Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376520 | XP_003602277.1 | 92.788 | 416 | 30 | 0 | 67 | 482 | 1 | 416 | 0.0 | 777 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376520 | G7J7G7 | 92.788 | 416 | 30 | 0 | 67 | 482 | 1 | 416 | 0.0 | 777 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0376520 | Msa0425040 | 0.808674 | 2.758059e-50 | -8.615850e-47 |
| Msa0376520 | Msa0516440 | 0.861978 | 7.016291e-64 | -8.615850e-47 |
| Msa0376520 | Msa0967710 | 0.974094 | 1.484921e-137 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376520 | MtrunA17_Chr3g0127021 | 92.788 | 416 | 30 | 0 | 67 | 482 | 1 | 416 | 0.0 | 777 |
| Msa0376520 | MtrunA17_Chr1g0146861 | 48.731 | 394 | 150 | 12 | 108 | 482 | 42 | 402 | 5.01e-92 | 285 |
| Msa0376520 | MtrunA17_Chr7g0275901 | 33.654 | 416 | 188 | 13 | 94 | 480 | 68 | 424 | 8.30e-57 | 194 |
| Msa0376520 | MtrunA17_Chr8g0346681 | 34.167 | 360 | 178 | 14 | 154 | 482 | 41 | 372 | 5.53e-48 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376520 | AT2G46550.2 | 41.132 | 265 | 116 | 5 | 222 | 478 | 20 | 252 | 6.00e-53 | 179 |
| Msa0376520 | AT2G46550.3 | 41.132 | 265 | 116 | 5 | 222 | 478 | 92 | 324 | 9.85e-52 | 178 |
| Msa0376520 | AT2G46550.1 | 41.132 | 265 | 116 | 5 | 222 | 478 | 160 | 392 | 8.24e-51 | 178 |
| Msa0376520 | AT1G01240.4 | 40.496 | 242 | 112 | 8 | 243 | 480 | 117 | 330 | 3.24e-31 | 123 |
| Msa0376520 | AT1G01240.3 | 40.496 | 242 | 112 | 8 | 243 | 480 | 117 | 330 | 3.24e-31 | 123 |
| Msa0376520 | AT1G01240.1 | 40.496 | 242 | 112 | 8 | 243 | 480 | 117 | 330 | 3.24e-31 | 123 |
| Msa0376520 | AT1G01240.5 | 40.496 | 242 | 112 | 8 | 243 | 480 | 117 | 330 | 3.24e-31 | 123 |
| Msa0376520 | AT1G01240.2 | 40.496 | 242 | 112 | 8 | 243 | 480 | 117 | 330 | 3.24e-31 | 123 |
Find 109 sgRNAs with CRISPR-Local
Find 299 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTGGTGCTGGTTTACTTCT+TGG | 0.202469 | 3_1:+76636184 | Msa0376520:CDS |
| TGCTTCCGTTCCGGCTAATA+TGG | 0.236774 | 3_1:+76632395 | Msa0376520:CDS |
| GTCCTTCTGATCTTTCTTCT+TGG | 0.239340 | 3_1:-76633444 | None:intergenic |
| TTTGACGATCTTTCTTATAT+TGG | 0.255833 | 3_1:+76633299 | Msa0376520:CDS |
| TCAGTCTTGCAGGAATAATT+TGG | 0.259923 | 3_1:-76633206 | None:intergenic |
| ATTCAATTAATGATCAAATT+CGG | 0.272962 | 3_1:+76633090 | Msa0376520:CDS |
| AACAGCCAAATTGAAGAAAA+AGG | 0.277349 | 3_1:-76632715 | None:intergenic |
| TTCTATACTGAATTTCTTGA+TGG | 0.278329 | 3_1:+76633239 | Msa0376520:CDS |
| CTTTGATGTTTCCGATTTCT+CGG | 0.292147 | 3_1:+76633496 | Msa0376520:CDS |
| TCCTTCTGATCTTTCTTCTT+GGG | 0.301671 | 3_1:-76633443 | None:intergenic |
| TTCAATTAATGATCAAATTC+GGG | 0.324422 | 3_1:+76633091 | Msa0376520:CDS |
| CAGGATTTATTTGAGAATCT+TGG | 0.328624 | 3_1:-76635814 | None:intergenic |
| GATATGCTCCTTCTCGTTGT+AGG | 0.329509 | 3_1:-76635921 | None:intergenic |
| GGCAGAAATCTCAATAAAAC+AGG | 0.330422 | 3_1:-76632665 | None:intergenic |
| GCAGTGGGTTTAAGCCTTGC+TGG | 0.332793 | 3_1:+76636166 | Msa0376520:CDS |
| TATTGGAAGTGATAATTTAT+CGG | 0.333273 | 3_1:+76633316 | Msa0376520:CDS |
| TCCGGCCAGAGCAAAGATTC+TGG | 0.344971 | 3_1:+76635782 | Msa0376520:CDS |
| GGAACCAAGCTCAGTCTTGC+AGG | 0.347496 | 3_1:-76633216 | None:intergenic |
| CTTATCAGAATTTCGATTAC+CGG | 0.352732 | 3_1:-76633132 | None:intergenic |
| ATCAAGAAATTCAGTATAGA+AGG | 0.366041 | 3_1:-76633237 | None:intergenic |
| GATGTCATTATTTACATTGA+AGG | 0.367238 | 3_1:-76636229 | None:intergenic |
| TGTAGCCACCATTTCATATC+TGG | 0.379942 | 3_1:-76633158 | None:intergenic |
| ACCCACCACAATCCACTTCC+TGG | 0.385800 | 3_1:-76636591 | None:intergenic |
| GGTTTAAGCCTTGCTGGTGC+TGG | 0.404695 | 3_1:+76636172 | Msa0376520:CDS |
| AGAGGAATATTTACAAATGA+TGG | 0.406846 | 3_1:-76636374 | None:intergenic |
| TCTCTCTTATGCTTCCGTTC+CGG | 0.408909 | 3_1:+76632386 | Msa0376520:exon |
| TCTGGAACAACGCCTACTTC+TGG | 0.411020 | 3_1:+76633773 | Msa0376520:CDS |
| CTTGATGGAAATGTCAAGAA+TGG | 0.416125 | 3_1:+76633254 | Msa0376520:CDS |
| TTGATGGAAATGTCAAGAAT+GGG | 0.419864 | 3_1:+76633255 | Msa0376520:CDS |
| AATGCCGCTGGTTATGCATC+TGG | 0.421397 | 3_1:+76633755 | Msa0376520:CDS |
| GTGCTGGTTTACTTCTTGGT+TGG | 0.423182 | 3_1:+76636188 | Msa0376520:CDS |
| TCAATGTAAATAATGACATC+TGG | 0.424818 | 3_1:+76636232 | Msa0376520:exon |
| GGGCCTTGGTGGCGCACTGC+TGG | 0.425344 | 3_1:+76633563 | Msa0376520:CDS |
| TCAGTAATGCTGCTGTTCTC+AGG | 0.434062 | 3_1:-76635833 | None:intergenic |
| GCTTCCGTTCCGGCTAATAT+GGG | 0.437335 | 3_1:+76632396 | Msa0376520:CDS |
| AGCAGTGCGCCACCAAGGCC+CGG | 0.441562 | 3_1:-76633561 | None:intergenic |
| TTACTTCTTGGTTGGACCAT+GGG | 0.448358 | 3_1:+76636196 | Msa0376520:CDS |
| ACTTCTTGATCTTCAAGTAA+TGG | 0.455166 | 3_1:-76633014 | None:intergenic |
| ATAAGCTACCAGATATGAAA+TGG | 0.460867 | 3_1:+76633150 | Msa0376520:CDS |
| TATTCCTGCAAGACTGAGCT+TGG | 0.462198 | 3_1:+76633212 | Msa0376520:CDS |
| AAACGCTTAGGCTGAGGATG+AGG | 0.466545 | 3_1:-76633650 | None:intergenic |
| GAAGAAAGATCAGAAGGACT+TGG | 0.467901 | 3_1:+76633448 | Msa0376520:CDS |
| AGATGCATAACCAGCGGCAT+TGG | 0.468321 | 3_1:-76633753 | None:intergenic |
| GAAATGAGAAACCCGGGCCT+TGG | 0.472773 | 3_1:+76633549 | Msa0376520:CDS |
| TTTACTTCTTGGTTGGACCA+TGG | 0.487875 | 3_1:+76636195 | Msa0376520:CDS |
| ACCAGAATCTTTGCTCTGGC+CGG | 0.490478 | 3_1:-76635783 | None:intergenic |
| AAGTGGATTGTGGTGGGTGC+AGG | 0.490506 | 3_1:+76636596 | Msa0376520:three_prime_UTR |
| CTGGATTCAGACATTGACTA+AGG | 0.490930 | 3_1:+76636251 | Msa0376520:three_prime_UTR |
| GCGGATTCAGTCTGCATGCC+CGG | 0.491743 | 3_1:+76633113 | Msa0376520:CDS |
| ATGAGAAACCCGGGCCTTGG+TGG | 0.493894 | 3_1:+76633552 | Msa0376520:CDS |
| CACTGCTGGTAAAGATGAGT+TGG | 0.498893 | 3_1:+76633577 | Msa0376520:CDS |
| TTCTTGGTTGGACCATGGGA+TGG | 0.500107 | 3_1:+76636200 | Msa0376520:CDS |
| TGATCATTAATTGAATTGCT+AGG | 0.503875 | 3_1:-76633083 | None:intergenic |
| CTCCTGCAAAAGTATGCGAC+AGG | 0.504632 | 3_1:+76632328 | None:intergenic |
| TCAAAAGAGTGTATATATGA+TGG | 0.512014 | 3_1:+76636333 | Msa0376520:three_prime_UTR |
| TGTTTCTAAGTTGAAGGCAG+AGG | 0.515040 | 3_1:-76636018 | None:intergenic |
| CTAACGGTTCTTAACAAAAG+AGG | 0.521804 | 3_1:-76636392 | None:intergenic |
| GTGTACATAAGAGCAGTGTT+TGG | 0.523736 | 3_1:-76632686 | None:intergenic |
| TTAAACCAGAAAACTGAGAC+TGG | 0.528983 | 3_1:+76633725 | Msa0376520:CDS |
| AATGATGGAAATTGAACCAA+TGG | 0.530908 | 3_1:-76636359 | None:intergenic |
| GTAAACCAGAATCTTTGCTC+TGG | 0.535966 | 3_1:-76635787 | None:intergenic |
| ACTGGTTCTTCCAATGCCGC+TGG | 0.541532 | 3_1:+76633743 | Msa0376520:CDS |
| GCTACATGTGAAAAGCAACT+TGG | 0.542418 | 3_1:+76633175 | Msa0376520:CDS |
| TCTCAAGGAAGTGAACAGTC+AGG | 0.543414 | 3_1:-76636499 | None:intergenic |
| AATCTCTGATCAAAACGCTT+AGG | 0.546921 | 3_1:-76633662 | None:intergenic |
| TTATCAGAATTTCGATTACC+GGG | 0.547283 | 3_1:-76633131 | None:intergenic |
| CAGTTATAGAGACCAGGAAG+TGG | 0.549531 | 3_1:+76636579 | Msa0376520:three_prime_UTR |
| GCAGTGCGCCACCAAGGCCC+GGG | 0.550264 | 3_1:-76633560 | None:intergenic |
| ACTTGAAGATCAAGAAGTAA+TGG | 0.550322 | 3_1:+76633019 | Msa0376520:CDS |
| AAATATATACATACAACTAA+CGG | 0.551075 | 3_1:-76636408 | None:intergenic |
| AAGAAAGATCAGAAGGACTT+GGG | 0.556919 | 3_1:+76633449 | Msa0376520:CDS |
| TGAAAAGAACAGCCAGAAGT+AGG | 0.557563 | 3_1:-76633785 | None:intergenic |
| GAATGGTATCCCATATTAGC+CGG | 0.557627 | 3_1:-76632405 | None:intergenic |
| ATTATATACAAAGCCTTGCA+TGG | 0.562366 | 3_1:-76636471 | None:intergenic |
| TTCTCAAACAAGAGCAAGAG+AGG | 0.562960 | 3_1:+76635877 | Msa0376520:CDS |
| TGATCAAAACGCTTAGGCTG+AGG | 0.573801 | 3_1:-76633656 | None:intergenic |
| TTTGATCAGAGATTCTCAAA+GGG | 0.576152 | 3_1:+76633671 | Msa0376520:CDS |
| AACGCTTAGGCTGAGGATGA+GGG | 0.577084 | 3_1:-76633649 | None:intergenic |
| GTATATATGATGGTATCCAT+TGG | 0.579504 | 3_1:+76636343 | Msa0376520:three_prime_UTR |
| TCCCAAGAAGAAAGATCAGA+AGG | 0.581602 | 3_1:+76633442 | Msa0376520:CDS |
| TGCTAAATCTCTTTCCACAC+TGG | 0.583299 | 3_1:+76636053 | Msa0376520:CDS |
| TGTGTGATGTTTGCCATGCA+AGG | 0.583928 | 3_1:+76636458 | Msa0376520:three_prime_UTR |
| TGCCTTGCTAAATTGAGATG+TGG | 0.591531 | 3_1:-76632427 | None:intergenic |
| AACAGATCTCTGAGCAACAA+AGG | 0.593658 | 3_1:-76633603 | None:intergenic |
| AAAACGGCATCACATTTGAT+GGG | 0.595069 | 3_1:+76633527 | Msa0376520:CDS |
| TTCCACATCTCAATTTAGCA+AGG | 0.602016 | 3_1:+76632425 | Msa0376520:CDS |
| TCTGAGTTCTGAATTAAGCA+AGG | 0.603883 | 3_1:+76632456 | Msa0376520:CDS |
| AGAGACCAGGAAGTGGATTG+TGG | 0.610782 | 3_1:+76636586 | Msa0376520:three_prime_UTR |
| TTACCAGCAGTGCGCCACCA+AGG | 0.611001 | 3_1:-76633566 | None:intergenic |
| AAATTGCAGTTATAGAGACC+AGG | 0.613822 | 3_1:+76636573 | Msa0376520:three_prime_UTR |
| TCAAGTTGCATTCGCCAGTG+TGG | 0.614289 | 3_1:-76636067 | None:intergenic |
| TGATGGGAAATGAGAAACCC+GGG | 0.619313 | 3_1:+76633543 | Msa0376520:CDS |
| TGCTAAATTGAGATGTGGAA+TGG | 0.620674 | 3_1:-76632422 | None:intergenic |
| GTATCCCATATTAGCCGGAA+CGG | 0.620962 | 3_1:-76632400 | None:intergenic |
| TTGATGGGAAATGAGAAACC+CGG | 0.621036 | 3_1:+76633542 | Msa0376520:CDS |
| GCAAGAAGCCTACAACGAGA+AGG | 0.635494 | 3_1:+76635913 | Msa0376520:CDS |
| GAAGTAAACCAGCACCAGCA+AGG | 0.638132 | 3_1:-76636180 | None:intergenic |
| AGCTACCAGATATGAAATGG+TGG | 0.640041 | 3_1:+76633153 | Msa0376520:CDS |
| TGATGGAAATGTCAAGAATG+GGG | 0.645416 | 3_1:+76633256 | Msa0376520:CDS |
| TGAAGGAAACATCCATCCCA+TGG | 0.646722 | 3_1:-76636212 | None:intergenic |
| AACTCTTTGCATACAAACAG+TGG | 0.649203 | 3_1:+76635972 | Msa0376520:CDS |
| AATTAATGATCAAATTCGGG+CGG | 0.649669 | 3_1:+76633094 | Msa0376520:CDS |
| TGTGGAAAGAGATTTAGCAA+TGG | 0.650005 | 3_1:-76636049 | None:intergenic |
| GACCAGGAAGTGGATTGTGG+TGG | 0.654052 | 3_1:+76636589 | Msa0376520:three_prime_UTR |
| ACCAGGAAGTGGATTGTGGT+GGG | 0.666144 | 3_1:+76636590 | Msa0376520:three_prime_UTR |
| TGTTCCAGATGCATAACCAG+CGG | 0.695980 | 3_1:-76633759 | None:intergenic |
| GCAGAAATCTCAATAAAACA+GGG | 0.713980 | 3_1:-76632664 | None:intergenic |
| TCCTGCAAAAGTATGCGACA+GGG | 0.714077 | 3_1:+76632329 | None:intergenic |
| GTAGTAGGAGAGACATGATG+TGG | 0.764403 | 3_1:-76633347 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAATACAATTTACAA+TGG | - | chr3_1:76632617-76632636 | None:intergenic | 10.0% |
| !!! | AACTGTTTTTTATATTAATT+AGG | + | chr3_1:76632991-76633010 | Msa0376520:intron | 10.0% |
| !!! | ATATAAAAAACAGTTTTCTA+TGG | - | chr3_1:76632986-76633005 | None:intergenic | 15.0% |
| !! | ATTCAATTAATGATCAAATT+CGG | + | chr3_1:76633090-76633109 | Msa0376520:CDS | 15.0% |
| !! | AAATATATACATACAACTAA+CGG | - | chr3_1:76636411-76636430 | None:intergenic | 15.0% |
| !!! | GATGATGATGATTAAATTAA+AGG | - | chr3_1:76632503-76632522 | None:intergenic | 20.0% |
| !!! | TTATTAATTATTTCTGTAGC+TGG | + | chr3_1:76632771-76632790 | Msa0376520:intron | 20.0% |
| !!! | ATACTAATTTTTTTGGAATC+TGG | - | chr3_1:76633052-76633071 | None:intergenic | 20.0% |
| !!! | CAATCAGATACTAATTTTTT+TGG | - | chr3_1:76633059-76633078 | None:intergenic | 20.0% |
| !! | CAAAAAAATTAGTATCTGAT+TGG | + | chr3_1:76633057-76633076 | Msa0376520:CDS | 20.0% |
| !! | TTCAATTAATGATCAAATTC+GGG | + | chr3_1:76633091-76633110 | Msa0376520:CDS | 20.0% |
| !! | TATTGGAAGTGATAATTTAT+CGG | + | chr3_1:76633316-76633335 | Msa0376520:CDS | 20.0% |
| !! | TGTTTAACTGAATTTCTTTA+CGG | + | chr3_1:76633833-76633852 | Msa0376520:intron | 20.0% |
| !! | TTTAAATTATAAAACTGCCA+AGG | + | chr3_1:76633925-76633944 | Msa0376520:intron | 20.0% |
| !!! | TTCATAATTACTAGTTTGAA+TGG | + | chr3_1:76634112-76634131 | Msa0376520:intron | 20.0% |
| !!! | TCATAATTACTAGTTTGAAT+GGG | + | chr3_1:76634113-76634132 | Msa0376520:intron | 20.0% |
| !!! | TAATTTTAAATGTATAGAGC+TGG | + | chr3_1:76634379-76634398 | Msa0376520:intron | 20.0% |
| !!! | GTGAGTTTTTCTAAATTTTA+AGG | + | chr3_1:76634451-76634470 | Msa0376520:intron | 20.0% |
| !! | AACTAAAACTAGTGTAATAT+TGG | - | chr3_1:76634625-76634644 | None:intergenic | 20.0% |
| !! | TATAACGATTTATATCAACT+GGG | - | chr3_1:76634819-76634838 | None:intergenic | 20.0% |
| !!! | CTGTTCTTTTATAAAAGAAA+TGG | - | chr3_1:76635014-76635033 | None:intergenic | 20.0% |
| !! | AAATAAAAGAAAACAGGTAA+GGG | - | chr3_1:76635229-76635248 | None:intergenic | 20.0% |
| !! | TAAATAAAAGAAAACAGGTA+AGG | - | chr3_1:76635230-76635249 | None:intergenic | 20.0% |
| !! | TAAATATTCAAATCGTGATT+TGG | - | chr3_1:76635321-76635340 | None:intergenic | 20.0% |
| !! | ATCATTTCTATATGTTAAAG+AGG | + | chr3_1:76635508-76635527 | Msa0376520:intron | 20.0% |
| !! | AATTAAGAAACAATGTTGAT+AGG | - | chr3_1:76635656-76635675 | None:intergenic | 20.0% |
| !!! | AAATTTAAGTTAGCATAATC+AGG | - | chr3_1:76635730-76635749 | None:intergenic | 20.0% |
| !! | AAATTTATTGTCAAACTATG+TGG | + | chr3_1:76635744-76635763 | Msa0376520:intron | 20.0% |
| !! | AAGATCAATAACAAAAAATG+TGG | + | chr3_1:76636118-76636137 | Msa0376520:CDS | 20.0% |
| !! | AGATCAATAACAAAAAATGT+GGG | + | chr3_1:76636119-76636138 | Msa0376520:CDS | 20.0% |
| !!! | AAAAATGCAAAATTTTCTCA+AGG | - | chr3_1:76636517-76636536 | None:intergenic | 20.0% |
| !!! | GAGAAAATTTTGCATTTTTT+AGG | + | chr3_1:76636518-76636537 | Msa0376520:three_prime_UTR | 20.0% |
| ! | TGATCATTAATTGAATTGCT+AGG | - | chr3_1:76633086-76633105 | None:intergenic | 25.0% |
| ! | ATCAAGAAATTCAGTATAGA+AGG | - | chr3_1:76633240-76633259 | None:intergenic | 25.0% |
| ! | TTCTATACTGAATTTCTTGA+TGG | + | chr3_1:76633239-76633258 | Msa0376520:CDS | 25.0% |
| ! | TTTGACGATCTTTCTTATAT+TGG | + | chr3_1:76633299-76633318 | Msa0376520:CDS | 25.0% |
| !!! | TTGTTTTTCATACATGTAGT+AGG | - | chr3_1:76633365-76633384 | None:intergenic | 25.0% |
| !!! | ATTTTCAGATGTTGGTTTTT+TGG | + | chr3_1:76633472-76633491 | Msa0376520:CDS | 25.0% |
| ! | TCAAACTAGTAATTATGAAG+AGG | - | chr3_1:76634111-76634130 | None:intergenic | 25.0% |
| ! | ATTCAAAAACACATAACAGT+TGG | - | chr3_1:76634218-76634237 | None:intergenic | 25.0% |
| ! | TAAAATTAAGTCTGTCAACA+AGG | - | chr3_1:76634367-76634386 | None:intergenic | 25.0% |
| ! | AAGGAAAAACATATCTTTCA+AGG | - | chr3_1:76634517-76634536 | None:intergenic | 25.0% |
| ! | TAAGAATATCTTATCTCATG+GGG | - | chr3_1:76634563-76634582 | None:intergenic | 25.0% |
| ! | CTAAGAATATCTTATCTCAT+GGG | - | chr3_1:76634564-76634583 | None:intergenic | 25.0% |
| ! | ACTAAGAATATCTTATCTCA+TGG | - | chr3_1:76634565-76634584 | None:intergenic | 25.0% |
| ! | AGATAAGATATTCTTAGTCA+TGG | + | chr3_1:76634567-76634586 | Msa0376520:intron | 25.0% |
| ! | GCATACAAAATGCAATTTAA+AGG | - | chr3_1:76634653-76634672 | None:intergenic | 25.0% |
| ! | GTATAACGATTTATATCAAC+TGG | - | chr3_1:76634820-76634839 | None:intergenic | 25.0% |
| ! | AGCAGTAAATAAAAGAAAAC+AGG | - | chr3_1:76635235-76635254 | None:intergenic | 25.0% |
| !! | AGATGAGGCATTAATATAAT+GGG | + | chr3_1:76635448-76635467 | Msa0376520:intron | 25.0% |
| ! | ATTTCTATATGTTAAAGAGG+TGG | + | chr3_1:76635511-76635530 | Msa0376520:intron | 25.0% |
| ! | TTTCTATATGTTAAAGAGGT+GGG | + | chr3_1:76635512-76635531 | Msa0376520:intron | 25.0% |
| ! | TAGTCATTTCTATATGCTAA+AGG | + | chr3_1:76635576-76635595 | Msa0376520:intron | 25.0% |
| ! | GATATTAATGGTGAAAACAA+TGG | - | chr3_1:76635610-76635629 | None:intergenic | 25.0% |
| ! | AGTGAACTAGATGATATTAA+TGG | - | chr3_1:76635622-76635641 | None:intergenic | 25.0% |
| !! | ATTAATATCATCTAGTTCAC+TGG | + | chr3_1:76635621-76635640 | Msa0376520:intron | 25.0% |
| !!! | TGTTTTTGTTTCTAAGTTGA+AGG | - | chr3_1:76636027-76636046 | None:intergenic | 25.0% |
| ! | AATAACAAAAAATGTGGGAT+TGG | + | chr3_1:76636124-76636143 | Msa0376520:CDS | 25.0% |
| ! | GATGTCATTATTTACATTGA+AGG | - | chr3_1:76636232-76636251 | None:intergenic | 25.0% |
| ! | TCAATGTAAATAATGACATC+TGG | + | chr3_1:76636232-76636251 | Msa0376520:exon | 25.0% |
| !! | TCAAAAGAGTGTATATATGA+TGG | + | chr3_1:76636333-76636352 | Msa0376520:three_prime_UTR | 25.0% |
| ! | AGAGGAATATTTACAAATGA+TGG | - | chr3_1:76636377-76636396 | None:intergenic | 25.0% |
| !!! | TGTTTTTCTAAAGTCTACTC+TGG | + | chr3_1:76632640-76632659 | Msa0376520:intron | 30.0% |
| GCAGAAATCTCAATAAAACA+GGG | - | chr3_1:76632667-76632686 | None:intergenic | 30.0% | |
| AACAGCCAAATTGAAGAAAA+AGG | - | chr3_1:76632718-76632737 | None:intergenic | 30.0% | |
| !! | TTCTTCAATTTGGCTGTTTT+AGG | + | chr3_1:76632720-76632739 | Msa0376520:CDS | 30.0% |
| !! | GCTGTTTTAGGTAATGAATT+TGG | + | chr3_1:76632732-76632751 | Msa0376520:intron | 30.0% |
| !! | TAATTATTTCTGTAGCTGGA+AGG | + | chr3_1:76632775-76632794 | Msa0376520:intron | 30.0% |
| GTGAATGATAGTACTAATGA+TGG | - | chr3_1:76632851-76632870 | None:intergenic | 30.0% | |
| ACTTCTTGATCTTCAAGTAA+TGG | - | chr3_1:76633017-76633036 | None:intergenic | 30.0% | |
| ACTTGAAGATCAAGAAGTAA+TGG | + | chr3_1:76633019-76633038 | Msa0376520:CDS | 30.0% | |
| AATTAATGATCAAATTCGGG+CGG | + | chr3_1:76633094-76633113 | Msa0376520:CDS | 30.0% | |
| TTATCAGAATTTCGATTACC+GGG | - | chr3_1:76633134-76633153 | None:intergenic | 30.0% | |
| CTTATCAGAATTTCGATTAC+CGG | - | chr3_1:76633135-76633154 | None:intergenic | 30.0% | |
| ATAAGCTACCAGATATGAAA+TGG | + | chr3_1:76633150-76633169 | Msa0376520:CDS | 30.0% | |
| TTGATGGAAATGTCAAGAAT+GGG | + | chr3_1:76633255-76633274 | Msa0376520:CDS | 30.0% | |
| ! | TTTTGATCAGAGATTCTCAA+AGG | + | chr3_1:76633670-76633689 | Msa0376520:CDS | 30.0% |
| TTTGATCAGAGATTCTCAAA+GGG | + | chr3_1:76633671-76633690 | Msa0376520:CDS | 30.0% | |
| !!! | GTTTTCTGGTTTAAAGATGA+TGG | - | chr3_1:76633719-76633738 | None:intergenic | 30.0% |
| AGGATTCAAAAAGTCATTTC+AGG | + | chr3_1:76633807-76633826 | Msa0376520:CDS | 30.0% | |
| TCCTAATTAAATGACCATGA+AGG | - | chr3_1:76633884-76633903 | None:intergenic | 30.0% | |
| TTATTCCATTGTTCATGAGA+CGG | + | chr3_1:76633979-76633998 | Msa0376520:intron | 30.0% | |
| !!! | GGTGCTTATTTTTTAAAGCT+TGG | + | chr3_1:76634000-76634019 | Msa0376520:intron | 30.0% |
| ! | TTGAAGATAGCTAGCTTATT+TGG | - | chr3_1:76634070-76634089 | None:intergenic | 30.0% |
| AGCTATCTTCAAGTAATATG+AGG | + | chr3_1:76634078-76634097 | Msa0376520:intron | 30.0% | |
| AACTAGTAATTATGAAGAGG+CGG | - | chr3_1:76634108-76634127 | None:intergenic | 30.0% | |
| !!! | CTTTTTTATACCTCAGTACT+GGG | + | chr3_1:76634155-76634174 | Msa0376520:intron | 30.0% |
| !!! | TTTTTTATACCTCAGTACTG+GGG | + | chr3_1:76634156-76634175 | Msa0376520:intron | 30.0% |
| !! | TGTTTTTGAATTCCCATGAT+AGG | + | chr3_1:76634227-76634246 | Msa0376520:intron | 30.0% |
| ! | ATCCAACAAAATTAACTTGG+TGG | - | chr3_1:76634342-76634361 | None:intergenic | 30.0% |
| GAGATCCAACAAAATTAACT+TGG | - | chr3_1:76634345-76634364 | None:intergenic | 30.0% | |
| AAGAATATCTTATCTCATGG+GGG | - | chr3_1:76634562-76634581 | None:intergenic | 30.0% | |
| TTATGTTTCAGACGCTTATA+TGG | + | chr3_1:76634710-76634729 | Msa0376520:intron | 30.0% | |
| ATCGTTATACGTATCTATTC+TGG | + | chr3_1:76634830-76634849 | Msa0376520:intron | 30.0% | |
| AAAATGAATTGAGATTCCTG+CGG | - | chr3_1:76634866-76634885 | None:intergenic | 30.0% | |
| TATGAATAGTGTGATTCAGA+GGG | - | chr3_1:76634913-76634932 | None:intergenic | 30.0% | |
| ATATGAATAGTGTGATTCAG+AGG | - | chr3_1:76634914-76634933 | None:intergenic | 30.0% | |
| CTTCAATGATGATTCTATCT+TGG | - | chr3_1:76635058-76635077 | None:intergenic | 30.0% | |
| !! | CTGAATTTTGACAAACTGAA+CGG | - | chr3_1:76635365-76635384 | None:intergenic | 30.0% |
| ! | AAACATTGATGACATTTGAC+AGG | + | chr3_1:76635395-76635414 | Msa0376520:intron | 30.0% |
| ! | GAGATGAGGCATTAATATAA+TGG | + | chr3_1:76635447-76635466 | Msa0376520:intron | 30.0% |
| ! | AGGCATTAATATAATGGGAT+AGG | + | chr3_1:76635453-76635472 | Msa0376520:intron | 30.0% |
| CAGGATTTATTTGAGAATCT+TGG | - | chr3_1:76635817-76635836 | None:intergenic | 30.0% | |
| ! | CATGAGTCTTTTCTTTAAAC+AGG | + | chr3_1:76635943-76635962 | Msa0376520:CDS | 30.0% |
| GTATATATGATGGTATCCAT+TGG | + | chr3_1:76636343-76636362 | Msa0376520:three_prime_UTR | 30.0% | |
| ! | AATGATGGAAATTGAACCAA+TGG | - | chr3_1:76636362-76636381 | None:intergenic | 30.0% |
| ATTATATACAAAGCCTTGCA+TGG | - | chr3_1:76636474-76636493 | None:intergenic | 30.0% | |
| TGCTAAATTGAGATGTGGAA+TGG | - | chr3_1:76632425-76632444 | None:intergenic | 35.0% | |
| TTCCACATCTCAATTTAGCA+AGG | + | chr3_1:76632425-76632444 | Msa0376520:CDS | 35.0% | |
| !! | TCTGAGTTCTGAATTAAGCA+AGG | + | chr3_1:76632456-76632475 | Msa0376520:CDS | 35.0% |
| TTAAATTAAAGGCGACACAC+AGG | - | chr3_1:76632492-76632511 | None:intergenic | 35.0% | |
| AATGGTTCTTCATGCATGTT+TGG | - | chr3_1:76632599-76632618 | None:intergenic | 35.0% | |
| GGCAGAAATCTCAATAAAAC+AGG | - | chr3_1:76632668-76632687 | None:intergenic | 35.0% | |
| CCAAATTGAAGAAAAAGGAG+TGG | - | chr3_1:76632713-76632732 | None:intergenic | 35.0% | |
| ! | CCACTCCTTTTTCTTCAATT+TGG | + | chr3_1:76632710-76632729 | Msa0376520:CDS | 35.0% |
| !!! | GAATTTGGCAGTTTTAAGTC+AGG | + | chr3_1:76632747-76632766 | Msa0376520:intron | 35.0% |
| TCTAACTGAGTTCAGTTCAT+TGG | + | chr3_1:76632929-76632948 | Msa0376520:intron | 35.0% | |
| TCAGTCTTGCAGGAATAATT+TGG | - | chr3_1:76633209-76633228 | None:intergenic | 35.0% | |
| CTTGATGGAAATGTCAAGAA+TGG | + | chr3_1:76633254-76633273 | Msa0376520:CDS | 35.0% | |
| TGATGGAAATGTCAAGAATG+GGG | + | chr3_1:76633256-76633275 | Msa0376520:CDS | 35.0% | |
| TCCTTCTGATCTTTCTTCTT+GGG | - | chr3_1:76633446-76633465 | None:intergenic | 35.0% | |
| AAGAAAGATCAGAAGGACTT+GGG | + | chr3_1:76633449-76633468 | Msa0376520:CDS | 35.0% | |
| CTTTGATGTTTCCGATTTCT+CGG | + | chr3_1:76633496-76633515 | Msa0376520:CDS | 35.0% | |
| !!! | TTTTTCTGAGACCGAGAAAT+CGG | - | chr3_1:76633510-76633529 | None:intergenic | 35.0% |
| TTTCTCGGTCTCAGAAAAAA+CGG | + | chr3_1:76633511-76633530 | Msa0376520:CDS | 35.0% | |
| AAAAACGGCATCACATTTGA+TGG | + | chr3_1:76633526-76633545 | Msa0376520:CDS | 35.0% | |
| AAAACGGCATCACATTTGAT+GGG | + | chr3_1:76633527-76633546 | Msa0376520:CDS | 35.0% | |
| AATCTCTGATCAAAACGCTT+AGG | - | chr3_1:76633665-76633684 | None:intergenic | 35.0% | |
| TTAAACCAGAAAACTGAGAC+TGG | + | chr3_1:76633725-76633744 | Msa0376520:CDS | 35.0% | |
| ! | CCATGAAGGCATATATTACA+GGG | - | chr3_1:76633870-76633889 | None:intergenic | 35.0% |
| ! | ACCATGAAGGCATATATTAC+AGG | - | chr3_1:76633871-76633890 | None:intergenic | 35.0% |
| GCCTTCATGGTCATTTAATT+AGG | + | chr3_1:76633880-76633899 | Msa0376520:intron | 35.0% | |
| GAAGTTGAAGTATGGAACAT+TGG | - | chr3_1:76634043-76634062 | None:intergenic | 35.0% | |
| !! | TTGGCTTTGAAGTTGAAGTA+TGG | - | chr3_1:76634051-76634070 | None:intergenic | 35.0% |
| ACTAGTAATTATGAAGAGGC+GGG | - | chr3_1:76634107-76634126 | None:intergenic | 35.0% | |
| ! | CCAGTACTGAGGTATAAAAA+AGG | - | chr3_1:76634157-76634176 | None:intergenic | 35.0% |
| !!! | CCTTTTTTATACCTCAGTAC+TGG | + | chr3_1:76634154-76634173 | Msa0376520:intron | 35.0% |
| ATAACAGTTGGCTAAGTGAT+GGG | - | chr3_1:76634206-76634225 | None:intergenic | 35.0% | |
| AAATTCAGACCACCATTAAG+TGG | + | chr3_1:76634263-76634282 | Msa0376520:intron | 35.0% | |
| AATTCAGACCACCATTAAGT+GGG | + | chr3_1:76634264-76634283 | Msa0376520:intron | 35.0% | |
| ACCCAGGATAAGGATATTTA+TGG | + | chr3_1:76634314-76634333 | Msa0376520:intron | 35.0% | |
| CCCATAAATATCCTTATCCT+GGG | - | chr3_1:76634318-76634337 | None:intergenic | 35.0% | |
| CCCAGGATAAGGATATTTAT+GGG | + | chr3_1:76634315-76634334 | Msa0376520:intron | 35.0% | |
| CCAGGATAAGGATATTTATG+GGG | + | chr3_1:76634316-76634335 | Msa0376520:intron | 35.0% | |
| GCATATAATGAGAAGAGAGT+GGG | - | chr3_1:76634487-76634506 | None:intergenic | 35.0% | |
| AGCATATAATGAGAAGAGAG+TGG | - | chr3_1:76634488-76634507 | None:intergenic | 35.0% | |
| AGAATATCTTATCTCATGGG+GGG | - | chr3_1:76634561-76634580 | None:intergenic | 35.0% | |
| AGTGTAATATTGGAGAACAG+TGG | - | chr3_1:76634615-76634634 | None:intergenic | 35.0% | |
| TTCATATTCTGCTGTATGTG+CGG | + | chr3_1:76634927-76634946 | Msa0376520:intron | 35.0% | |
| ! | TAACATGCCTTTAAGAAACC+AGG | - | chr3_1:76634978-76634997 | None:intergenic | 35.0% |
| GGAAAAAAACACTGTAGGAA+GGG | - | chr3_1:76635106-76635125 | None:intergenic | 35.0% | |
| TGCAAAACACTGTTTAGACA+GGG | - | chr3_1:76635131-76635150 | None:intergenic | 35.0% | |
| AACAAGATAAGGCGACTAAA+GGG | - | chr3_1:76635183-76635202 | None:intergenic | 35.0% | |
| AAACAAGATAAGGCGACTAA+AGG | - | chr3_1:76635184-76635203 | None:intergenic | 35.0% | |
| CACCATCTTCAAACAAGATA+AGG | - | chr3_1:76635194-76635213 | None:intergenic | 35.0% | |
| !! | CGCTTATTTTCTTCGATCTA+CGG | + | chr3_1:76635278-76635297 | Msa0376520:intron | 35.0% |
| ! | ATTTTCTTCGATCTACGGTT+TGG | + | chr3_1:76635283-76635302 | Msa0376520:intron | 35.0% |
| AATAGAGGGAAACAGTTAGA+AGG | + | chr3_1:76635425-76635444 | Msa0376520:intron | 35.0% | |
| AACTCTTTGCATACAAACAG+TGG | + | chr3_1:76635972-76635991 | Msa0376520:CDS | 35.0% | |
| TGTGGAAAGAGATTTAGCAA+TGG | - | chr3_1:76636052-76636071 | None:intergenic | 35.0% | |
| CTAACGGTTCTTAACAAAAG+AGG | - | chr3_1:76636395-76636414 | None:intergenic | 35.0% | |
| AAATTGCAGTTATAGAGACC+AGG | + | chr3_1:76636573-76636592 | Msa0376520:three_prime_UTR | 35.0% | |
| GAATGGTATCCCATATTAGC+CGG | - | chr3_1:76632408-76632427 | None:intergenic | 40.0% | |
| TGCCTTGCTAAATTGAGATG+TGG | - | chr3_1:76632430-76632449 | None:intergenic | 40.0% | |
| GTGTACATAAGAGCAGTGTT+TGG | - | chr3_1:76632689-76632708 | None:intergenic | 40.0% | |
| AGCTACCAGATATGAAATGG+TGG | + | chr3_1:76633153-76633172 | Msa0376520:CDS | 40.0% | |
| TGTAGCCACCATTTCATATC+TGG | - | chr3_1:76633161-76633180 | None:intergenic | 40.0% | |
| GCTACATGTGAAAAGCAACT+TGG | + | chr3_1:76633175-76633194 | Msa0376520:CDS | 40.0% | |
| TGCCAGAATGCGAAAAATTG+AGG | + | chr3_1:76633391-76633410 | Msa0376520:CDS | 40.0% | |
| ! | AGCCTCAATTTTTCGCATTC+TGG | - | chr3_1:76633396-76633415 | None:intergenic | 40.0% |
| TCCCAAGAAGAAAGATCAGA+AGG | + | chr3_1:76633442-76633461 | Msa0376520:CDS | 40.0% | |
| GTCCTTCTGATCTTTCTTCT+TGG | - | chr3_1:76633447-76633466 | None:intergenic | 40.0% | |
| GAAGAAAGATCAGAAGGACT+TGG | + | chr3_1:76633448-76633467 | Msa0376520:CDS | 40.0% | |
| ! | GACTTGGGATTTTCAGATGT+TGG | + | chr3_1:76633464-76633483 | Msa0376520:CDS | 40.0% |
| TTGATGGGAAATGAGAAACC+CGG | + | chr3_1:76633542-76633561 | Msa0376520:CDS | 40.0% | |
| AACAGATCTCTGAGCAACAA+AGG | - | chr3_1:76633606-76633625 | None:intergenic | 40.0% | |
| ! | AAGAACCAGTCTCAGTTTTC+TGG | - | chr3_1:76633733-76633752 | None:intergenic | 40.0% |
| TGAAAAGAACAGCCAGAAGT+AGG | - | chr3_1:76633788-76633807 | None:intergenic | 40.0% | |
| !! | TACTTCTGGCTGTTCTTTTC+AGG | + | chr3_1:76633787-76633806 | Msa0376520:CDS | 40.0% |
| CCCTGTAATATATGCCTTCA+TGG | + | chr3_1:76633867-76633886 | Msa0376520:intron | 40.0% | |
| TGTGAAACTTGTCTACGTCT+CGG | + | chr3_1:76633952-76633971 | Msa0376520:intron | 40.0% | |
| CATAACAGTTGGCTAAGTGA+TGG | - | chr3_1:76634207-76634226 | None:intergenic | 40.0% | |
| CGACAACTTTCTCCTATCAT+GGG | - | chr3_1:76634242-76634261 | None:intergenic | 40.0% | |
| ACGACAACTTTCTCCTATCA+TGG | - | chr3_1:76634243-76634262 | None:intergenic | 40.0% | |
| CCCCATAAATATCCTTATCC+TGG | - | chr3_1:76634319-76634338 | None:intergenic | 40.0% | |
| ! | GGCCACCAAGTTAATTTTGT+TGG | + | chr3_1:76634337-76634356 | Msa0376520:intron | 40.0% |
| ATAGAGCTGGTAACATATGC+AGG | + | chr3_1:76634392-76634411 | Msa0376520:intron | 40.0% | |
| TAGAGCTGGTAACATATGCA+GGG | + | chr3_1:76634393-76634412 | Msa0376520:intron | 40.0% | |
| AATGGAATGGCAAAGTCAGA+AGG | - | chr3_1:76634536-76634555 | None:intergenic | 40.0% | |
| GTATGCCACCAAGATAAACA+AGG | + | chr3_1:76634667-76634686 | Msa0376520:intron | 40.0% | |
| ! | TCAACGCACCTTGTTTATCT+TGG | - | chr3_1:76634678-76634697 | None:intergenic | 40.0% |
| GGGAAAAAAACACTGTAGGA+AGG | - | chr3_1:76635107-76635126 | None:intergenic | 40.0% | |
| AAACACTGTTTAGACAGGGT+GGG | - | chr3_1:76635127-76635146 | None:intergenic | 40.0% | |
| AAAACACTGTTTAGACAGGG+TGG | - | chr3_1:76635128-76635147 | None:intergenic | 40.0% | |
| GTGCAAAACACTGTTTAGAC+AGG | - | chr3_1:76635132-76635151 | None:intergenic | 40.0% | |
| AAGGGGGAAAAAAATGGAGA+AGG | - | chr3_1:76635165-76635184 | None:intergenic | 40.0% | |
| CGACTAAAGGGGGAAAAAAA+TGG | - | chr3_1:76635171-76635190 | None:intergenic | 40.0% | |
| ACAAGATAAGGCGACTAAAG+GGG | - | chr3_1:76635182-76635201 | None:intergenic | 40.0% | |
| ! | CGCCTTATCTTGTTTGAAGA+TGG | + | chr3_1:76635189-76635208 | Msa0376520:intron | 40.0% |
| TGAAGATGGTGCTCTTTCTT+TGG | + | chr3_1:76635203-76635222 | Msa0376520:intron | 40.0% | |
| ! | CGATCTACGGTTTGGAAATT+AGG | + | chr3_1:76635291-76635310 | Msa0376520:intron | 40.0% |
| ACTGTTTCCCTCTATTACAC+AGG | - | chr3_1:76635421-76635440 | None:intergenic | 40.0% | |
| GAAACAGTTAGAAGGAGATG+AGG | + | chr3_1:76635433-76635452 | Msa0376520:intron | 40.0% | |
| GATAGGTCACATTTGTCTAG+TGG | + | chr3_1:76635470-76635489 | Msa0376520:intron | 40.0% | |
| GTAAACCAGAATCTTTGCTC+TGG | - | chr3_1:76635790-76635809 | None:intergenic | 40.0% | |
| TTCTCAAACAAGAGCAAGAG+AGG | + | chr3_1:76635877-76635896 | Msa0376520:CDS | 40.0% | |
| ! | TGTTTCTAAGTTGAAGGCAG+AGG | - | chr3_1:76636021-76636040 | None:intergenic | 40.0% |
| TGCTAAATCTCTTTCCACAC+TGG | + | chr3_1:76636053-76636072 | Msa0376520:CDS | 40.0% | |
| TTTACTTCTTGGTTGGACCA+TGG | + | chr3_1:76636195-76636214 | Msa0376520:CDS | 40.0% | |
| TTACTTCTTGGTTGGACCAT+GGG | + | chr3_1:76636196-76636215 | Msa0376520:CDS | 40.0% | |
| ! | CTGGATTCAGACATTGACTA+AGG | + | chr3_1:76636251-76636270 | Msa0376520:three_prime_UTR | 40.0% |
| TCTCTCTTATGCTTCCGTTC+CGG | + | chr3_1:76632386-76632405 | Msa0376520:exon | 45.0% | |
| GTATCCCATATTAGCCGGAA+CGG | - | chr3_1:76632403-76632422 | None:intergenic | 45.0% | |
| TCTATGGATCAAGCAGCATC+TGG | - | chr3_1:76632970-76632989 | None:intergenic | 45.0% | |
| TATTCCTGCAAGACTGAGCT+TGG | + | chr3_1:76633212-76633231 | Msa0376520:CDS | 45.0% | |
| GTAGTAGGAGAGACATGATG+TGG | - | chr3_1:76633350-76633369 | None:intergenic | 45.0% | |
| TGATGGGAAATGAGAAACCC+GGG | + | chr3_1:76633543-76633562 | Msa0376520:CDS | 45.0% | |
| CACTGCTGGTAAAGATGAGT+TGG | + | chr3_1:76633577-76633596 | Msa0376520:CDS | 45.0% | |
| TGATCAAAACGCTTAGGCTG+AGG | - | chr3_1:76633659-76633678 | None:intergenic | 45.0% | |
| TGTTCCAGATGCATAACCAG+CGG | - | chr3_1:76633762-76633781 | None:intergenic | 45.0% | |
| GACAAGTTTCACAGTTGCCT+TGG | - | chr3_1:76633945-76633964 | None:intergenic | 45.0% | |
| GTGAAACTTGTCTACGTCTC+GGG | + | chr3_1:76633953-76633972 | Msa0376520:intron | 45.0% | |
| ! | AAGCACCGTCTCATGAACAA+TGG | - | chr3_1:76633987-76634006 | None:intergenic | 45.0% |
| ! | TTTATACCTCAGTACTGGGG+TGG | + | chr3_1:76634159-76634178 | Msa0376520:intron | 45.0% |
| ! | TCTAGGATCCCACTTAATGG+TGG | - | chr3_1:76634275-76634294 | None:intergenic | 45.0% |
| TCCTAGACCCAATTCACTCA+TGG | + | chr3_1:76634288-76634307 | Msa0376520:intron | 45.0% | |
| !! | GGGTTAGCCATGAGTGAATT+GGG | - | chr3_1:76634298-76634317 | None:intergenic | 45.0% |
| !! | TGGGTTAGCCATGAGTGAAT+TGG | - | chr3_1:76634299-76634318 | None:intergenic | 45.0% |
| AATTCACTCATGGCTAACCC+AGG | + | chr3_1:76634298-76634317 | Msa0376520:intron | 45.0% | |
| CTTATCTCATGGGGGGATAA+TGG | - | chr3_1:76634554-76634573 | None:intergenic | 45.0% | |
| ! | ACGCACCTTGTTTATCTTGG+TGG | - | chr3_1:76634675-76634694 | None:intergenic | 45.0% |
| !! | TAAACAAGGTGCGTTGACTG+TGG | + | chr3_1:76634681-76634700 | Msa0376520:intron | 45.0% |
| !! | AAACAAGGTGCGTTGACTGT+GGG | + | chr3_1:76634682-76634701 | Msa0376520:intron | 45.0% |
| TTCTGGACATGAATTACCGC+AGG | + | chr3_1:76634847-76634866 | Msa0376520:intron | 45.0% | |
| ! | TGCCTTTAAGAAACCAGGTG+CGG | - | chr3_1:76634973-76634992 | None:intergenic | 45.0% |
| GGGTGGGAAAAAAACACTGT+AGG | - | chr3_1:76635111-76635130 | None:intergenic | 45.0% | |
| GGGGAAAAAAATGGAGAAGG+AGG | - | chr3_1:76635162-76635181 | None:intergenic | 45.0% | |
| CAAGATAAGGCGACTAAAGG+GGG | - | chr3_1:76635181-76635200 | None:intergenic | 45.0% | |
| AACTGAACGGCTGCAAATCA+TGG | - | chr3_1:76635352-76635371 | None:intergenic | 45.0% | |
| TTGACAGGCCTGTGTAATAG+AGG | + | chr3_1:76635410-76635429 | Msa0376520:intron | 45.0% | |
| TGACAGGCCTGTGTAATAGA+GGG | + | chr3_1:76635411-76635430 | Msa0376520:intron | 45.0% | |
| GTTAAAGAGGTGGGAGTCAT+AGG | + | chr3_1:76635521-76635540 | Msa0376520:intron | 45.0% | |
| TCAGTAATGCTGCTGTTCTC+AGG | - | chr3_1:76635836-76635855 | None:intergenic | 45.0% | |
| GATATGCTCCTTCTCGTTGT+AGG | - | chr3_1:76635924-76635943 | None:intergenic | 45.0% | |
| !!! | ATGTGTCGTTGCTTTTGCAG+TGG | + | chr3_1:76636150-76636169 | Msa0376520:CDS | 45.0% |
| !!! | TGTGTCGTTGCTTTTGCAGT+GGG | + | chr3_1:76636151-76636170 | Msa0376520:CDS | 45.0% |
| !! | GTGCTGGTTTACTTCTTGGT+TGG | + | chr3_1:76636188-76636207 | Msa0376520:CDS | 45.0% |
| TGAAGGAAACATCCATCCCA+TGG | - | chr3_1:76636215-76636234 | None:intergenic | 45.0% | |
| TGTGTGATGTTTGCCATGCA+AGG | + | chr3_1:76636458-76636477 | Msa0376520:three_prime_UTR | 45.0% | |
| TCTCAAGGAAGTGAACAGTC+AGG | - | chr3_1:76636502-76636521 | None:intergenic | 45.0% | |
| CAGTTATAGAGACCAGGAAG+TGG | + | chr3_1:76636579-76636598 | Msa0376520:three_prime_UTR | 45.0% | |
| TGCTTCCGTTCCGGCTAATA+TGG | + | chr3_1:76632395-76632414 | Msa0376520:CDS | 50.0% | |
| GCTTCCGTTCCGGCTAATAT+GGG | + | chr3_1:76632396-76632415 | Msa0376520:CDS | 50.0% | |
| AACGCTTAGGCTGAGGATGA+GGG | - | chr3_1:76633652-76633671 | None:intergenic | 50.0% | |
| AAACGCTTAGGCTGAGGATG+AGG | - | chr3_1:76633653-76633672 | None:intergenic | 50.0% | |
| AGATGCATAACCAGCGGCAT+TGG | - | chr3_1:76633756-76633775 | None:intergenic | 50.0% | |
| ! | AATGCCGCTGGTTATGCATC+TGG | + | chr3_1:76633755-76633774 | Msa0376520:CDS | 50.0% |
| ! | TCTGGAACAACGCCTACTTC+TGG | + | chr3_1:76633773-76633792 | Msa0376520:CDS | 50.0% |
| TCATTACCACCCCAGTACTG+AGG | - | chr3_1:76634168-76634187 | None:intergenic | 50.0% | |
| ! | CAGTTGGCTAAGTGATGGGA+AGG | - | chr3_1:76634202-76634221 | None:intergenic | 50.0% |
| ! | GGGTCTAGGATCCCACTTAA+TGG | - | chr3_1:76634278-76634297 | None:intergenic | 50.0% |
| GCCATGAGTGAATTGGGTCT+AGG | - | chr3_1:76634292-76634311 | None:intergenic | 50.0% | |
| CTCATGGCTAACCCAGGATA+AGG | + | chr3_1:76634304-76634323 | Msa0376520:intron | 50.0% | |
| !! | CTCATGGGGGGATAATGGAA+TGG | - | chr3_1:76634549-76634568 | None:intergenic | 50.0% |
| CTGTATGTGCGGCCTTGAAA+CGG | + | chr3_1:76634938-76634957 | Msa0376520:intron | 50.0% | |
| TGTATGTGCGGCCTTGAAAC+GGG | + | chr3_1:76634939-76634958 | Msa0376520:intron | 50.0% | |
| ! | CCTTTAAGAAACCAGGTGCG+GGG | - | chr3_1:76634971-76634990 | None:intergenic | 50.0% |
| ! | GCCTTTAAGAAACCAGGTGC+GGG | - | chr3_1:76634972-76634991 | None:intergenic | 50.0% |
| GTGGGAGTCATAGGTCACAT+TGG | + | chr3_1:76635530-76635549 | Msa0376520:intron | 50.0% | |
| CATAGGTCACATTGGTCGAG+TGG | + | chr3_1:76635538-76635557 | Msa0376520:intron | 50.0% | |
| TGGTTCTTCACGTCCAGTTC+CGG | + | chr3_1:76635764-76635783 | Msa0376520:intron | 50.0% | |
| ACCAGAATCTTTGCTCTGGC+CGG | - | chr3_1:76635786-76635805 | None:intergenic | 50.0% | |
| GCAAGAAGCCTACAACGAGA+AGG | + | chr3_1:76635913-76635932 | Msa0376520:CDS | 50.0% | |
| ! | TCAAGTTGCATTCGCCAGTG+TGG | - | chr3_1:76636070-76636089 | None:intergenic | 50.0% |
| GAAGTAAACCAGCACCAGCA+AGG | - | chr3_1:76636183-76636202 | None:intergenic | 50.0% | |
| !! | GCTGGTGCTGGTTTACTTCT+TGG | + | chr3_1:76636184-76636203 | Msa0376520:CDS | 50.0% |
| TTCTTGGTTGGACCATGGGA+TGG | + | chr3_1:76636200-76636219 | Msa0376520:CDS | 50.0% | |
| !! | AGAGACCAGGAAGTGGATTG+TGG | + | chr3_1:76636586-76636605 | Msa0376520:three_prime_UTR | 50.0% |
| !! | ACCAGGAAGTGGATTGTGGT+GGG | + | chr3_1:76636590-76636609 | Msa0376520:three_prime_UTR | 50.0% |
| GGAACCAAGCTCAGTCTTGC+AGG | - | chr3_1:76633219-76633238 | None:intergenic | 55.0% | |
| GAAATGAGAAACCCGGGCCT+TGG | + | chr3_1:76633549-76633568 | Msa0376520:CDS | 55.0% | |
| ! | ACTGGTTCTTCCAATGCCGC+TGG | + | chr3_1:76633743-76633762 | Msa0376520:CDS | 55.0% |
| CCCCGCACCTGGTTTCTTAA+AGG | + | chr3_1:76634968-76634987 | Msa0376520:intron | 55.0% | |
| ATCTTTGCTCTGGCCGGAAC+TGG | - | chr3_1:76635780-76635799 | None:intergenic | 55.0% | |
| TCCGGCCAGAGCAAAGATTC+TGG | + | chr3_1:76635782-76635801 | Msa0376520:CDS | 55.0% | |
| ! | GCAGTGGGTTTAAGCCTTGC+TGG | + | chr3_1:76636166-76636185 | Msa0376520:CDS | 55.0% |
| GGTTTAAGCCTTGCTGGTGC+TGG | + | chr3_1:76636172-76636191 | Msa0376520:CDS | 55.0% | |
| !! | GACCAGGAAGTGGATTGTGG+TGG | + | chr3_1:76636589-76636608 | Msa0376520:three_prime_UTR | 55.0% |
| ACCCACCACAATCCACTTCC+TGG | - | chr3_1:76636594-76636613 | None:intergenic | 55.0% | |
| !! | AAGTGGATTGTGGTGGGTGC+AGG | + | chr3_1:76636596-76636615 | Msa0376520:three_prime_UTR | 55.0% |
| GCGGATTCAGTCTGCATGCC+CGG | + | chr3_1:76633113-76633132 | Msa0376520:CDS | 60.0% | |
| ATGAGAAACCCGGGCCTTGG+TGG | + | chr3_1:76633552-76633571 | Msa0376520:CDS | 60.0% | |
| TTACCAGCAGTGCGCCACCA+AGG | - | chr3_1:76633569-76633588 | None:intergenic | 60.0% | |
| AGAAACCAGGTGCGGGGACA+TGG | - | chr3_1:76634965-76634984 | None:intergenic | 60.0% | |
| CGGGGACATGGCCCGTTTCA+AGG | - | chr3_1:76634953-76634972 | None:intergenic | 65.0% | |
| AGCAGTGCGCCACCAAGGCC+CGG | - | chr3_1:76633564-76633583 | None:intergenic | 70.0% | |
| GCAGTGCGCCACCAAGGCCC+GGG | - | chr3_1:76633563-76633582 | None:intergenic | 75.0% | |
| !! | GGGCCTTGGTGGCGCACTGC+TGG | + | chr3_1:76633563-76633582 | Msa0376520:CDS | 75.0% |
| ACGGGCCATGTCCCCGCACC+TGG | + | chr3_1:76634957-76634976 | Msa0376520:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 76632335 | 76636629 | 76632335 | ID=Msa0376520;Name=Msa0376520 |
| chr3_1 | mRNA | 76632335 | 76636629 | 76632335 | ID=Msa0376520-mRNA-1;Parent=Msa0376520;Name=Msa0376520-mRNA-1;_AED=0.10;_eAED=0.10;_QI=59|0.33|0.5|1|1|1|4|389|482 |
| chr3_1 | exon | 76632335 | 76632477 | 76632335 | ID=Msa0376520-mRNA-1:exon:18229;Parent=Msa0376520-mRNA-1 |
| chr3_1 | exon | 76632653 | 76632741 | 76632653 | ID=Msa0376520-mRNA-1:exon:18230;Parent=Msa0376520-mRNA-1 |
| chr3_1 | exon | 76633013 | 76633828 | 76633013 | ID=Msa0376520-mRNA-1:exon:18231;Parent=Msa0376520-mRNA-1 |
| chr3_1 | exon | 76635781 | 76636629 | 76635781 | ID=Msa0376520-mRNA-1:exon:18232;Parent=Msa0376520-mRNA-1 |
| chr3_1 | five_prime_UTR | 76632335 | 76632393 | 76632335 | ID=Msa0376520-mRNA-1:five_prime_utr;Parent=Msa0376520-mRNA-1 |
| chr3_1 | CDS | 76632394 | 76632477 | 76632394 | ID=Msa0376520-mRNA-1:cds;Parent=Msa0376520-mRNA-1 |
| chr3_1 | CDS | 76632653 | 76632741 | 76632653 | ID=Msa0376520-mRNA-1:cds;Parent=Msa0376520-mRNA-1 |
| chr3_1 | CDS | 76633013 | 76633828 | 76633013 | ID=Msa0376520-mRNA-1:cds;Parent=Msa0376520-mRNA-1 |
| chr3_1 | CDS | 76635781 | 76636240 | 76635781 | ID=Msa0376520-mRNA-1:cds;Parent=Msa0376520-mRNA-1 |
| chr3_1 | three_prime_UTR | 76636241 | 76636629 | 76636241 | ID=Msa0376520-mRNA-1:three_prime_utr;Parent=Msa0376520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
