Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376580 | PNY16965.1 | 70.175 | 114 | 20 | 2 | 71 | 184 | 115 | 214 | 9.19e-40 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376580 | sp|P08770|TRA1_MAIZE | 35.897 | 117 | 74 | 1 | 206 | 321 | 230 | 346 | 7.31e-11 | 66.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376580 | A0A2K3PNV1 | 70.175 | 114 | 20 | 2 | 71 | 184 | 115 | 214 | 4.39e-40 | 153 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0376580 | Msa0516380 | 0.918802 | 9.939135e-87 | -8.615850e-47 |
| Msa0376580 | Msa1084250 | 0.985070 | 1.947158e-162 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376580 | MtrunA17_Chr5g0395271 | 69.298 | 114 | 21 | 2 | 71 | 184 | 114 | 213 | 6.33e-42 | 148 |
| Msa0376580 | MtrunA17_Chr8g0354631 | 50.394 | 127 | 63 | 0 | 203 | 329 | 158 | 284 | 2.12e-39 | 147 |
| Msa0376580 | MtrunA17_Chr5g0402891 | 54.032 | 124 | 57 | 0 | 206 | 329 | 46 | 169 | 6.93e-37 | 139 |
| Msa0376580 | MtrunA17_Chr4g0052601 | 33.742 | 163 | 101 | 2 | 162 | 323 | 75 | 231 | 6.61e-23 | 98.6 |
| Msa0376580 | MtrunA17_Chr7g0263231 | 34.234 | 111 | 73 | 0 | 208 | 318 | 545 | 655 | 2.60e-14 | 73.9 |
| Msa0376580 | MtrunA17_Chr7g0263261 | 32.432 | 111 | 75 | 0 | 208 | 318 | 486 | 596 | 2.73e-13 | 70.9 |
| Msa0376580 | MtrunA17_Chr2g0308821 | 30.081 | 123 | 85 | 1 | 208 | 329 | 133 | 255 | 4.02e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0376580 | AT1G65020.1 | 45.536 | 112 | 44 | 4 | 73 | 184 | 116 | 210 | 8.65e-18 | 83.2 |
Find 62 sgRNAs with CRISPR-Local
Find 404 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGAAAGATTGTGTTTA+GGG | 0.198355 | 3_1:-76681115 | Msa0376580:CDS |
| CTTAGCACAGCTCCAATATA+TGG | 0.238263 | 3_1:-76685188 | Msa0376580:CDS |
| ATCTTGTTCTCCTTACTAAA+AGG | 0.244750 | 3_1:-76686514 | Msa0376580:intron |
| CTTCAAGAAAGATTGTGTTT+AGG | 0.294344 | 3_1:-76681116 | Msa0376580:CDS |
| TCAGAAACATACCATAGTTT+AGG | 0.300619 | 3_1:+76685833 | None:intergenic |
| TGAGACTCAACTACTCTAAA+AGG | 0.310066 | 3_1:+76681186 | None:intergenic |
| AACTAACCTATCCCATATAT+TGG | 0.313425 | 3_1:+76685176 | None:intergenic |
| TTCTCTTCTCCCTTGCTAAT+AGG | 0.341493 | 3_1:-76686724 | Msa0376580:intron |
| TTCTTGAAGGGGTATTCAAA+TGG | 0.363906 | 3_1:+76681130 | None:intergenic |
| ACATACCATAGTTTAGGATT+TGG | 0.369028 | 3_1:+76685839 | None:intergenic |
| TCCATTCAGTATCAATGAAA+TGG | 0.370949 | 3_1:+76680962 | None:intergenic |
| TACTACCAAATCCTAAACTA+TGG | 0.377578 | 3_1:-76685844 | Msa0376580:intron |
| GCACCAATTGTTCACGGGTA+AGG | 0.391578 | 3_1:+76685354 | None:intergenic |
| TACCCTTACCCGTGAACAAT+TGG | 0.395683 | 3_1:-76685357 | Msa0376580:CDS |
| TATCAATGAAATGGACAGTT+GGG | 0.396600 | 3_1:+76680971 | None:intergenic |
| TCTTGAAGGGGTATTCAAAT+GGG | 0.402321 | 3_1:+76681131 | None:intergenic |
| TCCATTTCATTGATACTGAA+TGG | 0.412760 | 3_1:-76680963 | Msa0376580:CDS |
| CTAAACACAATCTTTCTTGA+AGG | 0.421143 | 3_1:+76681117 | None:intergenic |
| TAAAGAGTGCACTTCTTAGC+TGG | 0.440342 | 3_1:-76685256 | Msa0376580:CDS |
| AAAGAGGTTGCTCTCTAGTT+GGG | 0.453648 | 3_1:-76685279 | Msa0376580:CDS |
| AAAAGAGGTTGCTCTCTAGT+TGG | 0.458121 | 3_1:-76685280 | Msa0376580:CDS |
| TCTTTGAGCTTCCATGTCAA+TGG | 0.459562 | 3_1:+76686793 | None:intergenic |
| CACCAATTGTTCACGGGTAA+GGG | 0.472652 | 3_1:+76685355 | None:intergenic |
| TGGAAGCTCAAAGAGCAAAT+AGG | 0.475178 | 3_1:-76686784 | Msa0376580:CDS |
| TGGAAAATCACCAGCAGGAA+TGG | 0.484754 | 3_1:+76685391 | None:intergenic |
| GAAGAGTCGTTGAGGGATTG+AGG | 0.486035 | 3_1:-76680868 | None:intergenic |
| AGTAAGGAGAACAAGATCAA+TGG | 0.488423 | 3_1:+76686520 | None:intergenic |
| ATTGTGTCACTCGTGTGGTT+TGG | 0.489867 | 3_1:+76680904 | None:intergenic |
| GTGAGTAAATTGACATGGAT+TGG | 0.494445 | 3_1:+76686815 | None:intergenic |
| AGCCCCTCTCTGTTCAAGAT+AGG | 0.496950 | 3_1:+76685901 | None:intergenic |
| TTAGCACAGCTCCAATATAT+GGG | 0.498327 | 3_1:-76685187 | Msa0376580:CDS |
| TAAACACAATCTTTCTTGAA+GGG | 0.504065 | 3_1:+76681118 | None:intergenic |
| AAAAGTTGAAGAGTCGTTGA+GGG | 0.509511 | 3_1:-76680875 | Msa0376580:CDS |
| CTCTAAAAGGAAGTTTAGAA+AGG | 0.509865 | 3_1:+76681199 | None:intergenic |
| TCAGTTGCACCAATTGTTCA+CGG | 0.521759 | 3_1:+76685348 | None:intergenic |
| TTACTAGTTAGAAATTCTCT+AGG | 0.524564 | 3_1:+76685872 | None:intergenic |
| CAGTTGCACCAATTGTTCAC+GGG | 0.536510 | 3_1:+76685349 | None:intergenic |
| ATTTGCAGTACCATTCCTGC+TGG | 0.540904 | 3_1:-76685401 | Msa0376580:intron |
| CAATTTACTCACCATTGACA+TGG | 0.548406 | 3_1:-76686804 | Msa0376580:CDS |
| TGCACTTCTTAGCTGGAAGA+AGG | 0.549066 | 3_1:-76685249 | Msa0376580:CDS |
| CAATTGGTGCAACTGAAGCT+AGG | 0.551121 | 3_1:-76685341 | Msa0376580:CDS |
| GTATCAATGAAATGGACAGT+TGG | 0.562063 | 3_1:+76680970 | None:intergenic |
| CATATATTGGAGCTGTGCTA+AGG | 0.567562 | 3_1:+76685189 | None:intergenic |
| CTTGAAGGGGTATTCAAATG+GGG | 0.567978 | 3_1:+76681132 | None:intergenic |
| GCAGCTGCTGCACCATTGCA+AGG | 0.568115 | 3_1:-76681258 | Msa0376580:CDS |
| AATCCTATCTTGAACAGAGA+GGG | 0.568927 | 3_1:-76685904 | Msa0376580:CDS |
| ACAGCTCCAATATATGGGAT+AGG | 0.575735 | 3_1:-76685182 | Msa0376580:intron |
| AAACACAATCTTTCTTGAAG+GGG | 0.576428 | 3_1:+76681119 | None:intergenic |
| AGAACAAGATCAATGGTTTG+TGG | 0.580661 | 3_1:+76686527 | None:intergenic |
| TCAGATGGAAAATCACCAGC+AGG | 0.586827 | 3_1:+76685386 | None:intergenic |
| CAATGGTGAGTAAATTGACA+TGG | 0.601830 | 3_1:+76686810 | None:intergenic |
| AAATGAAAGACCTATTAGCA+AGG | 0.610297 | 3_1:+76686714 | None:intergenic |
| AATGAAAGACCTATTAGCAA+GGG | 0.612530 | 3_1:+76686715 | None:intergenic |
| GACATATTGTGTCACTCGTG+TGG | 0.615371 | 3_1:+76680899 | None:intergenic |
| CTAAAAGCATCACCTTGCAA+TGG | 0.621536 | 3_1:+76681246 | None:intergenic |
| ATCAATGAAATGGACAGTTG+GGG | 0.624130 | 3_1:+76680972 | None:intergenic |
| GTAAGGGTAACAACTTCAGA+TGG | 0.625627 | 3_1:+76685371 | None:intergenic |
| ATCCTATCTTGAACAGAGAG+GGG | 0.651255 | 3_1:-76685903 | Msa0376580:CDS |
| AGTTTACTATAGAAGTCAAG+CGG | 0.674051 | 3_1:+76681007 | None:intergenic |
| AGCAAGGGAGAAGAGAACAG+TGG | 0.681694 | 3_1:+76686730 | None:intergenic |
| GAATCCTATCTTGAACAGAG+AGG | 0.702978 | 3_1:-76685905 | Msa0376580:CDS |
| GGTGAAGAAGAATCAGCATG+AGG | 0.709031 | 3_1:+76686548 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTAATTTTAAGTATTAT+GGG | + | chr3_1:76682792-76682811 | None:intergenic | 10.0% |
| !!! | TTATGTAATTTTAAGTATTA+TGG | + | chr3_1:76682793-76682812 | None:intergenic | 10.0% |
| !! | TTAAACAAAGTAAATAAAAT+GGG | - | chr3_1:76684247-76684266 | Msa0376580:intron | 10.0% |
| !! | TACAAACAAAAAAATAAAAA+GGG | + | chr3_1:76685660-76685679 | None:intergenic | 10.0% |
| !!! | AATAAAAATACCTTTTAGTA+AGG | + | chr3_1:76681190-76681209 | None:intergenic | 15.0% |
| !!! | ACACATTTTACAATTTATTA+TGG | - | chr3_1:76681239-76681258 | Msa0376580:CDS | 15.0% |
| !!! | ATTCTCTTTTAAATAGTTAT+TGG | - | chr3_1:76682026-76682045 | Msa0376580:intron | 15.0% |
| !!! | CTTTTTTATTTTGTTTTTGA+TGG | + | chr3_1:76682396-76682415 | None:intergenic | 15.0% |
| !! | TCAAAAACAAAATAAAAAAG+AGG | - | chr3_1:76682396-76682415 | Msa0376580:intron | 15.0% |
| !!! | CTGGATTTTATATTAAAAAA+TGG | + | chr3_1:76682912-76682931 | None:intergenic | 15.0% |
| !! | CATTAAGTAAATATAAACTT+AGG | - | chr3_1:76682933-76682952 | Msa0376580:intron | 15.0% |
| !! | AAGAATAAAACAAAAAGTAA+GGG | - | chr3_1:76683685-76683704 | Msa0376580:intron | 15.0% |
| !! | AAGGATGTATTAAATTTATA+AGG | - | chr3_1:76684190-76684209 | Msa0376580:intron | 15.0% |
| !! | CTTAAACAAAGTAAATAAAA+TGG | - | chr3_1:76684246-76684265 | Msa0376580:intron | 15.0% |
| !! | TTAAACAAAATTACTATTTC+AGG | - | chr3_1:76684542-76684561 | Msa0376580:intron | 15.0% |
| !!! | ATTTTTTTTTATCAGAAATC+AGG | + | chr3_1:76685519-76685538 | None:intergenic | 15.0% |
| !! | GTACAAACAAAAAAATAAAA+AGG | + | chr3_1:76685661-76685680 | None:intergenic | 15.0% |
| !!! | TTACTACTATTTTCATAATT+TGG | - | chr3_1:76686015-76686034 | Msa0376580:intron | 15.0% |
| !!! | AGTAAGTTTTAATATGATTA+TGG | - | chr3_1:76686385-76686404 | Msa0376580:intron | 15.0% |
| !! | AAAAAGAAAACAGCAAAAAT+AGG | + | chr3_1:76681065-76681084 | None:intergenic | 20.0% |
| !! | CAACTAAAGGAAAAAAAAAA+TGG | + | chr3_1:76681384-76681403 | None:intergenic | 20.0% |
| !!! | CTTTTTTTACTATTCTGATT+AGG | - | chr3_1:76681568-76681587 | Msa0376580:intron | 20.0% |
| !! | AATATATATGAAACCAAATC+TGG | + | chr3_1:76681968-76681987 | None:intergenic | 20.0% |
| !!! | AGATTTGGTTTCATATATAT+TGG | - | chr3_1:76681967-76681986 | Msa0376580:intron | 20.0% |
| !! | GTTTATATTTACTTAATGAC+TGG | + | chr3_1:76682931-76682950 | None:intergenic | 20.0% |
| !! | AATGGCCTAATTAAATATAA+GGG | + | chr3_1:76682992-76683011 | None:intergenic | 20.0% |
| !! | GTTTCTTGAATTATATTGAA+TGG | + | chr3_1:76683010-76683029 | None:intergenic | 20.0% |
| !!! | CATTGTAAATTTTAAATTGC+TGG | + | chr3_1:76683185-76683204 | None:intergenic | 20.0% |
| !! | ATGTAAATTATGTAGTATTC+TGG | + | chr3_1:76683224-76683243 | None:intergenic | 20.0% |
| !! | GAATACTACATAATTTACAT+TGG | - | chr3_1:76683224-76683243 | Msa0376580:intron | 20.0% |
| !!! | TATTAATTTGAACTCAATCA+AGG | + | chr3_1:76683406-76683425 | None:intergenic | 20.0% |
| !! | TAATGATATTTATTTGAGTG+TGG | + | chr3_1:76683463-76683482 | None:intergenic | 20.0% |
| !! | TTTACTATGATGAAATATGT+TGG | + | chr3_1:76683523-76683542 | None:intergenic | 20.0% |
| !! | GAAGAATAAAACAAAAAGTA+AGG | - | chr3_1:76683684-76683703 | Msa0376580:intron | 20.0% |
| !! | AAAATGTCTTCAAACATATT+AGG | - | chr3_1:76683863-76683882 | Msa0376580:intron | 20.0% |
| !! | AAATGTCTTCAAACATATTA+GGG | - | chr3_1:76683864-76683883 | Msa0376580:intron | 20.0% |
| !!! | TTTATTACTTCGATAGTTTT+TGG | + | chr3_1:76684109-76684128 | None:intergenic | 20.0% |
| !!! | AAATAAAATGGGTTGATAAT+TGG | - | chr3_1:76684258-76684277 | Msa0376580:intron | 20.0% |
| !!! | CTTTTATAGACACAAAATTA+GGG | - | chr3_1:76684954-76684973 | Msa0376580:intron | 20.0% |
| !!! | TTTATTTTTTTGTTTGTACG+TGG | - | chr3_1:76685662-76685681 | Msa0376580:intron | 20.0% |
| !!! | TTTTCTTTTTTCATTGTTGC+AGG | - | chr3_1:76681075-76681094 | Msa0376580:CDS | 25.0% |
| ! | TTACAATTTATTATGGTGTC+TGG | - | chr3_1:76681246-76681265 | Msa0376580:CDS | 25.0% |
| ! | ATAAACATTAACCACATTGA+TGG | - | chr3_1:76681353-76681372 | Msa0376580:intron | 25.0% |
| ! | ACATACATACAAACAACTAA+AGG | + | chr3_1:76681397-76681416 | None:intergenic | 25.0% |
| ! | TGTATGTATGTTTGTAATCT+AGG | - | chr3_1:76681406-76681425 | Msa0376580:intron | 25.0% |
| ! | GTATGTATGTTTGTAATCTA+GGG | - | chr3_1:76681407-76681426 | Msa0376580:intron | 25.0% |
| ! | TATGTATGTTTGTAATCTAG+GGG | - | chr3_1:76681408-76681427 | Msa0376580:intron | 25.0% |
| !! | TAAGTGCTTGTTTGAATTTT+CGG | + | chr3_1:76681523-76681542 | None:intergenic | 25.0% |
| ! | TTACAATTGAGAGTAATGAA+TGG | - | chr3_1:76681616-76681635 | Msa0376580:intron | 25.0% |
| ! | TTACTAGTTAGAAATTCTCT+AGG | + | chr3_1:76681822-76681841 | None:intergenic | 25.0% |
| ! | TCATATATATTGGCATGTAA+TGG | - | chr3_1:76681977-76681996 | Msa0376580:intron | 25.0% |
| !!! | AATACTGTGTAATTTCTAGT+TGG | - | chr3_1:76682066-76682085 | Msa0376580:intron | 25.0% |
| ! | ATTCTTTACGTCATAAATAC+TGG | + | chr3_1:76682166-76682185 | None:intergenic | 25.0% |
| !! | TAAATTACTCAACTTTTGAC+TGG | + | chr3_1:76682210-76682229 | None:intergenic | 25.0% |
| ! | ATTCGAAAGATAAGAACAAA+TGG | + | chr3_1:76682542-76682561 | None:intergenic | 25.0% |
| ! | GATGTAGATGCTATTAATTA+GGG | - | chr3_1:76682611-76682630 | Msa0376580:intron | 25.0% |
| ! | TGGTTTCTTAAAATATCAGT+AGG | + | chr3_1:76682855-76682874 | None:intergenic | 25.0% |
| !! | CTAATTAAATATAAGGGCAT+AGG | + | chr3_1:76682986-76683005 | None:intergenic | 25.0% |
| ! | CTATGCCCTTATATTTAATT+AGG | - | chr3_1:76682984-76683003 | Msa0376580:intron | 25.0% |
| ! | GAATGGCCTAATTAAATATA+AGG | + | chr3_1:76682993-76683012 | None:intergenic | 25.0% |
| !! | AGGTTTCTTATTTATGGTTA+TGG | + | chr3_1:76683032-76683051 | None:intergenic | 25.0% |
| !! | GTCTAAAGGTTTCTTATTTA+TGG | + | chr3_1:76683038-76683057 | None:intergenic | 25.0% |
| !! | TTATATTGTCTCTTTTTGTG+CGG | + | chr3_1:76683303-76683322 | None:intergenic | 25.0% |
| !!! | ATTCTTCTTTTTTCAAGTCT+GGG | + | chr3_1:76683671-76683690 | None:intergenic | 25.0% |
| !!! | TATTCTTCTTTTTTCAAGTC+TGG | + | chr3_1:76683672-76683691 | None:intergenic | 25.0% |
| ! | TATGTTTAATGCTTATGCTA+AGG | + | chr3_1:76683762-76683781 | None:intergenic | 25.0% |
| ! | GATTAATAGGGTTATAACTT+AGG | + | chr3_1:76684427-76684446 | None:intergenic | 25.0% |
| ! | ATCTGGTTAAGAGATTAATA+GGG | + | chr3_1:76684439-76684458 | None:intergenic | 25.0% |
| ! | AATCTGGTTAAGAGATTAAT+AGG | + | chr3_1:76684440-76684459 | None:intergenic | 25.0% |
| ! | AAATTGAGAGTTATGACTTA+AGG | + | chr3_1:76684496-76684515 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTAACTCAACACT+AGG | + | chr3_1:76684533-76684552 | None:intergenic | 25.0% |
| ! | TATTTCAGGATTAAAAGCTA+GGG | - | chr3_1:76684556-76684575 | Msa0376580:intron | 25.0% |
| ! | CAATCACATAAATTGATCTT+AGG | + | chr3_1:76684599-76684618 | None:intergenic | 25.0% |
| !! | GCTTTTATAGACACAAAATT+AGG | - | chr3_1:76684953-76684972 | Msa0376580:intron | 25.0% |
| ! | AGTCAATTACTTGTAATTCA+TGG | + | chr3_1:76685252-76685271 | None:intergenic | 25.0% |
| ! | ACTCTCAAAACATTACAAAA+AGG | - | chr3_1:76685269-76685288 | Msa0376580:CDS | 25.0% |
| ! | AAACAATATCTGAACTGAAA+CGG | + | chr3_1:76685420-76685439 | None:intergenic | 25.0% |
| !!! | AGAAATCAGGTTGTTTTTTA+GGG | + | chr3_1:76685506-76685525 | None:intergenic | 25.0% |
| ! | AAACTAAAAACAAAACCCTA+AGG | + | chr3_1:76685587-76685606 | None:intergenic | 25.0% |
| ! | AATAAAGATGTCATTGTATG+TGG | + | chr3_1:76686085-76686104 | None:intergenic | 25.0% |
| !! | TTTTCTCTTATAATCAGCTA+TGG | - | chr3_1:76686175-76686194 | Msa0376580:intron | 25.0% |
| ! | TGCATATTAAAACTCATTGT+TGG | + | chr3_1:76686279-76686298 | None:intergenic | 25.0% |
| ! | TAAACACAATCTTTCTTGAA+GGG | + | chr3_1:76686576-76686595 | None:intergenic | 25.0% |
| ! | TTCAAGAAAGATTGTGTTTA+GGG | - | chr3_1:76686576-76686595 | Msa0376580:CDS | 25.0% |
| ! | CTGAATGGAAATATCAAAAA+AGG | - | chr3_1:76686743-76686762 | Msa0376580:CDS | 25.0% |
| AATGAAAGACCTATTAGCAA+GGG | + | chr3_1:76680979-76680998 | None:intergenic | 30.0% | |
| AAATGAAAGACCTATTAGCA+AGG | + | chr3_1:76680980-76680999 | None:intergenic | 30.0% | |
| TGATGAAGCTGAAAATTGAT+GGG | + | chr3_1:76681041-76681060 | None:intergenic | 30.0% | |
| ATGATGAAGCTGAAAATTGA+TGG | + | chr3_1:76681042-76681061 | None:intergenic | 30.0% | |
| ATCTTGTTCTCCTTACTAAA+AGG | - | chr3_1:76681177-76681196 | Msa0376580:CDS | 30.0% | |
| TACAAATGTGGTTGAGATTA+AGG | - | chr3_1:76681298-76681317 | Msa0376580:intron | 30.0% | |
| ATGTATGTTTGTAATCTAGG+GGG | - | chr3_1:76681409-76681428 | Msa0376580:intron | 30.0% | |
| ! | ATTTTGCAAAAGCTGCATTT+TGG | + | chr3_1:76681462-76681481 | None:intergenic | 30.0% |
| ! | CTTTTGCAAAATCATGGTAA+AGG | - | chr3_1:76681470-76681489 | Msa0376580:intron | 30.0% |
| GAAAATTCAAACAAGCACTT+AGG | - | chr3_1:76681522-76681541 | Msa0376580:intron | 30.0% | |
| CAATTGTAACTGAGCTTAAT+TGG | + | chr3_1:76681605-76681624 | None:intergenic | 30.0% | |
| ! | CATTTTCTGAACTTGTATAG+AGG | - | chr3_1:76681731-76681750 | Msa0376580:intron | 30.0% |
| TACTACCAAATCCTAAACTA+TGG | - | chr3_1:76681847-76681866 | Msa0376580:intron | 30.0% | |
| ! | ACATACCATAGTTTAGGATT+TGG | + | chr3_1:76681855-76681874 | None:intergenic | 30.0% |
| TCAGAAACATACCATAGTTT+AGG | + | chr3_1:76681861-76681880 | None:intergenic | 30.0% | |
| ACTTCAAAATTTGCCAGATT+TGG | - | chr3_1:76681952-76681971 | Msa0376580:intron | 30.0% | |
| !! | TCATAAATACTGGTTTGCAA+GGG | + | chr3_1:76682156-76682175 | None:intergenic | 30.0% |
| AACTAACCTATCCCATATAT+TGG | + | chr3_1:76682518-76682537 | None:intergenic | 30.0% | |
| GGATGTAGATGCTATTAATT+AGG | - | chr3_1:76682610-76682629 | Msa0376580:intron | 30.0% | |
| ATTCTGGATGACTGTAATTA+TGG | + | chr3_1:76683208-76683227 | None:intergenic | 30.0% | |
| ACTACATAATTTACATTGGC+AGG | - | chr3_1:76683228-76683247 | Msa0376580:intron | 30.0% | |
| ACTGTACTTGCAAAAATGAT+GGG | + | chr3_1:76683435-76683454 | None:intergenic | 30.0% | |
| TACTGTACTTGCAAAAATGA+TGG | + | chr3_1:76683436-76683455 | None:intergenic | 30.0% | |
| GATAGTACTTGTAGTTATTG+TGG | + | chr3_1:76683719-76683738 | None:intergenic | 30.0% | |
| CTAGACAAAAATGTGTTAAC+TGG | - | chr3_1:76683887-76683906 | Msa0376580:intron | 30.0% | |
| ATTGGGCTATGATAAATATC+TGG | - | chr3_1:76684075-76684094 | Msa0376580:intron | 30.0% | |
| ATTTATAAGTTCGTATCCAC+AGG | - | chr3_1:76684129-76684148 | Msa0376580:intron | 30.0% | |
| TTTATAAGTTCGTATCCACA+GGG | - | chr3_1:76684130-76684149 | Msa0376580:intron | 30.0% | |
| !! | CGGTAAAAGCGTTAAAATAA+AGG | - | chr3_1:76684171-76684190 | Msa0376580:intron | 30.0% |
| TAAATTTATAAGGTTGCCCT+AGG | - | chr3_1:76684200-76684219 | Msa0376580:intron | 30.0% | |
| !! | AAATTAACCTAGCTTTACGA+CGG | - | chr3_1:76684357-76684376 | Msa0376580:intron | 30.0% |
| TAGGGTTATAACTTAGGAAA+GGG | + | chr3_1:76684421-76684440 | None:intergenic | 30.0% | |
| ATAGGGTTATAACTTAGGAA+AGG | + | chr3_1:76684422-76684441 | None:intergenic | 30.0% | |
| CTATTTCAGGATTAAAAGCT+AGG | - | chr3_1:76684555-76684574 | Msa0376580:intron | 30.0% | |
| TTATGTGATTGAAAGAAGCT+AGG | - | chr3_1:76684608-76684627 | Msa0376580:intron | 30.0% | |
| TATGTGATTGAAAGAAGCTA+GGG | - | chr3_1:76684609-76684628 | Msa0376580:intron | 30.0% | |
| AGAGTTCGTAACAAATTACA+TGG | - | chr3_1:76684715-76684734 | Msa0376580:intron | 30.0% | |
| !!! | CAGAAATCAGGTTGTTTTTT+AGG | + | chr3_1:76685507-76685526 | None:intergenic | 30.0% |
| TATGAAGTTGTTTGCTTGTA+TGG | - | chr3_1:76685786-76685805 | Msa0376580:intron | 30.0% | |
| TGTTTGATCAAGTGTTCATT+AGG | - | chr3_1:76685871-76685890 | Msa0376580:CDS | 30.0% | |
| ATAGGATTAAACCACATTGA+AGG | + | chr3_1:76685897-76685916 | None:intergenic | 30.0% | |
| AAGCTAGATTCAATCTACAT+AGG | + | chr3_1:76685915-76685934 | None:intergenic | 30.0% | |
| ! | GATTGAATCTAGCTTATGTT+TGG | - | chr3_1:76685920-76685939 | Msa0376580:CDS | 30.0% |
| !!! | TGGATCTAGAGAAGTATTTT+GGG | + | chr3_1:76686065-76686084 | None:intergenic | 30.0% |
| AGTAAATGGAGTTACAACTA+AGG | - | chr3_1:76686202-76686221 | Msa0376580:intron | 30.0% | |
| AGCATATGAACATATCGTAA+AGG | + | chr3_1:76686308-76686327 | None:intergenic | 30.0% | |
| ! | CTCTAAAAGGAAGTTTAGAA+AGG | + | chr3_1:76686495-76686514 | None:intergenic | 30.0% |
| AAACACAATCTTTCTTGAAG+GGG | + | chr3_1:76686575-76686594 | None:intergenic | 30.0% | |
| CTAAACACAATCTTTCTTGA+AGG | + | chr3_1:76686577-76686596 | None:intergenic | 30.0% | |
| CTTCAAGAAAGATTGTGTTT+AGG | - | chr3_1:76686575-76686594 | Msa0376580:CDS | 30.0% | |
| AGTTTACTATAGAAGTCAAG+CGG | + | chr3_1:76686687-76686706 | None:intergenic | 30.0% | |
| TATCAATGAAATGGACAGTT+GGG | + | chr3_1:76686723-76686742 | None:intergenic | 30.0% | |
| TCCATTTCATTGATACTGAA+TGG | - | chr3_1:76686728-76686747 | Msa0376580:CDS | 30.0% | |
| TCCATTCAGTATCAATGAAA+TGG | + | chr3_1:76686732-76686751 | None:intergenic | 30.0% | |
| GTGAGTAAATTGACATGGAT+TGG | + | chr3_1:76680879-76680898 | None:intergenic | 35.0% | |
| CAATGGTGAGTAAATTGACA+TGG | + | chr3_1:76680884-76680903 | None:intergenic | 35.0% | |
| CAATTTACTCACCATTGACA+TGG | - | chr3_1:76680887-76680906 | Msa0376580:CDS | 35.0% | |
| !! | TCAATACCTTTTTGGAGGAA+AGG | - | chr3_1:76681100-76681119 | Msa0376580:CDS | 35.0% |
| CAAAAACCTTTCCTCCAAAA+AGG | + | chr3_1:76681109-76681128 | None:intergenic | 35.0% | |
| !! | TTTTGGAGGAAAGGTTTTTG+TGG | - | chr3_1:76681109-76681128 | Msa0376580:CDS | 35.0% |
| ! | TTTGGAGGAAAGGTTTTTGT+GGG | - | chr3_1:76681110-76681129 | Msa0376580:CDS | 35.0% |
| AGAACAAGATCAATGGTTTG+TGG | + | chr3_1:76681167-76681186 | None:intergenic | 35.0% | |
| AGTAAGGAGAACAAGATCAA+TGG | + | chr3_1:76681174-76681193 | None:intergenic | 35.0% | |
| AAATGGATGTTCCATCAATG+TGG | + | chr3_1:76681367-76681386 | None:intergenic | 35.0% | |
| TGTATGTTTGTAATCTAGGG+GGG | - | chr3_1:76681410-76681429 | Msa0376580:intron | 35.0% | |
| ! | ATGCAGCTTTTGCAAAATCA+TGG | - | chr3_1:76681464-76681483 | Msa0376580:intron | 35.0% |
| TTCAAACAAGCACTTAGGTT+AGG | - | chr3_1:76681527-76681546 | Msa0376580:intron | 35.0% | |
| TCAAACAAGCACTTAGGTTA+GGG | - | chr3_1:76681528-76681547 | Msa0376580:intron | 35.0% | |
| TTTCTGAACTTGTATAGAGG+TGG | - | chr3_1:76681734-76681753 | Msa0376580:intron | 35.0% | |
| AATCCTATCTTGAACAGAGA+GGG | - | chr3_1:76681787-76681806 | Msa0376580:intron | 35.0% | |
| GAATTGCGTTGTGAATAAGT+TGG | - | chr3_1:76682088-76682107 | Msa0376580:intron | 35.0% | |
| !! | GTCATAAATACTGGTTTGCA+AGG | + | chr3_1:76682157-76682176 | None:intergenic | 35.0% |
| TTTGACTGGATAAACCAGAT+GGG | + | chr3_1:76682196-76682215 | None:intergenic | 35.0% | |
| !! | TTTTGACTGGATAAACCAGA+TGG | + | chr3_1:76682197-76682216 | None:intergenic | 35.0% |
| TTAGCACAGCTCCAATATAT+GGG | - | chr3_1:76682504-76682523 | Msa0376580:intron | 35.0% | |
| CTAGTAAAATCTCCTGCAAT+CGG | - | chr3_1:76682573-76682592 | Msa0376580:intron | 35.0% | |
| TAGATGCTATTAATTAGGGC+TGG | - | chr3_1:76682615-76682634 | Msa0376580:intron | 35.0% | |
| TATTAATTAGGGCTGGACAT+CGG | - | chr3_1:76682622-76682641 | Msa0376580:intron | 35.0% | |
| CTGTTATAACAGTCGGAATT+GGG | + | chr3_1:76682714-76682733 | None:intergenic | 35.0% | |
| ACTGTTATAACAGTCGGAAT+TGG | + | chr3_1:76682715-76682734 | None:intergenic | 35.0% | |
| AAAGCGACTGTTATAACAGT+CGG | + | chr3_1:76682721-76682740 | None:intergenic | 35.0% | |
| ! | GTTATAACAGTCGCTTTGTT+CGG | - | chr3_1:76682724-76682743 | Msa0376580:intron | 35.0% |
| TTTAAGTATTATGGGCCACA+TGG | + | chr3_1:76682784-76682803 | None:intergenic | 35.0% | |
| ACAGGGAAAAATCATGGTTA+TGG | + | chr3_1:76682875-76682894 | None:intergenic | 35.0% | |
| CTCTTTACAGGGAAAAATCA+TGG | + | chr3_1:76682881-76682900 | None:intergenic | 35.0% | |
| TGGACTTAAGTCTCTTTACA+GGG | + | chr3_1:76682892-76682911 | None:intergenic | 35.0% | |
| ATGGACTTAAGTCTCTTTAC+AGG | + | chr3_1:76682893-76682912 | None:intergenic | 35.0% | |
| ATATAAACTTAGGCCACTCT+TGG | - | chr3_1:76682943-76682962 | Msa0376580:intron | 35.0% | |
| ATAAGAAACCTTTAGACCCA+TGG | - | chr3_1:76683041-76683060 | Msa0376580:intron | 35.0% | |
| ACCATAATTGTCATTGCACT+AGG | - | chr3_1:76683134-76683153 | Msa0376580:intron | 35.0% | |
| ! | GCACAAAGGTACAATAATGT+AGG | + | chr3_1:76683573-76683592 | None:intergenic | 35.0% |
| ! | AGCTCTAGTGATAGTAATGT+AGG | + | chr3_1:76683625-76683644 | None:intergenic | 35.0% |
| TACATTACTATCACTAGAGC+TGG | - | chr3_1:76683624-76683643 | Msa0376580:intron | 35.0% | |
| GGATGCAGTTATAAATCTAG+AGG | + | chr3_1:76683650-76683669 | None:intergenic | 35.0% | |
| !! | TTATCCGTTTTAACCAACCA+CGG | + | chr3_1:76683945-76683964 | None:intergenic | 35.0% |
| TTGGTTAAAACGGATAAACC+AGG | - | chr3_1:76683948-76683967 | Msa0376580:intron | 35.0% | |
| GGACTGTTTCAATTTCTACT+CGG | - | chr3_1:76684151-76684170 | Msa0376580:intron | 35.0% | |
| AAACTAAATCCAACTGCCTA+GGG | + | chr3_1:76684219-76684238 | None:intergenic | 35.0% | |
| AAAACTAAATCCAACTGCCT+AGG | + | chr3_1:76684220-76684239 | None:intergenic | 35.0% | |
| ! | ATTTCTTTGAGAGAGAAGAG+AGG | + | chr3_1:76684341-76684360 | None:intergenic | 35.0% |
| TTAACCAGATTGAATAACCG+TGG | - | chr3_1:76684449-76684468 | Msa0376580:intron | 35.0% | |
| ACTCTCAATTTCCTATCTCT+AGG | - | chr3_1:76684505-76684524 | Msa0376580:intron | 35.0% | |
| ATCACTTCATTAATCCTACG+TGG | - | chr3_1:76685025-76685044 | Msa0376580:intron | 35.0% | |
| TGGTGAAATCAGATCAAAAC+AGG | + | chr3_1:76685232-76685251 | None:intergenic | 35.0% | |
| !!! | CTAGTGGTTTTCTTGTTTTG+TGG | + | chr3_1:76685384-76685403 | None:intergenic | 35.0% |
| !!! | TCAGGTTGTTTTTTAGGGTT+TGG | + | chr3_1:76685501-76685520 | None:intergenic | 35.0% |
| CATGCTGCAGAAGAAAATAA+GGG | + | chr3_1:76685544-76685563 | None:intergenic | 35.0% | |
| ACATGCTGCAGAAGAAAATA+AGG | + | chr3_1:76685545-76685564 | None:intergenic | 35.0% | |
| CAAAACTTACAAGTGTCCAA+AGG | + | chr3_1:76685735-76685754 | None:intergenic | 35.0% | |
| ! | TTGGACACTTGTAAGTTTTG+TGG | - | chr3_1:76685735-76685754 | Msa0376580:intron | 35.0% |
| GTATGGTGTGTTCATATCTA+TGG | - | chr3_1:76685803-76685822 | Msa0376580:intron | 35.0% | |
| !!! | GTGGATCTAGAGAAGTATTT+TGG | + | chr3_1:76686066-76686085 | None:intergenic | 35.0% |
| TTTGTAGCTGAAATAGCTAC+AGG | + | chr3_1:76686112-76686131 | None:intergenic | 35.0% | |
| TTAAATCACCCAGATACTCA+CGG | + | chr3_1:76686149-76686168 | None:intergenic | 35.0% | |
| CTCTTATAATCAGCTATGGA+AGG | - | chr3_1:76686179-76686198 | Msa0376580:intron | 35.0% | |
| AATGGAGTTACAACTAAGGA+TGG | - | chr3_1:76686206-76686225 | Msa0376580:intron | 35.0% | |
| ATGGAGTTACAACTAAGGAT+GGG | - | chr3_1:76686207-76686226 | Msa0376580:intron | 35.0% | |
| TGAGACTCAACTACTCTAAA+AGG | + | chr3_1:76686508-76686527 | None:intergenic | 35.0% | |
| !! | TCTTGAAGGGGTATTCAAAT+GGG | + | chr3_1:76686563-76686582 | None:intergenic | 35.0% |
| !! | TTCTTGAAGGGGTATTCAAA+TGG | + | chr3_1:76686564-76686583 | None:intergenic | 35.0% |
| ATCAATGAAATGGACAGTTG+GGG | + | chr3_1:76686722-76686741 | None:intergenic | 35.0% | |
| GTATCAATGAAATGGACAGT+TGG | + | chr3_1:76686724-76686743 | None:intergenic | 35.0% | |
| AAAAAGTTGAAGAGTCGTTG+AGG | - | chr3_1:76686815-76686834 | Msa0376580:exon | 35.0% | |
| AAAAGTTGAAGAGTCGTTGA+GGG | - | chr3_1:76686816-76686835 | Msa0376580:exon | 35.0% | |
| TCTTTGAGCTTCCATGTCAA+TGG | + | chr3_1:76680901-76680920 | None:intergenic | 40.0% | |
| TGGAAGCTCAAAGAGCAAAT+AGG | - | chr3_1:76680907-76680926 | Msa0376580:CDS | 40.0% | |
| TTCTCTTCTCCCTTGCTAAT+AGG | - | chr3_1:76680967-76680986 | Msa0376580:CDS | 40.0% | |
| ! | TGCAGGCTTCAATACCTTTT+TGG | - | chr3_1:76681092-76681111 | Msa0376580:CDS | 40.0% |
| ! | AGGCTTCAATACCTTTTTGG+AGG | - | chr3_1:76681095-76681114 | Msa0376580:CDS | 40.0% |
| TATCTTTGTCAGTGCTTCAC+AGG | - | chr3_1:76681275-76681294 | Msa0376580:CDS | 40.0% | |
| GAATCCTATCTTGAACAGAG+AGG | - | chr3_1:76681786-76681805 | Msa0376580:intron | 40.0% | |
| ATCCTATCTTGAACAGAGAG+GGG | - | chr3_1:76681788-76681807 | Msa0376580:intron | 40.0% | |
| AGAATGCGTGAAACGTGAAT+AGG | + | chr3_1:76682011-76682030 | None:intergenic | 40.0% | |
| AAAGAATGTATCAGCCCATC+TGG | - | chr3_1:76682179-76682198 | Msa0376580:intron | 40.0% | |
| GTAAGGGTAACAACTTCAGA+TGG | + | chr3_1:76682323-76682342 | None:intergenic | 40.0% | |
| TCAGTTGCACCAATTGTTCA+CGG | + | chr3_1:76682346-76682365 | None:intergenic | 40.0% | |
| AAAAGAGGTTGCTCTCTAGT+TGG | - | chr3_1:76682411-76682430 | Msa0376580:intron | 40.0% | |
| AAAGAGGTTGCTCTCTAGTT+GGG | - | chr3_1:76682412-76682431 | Msa0376580:intron | 40.0% | |
| ! | TAAAGAGTGCACTTCTTAGC+TGG | - | chr3_1:76682435-76682454 | Msa0376580:intron | 40.0% |
| CATATATTGGAGCTGTGCTA+AGG | + | chr3_1:76682505-76682524 | None:intergenic | 40.0% | |
| CTTAGCACAGCTCCAATATA+TGG | - | chr3_1:76682503-76682522 | Msa0376580:intron | 40.0% | |
| ACAGCTCCAATATATGGGAT+AGG | - | chr3_1:76682509-76682528 | Msa0376580:intron | 40.0% | |
| !! | CAATCGGATTTTGATGCAGT+TGG | - | chr3_1:76682589-76682608 | Msa0376580:intron | 40.0% |
| !!! | CTTGGATGGATTGAGGTTTT+GGG | + | chr3_1:76682670-76682689 | None:intergenic | 40.0% |
| !! | GTTCGGTTAAGACGGATTAA+CGG | - | chr3_1:76682741-76682760 | Msa0376580:intron | 40.0% |
| !! | TTCGGTTAAGACGGATTAAC+GGG | - | chr3_1:76682742-76682761 | Msa0376580:intron | 40.0% |
| TTAAATGACCTTGCCAAGAG+TGG | + | chr3_1:76682959-76682978 | None:intergenic | 40.0% | |
| GCCTAGTGCAATGACAATTA+TGG | + | chr3_1:76683138-76683157 | None:intergenic | 40.0% | |
| AATTGTCATTGCACTAGGCA+AGG | - | chr3_1:76683139-76683158 | Msa0376580:intron | 40.0% | |
| TGTACCTTTGTGCAACAGTT+TGG | - | chr3_1:76683580-76683599 | Msa0376580:intron | 40.0% | |
| GTACCTTTGTGCAACAGTTT+GGG | - | chr3_1:76683581-76683600 | Msa0376580:intron | 40.0% | |
| TAACCCAAACTGTTGCACAA+AGG | + | chr3_1:76683587-76683606 | None:intergenic | 40.0% | |
| ! | TTTAACCAACCACGGGTTAA+CGG | + | chr3_1:76683937-76683956 | None:intergenic | 40.0% |
| ! | TAACCCGTGGTTGGTTAAAA+CGG | - | chr3_1:76683938-76683957 | Msa0376580:intron | 40.0% |
| !! | TATCCGTTTTAACCAACCAC+GGG | + | chr3_1:76683944-76683963 | None:intergenic | 40.0% |
| AACGGATAAACCAGGTTACT+CGG | - | chr3_1:76683956-76683975 | Msa0376580:intron | 40.0% | |
| AACCCATGTATGGACATTGT+TGG | - | chr3_1:76683981-76684000 | Msa0376580:intron | 40.0% | |
| GTCCAACAATGTCCATACAT+GGG | + | chr3_1:76683986-76684005 | None:intergenic | 40.0% | |
| TGTCCAACAATGTCCATACA+TGG | + | chr3_1:76683987-76684006 | None:intergenic | 40.0% | |
| ATACTAGTATAGCAGCGGTT+CGG | + | chr3_1:76684057-76684076 | None:intergenic | 40.0% | |
| AACCGCTGCTATACTAGTAT+TGG | - | chr3_1:76684057-76684076 | Msa0376580:intron | 40.0% | |
| ACCGCTGCTATACTAGTATT+GGG | - | chr3_1:76684058-76684077 | Msa0376580:intron | 40.0% | |
| AGAAATTGAAACAGTCCCTG+TGG | + | chr3_1:76684148-76684167 | None:intergenic | 40.0% | |
| TGAGCAATAGAGGATTCGAA+AGG | + | chr3_1:76684304-76684323 | None:intergenic | 40.0% | |
| TTACTCACAGTGAGCAATAG+AGG | + | chr3_1:76684314-76684333 | None:intergenic | 40.0% | |
| AGTTAATCCGTCGTAAAGCT+AGG | + | chr3_1:76684367-76684386 | None:intergenic | 40.0% | |
| AACACTAGGAACCTAGAGAT+AGG | + | chr3_1:76684519-76684538 | None:intergenic | 40.0% | |
| GATCACAAAGACTCATCTCA+TGG | - | chr3_1:76684744-76684763 | Msa0376580:intron | 40.0% | |
| AACCAGAACCAACTATGAGT+TGG | - | chr3_1:76684838-76684857 | Msa0376580:intron | 40.0% | |
| ACCAGAACCAACTATGAGTT+GGG | - | chr3_1:76684839-76684858 | Msa0376580:intron | 40.0% | |
| AGACAGAAACAGAGCATAGA+CGG | + | chr3_1:76684899-76684918 | None:intergenic | 40.0% | |
| AAACAGGAATAAGAGCTCGA+CGG | + | chr3_1:76685216-76685235 | None:intergenic | 40.0% | |
| ! | GTGCATCAACACTAGTTTCT+TGG | + | chr3_1:76685307-76685326 | None:intergenic | 40.0% |
| ! | TGTTTTGTGGAGTTGTGTCT+GGG | + | chr3_1:76685371-76685390 | None:intergenic | 40.0% |
| !! | TTGTTTTGTGGAGTTGTGTC+TGG | + | chr3_1:76685372-76685391 | None:intergenic | 40.0% |
| CATGTTCGATCCAAAAACCA+TGG | - | chr3_1:76685560-76685579 | Msa0376580:intron | 40.0% | |
| ATCCAAAAACCATGGTCCTT+AGG | - | chr3_1:76685568-76685587 | Msa0376580:intron | 40.0% | |
| TCCAAAAACCATGGTCCTTA+GGG | - | chr3_1:76685569-76685588 | Msa0376580:intron | 40.0% | |
| AAACAAAACCCTAAGGACCA+TGG | + | chr3_1:76685580-76685599 | None:intergenic | 40.0% | |
| GTACGTGGTTTGACAAAAGA+TGG | - | chr3_1:76685677-76685696 | Msa0376580:intron | 40.0% | |
| TGTTCATTAGGCCTTCAATG+TGG | - | chr3_1:76685883-76685902 | Msa0376580:CDS | 40.0% | |
| TTTCCAAACCGTGAGTATCT+GGG | - | chr3_1:76686138-76686157 | Msa0376580:intron | 40.0% | |
| GAGTATCTGGGTGATTTAAC+TGG | - | chr3_1:76686150-76686169 | Msa0376580:intron | 40.0% | |
| TCAGCTATGGAAGGAGTAAA+TGG | - | chr3_1:76686188-76686207 | Msa0376580:intron | 40.0% | |
| TGGAGTTACAACTAAGGATG+GGG | - | chr3_1:76686208-76686227 | Msa0376580:intron | 40.0% | |
| !! | CTAAAAGCATCACCTTGCAA+TGG | + | chr3_1:76686448-76686467 | None:intergenic | 40.0% |
| ! | GCAAGGTGATGCTTTTAGTA+AGG | - | chr3_1:76686450-76686469 | Msa0376580:intron | 40.0% |
| !! | CTTGAAGGGGTATTCAAATG+GGG | + | chr3_1:76686562-76686581 | None:intergenic | 40.0% |
| GGTGAAGAAGAATCAGCATG+AGG | + | chr3_1:76681146-76681165 | None:intergenic | 45.0% | |
| GTGCTTCACAGGTACAAATG+TGG | - | chr3_1:76681286-76681305 | Msa0376580:intron | 45.0% | |
| TGAGCTTTGCAAAATCACGG+TGG | + | chr3_1:76681500-76681519 | None:intergenic | 45.0% | |
| CGGTGAGCTTTGCAAAATCA+CGG | + | chr3_1:76681503-76681522 | None:intergenic | 45.0% | |
| CAGAGAGCTACGACTGATAT+CGG | - | chr3_1:76681687-76681706 | Msa0376580:intron | 45.0% | |
| ATTTGCAGTACCATTCCTGC+TGG | - | chr3_1:76682290-76682309 | Msa0376580:intron | 45.0% | |
| TGGAAAATCACCAGCAGGAA+TGG | + | chr3_1:76682303-76682322 | None:intergenic | 45.0% | |
| TCAGATGGAAAATCACCAGC+AGG | + | chr3_1:76682308-76682327 | None:intergenic | 45.0% | |
| TACCCTTACCCGTGAACAAT+TGG | - | chr3_1:76682334-76682353 | Msa0376580:intron | 45.0% | |
| CACCAATTGTTCACGGGTAA+GGG | + | chr3_1:76682339-76682358 | None:intergenic | 45.0% | |
| CAGTTGCACCAATTGTTCAC+GGG | + | chr3_1:76682345-76682364 | None:intergenic | 45.0% | |
| CAATTGGTGCAACTGAAGCT+AGG | - | chr3_1:76682350-76682369 | Msa0376580:intron | 45.0% | |
| TGCACTTCTTAGCTGGAAGA+AGG | - | chr3_1:76682442-76682461 | Msa0376580:intron | 45.0% | |
| CTGCATCAAAATCCGATTGC+AGG | + | chr3_1:76682588-76682607 | None:intergenic | 45.0% | |
| !!! | GCTTGGATGGATTGAGGTTT+TGG | + | chr3_1:76682671-76682690 | None:intergenic | 45.0% |
| ! | GTCGCTTTGTTCGGTTAAGA+CGG | - | chr3_1:76682733-76682752 | Msa0376580:intron | 45.0% |
| !! | GTTAAGACGGATTAACGGGA+GGG | - | chr3_1:76682746-76682765 | Msa0376580:intron | 45.0% |
| AACCTTTAGACCCATGGTCA+AGG | - | chr3_1:76683047-76683066 | Msa0376580:intron | 45.0% | |
| CTATGTAGAGCCTTGACCAT+GGG | + | chr3_1:76683060-76683079 | None:intergenic | 45.0% | |
| ACTATGTAGAGCCTTGACCA+TGG | + | chr3_1:76683061-76683080 | None:intergenic | 45.0% | |
| CAGTTGCTGATGCTACAACA+TGG | - | chr3_1:76683260-76683279 | Msa0376580:intron | 45.0% | |
| CACATTGCTGCTAGATTGCT+AGG | + | chr3_1:76683805-76683824 | None:intergenic | 45.0% | |
| ATGTGTTAACTGGCCCAATC+CGG | - | chr3_1:76683897-76683916 | Msa0376580:intron | 45.0% | |
| ! | TTAACCAACCACGGGTTAAC+GGG | + | chr3_1:76683936-76683955 | None:intergenic | 45.0% |
| ACGGATAAACCAGGTTACTC+GGG | - | chr3_1:76683957-76683976 | Msa0376580:intron | 45.0% | |
| TTACTCGGGTAACCCATGTA+TGG | - | chr3_1:76683971-76683990 | Msa0376580:intron | 45.0% | |
| TGGACATTGTTGGACACCAA+TGG | - | chr3_1:76683991-76684010 | Msa0376580:intron | 45.0% | |
| CATTGTTGGACACCAATGGA+CGG | - | chr3_1:76683995-76684014 | Msa0376580:intron | 45.0% | |
| TACTAGTATAGCAGCGGTTC+GGG | + | chr3_1:76684056-76684075 | None:intergenic | 45.0% | |
| GCCCAATACTAGTATAGCAG+CGG | + | chr3_1:76684062-76684081 | None:intergenic | 45.0% | |
| GCTTCCACGGTTATTCAATC+TGG | + | chr3_1:76684456-76684475 | None:intergenic | 45.0% | |
| ACGTTCTGACTTTGCTTCCA+CGG | + | chr3_1:76684469-76684488 | None:intergenic | 45.0% | |
| ! | ACCCAACTCATAGTTGGTTC+TGG | + | chr3_1:76684843-76684862 | None:intergenic | 45.0% |
| GATCTCACCCAACTCATAGT+TGG | + | chr3_1:76684849-76684868 | None:intergenic | 45.0% | |
| GCAGACAAACTTTCCTATCG+TGG | - | chr3_1:76685050-76685069 | Msa0376580:intron | 45.0% | |
| TGGGACAAAGGATTTGTCAC+TGG | + | chr3_1:76685108-76685127 | None:intergenic | 45.0% | |
| TGGCACGATGCTTCATTCTT+AGG | - | chr3_1:76685162-76685181 | Msa0376580:intron | 45.0% | |
| AACAGGAATAAGAGCTCGAC+GGG | + | chr3_1:76685215-76685234 | None:intergenic | 45.0% | |
| !! | AGTGTTGATGCACTGTCATC+AGG | - | chr3_1:76685314-76685333 | Msa0376580:CDS | 45.0% |
| ACCTGGTGTCCAAGTTAAGA+AGG | - | chr3_1:76685339-76685358 | Msa0376580:CDS | 45.0% | |
| ! | ACCCTAAGGACCATGGTTTT+TGG | + | chr3_1:76685573-76685592 | None:intergenic | 45.0% |
| CGTGGTTTGACAAAAGATGG+AGG | - | chr3_1:76685680-76685699 | Msa0376580:intron | 45.0% | |
| CAAAAGATGGAGGCAGTAAC+TGG | - | chr3_1:76685690-76685709 | Msa0376580:intron | 45.0% | |
| ! | TAACTGGAGAAGCTTTGGCT+GGG | - | chr3_1:76685706-76685725 | Msa0376580:intron | 45.0% |
| GTTTCCAAACCGTGAGTATC+TGG | - | chr3_1:76686137-76686156 | Msa0376580:intron | 45.0% | |
| ! | ATTGTGTCACTCGTGTGGTT+TGG | + | chr3_1:76686790-76686809 | None:intergenic | 45.0% |
| ! | GACATATTGTGTCACTCGTG+TGG | + | chr3_1:76686795-76686814 | None:intergenic | 45.0% |
| AGCAAGGGAGAAGAGAACAG+TGG | + | chr3_1:76680964-76680983 | None:intergenic | 50.0% | |
| ! | TGTGTCGACGTGTCAAACAC+TGG | + | chr3_1:76681224-76681243 | None:intergenic | 50.0% |
| AGCCCCTCTCTGTTCAAGAT+AGG | + | chr3_1:76681793-76681812 | None:intergenic | 50.0% | |
| GCACCAATTGTTCACGGGTA+AGG | + | chr3_1:76682340-76682359 | None:intergenic | 50.0% | |
| AATTAGGGCTGGACATCGGT+CGG | - | chr3_1:76682626-76682645 | Msa0376580:intron | 50.0% | |
| !! | GGTTAAGACGGATTAACGGG+AGG | - | chr3_1:76682745-76682764 | Msa0376580:intron | 50.0% |
| AACTTAGGCCACTCTTGGCA+AGG | - | chr3_1:76682948-76682967 | Msa0376580:intron | 50.0% | |
| AGCCTTGACCATGGGTCTAA+AGG | + | chr3_1:76683052-76683071 | None:intergenic | 50.0% | |
| AGCAGCAATGTGAGAGACCA+TGG | - | chr3_1:76683813-76683832 | Msa0376580:intron | 50.0% | |
| ATAAGGTTGCCCTAGGCAGT+TGG | - | chr3_1:76684207-76684226 | Msa0376580:intron | 50.0% | |
| ! | AGAAGCTTGGGGTGCGATTT+TGG | + | chr3_1:76684922-76684941 | None:intergenic | 50.0% |
| AAAATCGCACCCCAAGCTTC+TGG | - | chr3_1:76684921-76684940 | Msa0376580:intron | 50.0% | |
| TGAAGTGATCGTGCCACGAT+TGG | + | chr3_1:76685014-76685033 | None:intergenic | 50.0% | |
| AAGTTTGTCTGCTGCCACGT+AGG | + | chr3_1:76685042-76685061 | None:intergenic | 50.0% | |
| TTTCGTGCCACGATGAAGTC+TGG | + | chr3_1:76685082-76685101 | None:intergenic | 50.0% | |
| ! | GTTTGCTGAACGTGGGACAA+AGG | + | chr3_1:76685120-76685139 | None:intergenic | 50.0% |
| !! | ATGAAGCATCGTGCCACGAT+GGG | + | chr3_1:76685158-76685177 | None:intergenic | 50.0% |
| !! | AATGAAGCATCGTGCCACGA+TGG | + | chr3_1:76685159-76685178 | None:intergenic | 50.0% |
| ! | GCCTTCTTAACTTGGACACC+AGG | + | chr3_1:76685343-76685362 | None:intergenic | 50.0% |
| GGGCTTAGGCCTTCTTAACT+TGG | + | chr3_1:76685351-76685370 | None:intergenic | 50.0% | |
| TCTGAACTGAAACGGCGCTA+GGG | + | chr3_1:76685412-76685431 | None:intergenic | 50.0% | |
| ATCTGAACTGAAACGGCGCT+AGG | + | chr3_1:76685413-76685432 | None:intergenic | 50.0% | |
| GGCAGTAACTGGAGAAGCTT+TGG | - | chr3_1:76685701-76685720 | Msa0376580:intron | 50.0% | |
| ! | GTAACTGGAGAAGCTTTGGC+TGG | - | chr3_1:76685705-76685724 | Msa0376580:intron | 50.0% |
| TCACCCAGATACTCACGGTT+TGG | + | chr3_1:76686144-76686163 | None:intergenic | 50.0% | |
| ! | TCAAGTTGCAGCAGCTACTG+AGG | - | chr3_1:76686235-76686254 | Msa0376580:intron | 50.0% |
| ! | GGACATCGGTCGGTTTAGGT+CGG | - | chr3_1:76682636-76682655 | Msa0376580:intron | 55.0% |
| ! | GGTCGGTTTAGGTCGGTAGT+CGG | - | chr3_1:76682643-76682662 | Msa0376580:intron | 55.0% |
| ! | GTCGGTTTAGGTCGGTAGTC+GGG | - | chr3_1:76682644-76682663 | Msa0376580:intron | 55.0% |
| CCTCAATCCATCCAAGCCCA+CGG | - | chr3_1:76682674-76682693 | Msa0376580:intron | 55.0% | |
| TTCTCAACCGTGGGCTTGGA+TGG | + | chr3_1:76682684-76682703 | None:intergenic | 55.0% | |
| CATGTTCTCAACCGTGGGCT+TGG | + | chr3_1:76682688-76682707 | None:intergenic | 55.0% | |
| AGCCCACGGTTGAGAACATG+TGG | - | chr3_1:76682688-76682707 | Msa0376580:intron | 55.0% | |
| GGCCACATGTTCTCAACCGT+GGG | + | chr3_1:76682693-76682712 | None:intergenic | 55.0% | |
| GGATTAACGGGAGGGTTGCT+CGG | - | chr3_1:76682754-76682773 | Msa0376580:intron | 55.0% | |
| GGGTTGCTCGGTTAACCATG+TGG | - | chr3_1:76682766-76682785 | Msa0376580:intron | 55.0% | |
| TGCTTGCTTGCTTCGCTCCA+TGG | + | chr3_1:76683833-76683852 | None:intergenic | 55.0% | |
| !! | GGTTAACGGGCTTTCTGGGT+CGG | + | chr3_1:76683923-76683942 | None:intergenic | 55.0% |
| !! | CACGGGTTAACGGGCTTTCT+GGG | + | chr3_1:76683927-76683946 | None:intergenic | 55.0% |
| AAAGCCCGTTAACCCGTGGT+TGG | - | chr3_1:76683929-76683948 | Msa0376580:intron | 55.0% | |
| ! | CATGGGTTACCCGAGTAACC+TGG | + | chr3_1:76683969-76683988 | None:intergenic | 55.0% |
| TGGACACCAATGGACGGATG+CGG | - | chr3_1:76684001-76684020 | Msa0376580:intron | 55.0% | |
| AATGGACGGATGCGGATGGT+GGG | - | chr3_1:76684009-76684028 | Msa0376580:intron | 55.0% | |
| ! | AGTATAGCAGCGGTTCGGGT+CGG | + | chr3_1:76684052-76684071 | None:intergenic | 55.0% |
| GAGATCCACTGCGTGTTCTG+CGG | - | chr3_1:76684863-76684882 | Msa0376580:intron | 55.0% | |
| AACAGAGCATAGACGGCACC+AGG | + | chr3_1:76684892-76684911 | None:intergenic | 55.0% | |
| CAGAAGCGACCAGAAGCTTG+GGG | + | chr3_1:76684933-76684952 | None:intergenic | 55.0% | |
| CCAGAAGCGACCAGAAGCTT+GGG | + | chr3_1:76684934-76684953 | None:intergenic | 55.0% | |
| TCGTAACGTGGCACGATGGT+GGG | + | chr3_1:76684990-76685009 | None:intergenic | 55.0% | |
| ATCGTAACGTGGCACGATGG+TGG | + | chr3_1:76684991-76685010 | None:intergenic | 55.0% | |
| TGGATCGTAACGTGGCACGA+TGG | + | chr3_1:76684994-76685013 | None:intergenic | 55.0% | |
| GCCACGTTACGATCCAATCG+TGG | - | chr3_1:76684998-76685017 | Msa0376580:intron | 55.0% | |
| GCCACGATTGGATCGTAACG+TGG | + | chr3_1:76685002-76685021 | None:intergenic | 55.0% | |
| ! | AGTCTGGAACGTGCCACGAT+AGG | + | chr3_1:76685066-76685085 | None:intergenic | 55.0% |
| GCACGTTCCAGACTTCATCG+TGG | - | chr3_1:76685072-76685091 | Msa0376580:intron | 55.0% | |
| ! | GTGGCACGTTTGCTGAACGT+GGG | + | chr3_1:76685127-76685146 | None:intergenic | 55.0% |
| TGCACTGTCATCAGGCTACC+TGG | - | chr3_1:76685322-76685341 | Msa0376580:CDS | 55.0% | |
| GTGGAGTTGTGTCTGGGCTT+AGG | + | chr3_1:76685365-76685384 | None:intergenic | 55.0% | |
| ! | AGCTTTGGCTGGGCAACCTT+TGG | - | chr3_1:76685716-76685735 | Msa0376580:intron | 55.0% |
| AGTTGCAGCAGCTACTGAGG+AGG | - | chr3_1:76686238-76686257 | Msa0376580:intron | 55.0% | |
| GCAGCTACTGAGGAGGTAAC+TGG | - | chr3_1:76686245-76686264 | Msa0376580:intron | 55.0% | |
| ACTGAGGAGGTAACTGGAGC+TGG | - | chr3_1:76686251-76686270 | Msa0376580:intron | 55.0% | |
| ! | GGCTGGACATCGGTCGGTTT+AGG | - | chr3_1:76682632-76682651 | Msa0376580:intron | 60.0% |
| !! | CCGTGGGCTTGGATGGATTG+AGG | + | chr3_1:76682677-76682696 | None:intergenic | 60.0% |
| GGGCCACATGTTCTCAACCG+TGG | + | chr3_1:76682694-76682713 | None:intergenic | 60.0% | |
| CTTTCTGGGTCGGCCGGATT+GGG | + | chr3_1:76683913-76683932 | None:intergenic | 60.0% | |
| !! | CCACGGGTTAACGGGCTTTC+TGG | + | chr3_1:76683928-76683947 | None:intergenic | 60.0% |
| CCAGAAAGCCCGTTAACCCG+TGG | - | chr3_1:76683925-76683944 | Msa0376580:intron | 60.0% | |
| CACCAATGGACGGATGCGGA+TGG | - | chr3_1:76684005-76684024 | Msa0376580:intron | 60.0% | |
| CACCATCCGCATCCGTCCAT+TGG | + | chr3_1:76684010-76684029 | None:intergenic | 60.0% | |
| CAATGGACGGATGCGGATGG+TGG | - | chr3_1:76684008-76684027 | Msa0376580:intron | 60.0% | |
| !! | CGGATGCGGATGGTGGGAAA+TGG | - | chr3_1:76684015-76684034 | Msa0376580:intron | 60.0% |
| GGAAACCGCAGAACACGCAG+TGG | + | chr3_1:76684871-76684890 | None:intergenic | 60.0% | |
| CTGCGTGTTCTGCGGTTTCC+TGG | - | chr3_1:76684871-76684890 | Msa0376580:intron | 60.0% | |
| CCCAAGCTTCTGGTCGCTTC+TGG | - | chr3_1:76684931-76684950 | Msa0376580:intron | 60.0% | |
| GCCAGAAGCGACCAGAAGCT+TGG | + | chr3_1:76684935-76684954 | None:intergenic | 60.0% | |
| ! | CGTGGCACGTTTGCTGAACG+TGG | + | chr3_1:76685128-76685147 | None:intergenic | 60.0% |
| CGGCGCTAGGGTTTCACTAG+TGG | + | chr3_1:76685400-76685419 | None:intergenic | 60.0% | |
| GCAGCTGCTGCACCATTGCA+AGG | - | chr3_1:76686433-76686452 | Msa0376580:intron | 60.0% | |
| GCTTTCTGGGTCGGCCGGAT+TGG | + | chr3_1:76683914-76683933 | None:intergenic | 65.0% | |
| ! | AACGGGCTTTCTGGGTCGGC+CGG | + | chr3_1:76683919-76683938 | None:intergenic | 65.0% |
| !! | CGGTTCGGGTCGGTTTTCGC+TGG | + | chr3_1:76684042-76684061 | None:intergenic | 65.0% |
| GCCACGAGATGCTCCCATCG+TGG | - | chr3_1:76685142-76685161 | Msa0376580:intron | 65.0% | |
| !! | GCCACGATGGGAGCATCTCG+TGG | + | chr3_1:76685146-76685165 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 76680870 | 76686843 | 76680870 | ID=Msa0376580;Name=Msa0376580 |
| chr3_1 | mRNA | 76680870 | 76686843 | 76680870 | ID=Msa0376580-mRNA-1;Parent=Msa0376580;Name=Msa0376580-mRNA-1;_AED=0.40;_eAED=0.49;_QI=13|0.5|0.6|1|0.25|0.6|5|0|329 |
| chr3_1 | exon | 76680870 | 76681300 | 76680870 | ID=Msa0376580-mRNA-1:exon:18308;Parent=Msa0376580-mRNA-1 |
| chr3_1 | exon | 76685183 | 76685415 | 76685183 | ID=Msa0376580-mRNA-1:exon:18307;Parent=Msa0376580-mRNA-1 |
| chr3_1 | exon | 76685845 | 76685962 | 76685845 | ID=Msa0376580-mRNA-1:exon:18306;Parent=Msa0376580-mRNA-1 |
| chr3_1 | exon | 76686515 | 76686616 | 76686515 | ID=Msa0376580-mRNA-1:exon:18305;Parent=Msa0376580-mRNA-1 |
| chr3_1 | exon | 76686725 | 76686843 | 76686725 | ID=Msa0376580-mRNA-1:exon:18304;Parent=Msa0376580-mRNA-1 |
| chr3_1 | five_prime_UTR | 76686831 | 76686843 | 76686831 | ID=Msa0376580-mRNA-1:five_prime_utr;Parent=Msa0376580-mRNA-1 |
| chr3_1 | CDS | 76686725 | 76686830 | 76686725 | ID=Msa0376580-mRNA-1:cds;Parent=Msa0376580-mRNA-1 |
| chr3_1 | CDS | 76686515 | 76686616 | 76686515 | ID=Msa0376580-mRNA-1:cds;Parent=Msa0376580-mRNA-1 |
| chr3_1 | CDS | 76685845 | 76685962 | 76685845 | ID=Msa0376580-mRNA-1:cds;Parent=Msa0376580-mRNA-1 |
| chr3_1 | CDS | 76685183 | 76685415 | 76685183 | ID=Msa0376580-mRNA-1:cds;Parent=Msa0376580-mRNA-1 |
| chr3_1 | CDS | 76680870 | 76681300 | 76680870 | ID=Msa0376580-mRNA-1:cds;Parent=Msa0376580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
