Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516380 | XP_004516124.1 | 48.819 | 127 | 65 | 0 | 223 | 349 | 87 | 213 | 4.72e-37 | 143 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516380 | A0A1S2Z6X0 | 48.819 | 127 | 65 | 0 | 223 | 349 | 87 | 213 | 2.25e-37 | 143 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0373930 | Msa0516380 | 0.807259 | 5.516000e-50 | -8.615850e-47 |
| Msa0376580 | Msa0516380 | 0.918802 | 9.939135e-87 | -8.615850e-47 |
| Msa0516380 | Msa1084230 | 0.804472 | 2.125484e-49 | -8.615850e-47 |
| Msa0516380 | Msa1084250 | 0.910309 | 2.163264e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516380 | MtrunA17_Chr8g0354631 | 50.394 | 127 | 63 | 0 | 223 | 349 | 158 | 284 | 3.13e-39 | 147 |
| Msa0516380 | MtrunA17_Chr5g0402891 | 54.032 | 124 | 57 | 0 | 226 | 349 | 46 | 169 | 9.02e-37 | 140 |
| Msa0516380 | MtrunA17_Chr5g0395271 | 58.209 | 134 | 22 | 3 | 71 | 204 | 114 | 213 | 9.85e-36 | 132 |
| Msa0516380 | MtrunA17_Chr4g0052601 | 33.742 | 163 | 101 | 2 | 182 | 343 | 75 | 231 | 9.68e-23 | 98.6 |
| Msa0516380 | MtrunA17_Chr7g0263231 | 34.234 | 111 | 73 | 0 | 228 | 338 | 545 | 655 | 2.37e-14 | 74.3 |
| Msa0516380 | MtrunA17_Chr7g0263261 | 30.233 | 129 | 87 | 1 | 213 | 338 | 468 | 596 | 2.96e-13 | 71.2 |
| Msa0516380 | MtrunA17_Chr2g0308821 | 30.081 | 123 | 85 | 1 | 228 | 349 | 133 | 255 | 5.24e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0516380 | AT1G65020.1 | 38.636 | 132 | 44 | 5 | 73 | 204 | 116 | 210 | 1.91e-13 | 70.9 |
Find 65 sgRNAs with CRISPR-Local
Find 404 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCAAGAAAGATTGTGTTTA+GGG | 0.198355 | 3_4:+67903942 | Msa0516380:CDS |
| CTTAGCACAGCTCCAATATA+TGG | 0.238263 | 3_4:+67899869 | Msa0516380:CDS |
| ATCTTGTTCTCCTTACTAAA+AGG | 0.244750 | 3_4:+67898542 | Msa0516380:CDS |
| AGATTTGGTTTCATATATAT+TGG | 0.248737 | 3_4:+67899333 | Msa0516380:CDS |
| CTTCAAGAAAGATTGTGTTT+AGG | 0.294344 | 3_4:+67903941 | Msa0516380:CDS |
| ACTTCAAAATTTGCCAGATT+TGG | 0.297254 | 3_4:+67899318 | Msa0516380:CDS |
| TCAGAAACATACCATAGTTT+AGG | 0.300619 | 3_4:-67899223 | None:intergenic |
| TGAGACTCAACTACTCTAAA+AGG | 0.310066 | 3_4:-67903871 | None:intergenic |
| AACTAACCTATCCCATATAT+TGG | 0.313425 | 3_4:-67899881 | None:intergenic |
| TTCTCTTCTCCCTTGCTAAT+AGG | 0.341493 | 3_4:+67898332 | Msa0516380:CDS |
| TTCTTGAAGGGGTATTCAAA+TGG | 0.363906 | 3_4:-67903927 | None:intergenic |
| ACATACCATAGTTTAGGATT+TGG | 0.369028 | 3_4:-67899217 | None:intergenic |
| TCCATTCAGTATCAATGAAA+TGG | 0.370949 | 3_4:-67904095 | None:intergenic |
| TACTACCAAATCCTAAACTA+TGG | 0.377578 | 3_4:+67899212 | Msa0516380:CDS |
| GCACCAATTGTTCACGGGTA+AGG | 0.391578 | 3_4:-67899703 | None:intergenic |
| TACCCTTACCCGTGAACAAT+TGG | 0.395683 | 3_4:+67899700 | Msa0516380:CDS |
| TATCAATGAAATGGACAGTT+GGG | 0.396600 | 3_4:-67904086 | None:intergenic |
| TCTTGAAGGGGTATTCAAAT+GGG | 0.402321 | 3_4:-67903926 | None:intergenic |
| TCCATTTCATTGATACTGAA+TGG | 0.412760 | 3_4:+67904094 | Msa0516380:CDS |
| CTAAACACAATCTTTCTTGA+AGG | 0.421143 | 3_4:-67903940 | None:intergenic |
| AATATATATGAAACCAAATC+TGG | 0.430418 | 3_4:-67899331 | None:intergenic |
| TAAAGAGTGCACTTCTTAGC+TGG | 0.440342 | 3_4:+67899801 | Msa0516380:CDS |
| AAAGAGGTTGCTCTCTAGTT+GGG | 0.453648 | 3_4:+67899778 | Msa0516380:CDS |
| AAAAGAGGTTGCTCTCTAGT+TGG | 0.458121 | 3_4:+67899777 | Msa0516380:CDS |
| TCTTTGAGCTTCCATGTCAA+TGG | 0.459562 | 3_4:-67898263 | None:intergenic |
| CACCAATTGTTCACGGGTAA+GGG | 0.472652 | 3_4:-67899702 | None:intergenic |
| TGGAAGCTCAAAGAGCAAAT+AGG | 0.475178 | 3_4:+67898272 | Msa0516380:CDS |
| TGGAAAATCACCAGCAGGAA+TGG | 0.484754 | 3_4:-67899666 | None:intergenic |
| GAAGAGTCGTTGAGGGATTG+AGG | 0.486035 | 3_4:+67904189 | Msa0516380:CDS |
| AGTAAGGAGAACAAGATCAA+TGG | 0.488423 | 3_4:-67898536 | None:intergenic |
| ATTGTGTCACTCGTGTGGTT+TGG | 0.489867 | 3_4:-67904153 | None:intergenic |
| GTGAGTAAATTGACATGGAT+TGG | 0.494445 | 3_4:-67898241 | None:intergenic |
| AGCCCCTCTCTGTTCAAGAT+AGG | 0.496950 | 3_4:-67899155 | None:intergenic |
| TTAGCACAGCTCCAATATAT+GGG | 0.498327 | 3_4:+67899870 | Msa0516380:CDS |
| TAAACACAATCTTTCTTGAA+GGG | 0.504065 | 3_4:-67903939 | None:intergenic |
| AAAAGTTGAAGAGTCGTTGA+GGG | 0.509511 | 3_4:+67904182 | Msa0516380:CDS |
| CTCTAAAAGGAAGTTTAGAA+AGG | 0.509865 | 3_4:-67903858 | None:intergenic |
| TCAGTTGCACCAATTGTTCA+CGG | 0.521759 | 3_4:-67899709 | None:intergenic |
| TTACTAGTTAGAAATTCTCT+AGG | 0.524564 | 3_4:-67899184 | None:intergenic |
| CAGTTGCACCAATTGTTCAC+GGG | 0.536510 | 3_4:-67899708 | None:intergenic |
| ATTTGCAGTACCATTCCTGC+TGG | 0.540904 | 3_4:+67899656 | Msa0516380:intron |
| CAATTTACTCACCATTGACA+TGG | 0.548406 | 3_4:+67898252 | Msa0516380:CDS |
| TGCACTTCTTAGCTGGAAGA+AGG | 0.549066 | 3_4:+67899808 | Msa0516380:CDS |
| CAATTGGTGCAACTGAAGCT+AGG | 0.551121 | 3_4:+67899716 | Msa0516380:CDS |
| GTATCAATGAAATGGACAGT+TGG | 0.562063 | 3_4:-67904087 | None:intergenic |
| CATATATTGGAGCTGTGCTA+AGG | 0.567562 | 3_4:-67899868 | None:intergenic |
| CTTGAAGGGGTATTCAAATG+GGG | 0.567978 | 3_4:-67903925 | None:intergenic |
| GCAGCTGCTGCACCATTGCA+AGG | 0.568115 | 3_4:+67903799 | Msa0516380:CDS |
| AATCCTATCTTGAACAGAGA+GGG | 0.568927 | 3_4:+67899152 | Msa0516380:CDS |
| ACAGCTCCAATATATGGGAT+AGG | 0.575735 | 3_4:+67899875 | Msa0516380:CDS |
| AAACACAATCTTTCTTGAAG+GGG | 0.576428 | 3_4:-67903938 | None:intergenic |
| AGAACAAGATCAATGGTTTG+TGG | 0.580661 | 3_4:-67898529 | None:intergenic |
| TCAGATGGAAAATCACCAGC+AGG | 0.586827 | 3_4:-67899671 | None:intergenic |
| CAATGGTGAGTAAATTGACA+TGG | 0.601830 | 3_4:-67898246 | None:intergenic |
| AAATGAAAGACCTATTAGCA+AGG | 0.610297 | 3_4:-67898342 | None:intergenic |
| AATGAAAGACCTATTAGCAA+GGG | 0.612530 | 3_4:-67898341 | None:intergenic |
| GACATATTGTGTCACTCGTG+TGG | 0.615371 | 3_4:-67904158 | None:intergenic |
| CTAAAAGCATCACCTTGCAA+TGG | 0.621536 | 3_4:-67903811 | None:intergenic |
| ATCAATGAAATGGACAGTTG+GGG | 0.624130 | 3_4:-67904085 | None:intergenic |
| GTAAGGGTAACAACTTCAGA+TGG | 0.625627 | 3_4:-67899686 | None:intergenic |
| ATCCTATCTTGAACAGAGAG+GGG | 0.651255 | 3_4:+67899153 | Msa0516380:CDS |
| AGTTTACTATAGAAGTCAAG+CGG | 0.674051 | 3_4:-67904050 | None:intergenic |
| AGCAAGGGAGAAGAGAACAG+TGG | 0.681694 | 3_4:-67898326 | None:intergenic |
| GAATCCTATCTTGAACAGAG+AGG | 0.702978 | 3_4:+67899151 | Msa0516380:CDS |
| GGTGAAGAAGAATCAGCATG+AGG | 0.709031 | 3_4:-67898508 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATGTAATTTTAAGTATTAT+GGG | - | chr3_4:67900158-67900177 | None:intergenic | 10.0% |
| !!! | TTATGTAATTTTAAGTATTA+TGG | - | chr3_4:67900159-67900178 | None:intergenic | 10.0% |
| !! | TTAAACAAAGTAAATAAAAT+GGG | + | chr3_4:67901613-67901632 | Msa0516380:intron | 10.0% |
| !! | TACAAACAAAAAAATAAAAA+GGG | - | chr3_4:67903026-67903045 | None:intergenic | 10.0% |
| !!! | AATAAAAATACCTTTTAGTA+AGG | - | chr3_4:67898555-67898574 | None:intergenic | 15.0% |
| !!! | ACACATTTTACAATTTATTA+TGG | + | chr3_4:67898604-67898623 | Msa0516380:intron | 15.0% |
| !!! | ATTCTCTTTTAAATAGTTAT+TGG | + | chr3_4:67899392-67899411 | Msa0516380:intron | 15.0% |
| !!! | CTTTTTTATTTTGTTTTTGA+TGG | - | chr3_4:67899762-67899781 | None:intergenic | 15.0% |
| !! | TCAAAAACAAAATAAAAAAG+AGG | + | chr3_4:67899762-67899781 | Msa0516380:CDS | 15.0% |
| !!! | CTGGATTTTATATTAAAAAA+TGG | - | chr3_4:67900278-67900297 | None:intergenic | 15.0% |
| !! | CATTAAGTAAATATAAACTT+AGG | + | chr3_4:67900299-67900318 | Msa0516380:intron | 15.0% |
| !! | AAGAATAAAACAAAAAGTAA+GGG | + | chr3_4:67901051-67901070 | Msa0516380:intron | 15.0% |
| !! | AAGGATGTATTAAATTTATA+AGG | + | chr3_4:67901556-67901575 | Msa0516380:intron | 15.0% |
| !! | CTTAAACAAAGTAAATAAAA+TGG | + | chr3_4:67901612-67901631 | Msa0516380:intron | 15.0% |
| !! | TTAAACAAAATTACTATTTC+AGG | + | chr3_4:67901908-67901927 | Msa0516380:intron | 15.0% |
| !!! | ATTTTTTTTTATCAGAAATC+AGG | - | chr3_4:67902885-67902904 | None:intergenic | 15.0% |
| !! | GTACAAACAAAAAAATAAAA+AGG | - | chr3_4:67903027-67903046 | None:intergenic | 15.0% |
| !!! | TTACTACTATTTTCATAATT+TGG | + | chr3_4:67903381-67903400 | Msa0516380:intron | 15.0% |
| !!! | AGTAAGTTTTAATATGATTA+TGG | + | chr3_4:67903751-67903770 | Msa0516380:intron | 15.0% |
| !! | AAAAAGAAAACAGCAAAAAT+AGG | - | chr3_4:67898430-67898449 | None:intergenic | 20.0% |
| !! | CAACTAAAGGAAAAAAAAAA+TGG | - | chr3_4:67898749-67898768 | None:intergenic | 20.0% |
| !!! | CTTTTTTTACTATTCTGATT+AGG | + | chr3_4:67898933-67898952 | Msa0516380:intron | 20.0% |
| !! | AATATATATGAAACCAAATC+TGG | - | chr3_4:67899334-67899353 | None:intergenic | 20.0% |
| !!! | AGATTTGGTTTCATATATAT+TGG | + | chr3_4:67899333-67899352 | Msa0516380:CDS | 20.0% |
| !! | GTTTATATTTACTTAATGAC+TGG | - | chr3_4:67900297-67900316 | None:intergenic | 20.0% |
| !! | AATGGCCTAATTAAATATAA+GGG | - | chr3_4:67900358-67900377 | None:intergenic | 20.0% |
| !! | GTTTCTTGAATTATATTGAA+TGG | - | chr3_4:67900376-67900395 | None:intergenic | 20.0% |
| !!! | CATTGTAAATTTTAAATTGC+TGG | - | chr3_4:67900551-67900570 | None:intergenic | 20.0% |
| !! | ATGTAAATTATGTAGTATTC+TGG | - | chr3_4:67900590-67900609 | None:intergenic | 20.0% |
| !! | GAATACTACATAATTTACAT+TGG | + | chr3_4:67900590-67900609 | Msa0516380:intron | 20.0% |
| !!! | TATTAATTTGAACTCAATCA+AGG | - | chr3_4:67900772-67900791 | None:intergenic | 20.0% |
| !! | TAATGATATTTATTTGAGTG+TGG | - | chr3_4:67900829-67900848 | None:intergenic | 20.0% |
| !! | TTTACTATGATGAAATATGT+TGG | - | chr3_4:67900889-67900908 | None:intergenic | 20.0% |
| !! | GAAGAATAAAACAAAAAGTA+AGG | + | chr3_4:67901050-67901069 | Msa0516380:intron | 20.0% |
| !! | AAAATGTCTTCAAACATATT+AGG | + | chr3_4:67901229-67901248 | Msa0516380:intron | 20.0% |
| !! | AAATGTCTTCAAACATATTA+GGG | + | chr3_4:67901230-67901249 | Msa0516380:intron | 20.0% |
| !!! | TTTATTACTTCGATAGTTTT+TGG | - | chr3_4:67901475-67901494 | None:intergenic | 20.0% |
| !!! | AAATAAAATGGGTTGATAAT+TGG | + | chr3_4:67901624-67901643 | Msa0516380:intron | 20.0% |
| !!! | CTTTTATAGACACAAAATTA+GGG | + | chr3_4:67902320-67902339 | Msa0516380:intron | 20.0% |
| !!! | TTTATTTTTTTGTTTGTACG+TGG | + | chr3_4:67903028-67903047 | Msa0516380:intron | 20.0% |
| !!! | TTTTCTTTTTTCATTGTTGC+AGG | + | chr3_4:67898440-67898459 | Msa0516380:intron | 25.0% |
| ! | TTACAATTTATTATGGTGTC+TGG | + | chr3_4:67898611-67898630 | Msa0516380:intron | 25.0% |
| ! | ATAAACATTAACCACATTGA+TGG | + | chr3_4:67898718-67898737 | Msa0516380:intron | 25.0% |
| ! | ACATACATACAAACAACTAA+AGG | - | chr3_4:67898762-67898781 | None:intergenic | 25.0% |
| ! | TGTATGTATGTTTGTAATCT+AGG | + | chr3_4:67898771-67898790 | Msa0516380:intron | 25.0% |
| ! | GTATGTATGTTTGTAATCTA+GGG | + | chr3_4:67898772-67898791 | Msa0516380:intron | 25.0% |
| ! | TATGTATGTTTGTAATCTAG+GGG | + | chr3_4:67898773-67898792 | Msa0516380:intron | 25.0% |
| !! | TAAGTGCTTGTTTGAATTTT+CGG | - | chr3_4:67898888-67898907 | None:intergenic | 25.0% |
| ! | TTACAATTGAGAGTAATGAA+TGG | + | chr3_4:67898981-67899000 | Msa0516380:intron | 25.0% |
| ! | TTACTAGTTAGAAATTCTCT+AGG | - | chr3_4:67899187-67899206 | None:intergenic | 25.0% |
| ! | TCATATATATTGGCATGTAA+TGG | + | chr3_4:67899343-67899362 | Msa0516380:intron | 25.0% |
| !!! | AATACTGTGTAATTTCTAGT+TGG | + | chr3_4:67899432-67899451 | Msa0516380:intron | 25.0% |
| ! | ATTCTTTACGTCATAAATAC+TGG | - | chr3_4:67899532-67899551 | None:intergenic | 25.0% |
| !! | TAAATTACTCAACTTTTGAC+TGG | - | chr3_4:67899576-67899595 | None:intergenic | 25.0% |
| ! | ATTCGAAAGATAAGAACAAA+TGG | - | chr3_4:67899908-67899927 | None:intergenic | 25.0% |
| ! | GATGTAGATGCTATTAATTA+GGG | + | chr3_4:67899977-67899996 | Msa0516380:intron | 25.0% |
| ! | TGGTTTCTTAAAATATCAGT+AGG | - | chr3_4:67900221-67900240 | None:intergenic | 25.0% |
| !! | CTAATTAAATATAAGGGCAT+AGG | - | chr3_4:67900352-67900371 | None:intergenic | 25.0% |
| ! | CTATGCCCTTATATTTAATT+AGG | + | chr3_4:67900350-67900369 | Msa0516380:intron | 25.0% |
| ! | GAATGGCCTAATTAAATATA+AGG | - | chr3_4:67900359-67900378 | None:intergenic | 25.0% |
| !! | AGGTTTCTTATTTATGGTTA+TGG | - | chr3_4:67900398-67900417 | None:intergenic | 25.0% |
| !! | GTCTAAAGGTTTCTTATTTA+TGG | - | chr3_4:67900404-67900423 | None:intergenic | 25.0% |
| !! | TTATATTGTCTCTTTTTGTG+CGG | - | chr3_4:67900669-67900688 | None:intergenic | 25.0% |
| !!! | ATTCTTCTTTTTTCAAGTCT+GGG | - | chr3_4:67901037-67901056 | None:intergenic | 25.0% |
| !!! | TATTCTTCTTTTTTCAAGTC+TGG | - | chr3_4:67901038-67901057 | None:intergenic | 25.0% |
| ! | TATGTTTAATGCTTATGCTA+AGG | - | chr3_4:67901128-67901147 | None:intergenic | 25.0% |
| ! | GATTAATAGGGTTATAACTT+AGG | - | chr3_4:67901793-67901812 | None:intergenic | 25.0% |
| ! | ATCTGGTTAAGAGATTAATA+GGG | - | chr3_4:67901805-67901824 | None:intergenic | 25.0% |
| ! | AATCTGGTTAAGAGATTAAT+AGG | - | chr3_4:67901806-67901825 | None:intergenic | 25.0% |
| ! | AAATTGAGAGTTATGACTTA+AGG | - | chr3_4:67901862-67901881 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTAACTCAACACT+AGG | - | chr3_4:67901899-67901918 | None:intergenic | 25.0% |
| ! | TATTTCAGGATTAAAAGCTA+GGG | + | chr3_4:67901922-67901941 | Msa0516380:intron | 25.0% |
| ! | CAATCACATAAATTGATCTT+AGG | - | chr3_4:67901965-67901984 | None:intergenic | 25.0% |
| !! | GCTTTTATAGACACAAAATT+AGG | + | chr3_4:67902319-67902338 | Msa0516380:intron | 25.0% |
| ! | AGTCAATTACTTGTAATTCA+TGG | - | chr3_4:67902618-67902637 | None:intergenic | 25.0% |
| ! | ACTCTCAAAACATTACAAAA+AGG | + | chr3_4:67902635-67902654 | Msa0516380:intron | 25.0% |
| ! | AAACAATATCTGAACTGAAA+CGG | - | chr3_4:67902786-67902805 | None:intergenic | 25.0% |
| !!! | AGAAATCAGGTTGTTTTTTA+GGG | - | chr3_4:67902872-67902891 | None:intergenic | 25.0% |
| ! | AAACTAAAAACAAAACCCTA+AGG | - | chr3_4:67902953-67902972 | None:intergenic | 25.0% |
| ! | AATAAAGATGTCATTGTATG+TGG | - | chr3_4:67903451-67903470 | None:intergenic | 25.0% |
| !! | TTTTCTCTTATAATCAGCTA+TGG | + | chr3_4:67903541-67903560 | Msa0516380:intron | 25.0% |
| ! | TGCATATTAAAACTCATTGT+TGG | - | chr3_4:67903645-67903664 | None:intergenic | 25.0% |
| ! | TAAACACAATCTTTCTTGAA+GGG | - | chr3_4:67903942-67903961 | None:intergenic | 25.0% |
| ! | TTCAAGAAAGATTGTGTTTA+GGG | + | chr3_4:67903942-67903961 | Msa0516380:CDS | 25.0% |
| ! | CTGAATGGAAATATCAAAAA+AGG | + | chr3_4:67904109-67904128 | Msa0516380:CDS | 25.0% |
| AATGAAAGACCTATTAGCAA+GGG | - | chr3_4:67898344-67898363 | None:intergenic | 30.0% | |
| AAATGAAAGACCTATTAGCA+AGG | - | chr3_4:67898345-67898364 | None:intergenic | 30.0% | |
| TGATGAAGCTGAAAATTGAT+GGG | - | chr3_4:67898406-67898425 | None:intergenic | 30.0% | |
| ATGATGAAGCTGAAAATTGA+TGG | - | chr3_4:67898407-67898426 | None:intergenic | 30.0% | |
| ATCTTGTTCTCCTTACTAAA+AGG | + | chr3_4:67898542-67898561 | Msa0516380:CDS | 30.0% | |
| TACAAATGTGGTTGAGATTA+AGG | + | chr3_4:67898663-67898682 | Msa0516380:intron | 30.0% | |
| ATGTATGTTTGTAATCTAGG+GGG | + | chr3_4:67898774-67898793 | Msa0516380:intron | 30.0% | |
| ! | ATTTTGCAAAAGCTGCATTT+TGG | - | chr3_4:67898827-67898846 | None:intergenic | 30.0% |
| ! | CTTTTGCAAAATCATGGTAA+AGG | + | chr3_4:67898835-67898854 | Msa0516380:intron | 30.0% |
| GAAAATTCAAACAAGCACTT+AGG | + | chr3_4:67898887-67898906 | Msa0516380:intron | 30.0% | |
| CAATTGTAACTGAGCTTAAT+TGG | - | chr3_4:67898970-67898989 | None:intergenic | 30.0% | |
| ! | CATTTTCTGAACTTGTATAG+AGG | + | chr3_4:67899096-67899115 | Msa0516380:intron | 30.0% |
| TACTACCAAATCCTAAACTA+TGG | + | chr3_4:67899212-67899231 | Msa0516380:CDS | 30.0% | |
| ! | ACATACCATAGTTTAGGATT+TGG | - | chr3_4:67899220-67899239 | None:intergenic | 30.0% |
| TCAGAAACATACCATAGTTT+AGG | - | chr3_4:67899226-67899245 | None:intergenic | 30.0% | |
| ACTTCAAAATTTGCCAGATT+TGG | + | chr3_4:67899318-67899337 | Msa0516380:CDS | 30.0% | |
| !! | TCATAAATACTGGTTTGCAA+GGG | - | chr3_4:67899522-67899541 | None:intergenic | 30.0% |
| AACTAACCTATCCCATATAT+TGG | - | chr3_4:67899884-67899903 | None:intergenic | 30.0% | |
| GGATGTAGATGCTATTAATT+AGG | + | chr3_4:67899976-67899995 | Msa0516380:intron | 30.0% | |
| ATTCTGGATGACTGTAATTA+TGG | - | chr3_4:67900574-67900593 | None:intergenic | 30.0% | |
| ACTACATAATTTACATTGGC+AGG | + | chr3_4:67900594-67900613 | Msa0516380:intron | 30.0% | |
| ACTGTACTTGCAAAAATGAT+GGG | - | chr3_4:67900801-67900820 | None:intergenic | 30.0% | |
| TACTGTACTTGCAAAAATGA+TGG | - | chr3_4:67900802-67900821 | None:intergenic | 30.0% | |
| GATAGTACTTGTAGTTATTG+TGG | - | chr3_4:67901085-67901104 | None:intergenic | 30.0% | |
| CTAGACAAAAATGTGTTAAC+TGG | + | chr3_4:67901253-67901272 | Msa0516380:intron | 30.0% | |
| ATTGGGCTATGATAAATATC+TGG | + | chr3_4:67901441-67901460 | Msa0516380:intron | 30.0% | |
| ATTTATAAGTTCGTATCCAC+AGG | + | chr3_4:67901495-67901514 | Msa0516380:intron | 30.0% | |
| TTTATAAGTTCGTATCCACA+GGG | + | chr3_4:67901496-67901515 | Msa0516380:intron | 30.0% | |
| !! | CGGTAAAAGCGTTAAAATAA+AGG | + | chr3_4:67901537-67901556 | Msa0516380:intron | 30.0% |
| TAAATTTATAAGGTTGCCCT+AGG | + | chr3_4:67901566-67901585 | Msa0516380:intron | 30.0% | |
| !! | AAATTAACCTAGCTTTACGA+CGG | + | chr3_4:67901723-67901742 | Msa0516380:intron | 30.0% |
| TAGGGTTATAACTTAGGAAA+GGG | - | chr3_4:67901787-67901806 | None:intergenic | 30.0% | |
| ATAGGGTTATAACTTAGGAA+AGG | - | chr3_4:67901788-67901807 | None:intergenic | 30.0% | |
| CTATTTCAGGATTAAAAGCT+AGG | + | chr3_4:67901921-67901940 | Msa0516380:intron | 30.0% | |
| TTATGTGATTGAAAGAAGCT+AGG | + | chr3_4:67901974-67901993 | Msa0516380:intron | 30.0% | |
| TATGTGATTGAAAGAAGCTA+GGG | + | chr3_4:67901975-67901994 | Msa0516380:intron | 30.0% | |
| AGAGTTCGTAACAAATTACA+TGG | + | chr3_4:67902081-67902100 | Msa0516380:intron | 30.0% | |
| !!! | CAGAAATCAGGTTGTTTTTT+AGG | - | chr3_4:67902873-67902892 | None:intergenic | 30.0% |
| TATGAAGTTGTTTGCTTGTA+TGG | + | chr3_4:67903152-67903171 | Msa0516380:intron | 30.0% | |
| TGTTTGATCAAGTGTTCATT+AGG | + | chr3_4:67903237-67903256 | Msa0516380:intron | 30.0% | |
| ATAGGATTAAACCACATTGA+AGG | - | chr3_4:67903263-67903282 | None:intergenic | 30.0% | |
| AAGCTAGATTCAATCTACAT+AGG | - | chr3_4:67903281-67903300 | None:intergenic | 30.0% | |
| ! | GATTGAATCTAGCTTATGTT+TGG | + | chr3_4:67903286-67903305 | Msa0516380:intron | 30.0% |
| !!! | TGGATCTAGAGAAGTATTTT+GGG | - | chr3_4:67903431-67903450 | None:intergenic | 30.0% |
| AGTAAATGGAGTTACAACTA+AGG | + | chr3_4:67903568-67903587 | Msa0516380:intron | 30.0% | |
| AGCATATGAACATATCGTAA+AGG | - | chr3_4:67903674-67903693 | None:intergenic | 30.0% | |
| ! | CTCTAAAAGGAAGTTTAGAA+AGG | - | chr3_4:67903861-67903880 | None:intergenic | 30.0% |
| AAACACAATCTTTCTTGAAG+GGG | - | chr3_4:67903941-67903960 | None:intergenic | 30.0% | |
| CTAAACACAATCTTTCTTGA+AGG | - | chr3_4:67903943-67903962 | None:intergenic | 30.0% | |
| CTTCAAGAAAGATTGTGTTT+AGG | + | chr3_4:67903941-67903960 | Msa0516380:CDS | 30.0% | |
| AGTTTACTATAGAAGTCAAG+CGG | - | chr3_4:67904053-67904072 | None:intergenic | 30.0% | |
| TATCAATGAAATGGACAGTT+GGG | - | chr3_4:67904089-67904108 | None:intergenic | 30.0% | |
| TCCATTTCATTGATACTGAA+TGG | + | chr3_4:67904094-67904113 | Msa0516380:CDS | 30.0% | |
| TCCATTCAGTATCAATGAAA+TGG | - | chr3_4:67904098-67904117 | None:intergenic | 30.0% | |
| GTGAGTAAATTGACATGGAT+TGG | - | chr3_4:67898244-67898263 | None:intergenic | 35.0% | |
| CAATGGTGAGTAAATTGACA+TGG | - | chr3_4:67898249-67898268 | None:intergenic | 35.0% | |
| CAATTTACTCACCATTGACA+TGG | + | chr3_4:67898252-67898271 | Msa0516380:CDS | 35.0% | |
| !! | TCAATACCTTTTTGGAGGAA+AGG | + | chr3_4:67898465-67898484 | Msa0516380:CDS | 35.0% |
| CAAAAACCTTTCCTCCAAAA+AGG | - | chr3_4:67898474-67898493 | None:intergenic | 35.0% | |
| !! | TTTTGGAGGAAAGGTTTTTG+TGG | + | chr3_4:67898474-67898493 | Msa0516380:CDS | 35.0% |
| ! | TTTGGAGGAAAGGTTTTTGT+GGG | + | chr3_4:67898475-67898494 | Msa0516380:CDS | 35.0% |
| AGAACAAGATCAATGGTTTG+TGG | - | chr3_4:67898532-67898551 | None:intergenic | 35.0% | |
| AGTAAGGAGAACAAGATCAA+TGG | - | chr3_4:67898539-67898558 | None:intergenic | 35.0% | |
| AAATGGATGTTCCATCAATG+TGG | - | chr3_4:67898732-67898751 | None:intergenic | 35.0% | |
| TGTATGTTTGTAATCTAGGG+GGG | + | chr3_4:67898775-67898794 | Msa0516380:intron | 35.0% | |
| ! | ATGCAGCTTTTGCAAAATCA+TGG | + | chr3_4:67898829-67898848 | Msa0516380:intron | 35.0% |
| TTCAAACAAGCACTTAGGTT+AGG | + | chr3_4:67898892-67898911 | Msa0516380:intron | 35.0% | |
| TCAAACAAGCACTTAGGTTA+GGG | + | chr3_4:67898893-67898912 | Msa0516380:intron | 35.0% | |
| TTTCTGAACTTGTATAGAGG+TGG | + | chr3_4:67899099-67899118 | Msa0516380:intron | 35.0% | |
| AATCCTATCTTGAACAGAGA+GGG | + | chr3_4:67899152-67899171 | Msa0516380:CDS | 35.0% | |
| GAATTGCGTTGTGAATAAGT+TGG | + | chr3_4:67899454-67899473 | Msa0516380:intron | 35.0% | |
| !! | GTCATAAATACTGGTTTGCA+AGG | - | chr3_4:67899523-67899542 | None:intergenic | 35.0% |
| TTTGACTGGATAAACCAGAT+GGG | - | chr3_4:67899562-67899581 | None:intergenic | 35.0% | |
| !! | TTTTGACTGGATAAACCAGA+TGG | - | chr3_4:67899563-67899582 | None:intergenic | 35.0% |
| TTAGCACAGCTCCAATATAT+GGG | + | chr3_4:67899870-67899889 | Msa0516380:CDS | 35.0% | |
| CTAGTAAAATCTCCTGCAAT+CGG | + | chr3_4:67899939-67899958 | Msa0516380:intron | 35.0% | |
| TAGATGCTATTAATTAGGGC+TGG | + | chr3_4:67899981-67900000 | Msa0516380:intron | 35.0% | |
| TATTAATTAGGGCTGGACAT+CGG | + | chr3_4:67899988-67900007 | Msa0516380:intron | 35.0% | |
| CTGTTATAACAGTCGGAATT+GGG | - | chr3_4:67900080-67900099 | None:intergenic | 35.0% | |
| ACTGTTATAACAGTCGGAAT+TGG | - | chr3_4:67900081-67900100 | None:intergenic | 35.0% | |
| AAAGCGACTGTTATAACAGT+CGG | - | chr3_4:67900087-67900106 | None:intergenic | 35.0% | |
| ! | GTTATAACAGTCGCTTTGTT+CGG | + | chr3_4:67900090-67900109 | Msa0516380:intron | 35.0% |
| TTTAAGTATTATGGGCCACA+TGG | - | chr3_4:67900150-67900169 | None:intergenic | 35.0% | |
| ACAGGGAAAAATCATGGTTA+TGG | - | chr3_4:67900241-67900260 | None:intergenic | 35.0% | |
| CTCTTTACAGGGAAAAATCA+TGG | - | chr3_4:67900247-67900266 | None:intergenic | 35.0% | |
| TGGACTTAAGTCTCTTTACA+GGG | - | chr3_4:67900258-67900277 | None:intergenic | 35.0% | |
| ATGGACTTAAGTCTCTTTAC+AGG | - | chr3_4:67900259-67900278 | None:intergenic | 35.0% | |
| ATATAAACTTAGGCCACTCT+TGG | + | chr3_4:67900309-67900328 | Msa0516380:intron | 35.0% | |
| ATAAGAAACCTTTAGACCCA+TGG | + | chr3_4:67900407-67900426 | Msa0516380:intron | 35.0% | |
| ACCATAATTGTCATTGCACT+AGG | + | chr3_4:67900500-67900519 | Msa0516380:intron | 35.0% | |
| ! | GCACAAAGGTACAATAATGT+AGG | - | chr3_4:67900939-67900958 | None:intergenic | 35.0% |
| ! | AGCTCTAGTGATAGTAATGT+AGG | - | chr3_4:67900991-67901010 | None:intergenic | 35.0% |
| TACATTACTATCACTAGAGC+TGG | + | chr3_4:67900990-67901009 | Msa0516380:intron | 35.0% | |
| GGATGCAGTTATAAATCTAG+AGG | - | chr3_4:67901016-67901035 | None:intergenic | 35.0% | |
| !! | TTATCCGTTTTAACCAACCA+CGG | - | chr3_4:67901311-67901330 | None:intergenic | 35.0% |
| TTGGTTAAAACGGATAAACC+AGG | + | chr3_4:67901314-67901333 | Msa0516380:intron | 35.0% | |
| GGACTGTTTCAATTTCTACT+CGG | + | chr3_4:67901517-67901536 | Msa0516380:intron | 35.0% | |
| AAACTAAATCCAACTGCCTA+GGG | - | chr3_4:67901585-67901604 | None:intergenic | 35.0% | |
| AAAACTAAATCCAACTGCCT+AGG | - | chr3_4:67901586-67901605 | None:intergenic | 35.0% | |
| ! | ATTTCTTTGAGAGAGAAGAG+AGG | - | chr3_4:67901707-67901726 | None:intergenic | 35.0% |
| TTAACCAGATTGAATAACCG+TGG | + | chr3_4:67901815-67901834 | Msa0516380:intron | 35.0% | |
| ACTCTCAATTTCCTATCTCT+AGG | + | chr3_4:67901871-67901890 | Msa0516380:intron | 35.0% | |
| ATCACTTCATTAATCCTACG+TGG | + | chr3_4:67902391-67902410 | Msa0516380:intron | 35.0% | |
| TGGTGAAATCAGATCAAAAC+AGG | - | chr3_4:67902598-67902617 | None:intergenic | 35.0% | |
| !!! | CTAGTGGTTTTCTTGTTTTG+TGG | - | chr3_4:67902750-67902769 | None:intergenic | 35.0% |
| !!! | TCAGGTTGTTTTTTAGGGTT+TGG | - | chr3_4:67902867-67902886 | None:intergenic | 35.0% |
| CATGCTGCAGAAGAAAATAA+GGG | - | chr3_4:67902910-67902929 | None:intergenic | 35.0% | |
| ACATGCTGCAGAAGAAAATA+AGG | - | chr3_4:67902911-67902930 | None:intergenic | 35.0% | |
| CAAAACTTACAAGTGTCCAA+AGG | - | chr3_4:67903101-67903120 | None:intergenic | 35.0% | |
| ! | TTGGACACTTGTAAGTTTTG+TGG | + | chr3_4:67903101-67903120 | Msa0516380:intron | 35.0% |
| GTATGGTGTGTTCATATCTA+TGG | + | chr3_4:67903169-67903188 | Msa0516380:intron | 35.0% | |
| !!! | GTGGATCTAGAGAAGTATTT+TGG | - | chr3_4:67903432-67903451 | None:intergenic | 35.0% |
| TTTGTAGCTGAAATAGCTAC+AGG | - | chr3_4:67903478-67903497 | None:intergenic | 35.0% | |
| TTAAATCACCCAGATACTCA+CGG | - | chr3_4:67903515-67903534 | None:intergenic | 35.0% | |
| CTCTTATAATCAGCTATGGA+AGG | + | chr3_4:67903545-67903564 | Msa0516380:intron | 35.0% | |
| AATGGAGTTACAACTAAGGA+TGG | + | chr3_4:67903572-67903591 | Msa0516380:intron | 35.0% | |
| ATGGAGTTACAACTAAGGAT+GGG | + | chr3_4:67903573-67903592 | Msa0516380:intron | 35.0% | |
| TGAGACTCAACTACTCTAAA+AGG | - | chr3_4:67903874-67903893 | None:intergenic | 35.0% | |
| !! | TCTTGAAGGGGTATTCAAAT+GGG | - | chr3_4:67903929-67903948 | None:intergenic | 35.0% |
| !! | TTCTTGAAGGGGTATTCAAA+TGG | - | chr3_4:67903930-67903949 | None:intergenic | 35.0% |
| ATCAATGAAATGGACAGTTG+GGG | - | chr3_4:67904088-67904107 | None:intergenic | 35.0% | |
| GTATCAATGAAATGGACAGT+TGG | - | chr3_4:67904090-67904109 | None:intergenic | 35.0% | |
| AAAAAGTTGAAGAGTCGTTG+AGG | + | chr3_4:67904181-67904200 | Msa0516380:CDS | 35.0% | |
| AAAAGTTGAAGAGTCGTTGA+GGG | + | chr3_4:67904182-67904201 | Msa0516380:CDS | 35.0% | |
| TCTTTGAGCTTCCATGTCAA+TGG | - | chr3_4:67898266-67898285 | None:intergenic | 40.0% | |
| TGGAAGCTCAAAGAGCAAAT+AGG | + | chr3_4:67898272-67898291 | Msa0516380:CDS | 40.0% | |
| TTCTCTTCTCCCTTGCTAAT+AGG | + | chr3_4:67898332-67898351 | Msa0516380:CDS | 40.0% | |
| ! | TGCAGGCTTCAATACCTTTT+TGG | + | chr3_4:67898457-67898476 | Msa0516380:intron | 40.0% |
| ! | AGGCTTCAATACCTTTTTGG+AGG | + | chr3_4:67898460-67898479 | Msa0516380:intron | 40.0% |
| TATCTTTGTCAGTGCTTCAC+AGG | + | chr3_4:67898640-67898659 | Msa0516380:intron | 40.0% | |
| GAATCCTATCTTGAACAGAG+AGG | + | chr3_4:67899151-67899170 | Msa0516380:CDS | 40.0% | |
| ATCCTATCTTGAACAGAGAG+GGG | + | chr3_4:67899153-67899172 | Msa0516380:CDS | 40.0% | |
| AGAATGCGTGAAACGTGAAT+AGG | - | chr3_4:67899377-67899396 | None:intergenic | 40.0% | |
| AAAGAATGTATCAGCCCATC+TGG | + | chr3_4:67899545-67899564 | Msa0516380:intron | 40.0% | |
| GTAAGGGTAACAACTTCAGA+TGG | - | chr3_4:67899689-67899708 | None:intergenic | 40.0% | |
| TCAGTTGCACCAATTGTTCA+CGG | - | chr3_4:67899712-67899731 | None:intergenic | 40.0% | |
| AAAAGAGGTTGCTCTCTAGT+TGG | + | chr3_4:67899777-67899796 | Msa0516380:CDS | 40.0% | |
| AAAGAGGTTGCTCTCTAGTT+GGG | + | chr3_4:67899778-67899797 | Msa0516380:CDS | 40.0% | |
| ! | TAAAGAGTGCACTTCTTAGC+TGG | + | chr3_4:67899801-67899820 | Msa0516380:CDS | 40.0% |
| CATATATTGGAGCTGTGCTA+AGG | - | chr3_4:67899871-67899890 | None:intergenic | 40.0% | |
| CTTAGCACAGCTCCAATATA+TGG | + | chr3_4:67899869-67899888 | Msa0516380:CDS | 40.0% | |
| ACAGCTCCAATATATGGGAT+AGG | + | chr3_4:67899875-67899894 | Msa0516380:CDS | 40.0% | |
| !! | CAATCGGATTTTGATGCAGT+TGG | + | chr3_4:67899955-67899974 | Msa0516380:intron | 40.0% |
| !!! | CTTGGATGGATTGAGGTTTT+GGG | - | chr3_4:67900036-67900055 | None:intergenic | 40.0% |
| !! | GTTCGGTTAAGACGGATTAA+CGG | + | chr3_4:67900107-67900126 | Msa0516380:intron | 40.0% |
| !! | TTCGGTTAAGACGGATTAAC+GGG | + | chr3_4:67900108-67900127 | Msa0516380:intron | 40.0% |
| TTAAATGACCTTGCCAAGAG+TGG | - | chr3_4:67900325-67900344 | None:intergenic | 40.0% | |
| GCCTAGTGCAATGACAATTA+TGG | - | chr3_4:67900504-67900523 | None:intergenic | 40.0% | |
| AATTGTCATTGCACTAGGCA+AGG | + | chr3_4:67900505-67900524 | Msa0516380:intron | 40.0% | |
| TGTACCTTTGTGCAACAGTT+TGG | + | chr3_4:67900946-67900965 | Msa0516380:intron | 40.0% | |
| GTACCTTTGTGCAACAGTTT+GGG | + | chr3_4:67900947-67900966 | Msa0516380:intron | 40.0% | |
| TAACCCAAACTGTTGCACAA+AGG | - | chr3_4:67900953-67900972 | None:intergenic | 40.0% | |
| ! | TTTAACCAACCACGGGTTAA+CGG | - | chr3_4:67901303-67901322 | None:intergenic | 40.0% |
| ! | TAACCCGTGGTTGGTTAAAA+CGG | + | chr3_4:67901304-67901323 | Msa0516380:intron | 40.0% |
| !! | TATCCGTTTTAACCAACCAC+GGG | - | chr3_4:67901310-67901329 | None:intergenic | 40.0% |
| AACGGATAAACCAGGTTACT+CGG | + | chr3_4:67901322-67901341 | Msa0516380:intron | 40.0% | |
| AACCCATGTATGGACATTGT+TGG | + | chr3_4:67901347-67901366 | Msa0516380:intron | 40.0% | |
| GTCCAACAATGTCCATACAT+GGG | - | chr3_4:67901352-67901371 | None:intergenic | 40.0% | |
| TGTCCAACAATGTCCATACA+TGG | - | chr3_4:67901353-67901372 | None:intergenic | 40.0% | |
| ATACTAGTATAGCAGCGGTT+CGG | - | chr3_4:67901423-67901442 | None:intergenic | 40.0% | |
| AACCGCTGCTATACTAGTAT+TGG | + | chr3_4:67901423-67901442 | Msa0516380:intron | 40.0% | |
| ACCGCTGCTATACTAGTATT+GGG | + | chr3_4:67901424-67901443 | Msa0516380:intron | 40.0% | |
| AGAAATTGAAACAGTCCCTG+TGG | - | chr3_4:67901514-67901533 | None:intergenic | 40.0% | |
| TGAGCAATAGAGGATTCGAA+AGG | - | chr3_4:67901670-67901689 | None:intergenic | 40.0% | |
| TTACTCACAGTGAGCAATAG+AGG | - | chr3_4:67901680-67901699 | None:intergenic | 40.0% | |
| AGTTAATCCGTCGTAAAGCT+AGG | - | chr3_4:67901733-67901752 | None:intergenic | 40.0% | |
| AACACTAGGAACCTAGAGAT+AGG | - | chr3_4:67901885-67901904 | None:intergenic | 40.0% | |
| GATCACAAAGACTCATCTCA+TGG | + | chr3_4:67902110-67902129 | Msa0516380:intron | 40.0% | |
| AACCAGAACCAACTATGAGT+TGG | + | chr3_4:67902204-67902223 | Msa0516380:intron | 40.0% | |
| ACCAGAACCAACTATGAGTT+GGG | + | chr3_4:67902205-67902224 | Msa0516380:intron | 40.0% | |
| AGACAGAAACAGAGCATAGA+CGG | - | chr3_4:67902265-67902284 | None:intergenic | 40.0% | |
| AAACAGGAATAAGAGCTCGA+CGG | - | chr3_4:67902582-67902601 | None:intergenic | 40.0% | |
| ! | GTGCATCAACACTAGTTTCT+TGG | - | chr3_4:67902673-67902692 | None:intergenic | 40.0% |
| ! | TGTTTTGTGGAGTTGTGTCT+GGG | - | chr3_4:67902737-67902756 | None:intergenic | 40.0% |
| !! | TTGTTTTGTGGAGTTGTGTC+TGG | - | chr3_4:67902738-67902757 | None:intergenic | 40.0% |
| CATGTTCGATCCAAAAACCA+TGG | + | chr3_4:67902926-67902945 | Msa0516380:intron | 40.0% | |
| ATCCAAAAACCATGGTCCTT+AGG | + | chr3_4:67902934-67902953 | Msa0516380:intron | 40.0% | |
| TCCAAAAACCATGGTCCTTA+GGG | + | chr3_4:67902935-67902954 | Msa0516380:intron | 40.0% | |
| AAACAAAACCCTAAGGACCA+TGG | - | chr3_4:67902946-67902965 | None:intergenic | 40.0% | |
| GTACGTGGTTTGACAAAAGA+TGG | + | chr3_4:67903043-67903062 | Msa0516380:intron | 40.0% | |
| TGTTCATTAGGCCTTCAATG+TGG | + | chr3_4:67903249-67903268 | Msa0516380:intron | 40.0% | |
| TTTCCAAACCGTGAGTATCT+GGG | + | chr3_4:67903504-67903523 | Msa0516380:intron | 40.0% | |
| GAGTATCTGGGTGATTTAAC+TGG | + | chr3_4:67903516-67903535 | Msa0516380:intron | 40.0% | |
| TCAGCTATGGAAGGAGTAAA+TGG | + | chr3_4:67903554-67903573 | Msa0516380:intron | 40.0% | |
| TGGAGTTACAACTAAGGATG+GGG | + | chr3_4:67903574-67903593 | Msa0516380:intron | 40.0% | |
| !! | CTAAAAGCATCACCTTGCAA+TGG | - | chr3_4:67903814-67903833 | None:intergenic | 40.0% |
| ! | GCAAGGTGATGCTTTTAGTA+AGG | + | chr3_4:67903816-67903835 | Msa0516380:CDS | 40.0% |
| !! | CTTGAAGGGGTATTCAAATG+GGG | - | chr3_4:67903928-67903947 | None:intergenic | 40.0% |
| GGTGAAGAAGAATCAGCATG+AGG | - | chr3_4:67898511-67898530 | None:intergenic | 45.0% | |
| GTGCTTCACAGGTACAAATG+TGG | + | chr3_4:67898651-67898670 | Msa0516380:intron | 45.0% | |
| TGAGCTTTGCAAAATCACGG+TGG | - | chr3_4:67898865-67898884 | None:intergenic | 45.0% | |
| CGGTGAGCTTTGCAAAATCA+CGG | - | chr3_4:67898868-67898887 | None:intergenic | 45.0% | |
| CAGAGAGCTACGACTGATAT+CGG | + | chr3_4:67899052-67899071 | Msa0516380:intron | 45.0% | |
| ATTTGCAGTACCATTCCTGC+TGG | + | chr3_4:67899656-67899675 | Msa0516380:intron | 45.0% | |
| TGGAAAATCACCAGCAGGAA+TGG | - | chr3_4:67899669-67899688 | None:intergenic | 45.0% | |
| TCAGATGGAAAATCACCAGC+AGG | - | chr3_4:67899674-67899693 | None:intergenic | 45.0% | |
| TACCCTTACCCGTGAACAAT+TGG | + | chr3_4:67899700-67899719 | Msa0516380:CDS | 45.0% | |
| CACCAATTGTTCACGGGTAA+GGG | - | chr3_4:67899705-67899724 | None:intergenic | 45.0% | |
| CAGTTGCACCAATTGTTCAC+GGG | - | chr3_4:67899711-67899730 | None:intergenic | 45.0% | |
| CAATTGGTGCAACTGAAGCT+AGG | + | chr3_4:67899716-67899735 | Msa0516380:CDS | 45.0% | |
| TGCACTTCTTAGCTGGAAGA+AGG | + | chr3_4:67899808-67899827 | Msa0516380:CDS | 45.0% | |
| CTGCATCAAAATCCGATTGC+AGG | - | chr3_4:67899954-67899973 | None:intergenic | 45.0% | |
| !!! | GCTTGGATGGATTGAGGTTT+TGG | - | chr3_4:67900037-67900056 | None:intergenic | 45.0% |
| ! | GTCGCTTTGTTCGGTTAAGA+CGG | + | chr3_4:67900099-67900118 | Msa0516380:intron | 45.0% |
| !! | GTTAAGACGGATTAACGGGA+GGG | + | chr3_4:67900112-67900131 | Msa0516380:intron | 45.0% |
| AACCTTTAGACCCATGGTCA+AGG | + | chr3_4:67900413-67900432 | Msa0516380:intron | 45.0% | |
| CTATGTAGAGCCTTGACCAT+GGG | - | chr3_4:67900426-67900445 | None:intergenic | 45.0% | |
| ACTATGTAGAGCCTTGACCA+TGG | - | chr3_4:67900427-67900446 | None:intergenic | 45.0% | |
| CAGTTGCTGATGCTACAACA+TGG | + | chr3_4:67900626-67900645 | Msa0516380:intron | 45.0% | |
| CACATTGCTGCTAGATTGCT+AGG | - | chr3_4:67901171-67901190 | None:intergenic | 45.0% | |
| ATGTGTTAACTGGCCCAATC+CGG | + | chr3_4:67901263-67901282 | Msa0516380:intron | 45.0% | |
| ! | TTAACCAACCACGGGTTAAC+GGG | - | chr3_4:67901302-67901321 | None:intergenic | 45.0% |
| ACGGATAAACCAGGTTACTC+GGG | + | chr3_4:67901323-67901342 | Msa0516380:intron | 45.0% | |
| TTACTCGGGTAACCCATGTA+TGG | + | chr3_4:67901337-67901356 | Msa0516380:intron | 45.0% | |
| TGGACATTGTTGGACACCAA+TGG | + | chr3_4:67901357-67901376 | Msa0516380:intron | 45.0% | |
| CATTGTTGGACACCAATGGA+CGG | + | chr3_4:67901361-67901380 | Msa0516380:intron | 45.0% | |
| TACTAGTATAGCAGCGGTTC+GGG | - | chr3_4:67901422-67901441 | None:intergenic | 45.0% | |
| GCCCAATACTAGTATAGCAG+CGG | - | chr3_4:67901428-67901447 | None:intergenic | 45.0% | |
| GCTTCCACGGTTATTCAATC+TGG | - | chr3_4:67901822-67901841 | None:intergenic | 45.0% | |
| ACGTTCTGACTTTGCTTCCA+CGG | - | chr3_4:67901835-67901854 | None:intergenic | 45.0% | |
| ! | ACCCAACTCATAGTTGGTTC+TGG | - | chr3_4:67902209-67902228 | None:intergenic | 45.0% |
| GATCTCACCCAACTCATAGT+TGG | - | chr3_4:67902215-67902234 | None:intergenic | 45.0% | |
| GCAGACAAACTTTCCTATCG+TGG | + | chr3_4:67902416-67902435 | Msa0516380:intron | 45.0% | |
| TGGGACAAAGGATTTGTCAC+TGG | - | chr3_4:67902474-67902493 | None:intergenic | 45.0% | |
| TGGCACGATGCTTCATTCTT+AGG | + | chr3_4:67902528-67902547 | Msa0516380:intron | 45.0% | |
| AACAGGAATAAGAGCTCGAC+GGG | - | chr3_4:67902581-67902600 | None:intergenic | 45.0% | |
| !! | AGTGTTGATGCACTGTCATC+AGG | + | chr3_4:67902680-67902699 | Msa0516380:intron | 45.0% |
| ACCTGGTGTCCAAGTTAAGA+AGG | + | chr3_4:67902705-67902724 | Msa0516380:intron | 45.0% | |
| ! | ACCCTAAGGACCATGGTTTT+TGG | - | chr3_4:67902939-67902958 | None:intergenic | 45.0% |
| CGTGGTTTGACAAAAGATGG+AGG | + | chr3_4:67903046-67903065 | Msa0516380:intron | 45.0% | |
| CAAAAGATGGAGGCAGTAAC+TGG | + | chr3_4:67903056-67903075 | Msa0516380:intron | 45.0% | |
| ! | TAACTGGAGAAGCTTTGGCT+GGG | + | chr3_4:67903072-67903091 | Msa0516380:intron | 45.0% |
| GTTTCCAAACCGTGAGTATC+TGG | + | chr3_4:67903503-67903522 | Msa0516380:intron | 45.0% | |
| ! | ATTGTGTCACTCGTGTGGTT+TGG | - | chr3_4:67904156-67904175 | None:intergenic | 45.0% |
| ! | GACATATTGTGTCACTCGTG+TGG | - | chr3_4:67904161-67904180 | None:intergenic | 45.0% |
| AGCAAGGGAGAAGAGAACAG+TGG | - | chr3_4:67898329-67898348 | None:intergenic | 50.0% | |
| ! | TGTGTCGACGTGTCAAACAC+TGG | - | chr3_4:67898589-67898608 | None:intergenic | 50.0% |
| AGCCCCTCTCTGTTCAAGAT+AGG | - | chr3_4:67899158-67899177 | None:intergenic | 50.0% | |
| GCACCAATTGTTCACGGGTA+AGG | - | chr3_4:67899706-67899725 | None:intergenic | 50.0% | |
| AATTAGGGCTGGACATCGGT+CGG | + | chr3_4:67899992-67900011 | Msa0516380:intron | 50.0% | |
| !! | GGTTAAGACGGATTAACGGG+AGG | + | chr3_4:67900111-67900130 | Msa0516380:intron | 50.0% |
| AACTTAGGCCACTCTTGGCA+AGG | + | chr3_4:67900314-67900333 | Msa0516380:intron | 50.0% | |
| AGCCTTGACCATGGGTCTAA+AGG | - | chr3_4:67900418-67900437 | None:intergenic | 50.0% | |
| AGCAGCAATGTGAGAGACCA+TGG | + | chr3_4:67901179-67901198 | Msa0516380:intron | 50.0% | |
| ATAAGGTTGCCCTAGGCAGT+TGG | + | chr3_4:67901573-67901592 | Msa0516380:intron | 50.0% | |
| ! | AGAAGCTTGGGGTGCGATTT+TGG | - | chr3_4:67902288-67902307 | None:intergenic | 50.0% |
| AAAATCGCACCCCAAGCTTC+TGG | + | chr3_4:67902287-67902306 | Msa0516380:intron | 50.0% | |
| TGAAGTGATCGTGCCACGAT+TGG | - | chr3_4:67902380-67902399 | None:intergenic | 50.0% | |
| AAGTTTGTCTGCTGCCACGT+AGG | - | chr3_4:67902408-67902427 | None:intergenic | 50.0% | |
| TTTCGTGCCACGATGAAGTC+TGG | - | chr3_4:67902448-67902467 | None:intergenic | 50.0% | |
| ! | GTTTGCTGAACGTGGGACAA+AGG | - | chr3_4:67902486-67902505 | None:intergenic | 50.0% |
| !! | ATGAAGCATCGTGCCACGAT+GGG | - | chr3_4:67902524-67902543 | None:intergenic | 50.0% |
| !! | AATGAAGCATCGTGCCACGA+TGG | - | chr3_4:67902525-67902544 | None:intergenic | 50.0% |
| ! | GCCTTCTTAACTTGGACACC+AGG | - | chr3_4:67902709-67902728 | None:intergenic | 50.0% |
| GGGCTTAGGCCTTCTTAACT+TGG | - | chr3_4:67902717-67902736 | None:intergenic | 50.0% | |
| TCTGAACTGAAACGGCGCTA+GGG | - | chr3_4:67902778-67902797 | None:intergenic | 50.0% | |
| ATCTGAACTGAAACGGCGCT+AGG | - | chr3_4:67902779-67902798 | None:intergenic | 50.0% | |
| GGCAGTAACTGGAGAAGCTT+TGG | + | chr3_4:67903067-67903086 | Msa0516380:intron | 50.0% | |
| ! | GTAACTGGAGAAGCTTTGGC+TGG | + | chr3_4:67903071-67903090 | Msa0516380:intron | 50.0% |
| TCACCCAGATACTCACGGTT+TGG | - | chr3_4:67903510-67903529 | None:intergenic | 50.0% | |
| ! | TCAAGTTGCAGCAGCTACTG+AGG | + | chr3_4:67903601-67903620 | Msa0516380:intron | 50.0% |
| ! | GGACATCGGTCGGTTTAGGT+CGG | + | chr3_4:67900002-67900021 | Msa0516380:intron | 55.0% |
| ! | GGTCGGTTTAGGTCGGTAGT+CGG | + | chr3_4:67900009-67900028 | Msa0516380:intron | 55.0% |
| ! | GTCGGTTTAGGTCGGTAGTC+GGG | + | chr3_4:67900010-67900029 | Msa0516380:intron | 55.0% |
| CCTCAATCCATCCAAGCCCA+CGG | + | chr3_4:67900040-67900059 | Msa0516380:intron | 55.0% | |
| TTCTCAACCGTGGGCTTGGA+TGG | - | chr3_4:67900050-67900069 | None:intergenic | 55.0% | |
| CATGTTCTCAACCGTGGGCT+TGG | - | chr3_4:67900054-67900073 | None:intergenic | 55.0% | |
| AGCCCACGGTTGAGAACATG+TGG | + | chr3_4:67900054-67900073 | Msa0516380:intron | 55.0% | |
| GGCCACATGTTCTCAACCGT+GGG | - | chr3_4:67900059-67900078 | None:intergenic | 55.0% | |
| GGATTAACGGGAGGGTTGCT+CGG | + | chr3_4:67900120-67900139 | Msa0516380:intron | 55.0% | |
| GGGTTGCTCGGTTAACCATG+TGG | + | chr3_4:67900132-67900151 | Msa0516380:intron | 55.0% | |
| TGCTTGCTTGCTTCGCTCCA+TGG | - | chr3_4:67901199-67901218 | None:intergenic | 55.0% | |
| !! | GGTTAACGGGCTTTCTGGGT+CGG | - | chr3_4:67901289-67901308 | None:intergenic | 55.0% |
| !! | CACGGGTTAACGGGCTTTCT+GGG | - | chr3_4:67901293-67901312 | None:intergenic | 55.0% |
| AAAGCCCGTTAACCCGTGGT+TGG | + | chr3_4:67901295-67901314 | Msa0516380:intron | 55.0% | |
| ! | CATGGGTTACCCGAGTAACC+TGG | - | chr3_4:67901335-67901354 | None:intergenic | 55.0% |
| TGGACACCAATGGACGGATG+CGG | + | chr3_4:67901367-67901386 | Msa0516380:intron | 55.0% | |
| AATGGACGGATGCGGATGGT+GGG | + | chr3_4:67901375-67901394 | Msa0516380:intron | 55.0% | |
| ! | AGTATAGCAGCGGTTCGGGT+CGG | - | chr3_4:67901418-67901437 | None:intergenic | 55.0% |
| GAGATCCACTGCGTGTTCTG+CGG | + | chr3_4:67902229-67902248 | Msa0516380:intron | 55.0% | |
| AACAGAGCATAGACGGCACC+AGG | - | chr3_4:67902258-67902277 | None:intergenic | 55.0% | |
| CAGAAGCGACCAGAAGCTTG+GGG | - | chr3_4:67902299-67902318 | None:intergenic | 55.0% | |
| CCAGAAGCGACCAGAAGCTT+GGG | - | chr3_4:67902300-67902319 | None:intergenic | 55.0% | |
| TCGTAACGTGGCACGATGGT+GGG | - | chr3_4:67902356-67902375 | None:intergenic | 55.0% | |
| ATCGTAACGTGGCACGATGG+TGG | - | chr3_4:67902357-67902376 | None:intergenic | 55.0% | |
| TGGATCGTAACGTGGCACGA+TGG | - | chr3_4:67902360-67902379 | None:intergenic | 55.0% | |
| GCCACGTTACGATCCAATCG+TGG | + | chr3_4:67902364-67902383 | Msa0516380:intron | 55.0% | |
| GCCACGATTGGATCGTAACG+TGG | - | chr3_4:67902368-67902387 | None:intergenic | 55.0% | |
| ! | AGTCTGGAACGTGCCACGAT+AGG | - | chr3_4:67902432-67902451 | None:intergenic | 55.0% |
| GCACGTTCCAGACTTCATCG+TGG | + | chr3_4:67902438-67902457 | Msa0516380:intron | 55.0% | |
| ! | GTGGCACGTTTGCTGAACGT+GGG | - | chr3_4:67902493-67902512 | None:intergenic | 55.0% |
| TGCACTGTCATCAGGCTACC+TGG | + | chr3_4:67902688-67902707 | Msa0516380:intron | 55.0% | |
| GTGGAGTTGTGTCTGGGCTT+AGG | - | chr3_4:67902731-67902750 | None:intergenic | 55.0% | |
| ! | AGCTTTGGCTGGGCAACCTT+TGG | + | chr3_4:67903082-67903101 | Msa0516380:intron | 55.0% |
| AGTTGCAGCAGCTACTGAGG+AGG | + | chr3_4:67903604-67903623 | Msa0516380:intron | 55.0% | |
| GCAGCTACTGAGGAGGTAAC+TGG | + | chr3_4:67903611-67903630 | Msa0516380:intron | 55.0% | |
| ACTGAGGAGGTAACTGGAGC+TGG | + | chr3_4:67903617-67903636 | Msa0516380:intron | 55.0% | |
| ! | GGCTGGACATCGGTCGGTTT+AGG | + | chr3_4:67899998-67900017 | Msa0516380:intron | 60.0% |
| !! | CCGTGGGCTTGGATGGATTG+AGG | - | chr3_4:67900043-67900062 | None:intergenic | 60.0% |
| GGGCCACATGTTCTCAACCG+TGG | - | chr3_4:67900060-67900079 | None:intergenic | 60.0% | |
| CTTTCTGGGTCGGCCGGATT+GGG | - | chr3_4:67901279-67901298 | None:intergenic | 60.0% | |
| !! | CCACGGGTTAACGGGCTTTC+TGG | - | chr3_4:67901294-67901313 | None:intergenic | 60.0% |
| CCAGAAAGCCCGTTAACCCG+TGG | + | chr3_4:67901291-67901310 | Msa0516380:intron | 60.0% | |
| CACCAATGGACGGATGCGGA+TGG | + | chr3_4:67901371-67901390 | Msa0516380:intron | 60.0% | |
| CACCATCCGCATCCGTCCAT+TGG | - | chr3_4:67901376-67901395 | None:intergenic | 60.0% | |
| CAATGGACGGATGCGGATGG+TGG | + | chr3_4:67901374-67901393 | Msa0516380:intron | 60.0% | |
| !! | CGGATGCGGATGGTGGGAAA+TGG | + | chr3_4:67901381-67901400 | Msa0516380:intron | 60.0% |
| GGAAACCGCAGAACACGCAG+TGG | - | chr3_4:67902237-67902256 | None:intergenic | 60.0% | |
| CTGCGTGTTCTGCGGTTTCC+TGG | + | chr3_4:67902237-67902256 | Msa0516380:intron | 60.0% | |
| CCCAAGCTTCTGGTCGCTTC+TGG | + | chr3_4:67902297-67902316 | Msa0516380:intron | 60.0% | |
| GCCAGAAGCGACCAGAAGCT+TGG | - | chr3_4:67902301-67902320 | None:intergenic | 60.0% | |
| ! | CGTGGCACGTTTGCTGAACG+TGG | - | chr3_4:67902494-67902513 | None:intergenic | 60.0% |
| CGGCGCTAGGGTTTCACTAG+TGG | - | chr3_4:67902766-67902785 | None:intergenic | 60.0% | |
| GCAGCTGCTGCACCATTGCA+AGG | + | chr3_4:67903799-67903818 | Msa0516380:CDS | 60.0% | |
| GCTTTCTGGGTCGGCCGGAT+TGG | - | chr3_4:67901280-67901299 | None:intergenic | 65.0% | |
| ! | AACGGGCTTTCTGGGTCGGC+CGG | - | chr3_4:67901285-67901304 | None:intergenic | 65.0% |
| !! | CGGTTCGGGTCGGTTTTCGC+TGG | - | chr3_4:67901408-67901427 | None:intergenic | 65.0% |
| GCCACGAGATGCTCCCATCG+TGG | + | chr3_4:67902508-67902527 | Msa0516380:intron | 65.0% | |
| !! | GCCACGATGGGAGCATCTCG+TGG | - | chr3_4:67902512-67902531 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 67898235 | 67904209 | 67898235 | ID=Msa0516380;Name=Msa0516380 |
| chr3_4 | mRNA | 67898235 | 67904209 | 67898235 | ID=Msa0516380-mRNA-1;Parent=Msa0516380;Name=Msa0516380-mRNA-1;_AED=0.42;_eAED=0.50;_QI=13|0.2|0.5|0.83|0|0.5|6|0|349 |
| chr3_4 | exon | 67898235 | 67898353 | 67898235 | ID=Msa0516380-mRNA-1:exon:17825;Parent=Msa0516380-mRNA-1 |
| chr3_4 | exon | 67898462 | 67898563 | 67898462 | ID=Msa0516380-mRNA-1:exon:17826;Parent=Msa0516380-mRNA-1 |
| chr3_4 | exon | 67899116 | 67899252 | 67899116 | ID=Msa0516380-mRNA-1:exon:17827;Parent=Msa0516380-mRNA-1 |
| chr3_4 | exon | 67899318 | 67899358 | 67899318 | ID=Msa0516380-mRNA-1:exon:17828;Parent=Msa0516380-mRNA-1 |
| chr3_4 | exon | 67899664 | 67899896 | 67899664 | ID=Msa0516380-mRNA-1:exon:17829;Parent=Msa0516380-mRNA-1 |
| chr3_4 | exon | 67903779 | 67904209 | 67903779 | ID=Msa0516380-mRNA-1:exon:17830;Parent=Msa0516380-mRNA-1 |
| chr3_4 | five_prime_UTR | 67898235 | 67898247 | 67898235 | ID=Msa0516380-mRNA-1:five_prime_utr;Parent=Msa0516380-mRNA-1 |
| chr3_4 | CDS | 67898248 | 67898353 | 67898248 | ID=Msa0516380-mRNA-1:cds;Parent=Msa0516380-mRNA-1 |
| chr3_4 | CDS | 67898462 | 67898563 | 67898462 | ID=Msa0516380-mRNA-1:cds;Parent=Msa0516380-mRNA-1 |
| chr3_4 | CDS | 67899116 | 67899252 | 67899116 | ID=Msa0516380-mRNA-1:cds;Parent=Msa0516380-mRNA-1 |
| chr3_4 | CDS | 67899318 | 67899358 | 67899318 | ID=Msa0516380-mRNA-1:cds;Parent=Msa0516380-mRNA-1 |
| chr3_4 | CDS | 67899664 | 67899896 | 67899664 | ID=Msa0516380-mRNA-1:cds;Parent=Msa0516380-mRNA-1 |
| chr3_4 | CDS | 67903779 | 67904209 | 67903779 | ID=Msa0516380-mRNA-1:cds;Parent=Msa0516380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
