g0417151 | 53.618 | 304 | 136 | 4 | 67 | 368 | 40 | 340 | 1.22e-101 | 314 |
| Msa0391360 | MtrunA17_Chr7g0259771 | 42.192 | 365 | 201 | 7 | 10 | 368 | 11 | 371 | 1.30e-88 | 280 |
| Msa0391360 | MtrunA17_Chr4g0073381 | 44.954 | 327 | 165 | 7 | 52 | 368 | 3 | 324 | 9.32e-81 | 258 |
| Msa0391360 | MtrunA17_Chr1g0185591 | 38.919 | 370 | 212 | 8 | 6 | 367 | 11 | 374 | 3.11e-78 | 253 |
| Msa0391360 | MtrunA17_Chr4g0073061 | 41.161 | 379 | 193 | 8 | 16 | 368 | 29 | 403 | 3.21e-76 | 247 |
| Msa0391360 | MtrunA17_Chr5g0413461 | 48.667 | 150 | 75 | 2 | 221 | 368 | 6 | 155 | 1.94e-38 | 143 |
| Msa0391360 | MtrunA17_Chr5g0413781 | 62.791 | 86 | 30 | 2 | 292 | 376 | 4 | 88 | 3.05e-25 | 98.2 |
| Msa0391360 | MtrunA17_Chr8g0338031 | 29.592 | 294 | 170 | 10 | 10 | 285 | 36 | 310 | 1.32e-24 | 104 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0391360 | AT5G27540.1 | 49.593 | 369 | 167 | 8 | 10 | 367 | 20 | 380 | 5.11e-112 | 341 |
| Msa0391360 | AT5G27540.2 | 49.593 | 369 | 167 | 8 | 10 | 367 | 20 | 380 | 5.11e-112 | 341 |
| Msa0391360 | AT3G63150.1 | 44.658 | 365 | 192 | 6 | 10 | 368 | 17 | 377 | 3.10e-101 | 313 |
| Msa0391360 | AT3G05310.1 | 40.984 | 366 | 203 | 7 | 10 | 367 | 17 | 377 | 4.11e-86 | 274 |
| Msa0391360 | AT3G05310.3 | 39.914 | 233 | 135 | 3 | 139 | 367 | 1 | 232 | 8.18e-52 | 180 |
| Msa0391360 | AT3G05310.2 | 39.914 | 233 | 135 | 3 | 139 | 367 | 1 | 232 | 1.74e-51 | 179 |
Find 87 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATTCTTTCAAGTGTTTC+AGG | 0.129872 | 3_2:+2917070 | None:intergenic |
| AAAAGATATCACCCGAATTT+TGG | 0.144462 | 3_2:-2915738 | Msa0391360:CDS |
| GCTTGTCGTGTTCAGCAATT+AGG | 0.247839 | 3_2:-2916254 | Msa0391360:CDS |
| TCCTTTCGAATTCCAAAATT+CGG | 0.256306 | 3_2:+2915726 | None:intergenic |
| AGAAACGAAAATGAGTGATA+TGG | 0.278844 | 3_2:+2917914 | None:intergenic |
| CAGAAAGTAATCTACCTTTC+CGG | 0.279820 | 3_2:+2915221 | None:intergenic |
| ACCTGTCGATTGCGAAGTTC+AGG | 0.286668 | 3_2:+2917034 | None:intergenic |
| TGAGGCGACGTCAGCAATTA+TGG | 0.289500 | 3_2:-2916301 | Msa0391360:CDS |
| ATTAAATTCGGCACAAAATC+AGG | 0.310665 | 3_2:+2917726 | None:intergenic |
| TTACAACCGACCACAATAAC+TGG | 0.322500 | 3_2:+2916363 | None:intergenic |
| AACAACTCCTTTGTTTGATA+AGG | 0.348414 | 3_2:-2916089 | Msa0391360:CDS |
| CCTTTCGAATTCCAAAATTC+GGG | 0.358420 | 3_2:+2915727 | None:intergenic |
| AGAAAGTAATCTACCTTTCC+GGG | 0.373646 | 3_2:+2915222 | None:intergenic |
| AAGTTTCAATTTCGTGGAAC+TGG | 0.378799 | 3_2:+2916277 | None:intergenic |
| ACAAGCAAGTTTCAATTTCG+TGG | 0.393363 | 3_2:+2916271 | None:intergenic |
| TCGAAAGGAATTACTTTGTC+CGG | 0.396628 | 3_2:-2915712 | Msa0391360:CDS |
| CGTTTCTTCTTTCTGCTGCA+TGG | 0.398236 | 3_2:-2917898 | Msa0391360:exon |
| ATCGCCGGCAACAACGATAC+AGG | 0.405872 | 3_2:+2917857 | None:intergenic |
| ATCGTTGTTGCCGGCGATGA+AGG | 0.427852 | 3_2:-2917852 | Msa0391360:CDS |
| TTATCAAACAAAGGAGTTGT+TGG | 0.428138 | 3_2:+2916091 | None:intergenic |
| TGATCAGGAGTTTGTCTTGG+AGG | 0.444623 | 3_2:+2915577 | None:intergenic |
| GAAACGAAAATGAGTGATAT+GGG | 0.445386 | 3_2:+2917915 | None:intergenic |
| CATGCACGTTTCATAAAAGA+AGG | 0.446920 | 3_2:-2915676 | Msa0391360:CDS |
| GAGGCCTCAATGATTAAATT+CGG | 0.447013 | 3_2:+2917714 | None:intergenic |
| TCTCAAAAGAAAACCTGATC+AGG | 0.447396 | 3_2:+2915562 | None:intergenic |
| CTCGGAATATATCACTGTAT+TGG | 0.450491 | 3_2:-2915770 | Msa0391360:CDS |
| ATACGAGGATGCTGTAGAAC+AGG | 0.454930 | 3_2:-2914906 | Msa0391360:CDS |
| ACAAAATTTCTAAAGACCTA+TGG | 0.458345 | 3_2:-2917132 | Msa0391360:CDS |
| TCCAAGACAAACTCCTGATC+AGG | 0.459090 | 3_2:-2915575 | Msa0391360:intron |
| TTTAAAACCTCGATGTCAAC+GGG | 0.459364 | 3_2:-2916056 | Msa0391360:CDS |
| TGCATGAATAAATAGAAATC+CGG | 0.460394 | 3_2:+2915693 | None:intergenic |
| ACCTGATCAGGAGTTTGTCT+TGG | 0.463328 | 3_2:+2915574 | None:intergenic |
| GTCAATCCGTGAGTATTTGC+CGG | 0.464020 | 3_2:+2917794 | None:intergenic |
| CAAACCTGTATCGTTGTTGC+CGG | 0.474045 | 3_2:-2917861 | Msa0391360:CDS |
| CCCTGAACTTCGCAATCGAC+AGG | 0.483590 | 3_2:-2917035 | Msa0391360:intron |
| CTCATCAGTGCTGCCTTCAC+CGG | 0.496737 | 3_2:-2917813 | Msa0391360:CDS |
| AATGATTACTAAATTCATCA+TGG | 0.501213 | 3_2:+2915981 | None:intergenic |
| TGGTCGGTTGTAAGCTTGAC+CGG | 0.501890 | 3_2:-2916353 | Msa0391360:CDS |
| GCTCAACTGTGCAGTGAAGT+AGG | 0.511099 | 3_2:-2917963 | Msa0391360:five_prime_UTR |
| AAAACAAGTCATCAAGTCCA+TGG | 0.520280 | 3_2:+2915252 | None:intergenic |
| TTTAATTGCAGTCCCTGGGT+TGG | 0.520820 | 3_2:-2914935 | Msa0391360:intron |
| ATGCAGTGTGGAATGTGCTC+TGG | 0.534960 | 3_2:-2915645 | Msa0391360:CDS |
| GTTGCCGGCGATGAAGGTAC+TGG | 0.535231 | 3_2:-2917846 | Msa0391360:CDS |
| CACGGATTGACGCTCGCGTA+CGG | 0.536119 | 3_2:-2917782 | Msa0391360:CDS |
| CTTTAAAACCTCGATGTCAA+CGG | 0.544297 | 3_2:-2916057 | Msa0391360:CDS |
| GTAGAACAGGATGCTGTTCG+AGG | 0.545422 | 3_2:-2914893 | Msa0391360:CDS |
| CCGTGAGTATTTGCCGGTGA+AGG | 0.547725 | 3_2:+2917800 | None:intergenic |
| AAGTAGGCTGCAAGACAAGT+AGG | 0.549864 | 3_2:-2917947 | Msa0391360:five_prime_UTR |
| CCTGTCGATTGCGAAGTTCA+GGG | 0.551690 | 3_2:+2917035 | None:intergenic |
| GAGCATAGAAGAATACTTCG+CGG | 0.553810 | 3_2:+2916131 | None:intergenic |
| CAATTACGTCAGCGCGCCAT+AGG | 0.555947 | 3_2:+2917116 | None:intergenic |
| AAGTATTCTTCTATGCTCAA+AGG | 0.556268 | 3_2:-2916126 | Msa0391360:CDS |
| AGTATTCTTCTATGCTCAAA+GGG | 0.557673 | 3_2:-2916125 | Msa0391360:CDS |
| ATATATTCCGAGTGTGGCAT+AGG | 0.559084 | 3_2:+2915781 | None:intergenic |
| TGTGCCGAATTTAATCATTG+AGG | 0.561625 | 3_2:-2917718 | Msa0391360:CDS |
| GATGTCAACGGGCTCTGAAG+AGG | 0.565007 | 3_2:-2916045 | Msa0391360:CDS |
| AGTGAGACTCCCAGTTATTG+TGG | 0.565058 | 3_2:-2916373 | Msa0391360:CDS |
| AAACAAGTCATCAAGTCCAT+GGG | 0.566028 | 3_2:+2915253 | None:intergenic |
| GAATATATCACTGTATTGGA+AGG | 0.567442 | 3_2:-2915766 | Msa0391360:CDS |
| CGTTTAGCAACAAAAGAAAG+AGG | 0.568925 | 3_2:-2917985 | Msa0391360:five_prime_UTR |
| TGAATTTAGTAATCATTACC+AGG | 0.569538 | 3_2:-2915975 | Msa0391360:intron |
| GGCGTGTCACCATGCTACAC+AGG | 0.576386 | 3_2:-2917758 | Msa0391360:CDS |
| CGATTCGCCTATGCCACACT+CGG | 0.580314 | 3_2:-2915788 | Msa0391360:CDS |
| AGACTCCCAGTTATTGTGGT+CGG | 0.582685 | 3_2:-2916369 | Msa0391360:CDS |
| TGTGTCTCCTTATCAAACAA+AGG | 0.586680 | 3_2:+2916082 | None:intergenic |
| GGATTGACGCTCGCGTACGG+CGG | 0.593491 | 3_2:-2917779 | Msa0391360:CDS |
| TTCAGAGCCCGTTGACATCG+AGG | 0.598766 | 3_2:+2916049 | None:intergenic |
| TCGTATAGATTTCCAACCCA+GGG | 0.617769 | 3_2:+2914923 | None:intergenic |
| TACAACCGACCACAATAACT+GGG | 0.620360 | 3_2:+2916364 | None:intergenic |
| CCTTCACCGGCAAATACTCA+CGG | 0.620951 | 3_2:-2917800 | Msa0391360:CDS |
| CTCGTATAGATTTCCAACCC+AGG | 0.622142 | 3_2:+2914922 | None:intergenic |
| CTTGCCAGTACCTTCATCGC+CGG | 0.622843 | 3_2:+2917842 | None:intergenic |
| GATAAGATGCTAAGTCCCCA+TGG | 0.628259 | 3_2:-2915269 | Msa0391360:CDS |
| AAAATCGAAACGACTCAACA+AGG | 0.630560 | 3_2:-2918011 | Msa0391360:five_prime_UTR |
| ATACGTATCCCTGTGTAGCA+TGG | 0.631528 | 3_2:+2917749 | None:intergenic |
| ATGCACGTTTCATAAAAGAA+GGG | 0.633763 | 3_2:-2915675 | Msa0391360:CDS |
| ACAGTGATATATTCCGAGTG+TGG | 0.649325 | 3_2:+2915775 | None:intergenic |
| TACGCATGTGAGCATTGATG+AGG | 0.651788 | 3_2:-2916319 | Msa0391360:CDS |
| TGCCGTCGTCTTGATCGCAG+TGG | 0.652519 | 3_2:+2916014 | None:intergenic |
| ATCCACTGCGATCAAGACGA+CGG | 0.657411 | 3_2:-2916016 | Msa0391360:CDS |
| GCGTGTCACCATGCTACACA+GGG | 0.662270 | 3_2:-2917757 | Msa0391360:CDS |
| GCTGATCAAATGCATATGTG+AGG | 0.679443 | 3_2:+2917092 | None:intergenic |
| TTCAGCAATTAGGAATAACA+AGG | 0.686962 | 3_2:-2916244 | Msa0391360:intron |
| CTGGGTTGGAAATCTATACG+AGG | 0.688059 | 3_2:-2914921 | Msa0391360:CDS |
| GAAAGTAATCTACCTTTCCG+GGG | 0.693841 | 3_2:+2915223 | None:intergenic |
| AACAAGTCATCAAGTCCATG+GGG | 0.701960 | 3_2:+2915254 | None:intergenic |
| AAGGGCGTAAAGATGCAGTG+TGG | 0.752059 | 3_2:-2915657 | Msa0391360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAAAAAATTACTTTGAAG+AGG | + | chr3_2:2915179-2915198 | None:intergenic | 15.0% |
| !! | TAGTAAAAGAAATATATTCA+AGG | + | chr3_2:2916174-2916193 | None:intergenic | 15.0% |
| !!! | AATTTCTTTTCTATTCATAT+TGG | - | chr3_2:2917406-2917425 | Msa0391360:intron | 15.0% |
| !!! | TTGAAAGAATAAGTAGTTTT+TGG | - | chr3_2:2915811-2915830 | Msa0391360:intron | 20.0% |
| !! | AAAATTCAAAAGAAAATGAG+AGG | + | chr3_2:2915868-2915887 | None:intergenic | 20.0% |
| !!! | CTTTCAAAATCTTATTTCAA+AGG | - | chr3_2:2916671-2916690 | Msa0391360:intron | 20.0% |
| !! | TAATTAATATTCCTTGTTGA+AGG | - | chr3_2:2916716-2916735 | Msa0391360:intron | 20.0% |
| !! | AATGATTACTAAATTCATCA+TGG | + | chr3_2:2916893-2916912 | None:intergenic | 20.0% |
| !!! | TGTTAATATCATTTTATGCT+AGG | - | chr3_2:2917001-2917020 | Msa0391360:intron | 20.0% |
| !! | TGAAAAGGTAAAATTATTCA+AGG | + | chr3_2:2917532-2917551 | None:intergenic | 20.0% |
| !! | ATGAATAATAATGTGAACTT+AGG | + | chr3_2:2917687-2917706 | None:intergenic | 20.0% |
| !! | ACATTATTATTCATTTGAAC+TGG | - | chr3_2:2917693-2917712 | Msa0391360:intron | 20.0% |
| !!! | GTTTTTATATAATCTAGCTA+TGG | - | chr3_2:2917835-2917854 | Msa0391360:CDS | 20.0% |
| !! | TTTACTCAATAGTTGTTGTT+TGG | - | chr3_2:2915666-2915685 | Msa0391360:CDS | 25.0% |
| !!! | TTACTCAATAGTTGTTGTTT+GGG | - | chr3_2:2915667-2915686 | Msa0391360:CDS | 25.0% |
| !! | ACAAAATTTCTAAAGACCTA+TGG | - | chr3_2:2915739-2915758 | Msa0391360:CDS | 25.0% |
| !!! | TTTTAGAGAATGAATGTGTT+AGG | - | chr3_2:2916034-2916053 | Msa0391360:CDS | 25.0% |
| !! | GAATTCTTCTTTTCTCAATT+TGG | + | chr3_2:2916152-2916171 | None:intergenic | 25.0% |
| !! | TCTTTTACTATCAACTGAAT+AGG | - | chr3_2:2916184-2916203 | Msa0391360:intron | 25.0% |
| ! | TAGTCCTATTTATAAACCAT+AGG | - | chr3_2:2916335-2916354 | Msa0391360:CDS | 25.0% |
| ! | AGTCCTATTTATAAACCATA+GGG | - | chr3_2:2916336-2916355 | Msa0391360:CDS | 25.0% |
| ! | TAACCCTATGGTTTATAAAT+AGG | + | chr3_2:2916342-2916361 | None:intergenic | 25.0% |
| ! | TGGAGTTAAGAAGTTAATTA+GGG | + | chr3_2:2916402-2916421 | None:intergenic | 25.0% |
| ! | TTGGAGTTAAGAAGTTAATT+AGG | + | chr3_2:2916403-2916422 | None:intergenic | 25.0% |
| !! | TCAAAATCTTATTTCAAAGG+TGG | - | chr3_2:2916674-2916693 | Msa0391360:intron | 25.0% |
| ! | TGAATTTAGTAATCATTACC+AGG | - | chr3_2:2916896-2916915 | Msa0391360:intron | 25.0% |
| !!! | CACAATTTTGACAGTTAATA+CGG | + | chr3_2:2916940-2916959 | None:intergenic | 25.0% |
| ! | TGCATGAATAAATAGAAATC+CGG | + | chr3_2:2917181-2917200 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTGAGATGAATTG+TGG | - | chr3_2:2917319-2917338 | Msa0391360:intron | 25.0% |
| !! | TCAACTTTTGATAAATTTGC+TGG | - | chr3_2:2917483-2917502 | Msa0391360:intron | 25.0% |
| !!! | TTTTGATAAATTTGCTGGTT+CGG | - | chr3_2:2917488-2917507 | Msa0391360:intron | 25.0% |
| !! | TTTTTAAATGTTTACCTCTC+CGG | - | chr3_2:2917860-2917879 | Msa0391360:CDS | 25.0% |
| ! | CTCTTTCTTTTGTTGCTAAA+CGG | + | chr3_2:2914888-2914907 | None:intergenic | 30.0% |
| GAAACGAAAATGAGTGATAT+GGG | + | chr3_2:2914959-2914978 | None:intergenic | 30.0% | |
| AGAAACGAAAATGAGTGATA+TGG | + | chr3_2:2914960-2914979 | None:intergenic | 30.0% | |
| ATTAAATTCGGCACAAAATC+AGG | + | chr3_2:2915148-2915167 | None:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | - | chr3_2:2915505-2915524 | Msa0391360:intron | 30.0% | |
| !! | ACACAATGTTGGTAACAATA+GGG | + | chr3_2:2915531-2915550 | None:intergenic | 30.0% |
| !! | AACACAATGTTGGTAACAAT+AGG | + | chr3_2:2915532-2915551 | None:intergenic | 30.0% |
| AGACTCATAAAACACAATGT+TGG | + | chr3_2:2915542-2915561 | None:intergenic | 30.0% | |
| GTAAAAAACCAGTAGACTAA+TGG | - | chr3_2:2915565-2915584 | Msa0391360:intron | 30.0% | |
| AACTATTGAGTAAATGCACA+AGG | + | chr3_2:2915660-2915679 | None:intergenic | 30.0% | |
| ! | CTTATTCTTTCAAGTGTTTC+AGG | + | chr3_2:2915804-2915823 | None:intergenic | 30.0% |
| TACTATTCTGCAAGAATGTA+AGG | - | chr3_2:2915925-2915944 | Msa0391360:intron | 30.0% | |
| CTGTACAATTACCAAAAGAA+AGG | + | chr3_2:2916062-2916081 | None:intergenic | 30.0% | |
| AATTCATTTCTGTCCAGTTT+CGG | + | chr3_2:2916090-2916109 | None:intergenic | 30.0% | |
| ATTGAAAGAGAAGACACAAA+AGG | - | chr3_2:2916207-2916226 | Msa0391360:intron | 30.0% | |
| TGATTAACTAATCCTCCTAA+AGG | - | chr3_2:2916307-2916326 | Msa0391360:CDS | 30.0% | |
| GATTAACTAATCCTCCTAAA+GGG | - | chr3_2:2916308-2916327 | Msa0391360:CDS | 30.0% | |
| GGAGTTAAGAAGTTAATTAG+GGG | + | chr3_2:2916401-2916420 | None:intergenic | 30.0% | |
| TTCAGCAATTAGGAATAACA+AGG | - | chr3_2:2916627-2916646 | Msa0391360:intron | 30.0% | |
| AAGTATTCTTCTATGCTCAA+AGG | - | chr3_2:2916745-2916764 | Msa0391360:intron | 30.0% | |
| AGTATTCTTCTATGCTCAAA+GGG | - | chr3_2:2916746-2916765 | Msa0391360:intron | 30.0% | |
| TTATCAAACAAAGGAGTTGT+TGG | + | chr3_2:2916783-2916802 | None:intergenic | 30.0% | |
| ! | AACAACTCCTTTGTTTGATA+AGG | - | chr3_2:2916782-2916801 | Msa0391360:intron | 30.0% |
| CGTATTAACTGTCAAAATTG+TGG | - | chr3_2:2916938-2916957 | Msa0391360:intron | 30.0% | |
| GAATATATCACTGTATTGGA+AGG | - | chr3_2:2917105-2917124 | Msa0391360:CDS | 30.0% | |
| ! | AAAAGATATCACCCGAATTT+TGG | - | chr3_2:2917133-2917152 | Msa0391360:CDS | 30.0% |
| TCCTTTCGAATTCCAAAATT+CGG | + | chr3_2:2917148-2917167 | None:intergenic | 30.0% | |
| ATGCACGTTTCATAAAAGAA+GGG | - | chr3_2:2917196-2917215 | Msa0391360:intron | 30.0% | |
| ATGTAGCATCTTTCTTATGT+TGG | - | chr3_2:2917744-2917763 | Msa0391360:CDS | 30.0% | |
| !! | TAATTTTTAATTGCAGTCCC+TGG | - | chr3_2:2917931-2917950 | Msa0391360:five_prime_UTR | 30.0% |
| !! | AATTTTTAATTGCAGTCCCT+GGG | - | chr3_2:2917932-2917951 | Msa0391360:five_prime_UTR | 30.0% |
| !! | ACTTGATTCATTTTTGTCAG+AGG | - | chr3_2:2918007-2918026 | Msa0391360:five_prime_UTR | 30.0% |
| AAAATCGAAACGACTCAACA+AGG | - | chr3_2:2914860-2914879 | Msa0391360:CDS | 35.0% | |
| CGTTTAGCAACAAAAGAAAG+AGG | - | chr3_2:2914886-2914905 | Msa0391360:CDS | 35.0% | |
| TGTGCCGAATTTAATCATTG+AGG | - | chr3_2:2915153-2915172 | Msa0391360:intron | 35.0% | |
| GAGGCCTCAATGATTAAATT+CGG | + | chr3_2:2915160-2915179 | None:intergenic | 35.0% | |
| GAGTAAGCAATAAAGCGAAA+TGG | + | chr3_2:2915234-2915253 | None:intergenic | 35.0% | |
| CAAGCACTTATCATGATAAG+TGG | + | chr3_2:2915471-2915490 | None:intergenic | 35.0% | |
| ! | ACAATGTACCATTAGTCTAC+TGG | + | chr3_2:2915576-2915595 | None:intergenic | 35.0% |
| ! | GTACATTGTACCTTGATTTG+TGG | - | chr3_2:2915587-2915606 | Msa0391360:CDS | 35.0% |
| !! | CTTATGCTCTAAAGAGGAAT+AGG | + | chr3_2:2915625-2915644 | None:intergenic | 35.0% |
| !! | CTATTCCTCTTTAGAGCATA+AGG | - | chr3_2:2915623-2915642 | Msa0391360:CDS | 35.0% |
| !! | AAAAGCCTTATGCTCTAAAG+AGG | + | chr3_2:2915631-2915650 | None:intergenic | 35.0% |
| ATTGAGTAAATGCACAAGGA+TGG | + | chr3_2:2915656-2915675 | None:intergenic | 35.0% | |
| GCTTGTGCGTATTAATAGAA+AGG | + | chr3_2:2915953-2915972 | None:intergenic | 35.0% | |
| ! | TGTGTTAGGAACCTTTCTTT+TGG | - | chr3_2:2916048-2916067 | Msa0391360:CDS | 35.0% |
| ATTCATTTCTGTCCAGTTTC+GGG | + | chr3_2:2916089-2916108 | None:intergenic | 35.0% | |
| !! | TTCACTTGCTATTAACCCTA+TGG | + | chr3_2:2916354-2916373 | None:intergenic | 35.0% |
| TGTATGTCAAGCTTTCTGTT+GGG | + | chr3_2:2916453-2916472 | None:intergenic | 35.0% | |
| ATGTATGTCAAGCTTTCTGT+TGG | + | chr3_2:2916454-2916473 | None:intergenic | 35.0% | |
| CATATCTGAATTCCATGAAC+AGG | - | chr3_2:2916471-2916490 | Msa0391360:intron | 35.0% | |
| AAGTTTCAATTTCGTGGAAC+TGG | + | chr3_2:2916597-2916616 | None:intergenic | 35.0% | |
| ACAAGCAAGTTTCAATTTCG+TGG | + | chr3_2:2916603-2916622 | None:intergenic | 35.0% | |
| TGTGTCTCCTTATCAAACAA+AGG | + | chr3_2:2916792-2916811 | None:intergenic | 35.0% | |
| !! | CTTTAAAACCTCGATGTCAA+CGG | - | chr3_2:2916814-2916833 | Msa0391360:intron | 35.0% |
| ! | TTTAAAACCTCGATGTCAAC+GGG | - | chr3_2:2916815-2916834 | Msa0391360:intron | 35.0% |
| CAGAGAGAAAAACTAAAACC+TGG | + | chr3_2:2916917-2916936 | None:intergenic | 35.0% | |
| CTCGGAATATATCACTGTAT+TGG | - | chr3_2:2917101-2917120 | Msa0391360:CDS | 35.0% | |
| ! | ATTCGGGTGATATCTTTTTC+AGG | + | chr3_2:2917131-2917150 | None:intergenic | 35.0% |
| CCTTTCGAATTCCAAAATTC+GGG | + | chr3_2:2917147-2917166 | None:intergenic | 35.0% | |
| TCGAAAGGAATTACTTTGTC+CGG | - | chr3_2:2917159-2917178 | Msa0391360:intron | 35.0% | |
| CATGCACGTTTCATAAAAGA+AGG | - | chr3_2:2917195-2917214 | Msa0391360:intron | 35.0% | |
| TCTCAAAAGAAAACCTGATC+AGG | + | chr3_2:2917312-2917331 | None:intergenic | 35.0% | |
| TGCACATTGCAAGTATGAAA+AGG | + | chr3_2:2917547-2917566 | None:intergenic | 35.0% | |
| AAACAAGTCATCAAGTCCAT+GGG | + | chr3_2:2917621-2917640 | None:intergenic | 35.0% | |
| AAAACAAGTCATCAAGTCCA+TGG | + | chr3_2:2917622-2917641 | None:intergenic | 35.0% | |
| AGAAAGTAATCTACCTTTCC+GGG | + | chr3_2:2917652-2917671 | None:intergenic | 35.0% | |
| CAGAAAGTAATCTACCTTTC+CGG | + | chr3_2:2917653-2917672 | None:intergenic | 35.0% | |
| CAAAGAAGAGCCACAAATCA+AGG | + | chr3_2:2915600-2915619 | None:intergenic | 40.0% | |
| GCTGATCAAATGCATATGTG+AGG | + | chr3_2:2915782-2915801 | None:intergenic | 40.0% | |
| TTGTACAGAATTCCCGAAAC+TGG | - | chr3_2:2916074-2916093 | Msa0391360:CDS | 40.0% | |
| !! | CAAAAGGTATCTTGCACTCA+AGG | - | chr3_2:2916223-2916242 | Msa0391360:intron | 40.0% |
| ACTAGAGAACACTCTAGTGA+GGG | + | chr3_2:2916270-2916289 | None:intergenic | 40.0% | |
| AACTAGAGAACACTCTAGTG+AGG | + | chr3_2:2916271-2916290 | None:intergenic | 40.0% | |
| TAACTAATCCTCCTAAAGGG+AGG | - | chr3_2:2916311-2916330 | Msa0391360:CDS | 40.0% | |
| AATAGGACTAACCTCCCTTT+AGG | + | chr3_2:2916325-2916344 | None:intergenic | 40.0% | |
| !! | TACAGGGGAGTTTGTTAGAT+TGG | + | chr3_2:2916422-2916441 | None:intergenic | 40.0% |
| TGTTGGGACTTAGAATACAG+GGG | + | chr3_2:2916437-2916456 | None:intergenic | 40.0% | |
| CTGTTGGGACTTAGAATACA+GGG | + | chr3_2:2916438-2916457 | None:intergenic | 40.0% | |
| TCTGTTGGGACTTAGAATAC+AGG | + | chr3_2:2916439-2916458 | None:intergenic | 40.0% | |
| ATCTGAATTCCATGAACAGG+CGG | - | chr3_2:2916474-2916493 | Msa0391360:intron | 40.0% | |
| TACAACCGACCACAATAACT+GGG | + | chr3_2:2916510-2916529 | None:intergenic | 40.0% | |
| TTACAACCGACCACAATAAC+TGG | + | chr3_2:2916511-2916530 | None:intergenic | 40.0% | |
| GAGCATAGAAGAATACTTCG+CGG | + | chr3_2:2916743-2916762 | None:intergenic | 40.0% | |
| ATATATTCCGAGTGTGGCAT+AGG | + | chr3_2:2917093-2917112 | None:intergenic | 40.0% | |
| ACAGTGATATATTCCGAGTG+TGG | + | chr3_2:2917099-2917118 | None:intergenic | 40.0% | |
| !!! | CCCGAATTTTGGAATTCGAA+AGG | - | chr3_2:2917144-2917163 | Msa0391360:intron | 40.0% |
| AACAAGTCATCAAGTCCATG+GGG | + | chr3_2:2917620-2917639 | None:intergenic | 40.0% | |
| GAAAGTAATCTACCTTTCCG+GGG | + | chr3_2:2917651-2917670 | None:intergenic | 40.0% | |
| TGGTTTCTTACGATCACAAC+TGG | - | chr3_2:2917713-2917732 | Msa0391360:CDS | 40.0% | |
| CTTCATTGGCATTTAGACTC+CGG | + | chr3_2:2917882-2917901 | None:intergenic | 40.0% | |
| TAAATGCCAATGAAGGCTCT+TGG | - | chr3_2:2917887-2917906 | Msa0391360:exon | 40.0% | |
| TCGTATAGATTTCCAACCCA+GGG | + | chr3_2:2917951-2917970 | None:intergenic | 40.0% | |
| AAGTAGGCTGCAAGACAAGT+AGG | - | chr3_2:2914924-2914943 | Msa0391360:CDS | 45.0% | |
| CGTTTCTTCTTTCTGCTGCA+TGG | - | chr3_2:2914973-2914992 | Msa0391360:intron | 45.0% | |
| CAAACCTGTATCGTTGTTGC+CGG | - | chr3_2:2915010-2915029 | Msa0391360:intron | 45.0% | |
| GTCAATCCGTGAGTATTTGC+CGG | + | chr3_2:2915080-2915099 | None:intergenic | 45.0% | |
| ATACGTATCCCTGTGTAGCA+TGG | + | chr3_2:2915125-2915144 | None:intergenic | 45.0% | |
| TGGTAACAATAGGGCCTGTT+TGG | + | chr3_2:2915522-2915541 | None:intergenic | 45.0% | |
| CTAGAGAACACTCTAGTGAG+GGG | + | chr3_2:2916269-2916288 | None:intergenic | 45.0% | |
| TCTGAATTCCATGAACAGGC+GGG | - | chr3_2:2916475-2916494 | Msa0391360:intron | 45.0% | |
| AGTGAGACTCCCAGTTATTG+TGG | - | chr3_2:2916498-2916517 | Msa0391360:intron | 45.0% | |
| AGACTCCCAGTTATTGTGGT+CGG | - | chr3_2:2916502-2916521 | Msa0391360:intron | 45.0% | |
| ! | CATGCGTATTTTCATCTCGC+CGG | + | chr3_2:2916540-2916559 | None:intergenic | 45.0% |
| !! | TACGCATGTGAGCATTGATG+AGG | - | chr3_2:2916552-2916571 | Msa0391360:intron | 45.0% |
| GCTTGTCGTGTTCAGCAATT+AGG | - | chr3_2:2916617-2916636 | Msa0391360:intron | 45.0% | |
| TGATCAGGAGTTTGTCTTGG+AGG | + | chr3_2:2917297-2917316 | None:intergenic | 45.0% | |
| TCCAAGACAAACTCCTGATC+AGG | - | chr3_2:2917296-2917315 | Msa0391360:intron | 45.0% | |
| ACCTGATCAGGAGTTTGTCT+TGG | + | chr3_2:2917300-2917319 | None:intergenic | 45.0% | |
| CCTGGCGGAAGGAAAATATA+TGG | + | chr3_2:2917583-2917602 | None:intergenic | 45.0% | |
| ! | CCATATATTTTCCTTCCGCC+AGG | - | chr3_2:2917580-2917599 | Msa0391360:intron | 45.0% |
| GACTTAGCATCTTATCCTGG+CGG | + | chr3_2:2917598-2917617 | None:intergenic | 45.0% | |
| GATAAGATGCTAAGTCCCCA+TGG | - | chr3_2:2917602-2917621 | Msa0391360:intron | 45.0% | |
| !!! | TGACTTGTTTTCTACTGCCC+CGG | - | chr3_2:2917631-2917650 | Msa0391360:intron | 45.0% |
| CGGAGTCTAAATGCCAATGA+AGG | - | chr3_2:2917880-2917899 | Msa0391360:CDS | 45.0% | |
| TTTAATTGCAGTCCCTGGGT+TGG | - | chr3_2:2917936-2917955 | Msa0391360:five_prime_UTR | 45.0% | |
| CTCGTATAGATTTCCAACCC+AGG | + | chr3_2:2917952-2917971 | None:intergenic | 45.0% | |
| ! | CTGGGTTGGAAATCTATACG+AGG | - | chr3_2:2917950-2917969 | Msa0391360:five_prime_UTR | 45.0% |
| ATACGAGGATGCTGTAGAAC+AGG | - | chr3_2:2917965-2917984 | Msa0391360:five_prime_UTR | 45.0% | |
| GCTCAACTGTGCAGTGAAGT+AGG | - | chr3_2:2914908-2914927 | Msa0391360:CDS | 50.0% | |
| CCTTCACCGGCAAATACTCA+CGG | - | chr3_2:2915071-2915090 | Msa0391360:intron | 50.0% | |
| GGCACTGTTACAATTCGTGC+TGG | - | chr3_2:2915688-2915707 | Msa0391360:CDS | 50.0% | |
| ! | CCTGTCGATTGCGAAGTTCA+GGG | + | chr3_2:2915839-2915858 | None:intergenic | 50.0% |
| ! | ACCTGTCGATTGCGAAGTTC+AGG | + | chr3_2:2915840-2915859 | None:intergenic | 50.0% |
| AGGACTAACCTCCCTTTAGG+AGG | + | chr3_2:2916322-2916341 | None:intergenic | 50.0% | |
| TGGTCGGTTGTAAGCTTGAC+CGG | - | chr3_2:2916518-2916537 | Msa0391360:intron | 50.0% | |
| TGAGGCGACGTCAGCAATTA+TGG | - | chr3_2:2916570-2916589 | Msa0391360:intron | 50.0% | |
| TACTTCGCGGACCTTCAACA+AGG | + | chr3_2:2916730-2916749 | None:intergenic | 50.0% | |
| ATCCACTGCGATCAAGACGA+CGG | - | chr3_2:2916855-2916874 | Msa0391360:intron | 50.0% | |
| ! | AAGGGCGTAAAGATGCAGTG+TGG | - | chr3_2:2917214-2917233 | Msa0391360:intron | 50.0% |
| ATGCAGTGTGGAATGTGCTC+TGG | - | chr3_2:2917226-2917245 | Msa0391360:intron | 50.0% | |
| TAGCATCTTATCCTGGCGGA+AGG | + | chr3_2:2917594-2917613 | None:intergenic | 50.0% | |
| GGGGACTTAGCATCTTATCC+TGG | + | chr3_2:2917601-2917620 | None:intergenic | 50.0% | |
| ! | TGTTTTCTACTGCCCCGGAA+AGG | - | chr3_2:2917636-2917655 | Msa0391360:intron | 50.0% |
| TTGGCATTTAGACTCCGGAG+AGG | + | chr3_2:2917877-2917896 | None:intergenic | 50.0% | |
| TCACAGCCAAGAGCCTTCAT+TGG | + | chr3_2:2917896-2917915 | None:intergenic | 50.0% | |
| GTAGAACAGGATGCTGTTCG+AGG | - | chr3_2:2917978-2917997 | Msa0391360:five_prime_UTR | 50.0% | |
| ATCGCCGGCAACAACGATAC+AGG | + | chr3_2:2915017-2915036 | None:intergenic | 55.0% | |
| ATCGTTGTTGCCGGCGATGA+AGG | - | chr3_2:2915019-2915038 | Msa0391360:intron | 55.0% | |
| CTTGCCAGTACCTTCATCGC+CGG | + | chr3_2:2915032-2915051 | None:intergenic | 55.0% | |
| CTCATCAGTGCTGCCTTCAC+CGG | - | chr3_2:2915058-2915077 | Msa0391360:intron | 55.0% | |
| CCGTGAGTATTTGCCGGTGA+AGG | + | chr3_2:2915074-2915093 | None:intergenic | 55.0% | |
| GCGTGTCACCATGCTACACA+GGG | - | chr3_2:2915114-2915133 | Msa0391360:intron | 55.0% | |
| CAATTACGTCAGCGCGCCAT+AGG | + | chr3_2:2915758-2915777 | None:intergenic | 55.0% | |
| CCCTGAACTTCGCAATCGAC+AGG | - | chr3_2:2915836-2915855 | Msa0391360:intron | 55.0% | |
| !! | TGAGGGGAGAGTGCTTCGAT+GGG | + | chr3_2:2916253-2916272 | None:intergenic | 55.0% |
| TTCAGAGCCCGTTGACATCG+AGG | + | chr3_2:2916825-2916844 | None:intergenic | 55.0% | |
| !! | GATGTCAACGGGCTCTGAAG+AGG | - | chr3_2:2916826-2916845 | Msa0391360:intron | 55.0% |
| CGATTCGCCTATGCCACACT+CGG | - | chr3_2:2917083-2917102 | Msa0391360:CDS | 55.0% | |
| ! | GTTGCCGGCGATGAAGGTAC+TGG | - | chr3_2:2915025-2915044 | Msa0391360:intron | 60.0% |
| ! | CACGGATTGACGCTCGCGTA+CGG | - | chr3_2:2915089-2915108 | Msa0391360:intron | 60.0% |
| GGCGTGTCACCATGCTACAC+AGG | - | chr3_2:2915113-2915132 | Msa0391360:intron | 60.0% | |
| !! | GAGGGGAGAGTGCTTCGATG+GGG | + | chr3_2:2916252-2916271 | None:intergenic | 60.0% |
| !! | GTGAGGGGAGAGTGCTTCGA+TGG | + | chr3_2:2916254-2916273 | None:intergenic | 60.0% |
| GTCTCACTCCCGCCTGTTCA+TGG | + | chr3_2:2916486-2916505 | None:intergenic | 60.0% | |
| TGCCGTCGTCTTGATCGCAG+TGG | + | chr3_2:2916860-2916879 | None:intergenic | 60.0% | |
| GGATTGACGCTCGCGTACGG+CGG | - | chr3_2:2915092-2915111 | Msa0391360:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 2914838 | 2918055 | 2914838 | ID=Msa0391360;Name=Msa0391360 |
| chr3_2 | mRNA | 2914838 | 2918055 | 2914838 | ID=Msa0391360-mRNA-1;Parent=Msa0391360;Name=Msa0391360-mRNA-1;_AED=0.00;_eAED=0.00;_QI=154|1|0.75|1|1|1|8|0|377 |
| chr3_2 | exon | 2914838 | 2914946 | 2914838 | ID=Msa0391360-mRNA-1:exon:951;Parent=Msa0391360-mRNA-1 |
| chr3_2 | exon | 2915236 | 2915291 | 2915236 | ID=Msa0391360-mRNA-1:exon:950;Parent=Msa0391360-mRNA-1 |
| chr3_2 | exon | 2915384 | 2915449 | 2915384 | ID=Msa0391360-mRNA-1:exon:949;Parent=Msa0391360-mRNA-1 |
| chr3_2 | exon | 2915576 | 2915821 | 2915576 | ID=Msa0391360-mRNA-1:exon:948;Parent=Msa0391360-mRNA-1 |
| chr3_2 | exon | 2915976 | 2916155 | 2915976 | ID=Msa0391360-mRNA-1:exon:947;Parent=Msa0391360-mRNA-1 |
| chr3_2 | exon | 2916245 | 2916400 | 2916245 | ID=Msa0391360-mRNA-1:exon:946;Parent=Msa0391360-mRNA-1 |
| chr3_2 | exon | 2917036 | 2917159 | 2917036 | ID=Msa0391360-mRNA-1:exon:945;Parent=Msa0391360-mRNA-1 |
| chr3_2 | exon | 2917708 | 2918055 | 2917708 | ID=Msa0391360-mRNA-1:exon:944;Parent=Msa0391360-mRNA-1 |
| chr3_2 | five_prime_UTR | 2917902 | 2918055 | 2917902 | ID=Msa0391360-mRNA-1:five_prime_utr;Parent=Msa0391360-mRNA-1 |
| chr3_2 | CDS | 2917708 | 2917901 | 2917708 | ID=Msa0391360-mRNA-1:cds;Parent=Msa0391360-mRNA-1 |
| chr3_2 | CDS | 2917036 | 2917159 | 2917036 | ID=Msa0391360-mRNA-1:cds;Parent=Msa0391360-mRNA-1 |
| chr3_2 | CDS | 2916245 | 2916400 | 2916245 | ID=Msa0391360-mRNA-1:cds;Parent=Msa0391360-mRNA-1 |
| chr3_2 | CDS | 2915976 | 2916155 | 2915976 | ID=Msa0391360-mRNA-1:cds;Parent=Msa0391360-mRNA-1 |
| chr3_2 | CDS | 2915576 | 2915821 | 2915576 | ID=Msa0391360-mRNA-1:cds;Parent=Msa0391360-mRNA-1 |
| chr3_2 | CDS | 2915384 | 2915449 | 2915384 | ID=Msa0391360-mRNA-1:cds;Parent=Msa0391360-mRNA-1 |
| chr3_2 | CDS | 2915236 | 2915291 | 2915236 | ID=Msa0391360-mRNA-1:cds;Parent=Msa0391360-mRNA-1 |
| chr3_2 | CDS | 2914838 | 2914946 | 2914838 | ID=Msa0391360-mRNA-1:cds;Parent=Msa0391360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
