AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0516440


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516440 MtrunA17_Chr3g0127021 92.788 416 30 0 1 416 1 416 0.0 778
Msa0516440 MtrunA17_Chr1g0146861 48.731 394 150 12 42 416 42 402 4.82e-93 285
Msa0516440 MtrunA17_Chr7g0275901 33.654 416 188 13 28 414 68 424 4.34e-58 196
Msa0516440 MtrunA17_Chr8g0346681 34.167 360 178 14 88 416 41 372 7.41e-49 170
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0516440 AT2G46550.2 41.132 265 116 5 156 412 20 252 1.13e-53 179
Msa0516440 AT2G46550.3 41.132 265 116 5 156 412 92 324 1.48e-52 179
Msa0516440 AT2G46550.1 41.132 265 116 5 156 412 160 392 1.17e-51 178
Msa0516440 AT1G01240.4 40.496 242 112 8 177 414 117 330 7.76e-32 124
Msa0516440 AT1G01240.3 40.496 242 112 8 177 414 117 330 7.76e-32 124
Msa0516440 AT1G01240.1 40.496 242 112 8 177 414 117 330 7.76e-32 124
Msa0516440 AT1G01240.5 40.496 242 112 8 177 414 117 330 7.76e-32 124
Msa0516440 AT1G01240.2 40.496 242 112 8 177 414 117 330 7.76e-32 124

Find 107 sgRNAs with CRISPR-Local

Find 298 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTGGTGCTGGTTTACTTCT+TGG 0.202469 3_4:-67944109 Msa0516440:CDS
TGCTTCCGTTCCGGCTAATA+TGG 0.236774 3_4:-67947900 Msa0516440:five_prime_UTR
GTCCTTCTGATCTTTCTTCT+TGG 0.239340 3_4:+67946850 None:intergenic
TTTGACGATCTTTCTTATAT+TGG 0.255833 3_4:-67946995 Msa0516440:CDS
TCAGTCTTGCAGGAATAATT+TGG 0.259923 3_4:+67947088 None:intergenic
ATTCAATTAATGATCAAATT+CGG 0.272962 3_4:-67947204 Msa0516440:CDS
TTCTATACTGAATTTCTTGA+TGG 0.278329 3_4:-67947055 Msa0516440:CDS
CTTTGATGTTTCCGATTTCT+CGG 0.292147 3_4:-67946798 Msa0516440:CDS
TCCTTCTGATCTTTCTTCTT+GGG 0.301671 3_4:+67946851 None:intergenic
TTCAATTAATGATCAAATTC+GGG 0.324422 3_4:-67947203 Msa0516440:CDS
CAGGATTTATTTGAGAATCT+TGG 0.328624 3_4:+67944479 None:intergenic
GATATGCTCCTTCTCGTTGT+AGG 0.329509 3_4:+67944372 None:intergenic
GCAGTGGGTTTAAGCCTTGC+TGG 0.332793 3_4:-67944127 Msa0516440:CDS
TATTGGAAGTGATAATTTAT+CGG 0.333273 3_4:-67946978 Msa0516440:CDS
TCCGGCCAGAGCAAAGATTC+TGG 0.344971 3_4:-67944511 Msa0516440:CDS
GGAACCAAGCTCAGTCTTGC+AGG 0.347496 3_4:+67947078 None:intergenic
CTTATCAGAATTTCGATTAC+CGG 0.352732 3_4:+67947162 None:intergenic
ATCAAGAAATTCAGTATAGA+AGG 0.366041 3_4:+67947057 None:intergenic
GATGTCATTATTTACATTGA+AGG 0.367238 3_4:+67944064 None:intergenic
TGTAGCCACCATTTCATATC+TGG 0.379942 3_4:+67947136 None:intergenic
ACCCACCACAATCCACTTCC+TGG 0.385800 3_4:+67943702 None:intergenic
TCTAACTGAGTTCAGTTCAT+TGG 0.393593 3_4:-67947365 Msa0516440:intron
GGTTTAAGCCTTGCTGGTGC+TGG 0.404695 3_4:-67944121 Msa0516440:CDS
AGAGGAATATTTACAAATGA+TGG 0.406846 3_4:+67943919 None:intergenic
TCTCTCTTATGCTTCCGTTC+CGG 0.408909 3_4:-67947909 Msa0516440:five_prime_UTR
TCTGGAACAACGCCTACTTC+TGG 0.411020 3_4:-67946521 Msa0516440:CDS
CTTGATGGAAATGTCAAGAA+TGG 0.416125 3_4:-67947040 Msa0516440:CDS
TTGATGGAAATGTCAAGAAT+GGG 0.419864 3_4:-67947039 Msa0516440:CDS
AATGCCGCTGGTTATGCATC+TGG 0.421397 3_4:-67946539 Msa0516440:CDS
GTGCTGGTTTACTTCTTGGT+TGG 0.423182 3_4:-67944105 Msa0516440:CDS
TCAATGTAAATAATGACATC+TGG 0.424818 3_4:-67944061 Msa0516440:exon
GGGCCTTGGTGGCGCACTGC+TGG 0.425344 3_4:-67946731 Msa0516440:CDS
TCAGTAATGCTGCTGTTCTC+AGG 0.434062 3_4:+67944460 None:intergenic
GCTTCCGTTCCGGCTAATAT+GGG 0.437335 3_4:-67947899 Msa0516440:five_prime_UTR
AGCAGTGCGCCACCAAGGCC+CGG 0.441562 3_4:+67946733 None:intergenic
TTACTTCTTGGTTGGACCAT+GGG 0.448358 3_4:-67944097 Msa0516440:CDS
ACTTCTTGATCTTCAAGTAA+TGG 0.455166 3_4:+67947280 None:intergenic
TCTATGGATCAAGCAGCATC+TGG 0.456490 3_4:+67947327 None:intergenic
ATAAGCTACCAGATATGAAA+TGG 0.460867 3_4:-67947144 Msa0516440:CDS
TATTCCTGCAAGACTGAGCT+TGG 0.462198 3_4:-67947082 Msa0516440:CDS
AAACGCTTAGGCTGAGGATG+AGG 0.466545 3_4:+67946644 None:intergenic
GAAGAAAGATCAGAAGGACT+TGG 0.467901 3_4:-67946846 Msa0516440:CDS
AGATGCATAACCAGCGGCAT+TGG 0.468321 3_4:+67946541 None:intergenic
GAAATGAGAAACCCGGGCCT+TGG 0.472773 3_4:-67946745 Msa0516440:CDS
TTTACTTCTTGGTTGGACCA+TGG 0.487875 3_4:-67944098 Msa0516440:CDS
ACCAGAATCTTTGCTCTGGC+CGG 0.490478 3_4:+67944510 None:intergenic
AAGTGGATTGTGGTGGGTGC+AGG 0.490506 3_4:-67943697 Msa0516440:three_prime_UTR
CTGGATTCAGACATTGACTA+AGG 0.490930 3_4:-67944042 Msa0516440:three_prime_UTR
GCGGATTCAGTCTGCATGCC+CGG 0.491743 3_4:-67947181 Msa0516440:CDS
ATGAGAAACCCGGGCCTTGG+TGG 0.493894 3_4:-67946742 Msa0516440:CDS
CACTGCTGGTAAAGATGAGT+TGG 0.498893 3_4:-67946717 Msa0516440:CDS
TTCTTGGTTGGACCATGGGA+TGG 0.500107 3_4:-67944093 Msa0516440:CDS
TGATCATTAATTGAATTGCT+AGG 0.503875 3_4:+67947211 None:intergenic
CTCCTGCAAAAGTATGCGAC+AGG 0.504632 3_4:-67947967 None:intergenic
TCAAAAGAGTGTATATATGA+TGG 0.512014 3_4:-67943960 Msa0516440:three_prime_UTR
TGTTTCTAAGTTGAAGGCAG+AGG 0.515040 3_4:+67944275 None:intergenic
CTAACGGTTCTTAACAAAAG+AGG 0.521804 3_4:+67943901 None:intergenic
TTAAACCAGAAAACTGAGAC+TGG 0.528983 3_4:-67946569 Msa0516440:CDS
AATGATGGAAATTGAACCAA+TGG 0.530908 3_4:+67943934 None:intergenic
GTAAACCAGAATCTTTGCTC+TGG 0.535966 3_4:+67944506 None:intergenic
ACTGGTTCTTCCAATGCCGC+TGG 0.541532 3_4:-67946551 Msa0516440:CDS
GCTACATGTGAAAAGCAACT+TGG 0.542418 3_4:-67947119 Msa0516440:CDS
TCTCAAGGAAGTGAACAGTC+AGG 0.543414 3_4:+67943794 None:intergenic
AATCTCTGATCAAAACGCTT+AGG 0.546921 3_4:+67946632 None:intergenic
TTATCAGAATTTCGATTACC+GGG 0.547283 3_4:+67947163 None:intergenic
CAGTTATAGAGACCAGGAAG+TGG 0.549531 3_4:-67943714 Msa0516440:three_prime_UTR
GCAGTGCGCCACCAAGGCCC+GGG 0.550264 3_4:+67946734 None:intergenic
ACTTGAAGATCAAGAAGTAA+TGG 0.550322 3_4:-67947275 Msa0516440:exon
AAATATATACATACAACTAA+CGG 0.551075 3_4:+67943885 None:intergenic
AAGAAAGATCAGAAGGACTT+GGG 0.556919 3_4:-67946845 Msa0516440:CDS
TGAAAAGAACAGCCAGAAGT+AGG 0.557563 3_4:+67946509 None:intergenic
GAATGGTATCCCATATTAGC+CGG 0.557627 3_4:+67947890 None:intergenic
ATTATATACAAAGCCTTGCA+TGG 0.562366 3_4:+67943822 None:intergenic
TTCTCAAACAAGAGCAAGAG+AGG 0.562960 3_4:-67944416 Msa0516440:CDS
TGATCAAAACGCTTAGGCTG+AGG 0.573801 3_4:+67946638 None:intergenic
TTTGATCAGAGATTCTCAAA+GGG 0.576152 3_4:-67946623 Msa0516440:CDS
AACGCTTAGGCTGAGGATGA+GGG 0.577084 3_4:+67946645 None:intergenic
GTATATATGATGGTATCCAT+TGG 0.579504 3_4:-67943950 Msa0516440:three_prime_UTR
TCCCAAGAAGAAAGATCAGA+AGG 0.581602 3_4:-67946852 Msa0516440:CDS
TGCTAAATCTCTTTCCACAC+TGG 0.583299 3_4:-67944240 Msa0516440:CDS
TGTGTGATGTTTGCCATGCA+AGG 0.583928 3_4:-67943835 Msa0516440:three_prime_UTR
TGCCTTGCTAAATTGAGATG+TGG 0.591531 3_4:+67947868 None:intergenic
AACAGATCTCTGAGCAACAA+AGG 0.593658 3_4:+67946691 None:intergenic
AAAACGGCATCACATTTGAT+GGG 0.595069 3_4:-67946767 Msa0516440:CDS
TTCCACATCTCAATTTAGCA+AGG 0.602016 3_4:-67947870 Msa0516440:five_prime_UTR
TCTGAGTTCTGAATTAAGCA+AGG 0.603883 3_4:-67947839 Msa0516440:intron
AGAGACCAGGAAGTGGATTG+TGG 0.610782 3_4:-67943707 Msa0516440:three_prime_UTR
TTACCAGCAGTGCGCCACCA+AGG 0.611001 3_4:+67946728 None:intergenic
AAATTGCAGTTATAGAGACC+AGG 0.613822 3_4:-67943720 Msa0516440:three_prime_UTR
TCAAGTTGCATTCGCCAGTG+TGG 0.614289 3_4:+67944226 None:intergenic
TGATGGGAAATGAGAAACCC+GGG 0.619313 3_4:-67946751 Msa0516440:CDS
TGCTAAATTGAGATGTGGAA+TGG 0.620674 3_4:+67947873 None:intergenic
GTATCCCATATTAGCCGGAA+CGG 0.620962 3_4:+67947895 None:intergenic
TTGATGGGAAATGAGAAACC+CGG 0.621036 3_4:-67946752 Msa0516440:CDS
GCAAGAAGCCTACAACGAGA+AGG 0.635494 3_4:-67944380 Msa0516440:CDS
GAAGTAAACCAGCACCAGCA+AGG 0.638132 3_4:+67944113 None:intergenic
AGCTACCAGATATGAAATGG+TGG 0.640041 3_4:-67947141 Msa0516440:CDS
TGATGGAAATGTCAAGAATG+GGG 0.645416 3_4:-67947038 Msa0516440:CDS
TGAAGGAAACATCCATCCCA+TGG 0.646722 3_4:+67944081 None:intergenic
AACTCTTTGCATACAAACAG+TGG 0.649203 3_4:-67944321 Msa0516440:CDS
AATTAATGATCAAATTCGGG+CGG 0.649669 3_4:-67947200 Msa0516440:CDS
TGTGGAAAGAGATTTAGCAA+TGG 0.650005 3_4:+67944244 None:intergenic
GACCAGGAAGTGGATTGTGG+TGG 0.654052 3_4:-67943704 Msa0516440:three_prime_UTR
ACCAGGAAGTGGATTGTGGT+GGG 0.666144 3_4:-67943703 Msa0516440:three_prime_UTR
TGTTCCAGATGCATAACCAG+CGG 0.695980 3_4:+67946535 None:intergenic
TCCTGCAAAAGTATGCGACA+GGG 0.714077 3_4:-67947966 None:intergenic
GTAGTAGGAGAGACATGATG+TGG 0.764403 3_4:+67946947 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAAAATACAATTTACAA+TGG + chr3_4:67943968-67943987 None:intergenic 10.0%
!!! AACTGTTTTTTATATTAATT+AGG - chr3_4:67944343-67944362 Msa0516440:CDS 10.0%
!!! ATATAAAAAACAGTTTTCTA+TGG + chr3_4:67944338-67944357 None:intergenic 15.0%
!! ATTCAATTAATGATCAAATT+CGG - chr3_4:67944442-67944461 Msa0516440:CDS 15.0%
!! AAATATATACATACAACTAA+CGG + chr3_4:67947764-67947783 None:intergenic 15.0%
!!! GATGATGATGATTAAATTAA+AGG + chr3_4:67943854-67943873 None:intergenic 20.0%
!!! TTATTAATTATTTCTGTAGC+TGG - chr3_4:67944122-67944141 Msa0516440:CDS 20.0%
!!! ATACTAATTTTTTTGGAATC+TGG + chr3_4:67944404-67944423 None:intergenic 20.0%
!!! CAATCAGATACTAATTTTTT+TGG + chr3_4:67944411-67944430 None:intergenic 20.0%
!! CAAAAAAATTAGTATCTGAT+TGG - chr3_4:67944409-67944428 Msa0516440:CDS 20.0%
!! TTCAATTAATGATCAAATTC+GGG - chr3_4:67944443-67944462 Msa0516440:CDS 20.0%
!! TATTGGAAGTGATAATTTAT+CGG - chr3_4:67944668-67944687 Msa0516440:intron 20.0%
!! TGTTTAACTGAATTTCTTTA+CGG - chr3_4:67945185-67945204 Msa0516440:intron 20.0%
!! TTTAAATTATAAAACTGCCA+AGG - chr3_4:67945277-67945296 Msa0516440:intron 20.0%
!!! TTCATAATTACTAGTTTGAA+TGG - chr3_4:67945464-67945483 Msa0516440:intron 20.0%
!!! TCATAATTACTAGTTTGAAT+GGG - chr3_4:67945465-67945484 Msa0516440:intron 20.0%
!!! TAATTTTAAATGTATAGAGC+TGG - chr3_4:67945731-67945750 Msa0516440:intron 20.0%
!!! GTGAGTTTTTCTAAATTTTA+AGG - chr3_4:67945803-67945822 Msa0516440:intron 20.0%
!! AACTAAAACTAGTGTAATAT+TGG + chr3_4:67945977-67945996 None:intergenic 20.0%
!! TATAACGATTTATATCAACT+GGG + chr3_4:67946171-67946190 None:intergenic 20.0%
!!! CTGTTCTTTTATAAAAGAAA+TGG + chr3_4:67946366-67946385 None:intergenic 20.0%
!! AAATAAAAGAAAACAGGTAA+GGG + chr3_4:67946581-67946600 None:intergenic 20.0%
!! TAAATAAAAGAAAACAGGTA+AGG + chr3_4:67946582-67946601 None:intergenic 20.0%
!! TAAATATTCAAATCGTGATT+TGG + chr3_4:67946673-67946692 None:intergenic 20.0%
!! ATCATTTCTATATGTTAAAG+AGG - chr3_4:67946860-67946879 Msa0516440:CDS 20.0%
!! AATAAAGAAACAATGTTGAT+AGG + chr3_4:67947008-67947027 None:intergenic 20.0%
!!! AAATTTAAGTTAGCATAATC+AGG + chr3_4:67947083-67947102 None:intergenic 20.0%
!! AAATTTATTGTCAAACTATG+TGG - chr3_4:67947097-67947116 Msa0516440:CDS 20.0%
!! AAGATCAATAACAAAAAATG+TGG - chr3_4:67947471-67947490 Msa0516440:intron 20.0%
!! AGATCAATAACAAAAAATGT+GGG - chr3_4:67947472-67947491 Msa0516440:intron 20.0%
!!! AAAAATGCAAAATTTTCTCA+AGG + chr3_4:67947870-67947889 None:intergenic 20.0%
!!! GAGAAAATTTTGCATTTTTT+AGG - chr3_4:67947871-67947890 Msa0516440:five_prime_UTR 20.0%
! TGATCATTAATTGAATTGCT+AGG + chr3_4:67944438-67944457 None:intergenic 25.0%
! ATCAAGAAATTCAGTATAGA+AGG + chr3_4:67944592-67944611 None:intergenic 25.0%
! TTCTATACTGAATTTCTTGA+TGG - chr3_4:67944591-67944610 Msa0516440:intron 25.0%
! TTTGACGATCTTTCTTATAT+TGG - chr3_4:67944651-67944670 Msa0516440:intron 25.0%
!!! TTGTTTTTCATACATGTAGT+AGG + chr3_4:67944717-67944736 None:intergenic 25.0%
!!! ATTTTCAGATGTTGGTTTTT+TGG - chr3_4:67944824-67944843 Msa0516440:intron 25.0%
! TCAAACTAGTAATTATGAAG+AGG + chr3_4:67945463-67945482 None:intergenic 25.0%
! ATTCAAAAACACATAACAGT+TGG + chr3_4:67945570-67945589 None:intergenic 25.0%
! TAAAATTAAGTCTGTCAACA+AGG + chr3_4:67945719-67945738 None:intergenic 25.0%
! AAGGAAAAACATATCTTTCA+AGG + chr3_4:67945869-67945888 None:intergenic 25.0%
! TAAGAATATCTTATCTCATG+GGG + chr3_4:67945915-67945934 None:intergenic 25.0%
! CTAAGAATATCTTATCTCAT+GGG + chr3_4:67945916-67945935 None:intergenic 25.0%
! ACTAAGAATATCTTATCTCA+TGG + chr3_4:67945917-67945936 None:intergenic 25.0%
! AGATAAGATATTCTTAGTCA+TGG - chr3_4:67945919-67945938 Msa0516440:intron 25.0%
! GCATACAAAATGCAATTTAA+AGG + chr3_4:67946005-67946024 None:intergenic 25.0%
! GTATAACGATTTATATCAAC+TGG + chr3_4:67946172-67946191 None:intergenic 25.0%
! AGCAGTAAATAAAAGAAAAC+AGG + chr3_4:67946587-67946606 None:intergenic 25.0%
!! AGATGAGGCATTAATATAAT+GGG - chr3_4:67946800-67946819 Msa0516440:CDS 25.0%
! ATTTCTATATGTTAAAGAGG+TGG - chr3_4:67946863-67946882 Msa0516440:CDS 25.0%
! TTTCTATATGTTAAAGAGGT+GGG - chr3_4:67946864-67946883 Msa0516440:CDS 25.0%
! TAGTCATTTCTATATGCTAA+AGG - chr3_4:67946928-67946947 Msa0516440:CDS 25.0%
! GATATTAATGGTGAAAACAA+TGG + chr3_4:67946962-67946981 None:intergenic 25.0%
! AGTGAACTAGATGATATTAA+TGG + chr3_4:67946974-67946993 None:intergenic 25.0%
!! ATTAATATCATCTAGTTCAC+TGG - chr3_4:67946973-67946992 Msa0516440:CDS 25.0%
!!! TGTTTTTGTTTCTAAGTTGA+AGG + chr3_4:67947380-67947399 None:intergenic 25.0%
! AATAACAAAAAATGTGGGAT+TGG - chr3_4:67947477-67947496 Msa0516440:intron 25.0%
! GATGTCATTATTTACATTGA+AGG + chr3_4:67947585-67947604 None:intergenic 25.0%
! TCAATGTAAATAATGACATC+TGG - chr3_4:67947585-67947604 Msa0516440:intron 25.0%
!! TCAAAAGAGTGTATATATGA+TGG - chr3_4:67947686-67947705 Msa0516440:intron 25.0%
! AGAGGAATATTTACAAATGA+TGG + chr3_4:67947730-67947749 None:intergenic 25.0%
!!! TGTTTTTCTAAAGTCTACTC+TGG - chr3_4:67943991-67944010 Msa0516440:three_prime_UTR 30.0%
GCAGAAATCTCAATAAAACA+GGG + chr3_4:67944018-67944037 None:intergenic 30.0%
AACAGCCAAATTGAAGAAAA+AGG + chr3_4:67944069-67944088 None:intergenic 30.0%
!! TTCTTCAATTTGGCTGTTTT+AGG - chr3_4:67944071-67944090 Msa0516440:exon 30.0%
!! GCTGTTTTAGGTAATGAATT+TGG - chr3_4:67944083-67944102 Msa0516440:CDS 30.0%
!! TAATTATTTCTGTAGCTGGA+AGG - chr3_4:67944126-67944145 Msa0516440:CDS 30.0%
GTGAATGATAGTACTAATGA+TGG + chr3_4:67944202-67944221 None:intergenic 30.0%
ACTTCTTGATCTTCAAGTAA+TGG + chr3_4:67944369-67944388 None:intergenic 30.0%
ACTTGAAGATCAAGAAGTAA+TGG - chr3_4:67944371-67944390 Msa0516440:CDS 30.0%
AATTAATGATCAAATTCGGG+CGG - chr3_4:67944446-67944465 Msa0516440:CDS 30.0%
TTATCAGAATTTCGATTACC+GGG + chr3_4:67944486-67944505 None:intergenic 30.0%
CTTATCAGAATTTCGATTAC+CGG + chr3_4:67944487-67944506 None:intergenic 30.0%
ATAAGCTACCAGATATGAAA+TGG - chr3_4:67944502-67944521 Msa0516440:CDS 30.0%
TTGATGGAAATGTCAAGAAT+GGG - chr3_4:67944607-67944626 Msa0516440:intron 30.0%
! TTTTGATCAGAGATTCTCAA+AGG - chr3_4:67945022-67945041 Msa0516440:intron 30.0%
TTTGATCAGAGATTCTCAAA+GGG - chr3_4:67945023-67945042 Msa0516440:intron 30.0%
!!! GTTTTCTGGTTTAAAGATGA+TGG + chr3_4:67945071-67945090 None:intergenic 30.0%
AGGATTCAAAAAGTCATTTC+AGG - chr3_4:67945159-67945178 Msa0516440:intron 30.0%
TCCTAATTAAATGACCATGA+AGG + chr3_4:67945236-67945255 None:intergenic 30.0%
TTATTCCATTGTTCATGAGA+CGG - chr3_4:67945331-67945350 Msa0516440:intron 30.0%
!!! GGTGCTTATTTTTTAAAGCT+TGG - chr3_4:67945352-67945371 Msa0516440:intron 30.0%
! TTGAAGATAGCTAGCTTATT+TGG + chr3_4:67945422-67945441 None:intergenic 30.0%
AGCTATCTTCAAGTAATATG+AGG - chr3_4:67945430-67945449 Msa0516440:intron 30.0%
AACTAGTAATTATGAAGAGG+CGG + chr3_4:67945460-67945479 None:intergenic 30.0%
!!! CTTTTTTATACCTCAGTACT+GGG - chr3_4:67945507-67945526 Msa0516440:intron 30.0%
!!! TTTTTTATACCTCAGTACTG+GGG - chr3_4:67945508-67945527 Msa0516440:intron 30.0%
!! TGTTTTTGAATTCCCATGAT+AGG - chr3_4:67945579-67945598 Msa0516440:intron 30.0%
! ATCCAACAAAATTAACTTGG+TGG + chr3_4:67945694-67945713 None:intergenic 30.0%
GAGATCCAACAAAATTAACT+TGG + chr3_4:67945697-67945716 None:intergenic 30.0%
AAGAATATCTTATCTCATGG+GGG + chr3_4:67945914-67945933 None:intergenic 30.0%
TTATGTTTCAGACGCTTATA+TGG - chr3_4:67946062-67946081 Msa0516440:intron 30.0%
ATCGTTATACGTATCTATTC+TGG - chr3_4:67946182-67946201 Msa0516440:intron 30.0%
AAAATGAATTGAGATTCCTG+CGG + chr3_4:67946218-67946237 None:intergenic 30.0%
TATGAATAGTGTGATTCAGA+GGG + chr3_4:67946265-67946284 None:intergenic 30.0%
ATATGAATAGTGTGATTCAG+AGG + chr3_4:67946266-67946285 None:intergenic 30.0%
CTTCAATGATGATTCTATCT+TGG + chr3_4:67946410-67946429 None:intergenic 30.0%
!! CTGAATTTTGACAAACTGAA+CGG + chr3_4:67946717-67946736 None:intergenic 30.0%
! AAACATTGATGACATTTGAC+AGG - chr3_4:67946747-67946766 Msa0516440:CDS 30.0%
! GAGATGAGGCATTAATATAA+TGG - chr3_4:67946799-67946818 Msa0516440:CDS 30.0%
! AGGCATTAATATAATGGGAT+AGG - chr3_4:67946805-67946824 Msa0516440:CDS 30.0%
CAGGATTTATTTGAGAATCT+TGG + chr3_4:67947170-67947189 None:intergenic 30.0%
! CATGAGTCTTTTCTTTAAAC+AGG - chr3_4:67947296-67947315 Msa0516440:five_prime_UTR 30.0%
GTATATATGATGGTATCCAT+TGG - chr3_4:67947696-67947715 Msa0516440:intron 30.0%
! AATGATGGAAATTGAACCAA+TGG + chr3_4:67947715-67947734 None:intergenic 30.0%
ATTATATACAAAGCCTTGCA+TGG + chr3_4:67947827-67947846 None:intergenic 30.0%
TGCTAAATTGAGATGTGGAA+TGG + chr3_4:67943776-67943795 None:intergenic 35.0%
TTCCACATCTCAATTTAGCA+AGG - chr3_4:67943776-67943795 Msa0516440:three_prime_UTR 35.0%
!! TCTGAGTTCTGAATTAAGCA+AGG - chr3_4:67943807-67943826 Msa0516440:three_prime_UTR 35.0%
TTAAATTAAAGGCGACACAC+AGG + chr3_4:67943843-67943862 None:intergenic 35.0%
AATGGTTCTTCATGCATGTT+TGG + chr3_4:67943950-67943969 None:intergenic 35.0%
GGCAGAAATCTCAATAAAAC+AGG + chr3_4:67944019-67944038 None:intergenic 35.0%
! GCACTCCTTTTTCTTCAATT+TGG - chr3_4:67944061-67944080 Msa0516440:exon 35.0%
!!! GAATTTGGCAGTTTTAAGTC+AGG - chr3_4:67944098-67944117 Msa0516440:CDS 35.0%
TCTAACTGAGTTCAGTTCAT+TGG - chr3_4:67944281-67944300 Msa0516440:CDS 35.0%
TCAGTCTTGCAGGAATAATT+TGG + chr3_4:67944561-67944580 None:intergenic 35.0%
CTTGATGGAAATGTCAAGAA+TGG - chr3_4:67944606-67944625 Msa0516440:intron 35.0%
TGATGGAAATGTCAAGAATG+GGG - chr3_4:67944608-67944627 Msa0516440:intron 35.0%
TCCTTCTGATCTTTCTTCTT+GGG + chr3_4:67944798-67944817 None:intergenic 35.0%
AAGAAAGATCAGAAGGACTT+GGG - chr3_4:67944801-67944820 Msa0516440:intron 35.0%
CTTTGATGTTTCCGATTTCT+CGG - chr3_4:67944848-67944867 Msa0516440:intron 35.0%
!!! TTTTTCTGAGACCGAGAAAT+CGG + chr3_4:67944862-67944881 None:intergenic 35.0%
TTTCTCGGTCTCAGAAAAAA+CGG - chr3_4:67944863-67944882 Msa0516440:intron 35.0%
AAAAACGGCATCACATTTGA+TGG - chr3_4:67944878-67944897 Msa0516440:intron 35.0%
AAAACGGCATCACATTTGAT+GGG - chr3_4:67944879-67944898 Msa0516440:intron 35.0%
AATCTCTGATCAAAACGCTT+AGG + chr3_4:67945017-67945036 None:intergenic 35.0%
TTAAACCAGAAAACTGAGAC+TGG - chr3_4:67945077-67945096 Msa0516440:intron 35.0%
! CCATGAAGGCATATATTACA+GGG + chr3_4:67945222-67945241 None:intergenic 35.0%
! ACCATGAAGGCATATATTAC+AGG + chr3_4:67945223-67945242 None:intergenic 35.0%
GCCTTCATGGTCATTTAATT+AGG - chr3_4:67945232-67945251 Msa0516440:intron 35.0%
GAAGTTGAAGTATGGAACAT+TGG + chr3_4:67945395-67945414 None:intergenic 35.0%
!! TTGGCTTTGAAGTTGAAGTA+TGG + chr3_4:67945403-67945422 None:intergenic 35.0%
ACTAGTAATTATGAAGAGGC+GGG + chr3_4:67945459-67945478 None:intergenic 35.0%
! CCAGTACTGAGGTATAAAAA+AGG + chr3_4:67945509-67945528 None:intergenic 35.0%
!!! CCTTTTTTATACCTCAGTAC+TGG - chr3_4:67945506-67945525 Msa0516440:intron 35.0%
ATAACAGTTGGCTAAGTGAT+GGG + chr3_4:67945558-67945577 None:intergenic 35.0%
AAATTCAGACCACCATTAAG+TGG - chr3_4:67945615-67945634 Msa0516440:intron 35.0%
AATTCAGACCACCATTAAGT+GGG - chr3_4:67945616-67945635 Msa0516440:intron 35.0%
ACCCAGGATAAGGATATTTA+TGG - chr3_4:67945666-67945685 Msa0516440:intron 35.0%
CCCATAAATATCCTTATCCT+GGG + chr3_4:67945670-67945689 None:intergenic 35.0%
CCCAGGATAAGGATATTTAT+GGG - chr3_4:67945667-67945686 Msa0516440:intron 35.0%
CCAGGATAAGGATATTTATG+GGG - chr3_4:67945668-67945687 Msa0516440:intron 35.0%
GCATATAATGAGAAGAGAGT+GGG + chr3_4:67945839-67945858 None:intergenic 35.0%
AGCATATAATGAGAAGAGAG+TGG + chr3_4:67945840-67945859 None:intergenic 35.0%
AGAATATCTTATCTCATGGG+GGG + chr3_4:67945913-67945932 None:intergenic 35.0%
AGTGTAATATTGGAGAACAG+TGG + chr3_4:67945967-67945986 None:intergenic 35.0%
TTCATATTCTGCTGTATGTG+CGG - chr3_4:67946279-67946298 Msa0516440:intron 35.0%
! TAACATGCCTTTAAGAAACC+AGG + chr3_4:67946330-67946349 None:intergenic 35.0%
GGAAAAAAACACTGTAGGAA+GGG + chr3_4:67946458-67946477 None:intergenic 35.0%
TGCAAAACACTGTTTAGACA+GGG + chr3_4:67946483-67946502 None:intergenic 35.0%
AACAAGATAAGGCGACTAAA+GGG + chr3_4:67946535-67946554 None:intergenic 35.0%
AAACAAGATAAGGCGACTAA+AGG + chr3_4:67946536-67946555 None:intergenic 35.0%
CACCATCTTCAAACAAGATA+AGG + chr3_4:67946546-67946565 None:intergenic 35.0%
!! CGCTTATTTTCTTCGATCTA+CGG - chr3_4:67946630-67946649 Msa0516440:CDS 35.0%
! ATTTTCTTCGATCTACGGTT+TGG - chr3_4:67946635-67946654 Msa0516440:CDS 35.0%
AATAGAGGGAAACAGTTAGA+AGG - chr3_4:67946777-67946796 Msa0516440:CDS 35.0%
AACTCTTTGCATACAAACAG+TGG - chr3_4:67947325-67947344 Msa0516440:five_prime_UTR 35.0%
TGTGGAAAGAGATTTAGCAA+TGG + chr3_4:67947405-67947424 None:intergenic 35.0%
CTAACGGTTCTTAACAAAAG+AGG + chr3_4:67947748-67947767 None:intergenic 35.0%
AAATTGCAGTTATAGAGACC+AGG - chr3_4:67947926-67947945 Msa0516440:five_prime_UTR 35.0%
GAATGGTATCCCATATTAGC+CGG + chr3_4:67943759-67943778 None:intergenic 40.0%
TGCCTTGCTAAATTGAGATG+TGG + chr3_4:67943781-67943800 None:intergenic 40.0%
GTGTACATAAGAGCAGTGTT+TGG + chr3_4:67944040-67944059 None:intergenic 40.0%
AGCTACCAGATATGAAATGG+TGG - chr3_4:67944505-67944524 Msa0516440:CDS 40.0%
TGTAGCCACCATTTCATATC+TGG + chr3_4:67944513-67944532 None:intergenic 40.0%
GCTACATGTGAAAAGCAACT+TGG - chr3_4:67944527-67944546 Msa0516440:intron 40.0%
TGCCAGAATGCGAAAAATTG+AGG - chr3_4:67944743-67944762 Msa0516440:intron 40.0%
! AGCCTCAATTTTTCGCATTC+TGG + chr3_4:67944748-67944767 None:intergenic 40.0%
TCCCAAGAAGAAAGATCAGA+AGG - chr3_4:67944794-67944813 Msa0516440:intron 40.0%
GTCCTTCTGATCTTTCTTCT+TGG + chr3_4:67944799-67944818 None:intergenic 40.0%
GAAGAAAGATCAGAAGGACT+TGG - chr3_4:67944800-67944819 Msa0516440:intron 40.0%
! GACTTGGGATTTTCAGATGT+TGG - chr3_4:67944816-67944835 Msa0516440:intron 40.0%
TTGATGGGAAATGAGAAACC+CGG - chr3_4:67944894-67944913 Msa0516440:intron 40.0%
AACAGATCTCTGAGCAACAA+AGG + chr3_4:67944958-67944977 None:intergenic 40.0%
! AAGAACCAGTCTCAGTTTTC+TGG + chr3_4:67945085-67945104 None:intergenic 40.0%
TGAAAAGAACAGCCAGAAGT+AGG + chr3_4:67945140-67945159 None:intergenic 40.0%
!! TACTTCTGGCTGTTCTTTTC+AGG - chr3_4:67945139-67945158 Msa0516440:intron 40.0%
CCCTGTAATATATGCCTTCA+TGG - chr3_4:67945219-67945238 Msa0516440:intron 40.0%
TGTGAAACTTGTCTACGTCT+CGG - chr3_4:67945304-67945323 Msa0516440:intron 40.0%
CATAACAGTTGGCTAAGTGA+TGG + chr3_4:67945559-67945578 None:intergenic 40.0%
CGACAACTTTCTCCTATCAT+GGG + chr3_4:67945594-67945613 None:intergenic 40.0%
ACGACAACTTTCTCCTATCA+TGG + chr3_4:67945595-67945614 None:intergenic 40.0%
CCCCATAAATATCCTTATCC+TGG + chr3_4:67945671-67945690 None:intergenic 40.0%
! GGCCACCAAGTTAATTTTGT+TGG - chr3_4:67945689-67945708 Msa0516440:intron 40.0%
ATAGAGCTGGTAACATATGC+AGG - chr3_4:67945744-67945763 Msa0516440:intron 40.0%
TAGAGCTGGTAACATATGCA+GGG - chr3_4:67945745-67945764 Msa0516440:intron 40.0%
AATGGAATGGCAAAGTCAGA+AGG + chr3_4:67945888-67945907 None:intergenic 40.0%
GTATGCCACCAAGATAAACA+AGG - chr3_4:67946019-67946038 Msa0516440:intron 40.0%
! TCAACGCACCTTGTTTATCT+TGG + chr3_4:67946030-67946049 None:intergenic 40.0%
GGGAAAAAAACACTGTAGGA+AGG + chr3_4:67946459-67946478 None:intergenic 40.0%
AAACACTGTTTAGACAGGGT+GGG + chr3_4:67946479-67946498 None:intergenic 40.0%
AAAACACTGTTTAGACAGGG+TGG + chr3_4:67946480-67946499 None:intergenic 40.0%
GTGCAAAACACTGTTTAGAC+AGG + chr3_4:67946484-67946503 None:intergenic 40.0%
AAGGGGGAAAAAAATGGAGA+AGG + chr3_4:67946517-67946536 None:intergenic 40.0%
CGACTAAAGGGGGAAAAAAA+TGG + chr3_4:67946523-67946542 None:intergenic 40.0%
ACAAGATAAGGCGACTAAAG+GGG + chr3_4:67946534-67946553 None:intergenic 40.0%
! CGCCTTATCTTGTTTGAAGA+TGG - chr3_4:67946541-67946560 Msa0516440:CDS 40.0%
TGAAGATGGTGCTCTTTCTT+TGG - chr3_4:67946555-67946574 Msa0516440:CDS 40.0%
! CGATCTACGGTTTGGAAATT+AGG - chr3_4:67946643-67946662 Msa0516440:CDS 40.0%
ACTGTTTCCCTCTATTACAC+AGG + chr3_4:67946773-67946792 None:intergenic 40.0%
GAAACAGTTAGAAGGAGATG+AGG - chr3_4:67946785-67946804 Msa0516440:CDS 40.0%
GATAGGTCACATTTGTCTAG+TGG - chr3_4:67946822-67946841 Msa0516440:CDS 40.0%
GTAAACCAGAATCTTTGCTC+TGG + chr3_4:67947143-67947162 None:intergenic 40.0%
TTCTCAAACAAGAGCAAGAG+AGG - chr3_4:67947230-67947249 Msa0516440:CDS 40.0%
! TGTTTCTAAGTTGAAGGCAG+AGG + chr3_4:67947374-67947393 None:intergenic 40.0%
TGCTAAATCTCTTTCCACAC+TGG - chr3_4:67947406-67947425 Msa0516440:intron 40.0%
TTTACTTCTTGGTTGGACCA+TGG - chr3_4:67947548-67947567 Msa0516440:intron 40.0%
TTACTTCTTGGTTGGACCAT+GGG - chr3_4:67947549-67947568 Msa0516440:intron 40.0%
! CTGGATTCAGACATTGACTA+AGG - chr3_4:67947604-67947623 Msa0516440:intron 40.0%
TCTCTCTTATGCTTCCGTTC+CGG - chr3_4:67943737-67943756 Msa0516440:three_prime_UTR 45.0%
GTATCCCATATTAGCCGGAA+CGG + chr3_4:67943754-67943773 None:intergenic 45.0%
TCTATGGATCAAGCAGCATC+TGG + chr3_4:67944322-67944341 None:intergenic 45.0%
TATTCCTGCAAGACTGAGCT+TGG - chr3_4:67944564-67944583 Msa0516440:intron 45.0%
GTAGTAGGAGAGACATGATG+TGG + chr3_4:67944702-67944721 None:intergenic 45.0%
TGATGGGAAATGAGAAACCC+GGG - chr3_4:67944895-67944914 Msa0516440:intron 45.0%
CACTGCTGGTAAAGATGAGT+TGG - chr3_4:67944929-67944948 Msa0516440:intron 45.0%
TGATCAAAACGCTTAGGCTG+AGG + chr3_4:67945011-67945030 None:intergenic 45.0%
TGTTCCAGATGCATAACCAG+CGG + chr3_4:67945114-67945133 None:intergenic 45.0%
GACAAGTTTCACAGTTGCCT+TGG + chr3_4:67945297-67945316 None:intergenic 45.0%
GTGAAACTTGTCTACGTCTC+GGG - chr3_4:67945305-67945324 Msa0516440:intron 45.0%
! AAGCACCGTCTCATGAACAA+TGG + chr3_4:67945339-67945358 None:intergenic 45.0%
! TTTATACCTCAGTACTGGGG+TGG - chr3_4:67945511-67945530 Msa0516440:intron 45.0%
! TCTAGGATCCCACTTAATGG+TGG + chr3_4:67945627-67945646 None:intergenic 45.0%
TCCTAGACCCAATTCACTCA+TGG - chr3_4:67945640-67945659 Msa0516440:intron 45.0%
!! GGGTTAGCCATGAGTGAATT+GGG + chr3_4:67945650-67945669 None:intergenic 45.0%
!! TGGGTTAGCCATGAGTGAAT+TGG + chr3_4:67945651-67945670 None:intergenic 45.0%
AATTCACTCATGGCTAACCC+AGG - chr3_4:67945650-67945669 Msa0516440:intron 45.0%
CTTATCTCATGGGGGGATAA+TGG + chr3_4:67945906-67945925 None:intergenic 45.0%
! ACGCACCTTGTTTATCTTGG+TGG + chr3_4:67946027-67946046 None:intergenic 45.0%
!! TAAACAAGGTGCGTTGACTG+TGG - chr3_4:67946033-67946052 Msa0516440:intron 45.0%
!! AAACAAGGTGCGTTGACTGT+GGG - chr3_4:67946034-67946053 Msa0516440:intron 45.0%
TTCTGGACATGAATTACCGC+AGG - chr3_4:67946199-67946218 Msa0516440:intron 45.0%
! TGCCTTTAAGAAACCAGGTG+CGG + chr3_4:67946325-67946344 None:intergenic 45.0%
GGGTGGGAAAAAAACACTGT+AGG + chr3_4:67946463-67946482 None:intergenic 45.0%
GGGGAAAAAAATGGAGAAGG+AGG + chr3_4:67946514-67946533 None:intergenic 45.0%
CAAGATAAGGCGACTAAAGG+GGG + chr3_4:67946533-67946552 None:intergenic 45.0%
AACTGAACGGCTGCAAATCA+TGG + chr3_4:67946704-67946723 None:intergenic 45.0%
TTGACAGGCCTGTGTAATAG+AGG - chr3_4:67946762-67946781 Msa0516440:CDS 45.0%
TGACAGGCCTGTGTAATAGA+GGG - chr3_4:67946763-67946782 Msa0516440:CDS 45.0%
GTTAAAGAGGTGGGAGTCAT+AGG - chr3_4:67946873-67946892 Msa0516440:CDS 45.0%
TCAGTAATGCTGCTGTTCTC+AGG + chr3_4:67947189-67947208 None:intergenic 45.0%
GATATGCTCCTTCTCGTTGT+AGG + chr3_4:67947277-67947296 None:intergenic 45.0%
!!! ATGTGTCGTTGCTTTTGCAG+TGG - chr3_4:67947503-67947522 Msa0516440:intron 45.0%
!!! TGTGTCGTTGCTTTTGCAGT+GGG - chr3_4:67947504-67947523 Msa0516440:intron 45.0%
!! GTGCTGGTTTACTTCTTGGT+TGG - chr3_4:67947541-67947560 Msa0516440:intron 45.0%
TGAAGGAAACATCCATCCCA+TGG + chr3_4:67947568-67947587 None:intergenic 45.0%
TGTGTGATGTTTGCCATGCA+AGG - chr3_4:67947811-67947830 Msa0516440:intron 45.0%
TCTCAAGGAAGTGAACAGTC+AGG + chr3_4:67947855-67947874 None:intergenic 45.0%
CAGTTATAGAGACCAGGAAG+TGG - chr3_4:67947932-67947951 Msa0516440:five_prime_UTR 45.0%
TGCTTCCGTTCCGGCTAATA+TGG - chr3_4:67943746-67943765 Msa0516440:three_prime_UTR 50.0%
GCTTCCGTTCCGGCTAATAT+GGG - chr3_4:67943747-67943766 Msa0516440:three_prime_UTR 50.0%
AACGCTTAGGCTGAGGATGA+GGG + chr3_4:67945004-67945023 None:intergenic 50.0%
AAACGCTTAGGCTGAGGATG+AGG + chr3_4:67945005-67945024 None:intergenic 50.0%
AGATGCATAACCAGCGGCAT+TGG + chr3_4:67945108-67945127 None:intergenic 50.0%
! AATGCCGCTGGTTATGCATC+TGG - chr3_4:67945107-67945126 Msa0516440:intron 50.0%
! TCTGGAACAACGCCTACTTC+TGG - chr3_4:67945125-67945144 Msa0516440:intron 50.0%
TCATTACCACCCCAGTACTG+AGG + chr3_4:67945520-67945539 None:intergenic 50.0%
! CAGTTGGCTAAGTGATGGGA+AGG + chr3_4:67945554-67945573 None:intergenic 50.0%
! GGGTCTAGGATCCCACTTAA+TGG + chr3_4:67945630-67945649 None:intergenic 50.0%
GCCATGAGTGAATTGGGTCT+AGG + chr3_4:67945644-67945663 None:intergenic 50.0%
CTCATGGCTAACCCAGGATA+AGG - chr3_4:67945656-67945675 Msa0516440:intron 50.0%
!! CTCATGGGGGGATAATGGAA+TGG + chr3_4:67945901-67945920 None:intergenic 50.0%
CTGTATGTGCGGCCTTGAAA+CGG - chr3_4:67946290-67946309 Msa0516440:intron 50.0%
TGTATGTGCGGCCTTGAAAC+GGG - chr3_4:67946291-67946310 Msa0516440:intron 50.0%
! CCTTTAAGAAACCAGGTGCG+GGG + chr3_4:67946323-67946342 None:intergenic 50.0%
! GCCTTTAAGAAACCAGGTGC+GGG + chr3_4:67946324-67946343 None:intergenic 50.0%
GTGGGAGTCATAGGTCACAT+TGG - chr3_4:67946882-67946901 Msa0516440:CDS 50.0%
CATAGGTCACATTGGTCGAG+TGG - chr3_4:67946890-67946909 Msa0516440:CDS 50.0%
TGGTTCTTCACGTCCAGTTC+CGG - chr3_4:67947117-67947136 Msa0516440:CDS 50.0%
ACCAGAATCTTTGCTCTGGC+CGG + chr3_4:67947139-67947158 None:intergenic 50.0%
GCAAGAAGCCTACAACGAGA+AGG - chr3_4:67947266-67947285 Msa0516440:exon 50.0%
! TCAAGTTGCATTCGCCAGTG+TGG + chr3_4:67947423-67947442 None:intergenic 50.0%
GAAGTAAACCAGCACCAGCA+AGG + chr3_4:67947536-67947555 None:intergenic 50.0%
!! GCTGGTGCTGGTTTACTTCT+TGG - chr3_4:67947537-67947556 Msa0516440:intron 50.0%
TTCTTGGTTGGACCATGGGA+TGG - chr3_4:67947553-67947572 Msa0516440:intron 50.0%
!! AGAGACCAGGAAGTGGATTG+TGG - chr3_4:67947939-67947958 Msa0516440:five_prime_UTR 50.0%
!! ACCAGGAAGTGGATTGTGGT+GGG - chr3_4:67947943-67947962 Msa0516440:five_prime_UTR 50.0%
GGAACCAAGCTCAGTCTTGC+AGG + chr3_4:67944571-67944590 None:intergenic 55.0%
GAAATGAGAAACCCGGGCCT+TGG - chr3_4:67944901-67944920 Msa0516440:intron 55.0%
! ACTGGTTCTTCCAATGCCGC+TGG - chr3_4:67945095-67945114 Msa0516440:intron 55.0%
CCCCGCACCTGGTTTCTTAA+AGG - chr3_4:67946320-67946339 Msa0516440:intron 55.0%
ATCTTTGCTCTGGCCGGAAC+TGG + chr3_4:67947133-67947152 None:intergenic 55.0%
TCCGGCCAGAGCAAAGATTC+TGG - chr3_4:67947135-67947154 Msa0516440:CDS 55.0%
! GCAGTGGGTTTAAGCCTTGC+TGG - chr3_4:67947519-67947538 Msa0516440:intron 55.0%
GGTTTAAGCCTTGCTGGTGC+TGG - chr3_4:67947525-67947544 Msa0516440:intron 55.0%
!! GACCAGGAAGTGGATTGTGG+TGG - chr3_4:67947942-67947961 Msa0516440:five_prime_UTR 55.0%
ACCCACCACAATCCACTTCC+TGG + chr3_4:67947947-67947966 None:intergenic 55.0%
!! AAGTGGATTGTGGTGGGTGC+AGG - chr3_4:67947949-67947968 Msa0516440:five_prime_UTR 55.0%
GCGGATTCAGTCTGCATGCC+CGG - chr3_4:67944465-67944484 Msa0516440:CDS 60.0%
ATGAGAAACCCGGGCCTTGG+TGG - chr3_4:67944904-67944923 Msa0516440:intron 60.0%
TTACCAGCAGTGCGCCACCA+AGG + chr3_4:67944921-67944940 None:intergenic 60.0%
AGAAACCAGGTGCGGGGACA+TGG + chr3_4:67946317-67946336 None:intergenic 60.0%
CGGGGACATGGCCCGTTTCA+AGG + chr3_4:67946305-67946324 None:intergenic 65.0%
AGCAGTGCGCCACCAAGGCC+CGG + chr3_4:67944916-67944935 None:intergenic 70.0%
GCAGTGCGCCACCAAGGCCC+GGG + chr3_4:67944915-67944934 None:intergenic 75.0%
!! GGGCCTTGGTGGCGCACTGC+TGG - chr3_4:67944915-67944934 Msa0516440:intron 75.0%
ACGGGCCATGTCCCCGCACC+TGG - chr3_4:67946309-67946328 Msa0516440:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 67943686 67947982 67943686 ID=Msa0516440;Name=Msa0516440
chr3_4 mRNA 67943686 67947982 67943686 ID=Msa0516440-mRNA-1;Parent=Msa0516440;Name=Msa0516440-mRNA-1;_AED=0.10;_eAED=0.10;_QI=237|1|1|1|0.5|0.33|3|389|416
chr3_4 exon 67943686 67944534 67943686 ID=Msa0516440-mRNA-1:exon:17850;Parent=Msa0516440-mRNA-1
chr3_4 exon 67946488 67947372 67946488 ID=Msa0516440-mRNA-1:exon:17849;Parent=Msa0516440-mRNA-1
chr3_4 exon 67947840 67947982 67947840 ID=Msa0516440-mRNA-1:exon:17848;Parent=Msa0516440-mRNA-1
chr3_4 five_prime_UTR 67947840 67947982 67947840 ID=Msa0516440-mRNA-1:five_prime_utr;Parent=Msa0516440-mRNA-1
chr3_4 five_prime_UTR 67947279 67947372 67947279 ID=Msa0516440-mRNA-1:five_prime_utr;Parent=Msa0516440-mRNA-1
chr3_4 CDS 67946488 67947278 67946488 ID=Msa0516440-mRNA-1:cds;Parent=Msa0516440-mRNA-1
chr3_4 CDS 67944075 67944534 67944075 ID=Msa0516440-mRNA-1:cds;Parent=Msa0516440-mRNA-1
chr3_4 three_prime_UTR 67943686 67944074 67943686 ID=Msa0516440-mRNA-1:three_prime_utr;Parent=Msa0516440-mRNA-1
Gene Sequence

>Msa0516440

ATGGCAAATTTCCAGATTCCAAAAAAATTAGTATCTGATTGGAAACCTAGCAATTCAATTAATGATCAAATTCGGGCGGATTCAGTCTGCATGCCCGGTAATCGAAATTCTGATAAGCTACCAGATATGAAATGGTGGCTACATGTGAAAAGCAACTTGGATTGTGAACCAAATTATTCCTGCAAGACTGAGCTTGGTTCCTTCTATACTGAATTTCTTGATGGAAATGTCAAGAATGGGGAAGATCAATCTATCATTGACTTTGACGATCTTTCTTATATTGGAAGTGATAATTTATCGGTTGATCAGCCACATCATGTCTCTCCTACTACATGTATGAAAAACAACAATAATGCCAGAATGCGAAAAATTGAGGCTTCATTGAACAATGATTTTCATTTTACTCCCAAGAAGAAAGATCAGAAGGACTTGGGATTTTCAGATGTTGGTTTTTTGGACTTTGATGTTTCCGATTTCTCGGTCTCAGAAAAAACGGCATCACATTTGATGGGAAATGAGAAACCCGGGCCTTGGTGGCGCACTGCTGGTAAAGATGAGTTGGCTTCCTTTGTTGCTCAGAGATCTGTTGAGCATGTTGAAAATTGTGATCTCCCTCATCCTCAGCCTAAGCGTTTTGATCAGAGATTCTCAAAGGGTGTAGATAATGATAAGATTCTACCATCATCTTTAAACCAGAAAACTGAGACTGGTTCTTCCAATGCCGCTGGTTATGCATCTGGAACAACGCCTACTTCTGGCTGTTCTTTTCAGGATTCAAAAAGTCATTTCAGTTCCGGCCAGAGCAAAGATTCTGGTTTACGCAACCAAGATTCTCAAATAAATCCTGAGAACAGCAGCATTACTGAGCTGTTAGAAGCACTGTGTCATTCTCAAACAAGAGCAAGAGAGGCTGAGAAAGCAGCGCAAGAAGCCTACAACGAGAAGGAGCATATCATGAGTCTTTTCTTTAAACAGGTTTCTCAACTCTTTGCATACAAACAGTGGTACTACATGCTGCAGCTCGAGAACCTCTGCCTTCAACTTAGAAACAAAAACAAACCATTGCTAAATCTCTTTCCACACTGGCGAATGCAACTTGAGAAAAATCGCAACAGAGCTGAAAAGAGAAAGATCAATAACAAAAAATGTGGGATTGGAAAATGTGTCGTTGCTTTTGCAGTGGGTTTAAGCCTTGCTGGTGCTGGTTTACTTCTTGGTTGGACCATGGGATGGATGTTTCCTTCAATGTAA

Protein sequence

>Msa0516440

MANFQIPKKLVSDWKPSNSINDQIRADSVCMPGNRNSDKLPDMKWWLHVKSNLDCEPNYSCKTELGSFYTEFLDGNVKNGEDQSIIDFDDLSYIGSDNLSVDQPHHVSPTTCMKNNNNARMRKIEASLNNDFHFTPKKKDQKDLGFSDVGFLDFDVSDFSVSEKTASHLMGNEKPGPWWRTAGKDELASFVAQRSVEHVENCDLPHPQPKRFDQRFSKGVDNDKILPSSLNQKTETGSSNAAGYASGTTPTSGCSFQDSKSHFSSGQSKDSGLRNQDSQINPENSSITELLEALCHSQTRAREAEKAAQEAYNEKEHIMSLFFKQVSQLFAYKQWYYMLQLENLCLQLRNKNKPLLNLFPHWRMQLEKNRNRAEKRKINNKKCGIGKCVVAFAVGLSLAGAGLLLGWTMGWMFPSM*