AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382000 MtrunA17_Chr3g0136211 98.184 771 11 2 1 768 1 771 0.0 1552
Msa0382000 MtrunA17_Chr3g0136161 86.305 774 98 4 1 768 1 772 0.0 1301
Msa0382000 MtrunA17_Chr3g0136141 80.449 757 125 5 15 768 1 737 0.0 1203
Msa0382000 MtrunA17_Chr2g0300341 50.066 757 314 15 19 757 15 725 0.0 688
Msa0382000 MtrunA17_Chr8g0369461 46.528 576 285 10 195 760 129 691 1.07e-164 492
Msa0382000 MtrunA17_Chr1g0211561 40.117 683 341 11 137 767 251 917 3.19e-158 483
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382000 AT5G12080.1 58.345 713 278 9 49 757 33 730 0.0 827
Msa0382000 AT5G12080.2 58.345 713 278 9 49 757 33 730 0.0 827
Msa0382000 AT5G12080.3 58.345 713 278 9 49 757 33 730 0.0 827
Msa0382000 AT5G19520.1 52.983 704 312 6 58 757 50 738 0.0 744
Msa0382000 AT5G19520.2 52.983 704 312 6 58 757 50 738 0.0 744
Msa0382000 AT2G17010.1 41.556 604 317 5 188 760 292 890 4.63e-158 482
Msa0382000 AT1G53470.1 39.625 694 357 12 115 760 181 860 1.35e-155 475
Msa0382000 AT3G14810.1 42.197 692 344 15 115 765 188 864 5.92e-155 473
Msa0382000 AT1G78610.1 42.296 636 325 8 166 767 211 838 9.32e-154 469
Msa0382000 AT2G17000.2 41.408 611 317 9 182 760 222 823 3.63e-144 444
Msa0382000 AT2G17000.1 41.408 611 317 9 182 760 222 823 5.91e-144 444
Msa0382000 AT3G14810.2 39.623 689 325 16 115 762 188 826 1.05e-134 420
Msa0382000 AT2G17010.2 35.833 360 195 5 188 516 292 646 2.41e-64 227

Find 183 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAATGAACTTTCAAGAATT+TGG 0.059991 3_1:-84441937 Msa0382000:CDS
GACATTGTTGCTAAAGATTT+TGG 0.123829 3_1:-84443738 Msa0382000:CDS
TTTCTTTGTGCTACCTTTAC+TGG 0.130051 3_1:+84443559 None:intergenic
TAAATTGGCCACGAAGATTT+TGG 0.178672 3_1:-84443819 Msa0382000:CDS
TCTACACTGTCACCCATATT+AGG 0.187404 3_1:+84442266 None:intergenic
TCATTTGTAGCAGGAGCTTT+TGG 0.190150 3_1:+84444496 None:intergenic
TTGTACTCCTGAAACTAAAA+TGG 0.194746 3_1:+84443582 None:intergenic
CAATGAACTTTCAAGAATTT+GGG 0.230393 3_1:-84441936 Msa0382000:CDS
TTGCTCACCAAATCTTGATT+TGG 0.240620 3_1:+84444426 None:intergenic
AGATTTGGAGTTTGGGGCTT+TGG 0.250678 3_1:-84444057 Msa0382000:CDS
AAGTAACATTCTCTTCTAAA+AGG 0.256225 3_1:+84444383 None:intergenic
TTCATGGACTATGAAGATTT+TGG 0.258155 3_1:-84443486 Msa0382000:CDS
ACTCCGTAGGTTCTTGATTA+AGG 0.262247 3_1:-84442950 Msa0382000:CDS
CTAGGGATGAACCTTATTTC+AGG 0.265146 3_1:+84444532 None:intergenic
TCAGGGGAAGCACAGTTTAA+AGG 0.276027 3_1:+84444550 None:intergenic
AAGGACGGAGATTTGGAGTT+TGG 0.278610 3_1:-84444065 Msa0382000:CDS
TTATTACAGAAGCCCTAATA+TGG 0.287671 3_1:-84442279 Msa0382000:CDS
TATGTTCTGCAGACTCTCTC+TGG 0.301029 3_1:-84443656 Msa0382000:CDS
GTACTTGCGGCTTTCATGTT+TGG 0.306392 3_1:-84442573 Msa0382000:CDS
ACTGTTCCAGGTTTATTATT+CGG 0.316517 3_1:+84444307 None:intergenic
TTCTCAGCCTCTTCCATTAG+TGG 0.319988 3_1:+84443629 None:intergenic
TGCTCACCAAATCTTGATTT+GGG 0.321424 3_1:+84444427 None:intergenic
TGGAGTCGAACGATCTAAAT+TGG 0.321444 3_1:-84443834 Msa0382000:CDS
TAACAGTTGAGGAACTAAAA+AGG 0.321821 3_1:-84444084 Msa0382000:CDS
GATGAACACCTTGCGGAATA+AGG 0.326639 3_1:+84441839 None:intergenic
TCTAAAAGGATTCCATCAAT+AGG 0.336245 3_1:+84444397 None:intergenic
GGTGAACGTGGTGCTTTATA+TGG 0.336535 3_1:+84444328 None:intergenic
ACTGTGCTTCCCCTGAAATA+AGG 0.336839 3_1:-84444543 Msa0382000:CDS
CTACTGGCACAGGCAGAAAC+AGG 0.337087 3_1:-84442904 Msa0382000:CDS
TCTCTCTGGGCCTCCACTAA+TGG 0.337430 3_1:-84443642 Msa0382000:CDS
CACTCCTAGAACACCTTTGA+TGG 0.340051 3_1:-84444254 Msa0382000:CDS
CAGAAAATCTTTAGCAGCTT+GGG 0.350080 3_1:-84442872 Msa0382000:CDS
AGGACGGAGATTTGGAGTTT+GGG 0.350085 3_1:-84444064 Msa0382000:CDS
ACAGTTCTATAAACTGTTCC+AGG 0.358716 3_1:+84444295 None:intergenic
TTTATGGCCAGGACAGAGTT+TGG 0.360145 3_1:+84442314 None:intergenic
TTTGGAGTTTGGGGCTTTGG+AGG 0.367529 3_1:-84444054 Msa0382000:CDS
TCTAAGCCCAAATCAAGATT+TGG 0.368072 3_1:-84444433 Msa0382000:CDS
AGCAAGAGAAAGTTTCTTCA+TGG 0.373517 3_1:-84443502 Msa0382000:CDS
TCCTTTGGTATTTCCCCTAC+TGG 0.375771 3_1:-84442920 Msa0382000:CDS
GTGAAAGTAAAGGCCTTAAC+AGG 0.375879 3_1:-84441647 Msa0382000:three_prime_UTR
AAAGAAAGAGGTTATTGATA+TGG 0.383412 3_1:-84443543 Msa0382000:CDS
AACATTCCTGAAAACGTAAT+AGG 0.384096 3_1:+84443340 None:intergenic
AGTAGTGTGGCTTCTTCTAA+TGG 0.385108 3_1:-84442640 Msa0382000:CDS
GATGCCATCAAAGGTGTTCT+AGG 0.387245 3_1:+84444250 None:intergenic
TCAACTCATGATCATGATCT+TGG 0.387525 3_1:+84444614 None:intergenic
GGAGTTTGGGGCTTTGGAGG+TGG 0.388035 3_1:-84444051 Msa0382000:CDS
CTACACTGTCACCCATATTA+GGG 0.388576 3_1:+84442267 None:intergenic
CACTTAAGATAACTTGAATC+AGG 0.390741 3_1:+84441802 None:intergenic
TTCTTGTATATGATTTCATC+AGG 0.393170 3_1:+84444205 None:intergenic
ACTCTTGTTTCCCTTCTCAT+TGG 0.393699 3_1:-84443782 Msa0382000:CDS
CAATTAAACAAGCTAGTTAC+AGG 0.398707 3_1:-84442684 Msa0382000:CDS
CCAGAAAATCTTTAGCAGCT+TGG 0.399961 3_1:-84442873 Msa0382000:CDS
ATTCATGAATCATGATTGTT+GGG 0.401352 3_1:-84441684 Msa0382000:three_prime_UTR
CACTAATTCACTTCTCCGCT+TGG 0.404975 3_1:+84441906 None:intergenic
GTTGCTAACATTGCCTGTTA+AGG 0.406838 3_1:+84441634 None:intergenic
AATTCATGAATCATGATTGT+TGG 0.409830 3_1:-84441685 Msa0382000:three_prime_UTR
CTGGCATCCTAGTTTCAGTT+TGG 0.410393 3_1:-84442016 Msa0382000:CDS
GATTAAGGAAGAAGTTCCTT+TGG 0.415393 3_1:-84442935 Msa0382000:CDS
CTACTATGGTCACCACTACT+AGG 0.415578 3_1:+84442658 None:intergenic
TCCGGCATAGATATAATAAC+TGG 0.425119 3_1:-84441486 Msa0382000:three_prime_UTR
CTGTTTCTGCCTGTGCCAGT+AGG 0.426864 3_1:+84442905 None:intergenic
CATCGATCGCCAACATCAAA+TGG 0.429406 3_1:+84442498 None:intergenic
GACAATGTGCGTGAACCATT+TGG 0.437003 3_1:+84443988 None:intergenic
TGGAGAGGAATCCACAATAC+TGG 0.438670 3_1:-84442035 Msa0382000:CDS
AGCAGTTGCTTCCATCTCAT+TGG 0.438791 3_1:+84443367 None:intergenic
GAGTCTGCAGAACATATTGA+TGG 0.441671 3_1:+84443663 None:intergenic
TGTTTCTGCCTGTGCCAGTA+GGG 0.443402 3_1:+84442906 None:intergenic
TATATTCTTACTTGCAGCTA+GGG 0.445433 3_1:+84443309 None:intergenic
GAGCAACCTTACCCTATTGA+TGG 0.452191 3_1:-84444409 Msa0382000:CDS
CTTGAAACTTAATAATGAAA+AGG 0.452787 3_1:-84442345 Msa0382000:CDS
CTAAAAGGATTCCATCAATA+GGG 0.453814 3_1:+84444398 None:intergenic
ACGACGTCAGCAGAGAAAAT+CGG 0.461578 3_1:-84442227 Msa0382000:CDS
TAGAAGAAGCCACACTACTA+TGG 0.462238 3_1:+84442644 None:intergenic
TATATCTTTGTGATATGCAT+AGG 0.462242 3_1:-84444754 Msa0382000:five_prime_UTR
GTGCATCACGGGTAGCTTGT+TGG 0.471724 3_1:-84444113 Msa0382000:CDS
ATCTAGAGAATTAGAGATTG+TGG 0.475217 3_1:+84443436 None:intergenic
TCGCTTTGGTTCTACTCACA+TGG 0.480459 3_1:-84443874 Msa0382000:CDS
GGTATTTCCCCTACTGGCAC+AGG 0.484922 3_1:-84442914 Msa0382000:CDS
ATGAAAGAAAAGAGATCAAG+TGG 0.485907 3_1:+84444909 None:intergenic
TGTACTCCTGAAACTAAAAT+GGG 0.489996 3_1:+84443583 None:intergenic
GGATCCTCACCAGCTGGACC+TGG 0.490344 3_1:+84444226 None:intergenic
GATTATTAAATTATGTATCC+AGG 0.492367 3_1:-84441599 Msa0382000:three_prime_UTR
GTGGCATGTTAGTTACCAAA+TGG 0.493145 3_1:-84444003 Msa0382000:CDS
AAGAAAGTTGAATTTAGTAA+AGG 0.494912 3_1:-84444187 Msa0382000:CDS
AAATGTAAATAAGATTAAGA+TGG 0.497083 3_1:-84441977 Msa0382000:CDS
ATCTCCAGGTCCAGCTGGTG+AGG 0.497675 3_1:-84444230 Msa0382000:CDS
CGGAGACAATGGAAGACTCC+AGG 0.502739 3_1:+84441505 None:intergenic
AATGTAAATAAGATTAAGAT+GGG 0.505449 3_1:-84441976 Msa0382000:CDS
TATATCTATGCCGGAGACAA+TGG 0.510742 3_1:+84441494 None:intergenic
TAGTTTCAGTTTGGCAGTGA+AGG 0.512844 3_1:-84442007 Msa0382000:CDS
TTTGTGTTTGTGTGCATCAC+GGG 0.513377 3_1:-84444124 Msa0382000:CDS
CGCTTTGGTTCTACTCACAT+GGG 0.514104 3_1:-84443873 Msa0382000:CDS
TGGACTGAAGAAATGTATCC+AGG 0.514151 3_1:-84443909 Msa0382000:CDS
ATGGCATCTCCAGGTCCAGC+TGG 0.514371 3_1:-84444235 Msa0382000:CDS
GCCGAAAATAAAAGATCGTA+AGG 0.515257 3_1:-84441418 Msa0382000:three_prime_UTR
ATATCTTTGTGATATGCATA+GGG 0.515808 3_1:-84444753 Msa0382000:five_prime_UTR
TGACAGACAAAAGAAACAAA+AGG 0.516887 3_1:+84441740 None:intergenic
TTCAGGAGTACAACCAGTAA+AGG 0.520751 3_1:-84443572 Msa0382000:CDS
ATATATTCTTACTTGCAGCT+AGG 0.525421 3_1:+84443308 None:intergenic
ATGTTCTGCAGACTCTCTCT+GGG 0.525655 3_1:-84443655 Msa0382000:CDS
TAGGGATGAACCTTATTTCA+GGG 0.528282 3_1:+84444533 None:intergenic
CATCGGATCCACTTCAACGT+TGG 0.530585 3_1:+84441558 None:intergenic
TACGAAAGACTTGAGAGTCC+TGG 0.532115 3_1:+84441581 None:intergenic
CTTTCGTACCAACGTTGAAG+TGG 0.532133 3_1:-84441566 Msa0382000:three_prime_UTR
TCATCAGGATCCTCACCAGC+TGG 0.532211 3_1:+84444220 None:intergenic
CGTTCACCGAATAATAAACC+TGG 0.533198 3_1:-84444313 Msa0382000:CDS
GTTGGCTAGTTTAACAGTTG+AGG 0.533975 3_1:-84444095 Msa0382000:CDS
ACCAGTTATTATATCTATGC+CGG 0.534817 3_1:+84441485 None:intergenic
CATTACAAACACGAAGATGA+TGG 0.535612 3_1:+84442524 None:intergenic
GAAGTTTCATCTTAATGAGA+AGG 0.536053 3_1:+84441774 None:intergenic
ACACCTTTGATGGCATCTCC+AGG 0.537728 3_1:-84444244 Msa0382000:CDS
GGATACATTTCTTCAGTCCA+TGG 0.539549 3_1:+84443912 None:intergenic
GGACGGAGATTTGGAGTTTG+GGG 0.539859 3_1:-84444063 Msa0382000:CDS
TACACCATCCAAAATCTTCG+TGG 0.540293 3_1:+84443811 None:intergenic
TATTACAGAAGCCCTAATAT+GGG 0.542039 3_1:-84442278 Msa0382000:CDS
AGGATTCCATCAATAGGGTA+AGG 0.542280 3_1:+84444403 None:intergenic
GTATTATCCAAACTCTGTCC+TGG 0.542978 3_1:-84442321 Msa0382000:CDS
TAAAGGTAGCACAAAGAAAG+AGG 0.543539 3_1:-84443555 Msa0382000:CDS
TGAATCATGATTGTTGGGAG+TGG 0.544237 3_1:-84441679 Msa0382000:three_prime_UTR
GAGGTGGTGTATGCTTGTGA+TGG 0.544535 3_1:-84444035 Msa0382000:CDS
GGTAATAATAATAAGCATCA+AGG 0.546427 3_1:-84444718 Msa0382000:CDS
AAGCGATCCAAGTGAAAACC+TGG 0.546867 3_1:+84443891 None:intergenic
CATGATCTTGGCCATGGTGA+TGG 0.547727 3_1:+84444626 None:intergenic
ACTCGGTTGAACTTCACCCC+TGG 0.550304 3_1:-84441523 Msa0382000:three_prime_UTR
TAAAGAAATTACCAATGAGA+TGG 0.550653 3_1:-84443378 Msa0382000:CDS
CTTCTGTAATAATTGCTGAT+CGG 0.555225 3_1:+84442290 None:intergenic
TCAGCCTCTTCCATTAGTGG+AGG 0.556564 3_1:+84443632 None:intergenic
GTAATGCATCCATTTGATGT+TGG 0.558028 3_1:-84442507 Msa0382000:CDS
ATAAATAAATAAAATACAAG+AGG 0.560960 3_1:+84444869 None:intergenic
AAACTAGGATGCCAGTATTG+TGG 0.562729 3_1:+84442024 None:intergenic
CTGGAGTCTTCCATTGTCTC+CGG 0.563338 3_1:-84441504 Msa0382000:three_prime_UTR
TGGGCCTCCACTAATGGAAG+AGG 0.563345 3_1:-84443636 Msa0382000:CDS
CTTCCTTAATCAAGAACCTA+CGG 0.566575 3_1:+84442947 None:intergenic
GTTTCTGCCTGTGCCAGTAG+GGG 0.569425 3_1:+84442907 None:intergenic
GTTTGTGTTTGTGTGCATCA+CGG 0.570532 3_1:-84444125 Msa0382000:CDS
GCGTAAGAGACTAACGACTA+AGG 0.572543 3_1:-84444161 Msa0382000:CDS
GTTCTATATAGTGAAAGTAA+AGG 0.574441 3_1:-84441657 Msa0382000:three_prime_UTR
AAAATCTTTAGCAGCTTGGG+TGG 0.582100 3_1:-84442869 Msa0382000:intron
AACCAAACAAAATGAACCGA+TGG 0.590882 3_1:+84441713 None:intergenic
TGCATAGGGTTGTGAATGGA+TGG 0.590999 3_1:-84444739 Msa0382000:exon
GAAGAAAACAGAAGTGGTGG+TGG 0.592280 3_1:-84444674 Msa0382000:CDS
CGATGTAAAATTCCGTCACT+CGG 0.593422 3_1:-84441540 Msa0382000:three_prime_UTR
AATAAATTAGGTATTTGGAG+AGG 0.593844 3_1:-84442050 Msa0382000:intron
CTCATCGCAGCTAGTACTTG+CGG 0.594578 3_1:-84442586 Msa0382000:CDS
GCGGAGAAGTGAATTAGTGA+TGG 0.596207 3_1:-84441902 Msa0382000:CDS
GATATGCATAGGGTTGTGAA+TGG 0.598817 3_1:-84444743 Msa0382000:exon
CAAGTACTAGCTGCGATGAG+AGG 0.600062 3_1:+84442589 None:intergenic
GGAGACAATGGAAGACTCCA+GGG 0.600835 3_1:+84441506 None:intergenic
TTCACTGCCAAACTGAAACT+AGG 0.601450 3_1:+84442009 None:intergenic
GTGGTGGCAATTTCAAATGT+GGG 0.602248 3_1:-84444658 Msa0382000:CDS
GGACCTGGAGATGCCATCAA+AGG 0.602592 3_1:+84444241 None:intergenic
GATCAAAGAAAGATTTGACA+TGG 0.605754 3_1:+84443705 None:intergenic
GGTTTATTATTCGGTGAACG+TGG 0.607267 3_1:+84444316 None:intergenic
ATATTCTTACTTGCAGCTAG+GGG 0.610117 3_1:+84443310 None:intergenic
ATGGAAGAGGCTGAGAAAGT+CGG 0.617688 3_1:-84443623 Msa0382000:CDS
CATGATCATGATCTTGGCCA+TGG 0.624053 3_1:+84444620 None:intergenic
GGTGGTGGCAATTTCAAATG+TGG 0.624592 3_1:-84444659 Msa0382000:CDS
GTGGCAATTTCAAATGTGGG+TGG 0.626198 3_1:-84444655 Msa0382000:CDS
AATGAACTTTCAAGAATTTG+GGG 0.631242 3_1:-84441935 Msa0382000:CDS
AGGGATGAACCTTATTTCAG+GGG 0.633053 3_1:+84444534 None:intergenic
AGGTGGTGAAGTGAGCATGA+TGG 0.635799 3_1:-84444698 Msa0382000:CDS
GGGGAAGCACAGTTTAAAGG+TGG 0.637546 3_1:+84444553 None:intergenic
TACTGGCACAGGCAGAAACA+GGG 0.640432 3_1:-84442903 Msa0382000:CDS
GGTGAAGTTCAACCGAGTGA+CGG 0.641071 3_1:+84441528 None:intergenic
GCCAGTAGGGGAAATACCAA+AGG 0.642812 3_1:+84442919 None:intergenic
AGATACTACCTTATTCCGCA+AGG 0.644323 3_1:-84441847 Msa0382000:CDS
AGGTGTTCATCTCAGACACA+TGG 0.650077 3_1:-84441827 Msa0382000:CDS
AAAGAAAAGAGATCAAGTGG+AGG 0.670232 3_1:+84444912 None:intergenic
AGTTACAGGAGTCCTAGTAG+TGG 0.671864 3_1:-84442670 Msa0382000:CDS
AATAATAATAAGCATCAAGG+TGG 0.672497 3_1:-84444715 Msa0382000:CDS
TCGACGAGGATGAACTCCGT+AGG 0.674026 3_1:-84442963 Msa0382000:CDS
GATGGAGAAGAAAACAGAAG+TGG 0.675509 3_1:-84444680 Msa0382000:CDS
CTTAAGCGACACTAAAACAG+CGG 0.676974 3_1:-84442712 Msa0382000:CDS
TAGTGGTGACCATAGTAGTG+TGG 0.677764 3_1:-84442653 Msa0382000:CDS
GGAGAAGAAAACAGAAGTGG+TGG 0.683682 3_1:-84444677 Msa0382000:CDS
GAAGAGGCTGAGAAAGTCGG+CGG 0.686077 3_1:-84443620 Msa0382000:CDS
AATTTGGGGAGAAGACCAAG+CGG 0.720680 3_1:-84441921 Msa0382000:CDS
GAGACAATGGAAGACTCCAG+GGG 0.727840 3_1:+84441507 None:intergenic
TGTCTGAGATGAACACCTTG+CGG 0.733097 3_1:+84441832 None:intergenic
TATGAATAGGGACATCGACG+AGG 0.735291 3_1:-84442977 Msa0382000:intron
TAGATGCAGTGATGAACTCG+AGG 0.741103 3_1:-84443463 Msa0382000:CDS
GGTGGAGATAGCCATCACCA+TGG 0.745710 3_1:-84444637 Msa0382000:CDS
GGTGACTTTGTAGAGTAACG+AGG 0.754563 3_1:+84444574 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAATAAAATACAAG+AGG + chr3_1:84441467-84441486 None:intergenic 10.0%
!!! TAACATTTCAAATATTTTTT+GGG - chr3_1:84444234-84444253 Msa0382000:CDS 10.0%
!!! ATGTATTCTTTTAATAAATT+AGG - chr3_1:84444271-84444290 Msa0382000:CDS 10.0%
!! AAGATATAAACTAAATAACT+TGG + chr3_1:84441567-84441586 None:intergenic 15.0%
!!! CTAACATTTCAAATATTTTT+TGG - chr3_1:84444233-84444252 Msa0382000:CDS 15.0%
!!! CTTTTAATAAATTAGGTATT+TGG - chr3_1:84444278-84444297 Msa0382000:CDS 15.0%
!! AAATGTAAATAAGATTAAGA+TGG - chr3_1:84444356-84444375 Msa0382000:CDS 15.0%
!! AATGTAAATAAGATTAAGAT+GGG - chr3_1:84444357-84444376 Msa0382000:CDS 15.0%
!!! ATTTCTAGTAATAATTCTGA+TGG - chr3_1:84441541-84441560 Msa0382000:three_prime_UTR 20.0%
!! AAGAAAGTTGAATTTAGTAA+AGG - chr3_1:84442146-84442165 Msa0382000:intron 20.0%
!! TAAACAACTTAATTAAGTGT+TGG + chr3_1:84443259-84443278 None:intergenic 20.0%
!!! ATAATTTTGAAGGCATTAAT+AGG + chr3_1:84443923-84443942 None:intergenic 20.0%
!! CTTGAAACTTAATAATGAAA+AGG - chr3_1:84443988-84444007 Msa0382000:CDS 20.0%
!! GATTATTAAATTATGTATCC+AGG - chr3_1:84444734-84444753 Msa0382000:exon 20.0%
! TATATCTTTGTGATATGCAT+AGG - chr3_1:84441579-84441598 Msa0382000:three_prime_UTR 25.0%
! ATATCTTTGTGATATGCATA+GGG - chr3_1:84441580-84441599 Msa0382000:three_prime_UTR 25.0%
! GGTAATAATAATAAGCATCA+AGG - chr3_1:84441615-84441634 Msa0382000:three_prime_UTR 25.0%
! AATAATAATAAGCATCAAGG+TGG - chr3_1:84441618-84441637 Msa0382000:three_prime_UTR 25.0%
!! ATCTTACAAGAGTTTTTCTT+GGG + chr3_1:84441872-84441891 None:intergenic 25.0%
! AAGTAACATTCTCTTCTAAA+AGG + chr3_1:84441953-84441972 None:intergenic 25.0%
! TTCTTGTATATGATTTCATC+AGG + chr3_1:84442131-84442150 None:intergenic 25.0%
!! GAACTTTTTGTTGAAGAAAA+AGG - chr3_1:84442385-84442404 Msa0382000:CDS 25.0%
! AAAGAAAGAGGTTATTGATA+TGG - chr3_1:84442790-84442809 Msa0382000:intron 25.0%
! TAAAGAAATTACCAATGAGA+TGG - chr3_1:84442955-84442974 Msa0382000:CDS 25.0%
! TTATACACTTCTCTTTGTTA+AGG - chr3_1:84443223-84443242 Msa0382000:intron 25.0%
! TATACACTTCTCTTTGTTAA+GGG - chr3_1:84443224-84443243 Msa0382000:intron 25.0%
! AGAGAAGAGTAAATACAATT+AGG + chr3_1:84443293-84443312 None:intergenic 25.0%
! CACTGAATGAAAAAATAAAG+AGG - chr3_1:84444131-84444150 Msa0382000:CDS 25.0%
! AGCTAATTGTATAAGTAATC+TGG - chr3_1:84444156-84444175 Msa0382000:CDS 25.0%
! AATAAATTAGGTATTTGGAG+AGG - chr3_1:84444283-84444302 Msa0382000:CDS 25.0%
! ACAATGAACTTTCAAGAATT+TGG - chr3_1:84444396-84444415 Msa0382000:CDS 25.0%
! CAATGAACTTTCAAGAATTT+GGG - chr3_1:84444397-84444416 Msa0382000:CDS 25.0%
! AATGAACTTTCAAGAATTTG+GGG - chr3_1:84444398-84444417 Msa0382000:CDS 25.0%
! AATTCATGAATCATGATTGT+TGG - chr3_1:84444648-84444667 Msa0382000:CDS 25.0%
! ATTCATGAATCATGATTGTT+GGG - chr3_1:84444649-84444668 Msa0382000:CDS 25.0%
! GTTCTATATAGTGAAAGTAA+AGG - chr3_1:84444676-84444695 Msa0382000:CDS 25.0%
ATGAAAGAAAAGAGATCAAG+TGG + chr3_1:84441427-84441446 None:intergenic 30.0%
! TCTTACAAGAGTTTTTCTTG+GGG + chr3_1:84441871-84441890 None:intergenic 30.0%
! GATCTTACAAGAGTTTTTCT+TGG + chr3_1:84441873-84441892 None:intergenic 30.0%
CTAAAAGGATTCCATCAATA+GGG + chr3_1:84441938-84441957 None:intergenic 30.0%
TCTAAAAGGATTCCATCAAT+AGG + chr3_1:84441939-84441958 None:intergenic 30.0%
ACTGTTCCAGGTTTATTATT+CGG + chr3_1:84442029-84442048 None:intergenic 30.0%
TAACAGTTGAGGAACTAAAA+AGG - chr3_1:84442249-84442268 Msa0382000:CDS 30.0%
CAAAAATGTTCCAATGAGAA+GGG + chr3_1:84442564-84442583 None:intergenic 30.0%
ACAAAAATGTTCCAATGAGA+AGG + chr3_1:84442565-84442584 None:intergenic 30.0%
! TTCTCATTGGAACATTTTTG+TGG - chr3_1:84442564-84442583 Msa0382000:CDS 30.0%
! TCTCATTGGAACATTTTTGT+GGG - chr3_1:84442565-84442584 Msa0382000:CDS 30.0%
! GACATTGTTGCTAAAGATTT+TGG - chr3_1:84442595-84442614 Msa0382000:CDS 30.0%
GATCAAAGAAAGATTTGACA+TGG + chr3_1:84442631-84442650 None:intergenic 30.0%
TGTACTCCTGAAACTAAAAT+GGG + chr3_1:84442753-84442772 None:intergenic 30.0%
TTGTACTCCTGAAACTAAAA+TGG + chr3_1:84442754-84442773 None:intergenic 30.0%
!! TTCATGGACTATGAAGATTT+TGG - chr3_1:84442847-84442866 Msa0382000:intron 30.0%
ATCTAGAGAATTAGAGATTG+TGG + chr3_1:84442900-84442919 None:intergenic 30.0%
AACATTCCTGAAAACGTAAT+AGG + chr3_1:84442996-84443015 None:intergenic 30.0%
TATATTCTTACTTGCAGCTA+GGG + chr3_1:84443027-84443046 None:intergenic 30.0%
ATATATTCTTACTTGCAGCT+AGG + chr3_1:84443028-84443047 None:intergenic 30.0%
ATTACTTGTAGAGTTGTTGA+TGG - chr3_1:84443055-84443074 Msa0382000:intron 30.0%
TAAGCATTTGCAAGATTGTA+TGG - chr3_1:84443125-84443144 Msa0382000:intron 30.0%
AAAATGCTCCCATTATGAAT+AGG - chr3_1:84443343-84443362 Msa0382000:CDS 30.0%
AAATGCTCCCATTATGAATA+GGG - chr3_1:84443344-84443363 Msa0382000:CDS 30.0%
TTACAGATTGAGATTCTGTT+TGG - chr3_1:84443537-84443556 Msa0382000:CDS 30.0%
ACTGGAAAATACAGAGATTA+TGG + chr3_1:84443564-84443583 None:intergenic 30.0%
CAATTAAACAAGCTAGTTAC+AGG - chr3_1:84443649-84443668 Msa0382000:CDS 30.0%
! TAGCTGCAAGATAATTTTGA+AGG + chr3_1:84443933-84443952 None:intergenic 30.0%
CAAAATTATCTTGCAGCTAT+TGG - chr3_1:84443934-84443953 Msa0382000:CDS 30.0%
!! ATAATTGCTGATCGGTTTTA+TGG + chr3_1:84444038-84444057 None:intergenic 30.0%
CTTCTGTAATAATTGCTGAT+CGG + chr3_1:84444046-84444065 None:intergenic 30.0%
TTATTACAGAAGCCCTAATA+TGG - chr3_1:84444054-84444073 Msa0382000:CDS 30.0%
TATTACAGAAGCCCTAATAT+GGG - chr3_1:84444055-84444074 Msa0382000:CDS 30.0%
! TTTGAAATGTTAGCCGAATA+TGG + chr3_1:84444226-84444245 None:intergenic 30.0%
CACTTAAGATAACTTGAATC+AGG + chr3_1:84444534-84444553 None:intergenic 30.0%
GAAGTTTCATCTTAATGAGA+AGG + chr3_1:84444562-84444581 None:intergenic 30.0%
TGACAGACAAAAGAAACAAA+AGG + chr3_1:84444596-84444615 None:intergenic 30.0%
! TTTTGTCTGTCAAATACCAT+CGG - chr3_1:84444604-84444623 Msa0382000:CDS 30.0%
ACCAGTTATTATATCTATGC+CGG + chr3_1:84444851-84444870 None:intergenic 30.0%
AAAGAAAAGAGATCAAGTGG+AGG + chr3_1:84441424-84441443 None:intergenic 35.0%
TCAACTCATGATCATGATCT+TGG + chr3_1:84441722-84441741 None:intergenic 35.0%
! TAGGGATGAACCTTATTTCA+GGG + chr3_1:84441803-84441822 None:intergenic 35.0%
! GTAAGGTTTTCATTTGTAGC+AGG + chr3_1:84441849-84441868 None:intergenic 35.0%
TCTAAGCCCAAATCAAGATT+TGG - chr3_1:84441900-84441919 Msa0382000:CDS 35.0%
TGCTCACCAAATCTTGATTT+GGG + chr3_1:84441909-84441928 None:intergenic 35.0%
TTGCTCACCAAATCTTGATT+TGG + chr3_1:84441910-84441929 None:intergenic 35.0%
ACAGTTCTATAAACTGTTCC+AGG + chr3_1:84442041-84442060 None:intergenic 35.0%
AGTTGAGGAACTAAAAAGGA+CGG - chr3_1:84442253-84442272 Msa0382000:CDS 35.0%
AACTAAAAAGGACGGAGATT+TGG - chr3_1:84442261-84442280 Msa0382000:CDS 35.0%
!!! AAGGTGCTTTATTTTGTCCA+TGG - chr3_1:84442404-84442423 Msa0382000:intron 35.0%
! AATGTATCCAGGTTTTCACT+TGG - chr3_1:84442435-84442454 Msa0382000:intron 35.0%
! TAAATTGGCCACGAAGATTT+TGG - chr3_1:84442514-84442533 Msa0382000:CDS 35.0%
! AGATTTTGGATGGTGTAACA+TGG - chr3_1:84442528-84442547 Msa0382000:CDS 35.0%
TTTCTTTGTGCTACCTTTAC+TGG + chr3_1:84442777-84442796 None:intergenic 35.0%
TAAAGGTAGCACAAAGAAAG+AGG - chr3_1:84442778-84442797 Msa0382000:intron 35.0%
AGCAAGAGAAAGTTTCTTCA+TGG - chr3_1:84442831-84442850 Msa0382000:intron 35.0%
ATATTCTTACTTGCAGCTAG+GGG + chr3_1:84443026-84443045 None:intergenic 35.0%
!! TAGAGTTGTTGATGGTTGTA+AGG - chr3_1:84443063-84443082 Msa0382000:intron 35.0%
!! AGAGTTGTTGATGGTTGTAA+GGG - chr3_1:84443064-84443083 Msa0382000:intron 35.0%
! CTTACTTGTGTTGATCTACT+AGG - chr3_1:84443101-84443120 Msa0382000:intron 35.0%
TCGATGTCCCTATTCATAAT+GGG + chr3_1:84443354-84443373 None:intergenic 35.0%
CTTCCTTAATCAAGAACCTA+CGG + chr3_1:84443389-84443408 None:intergenic 35.0%
GATTAAGGAAGAAGTTCCTT+TGG - chr3_1:84443398-84443417 Msa0382000:CDS 35.0%
CAGAAAATCTTTAGCAGCTT+GGG - chr3_1:84443461-84443480 Msa0382000:CDS 35.0%
! TCTCTGTATTTTCCAGTTGA+AGG - chr3_1:84443567-84443586 Msa0382000:CDS 35.0%
GTTCTTGATATACCTTCAAC+TGG + chr3_1:84443582-84443601 None:intergenic 35.0%
CATTACAAACACGAAGATGA+TGG + chr3_1:84443812-84443831 None:intergenic 35.0%
GTAATGCATCCATTTGATGT+TGG - chr3_1:84443826-84443845 Msa0382000:CDS 35.0%
!! ATGTTTTATAGATGGTGTCG+AGG - chr3_1:84443855-84443874 Msa0382000:CDS 35.0%
!!! TACCATCGGTTCATTTTGTT+TGG - chr3_1:84444618-84444637 Msa0382000:CDS 35.0%
AACCAAACAAAATGAACCGA+TGG + chr3_1:84444623-84444642 None:intergenic 35.0%
TCCGGCATAGATATAATAAC+TGG - chr3_1:84444847-84444866 Msa0382000:five_prime_UTR 35.0%
GATATGCATAGGGTTGTGAA+TGG - chr3_1:84441590-84441609 Msa0382000:three_prime_UTR 40.0%
GATGGAGAAGAAAACAGAAG+TGG - chr3_1:84441653-84441672 Msa0382000:three_prime_UTR 40.0%
GTGGTGGCAATTTCAAATGT+GGG - chr3_1:84441675-84441694 Msa0382000:three_prime_UTR 40.0%
! AGGGATGAACCTTATTTCAG+GGG + chr3_1:84441802-84441821 None:intergenic 40.0%
! CTAGGGATGAACCTTATTTC+AGG + chr3_1:84441804-84441823 None:intergenic 40.0%
!! GAGCTTTTGGGGGTTTATTT+GGG + chr3_1:84441827-84441846 None:intergenic 40.0%
! ATTTGTAGCAGGAGCTTTTG+GGG + chr3_1:84441838-84441857 None:intergenic 40.0%
! CATTTGTAGCAGGAGCTTTT+GGG + chr3_1:84441839-84441858 None:intergenic 40.0%
! TCATTTGTAGCAGGAGCTTT+TGG + chr3_1:84441840-84441859 None:intergenic 40.0%
! CAAGAGTTTTTCTTGGGGTA+AGG + chr3_1:84441866-84441885 None:intergenic 40.0%
AGGATTCCATCAATAGGGTA+AGG + chr3_1:84441933-84441952 None:intergenic 40.0%
! GGTTTATTATTCGGTGAACG+TGG + chr3_1:84442020-84442039 None:intergenic 40.0%
CGTTCACCGAATAATAAACC+TGG - chr3_1:84442020-84442039 Msa0382000:CDS 40.0%
GTTTGTGTTTGTGTGCATCA+CGG - chr3_1:84442208-84442227 Msa0382000:CDS 40.0%
TTTGTGTTTGTGTGCATCAC+GGG - chr3_1:84442209-84442228 Msa0382000:CDS 40.0%
!! GTTGGCTAGTTTAACAGTTG+AGG - chr3_1:84442238-84442257 Msa0382000:CDS 40.0%
!! CTTGTGATGGTGACATTTTG+TGG - chr3_1:84442311-84442330 Msa0382000:CDS 40.0%
GTGGCATGTTAGTTACCAAA+TGG - chr3_1:84442330-84442349 Msa0382000:CDS 40.0%
GGATACATTTCTTCAGTCCA+TGG + chr3_1:84442424-84442443 None:intergenic 40.0%
TGGACTGAAGAAATGTATCC+AGG - chr3_1:84442424-84442443 Msa0382000:intron 40.0%
! TGGGTGCTTTTAATCAATCG+TGG - chr3_1:84442479-84442498 Msa0382000:CDS 40.0%
TGGAGTCGAACGATCTAAAT+TGG - chr3_1:84442499-84442518 Msa0382000:CDS 40.0%
TACACCATCCAAAATCTTCG+TGG + chr3_1:84442525-84442544 None:intergenic 40.0%
! ACTCTTGTTTCCCTTCTCAT+TGG - chr3_1:84442551-84442570 Msa0382000:CDS 40.0%
GAGTCTGCAGAACATATTGA+TGG + chr3_1:84442673-84442692 None:intergenic 40.0%
!!! GCACTTCCCATTTTAGTTTC+AGG - chr3_1:84442744-84442763 Msa0382000:CDS 40.0%
! TTCAGGAGTACAACCAGTAA+AGG - chr3_1:84442761-84442780 Msa0382000:intron 40.0%
GTCGATGTCCCTATTCATAA+TGG + chr3_1:84443355-84443374 None:intergenic 40.0%
ACTCCGTAGGTTCTTGATTA+AGG - chr3_1:84443383-84443402 Msa0382000:CDS 40.0%
! CCAAGCTGCTAAAGATTTTC+TGG + chr3_1:84443463-84443482 None:intergenic 40.0%
CCAGAAAATCTTTAGCAGCT+TGG - chr3_1:84443460-84443479 Msa0382000:CDS 40.0%
AAAATCTTTAGCAGCTTGGG+TGG - chr3_1:84443464-84443483 Msa0382000:CDS 40.0%
CTTAAGCGACACTAAAACAG+CGG - chr3_1:84443621-84443640 Msa0382000:CDS 40.0%
TAGAAGAAGCCACACTACTA+TGG + chr3_1:84443692-84443711 None:intergenic 40.0%
AGTAGTGTGGCTTCTTCTAA+TGG - chr3_1:84443693-84443712 Msa0382000:CDS 40.0%
! GGCGATCGATGTTTTATAGA+TGG - chr3_1:84443847-84443866 Msa0382000:CDS 40.0%
GTATTATCCAAACTCTGTCC+TGG - chr3_1:84444012-84444031 Msa0382000:CDS 40.0%
CTACACTGTCACCCATATTA+GGG + chr3_1:84444069-84444088 None:intergenic 40.0%
TCTACACTGTCACCCATATT+AGG + chr3_1:84444070-84444089 None:intergenic 40.0%
AAACTAGGATGCCAGTATTG+TGG + chr3_1:84444312-84444331 None:intergenic 40.0%
TTCACTGCCAAACTGAAACT+AGG + chr3_1:84444327-84444346 None:intergenic 40.0%
TAGTTTCAGTTTGGCAGTGA+AGG - chr3_1:84444326-84444345 Msa0382000:CDS 40.0%
AGATACTACCTTATTCCGCA+AGG - chr3_1:84444486-84444505 Msa0382000:CDS 40.0%
TGAATCATGATTGTTGGGAG+TGG - chr3_1:84444654-84444673 Msa0382000:CDS 40.0%
GTGAAAGTAAAGGCCTTAAC+AGG - chr3_1:84444686-84444705 Msa0382000:CDS 40.0%
GTTGCTAACATTGCCTGTTA+AGG + chr3_1:84444702-84444721 None:intergenic 40.0%
!! CGAGTGACGGAATTTTACAT+CGG + chr3_1:84444795-84444814 None:intergenic 40.0%
CGATGTAAAATTCCGTCACT+CGG - chr3_1:84444793-84444812 Msa0382000:intron 40.0%
TATATCTATGCCGGAGACAA+TGG + chr3_1:84444842-84444861 None:intergenic 40.0%
TGCATAGGGTTGTGAATGGA+TGG - chr3_1:84441594-84441613 Msa0382000:three_prime_UTR 45.0%
GGAGAAGAAAACAGAAGTGG+TGG - chr3_1:84441656-84441675 Msa0382000:three_prime_UTR 45.0%
GAAGAAAACAGAAGTGGTGG+TGG - chr3_1:84441659-84441678 Msa0382000:three_prime_UTR 45.0%
! GGTGGTGGCAATTTCAAATG+TGG - chr3_1:84441674-84441693 Msa0382000:three_prime_UTR 45.0%
GTGGCAATTTCAAATGTGGG+TGG - chr3_1:84441678-84441697 Msa0382000:three_prime_UTR 45.0%
CATGATCATGATCTTGGCCA+TGG + chr3_1:84441716-84441735 None:intergenic 45.0%
GGTGACTTTGTAGAGTAACG+AGG + chr3_1:84441762-84441781 None:intergenic 45.0%
! TCAGGGGAAGCACAGTTTAA+AGG + chr3_1:84441786-84441805 None:intergenic 45.0%
ACTGTGCTTCCCCTGAAATA+AGG - chr3_1:84441790-84441809 Msa0382000:exon 45.0%
TTGGGGGTTTATTTGGGCTA+GGG + chr3_1:84441821-84441840 None:intergenic 45.0%
TTTGGGGGTTTATTTGGGCT+AGG + chr3_1:84441822-84441841 None:intergenic 45.0%
!! GGAGCTTTTGGGGGTTTATT+TGG + chr3_1:84441828-84441847 None:intergenic 45.0%
! TTTGTAGCAGGAGCTTTTGG+GGG + chr3_1:84441837-84441856 None:intergenic 45.0%
GAGCAACCTTACCCTATTGA+TGG - chr3_1:84441924-84441943 Msa0382000:CDS 45.0%
GGTGAACGTGGTGCTTTATA+TGG + chr3_1:84442008-84442027 None:intergenic 45.0%
CACTCCTAGAACACCTTTGA+TGG - chr3_1:84442079-84442098 Msa0382000:intron 45.0%
!! GATGCCATCAAAGGTGTTCT+AGG + chr3_1:84442086-84442105 None:intergenic 45.0%
GCGTAAGAGACTAACGACTA+AGG - chr3_1:84442172-84442191 Msa0382000:intron 45.0%
! AAGGACGGAGATTTGGAGTT+TGG - chr3_1:84442268-84442287 Msa0382000:CDS 45.0%
! AGGACGGAGATTTGGAGTTT+GGG - chr3_1:84442269-84442288 Msa0382000:CDS 45.0%
! AGATTTGGAGTTTGGGGCTT+TGG - chr3_1:84442276-84442295 Msa0382000:CDS 45.0%
GACAATGTGCGTGAACCATT+TGG + chr3_1:84442348-84442367 None:intergenic 45.0%
AAGCGATCCAAGTGAAAACC+TGG + chr3_1:84442445-84442464 None:intergenic 45.0%
! GGTTTTCACTTGGATCGCTT+TGG - chr3_1:84442445-84442464 Msa0382000:intron 45.0%
!! TCGCTTTGGTTCTACTCACA+TGG - chr3_1:84442459-84442478 Msa0382000:intron 45.0%
!! CGCTTTGGTTCTACTCACAT+GGG - chr3_1:84442460-84442479 Msa0382000:intron 45.0%
! TTGGCCACGAAGATTTTGGA+TGG - chr3_1:84442518-84442537 Msa0382000:CDS 45.0%
TATGTTCTGCAGACTCTCTC+TGG - chr3_1:84442677-84442696 Msa0382000:CDS 45.0%
ATGTTCTGCAGACTCTCTCT+GGG - chr3_1:84442678-84442697 Msa0382000:CDS 45.0%
TTCTCAGCCTCTTCCATTAG+TGG + chr3_1:84442707-84442726 None:intergenic 45.0%
ATGGAAGAGGCTGAGAAAGT+CGG - chr3_1:84442710-84442729 Msa0382000:CDS 45.0%
TAGATGCAGTGATGAACTCG+AGG - chr3_1:84442870-84442889 Msa0382000:CDS 45.0%
AGCAGTTGCTTCCATCTCAT+TGG + chr3_1:84442969-84442988 None:intergenic 45.0%
! CTGCTGCCTATTACGTTTTC+AGG - chr3_1:84442987-84443006 Msa0382000:intron 45.0%
! GATGGTTGTAAGGGCATGTT+TGG - chr3_1:84443073-84443092 Msa0382000:intron 45.0%
TATGAATAGGGACATCGACG+AGG - chr3_1:84443356-84443375 Msa0382000:CDS 45.0%
TCCTTTGGTATTTCCCCTAC+TGG - chr3_1:84443413-84443432 Msa0382000:CDS 45.0%
!!! CGCTGTTTTAGTGTCGCTTA+AGG + chr3_1:84443623-84443642 None:intergenic 45.0%
AGTTACAGGAGTCCTAGTAG+TGG - chr3_1:84443663-84443682 Msa0382000:CDS 45.0%
CTACTATGGTCACCACTACT+AGG + chr3_1:84443678-84443697 None:intergenic 45.0%
TAGTGGTGACCATAGTAGTG+TGG - chr3_1:84443680-84443699 Msa0382000:CDS 45.0%
GTACTTGCGGCTTTCATGTT+TGG - chr3_1:84443760-84443779 Msa0382000:CDS 45.0%
CATCGATCGCCAACATCAAA+TGG + chr3_1:84443838-84443857 None:intergenic 45.0%
TTTATGGCCAGGACAGAGTT+TGG + chr3_1:84444022-84444041 None:intergenic 45.0%
ACGACGTCAGCAGAGAAAAT+CGG - chr3_1:84444106-84444125 Msa0382000:CDS 45.0%
TATGGCCAACAGTCGAGTTA+GGG + chr3_1:84444208-84444227 None:intergenic 45.0%
ATATGGCCAACAGTCGAGTT+AGG + chr3_1:84444209-84444228 None:intergenic 45.0%
ACTCGACTGTTGGCCATATT+CGG - chr3_1:84444210-84444229 Msa0382000:CDS 45.0%
TGGAGAGGAATCCACAATAC+TGG - chr3_1:84444298-84444317 Msa0382000:CDS 45.0%
CTGGCATCCTAGTTTCAGTT+TGG - chr3_1:84444317-84444336 Msa0382000:CDS 45.0%
AATTTGGGGAGAAGACCAAG+CGG - chr3_1:84444412-84444431 Msa0382000:CDS 45.0%
CACTAATTCACTTCTCCGCT+TGG + chr3_1:84444430-84444449 None:intergenic 45.0%
GCGGAGAAGTGAATTAGTGA+TGG - chr3_1:84444431-84444450 Msa0382000:CDS 45.0%
GATGAACACCTTGCGGAATA+AGG + chr3_1:84444497-84444516 None:intergenic 45.0%
! TGTCTGAGATGAACACCTTG+CGG + chr3_1:84444504-84444523 None:intergenic 45.0%
AGGTGTTCATCTCAGACACA+TGG - chr3_1:84444506-84444525 Msa0382000:CDS 45.0%
TACGAAAGACTTGAGAGTCC+TGG + chr3_1:84444755-84444774 None:intergenic 45.0%
CTTTCGTACCAACGTTGAAG+TGG - chr3_1:84444767-84444786 Msa0382000:five_prime_UTR 45.0%
AGGTGGTGAAGTGAGCATGA+TGG - chr3_1:84441635-84441654 Msa0382000:three_prime_UTR 50.0%
CATGATCTTGGCCATGGTGA+TGG + chr3_1:84441710-84441729 None:intergenic 50.0%
! GGGGAAGCACAGTTTAAAGG+TGG + chr3_1:84441783-84441802 None:intergenic 50.0%
! ACACCTTTGATGGCATCTCC+AGG - chr3_1:84442089-84442108 Msa0382000:intron 50.0%
! GGACGGAGATTTGGAGTTTG+GGG - chr3_1:84442270-84442289 Msa0382000:CDS 50.0%
! TTTGGAGTTTGGGGCTTTGG+AGG - chr3_1:84442279-84442298 Msa0382000:CDS 50.0%
GAGGTGGTGTATGCTTGTGA+TGG - chr3_1:84442298-84442317 Msa0382000:CDS 50.0%
TCAGCCTCTTCCATTAGTGG+AGG + chr3_1:84442704-84442723 None:intergenic 50.0%
GCCAGTAGGGGAAATACCAA+AGG + chr3_1:84443417-84443436 None:intergenic 50.0%
! TGTTTCTGCCTGTGCCAGTA+GGG + chr3_1:84443430-84443449 None:intergenic 50.0%
TACTGGCACAGGCAGAAACA+GGG - chr3_1:84443430-84443449 Msa0382000:CDS 50.0%
CTTTAGCAGCTTGGGTGGTA+AGG - chr3_1:84443469-84443488 Msa0382000:CDS 50.0%
CAAGTACTAGCTGCGATGAG+AGG + chr3_1:84443747-84443766 None:intergenic 50.0%
CTCATCGCAGCTAGTACTTG+CGG - chr3_1:84443747-84443766 Msa0382000:CDS 50.0%
!! TGCTGATCGGTTTTATGGCC+AGG + chr3_1:84444033-84444052 None:intergenic 50.0%
ATGGCCAACAGTCGAGTTAG+GGG + chr3_1:84444207-84444226 None:intergenic 50.0%
CATCGGATCCACTTCAACGT+TGG + chr3_1:84444778-84444797 None:intergenic 50.0%
GGTGAAGTTCAACCGAGTGA+CGG + chr3_1:84444808-84444827 None:intergenic 50.0%
GAGACAATGGAAGACTCCAG+GGG + chr3_1:84444829-84444848 None:intergenic 50.0%
GGAGACAATGGAAGACTCCA+GGG + chr3_1:84444830-84444849 None:intergenic 50.0%
CTGGAGTCTTCCATTGTCTC+CGG - chr3_1:84444829-84444848 Msa0382000:five_prime_UTR 50.0%
GGTGGAGATAGCCATCACCA+TGG - chr3_1:84441696-84441715 Msa0382000:three_prime_UTR 55.0%
GGACCTGGAGATGCCATCAA+AGG + chr3_1:84442095-84442114 None:intergenic 55.0%
TCATCAGGATCCTCACCAGC+TGG + chr3_1:84442116-84442135 None:intergenic 55.0%
! GTGCATCACGGGTAGCTTGT+TGG - chr3_1:84442220-84442239 Msa0382000:CDS 55.0%
TCTCTCTGGGCCTCCACTAA+TGG - chr3_1:84442691-84442710 Msa0382000:CDS 55.0%
TGGGCCTCCACTAATGGAAG+AGG - chr3_1:84442697-84442716 Msa0382000:CDS 55.0%
GAAGAGGCTGAGAAAGTCGG+CGG - chr3_1:84442713-84442732 Msa0382000:CDS 55.0%
TCGACGAGGATGAACTCCGT+AGG - chr3_1:84443370-84443389 Msa0382000:CDS 55.0%
GGTATTTCCCCTACTGGCAC+AGG - chr3_1:84443419-84443438 Msa0382000:CDS 55.0%
GTTTCTGCCTGTGCCAGTAG+GGG + chr3_1:84443429-84443448 None:intergenic 55.0%
!! CTGTTTCTGCCTGTGCCAGT+AGG + chr3_1:84443431-84443450 None:intergenic 55.0%
CTACTGGCACAGGCAGAAAC+AGG - chr3_1:84443429-84443448 Msa0382000:CDS 55.0%
CTCACCCCTAACTCGACTGT+TGG - chr3_1:84444200-84444219 Msa0382000:CDS 55.0%
ACTCGGTTGAACTTCACCCC+TGG - chr3_1:84444810-84444829 Msa0382000:five_prime_UTR 55.0%
CGGAGACAATGGAAGACTCC+AGG + chr3_1:84444831-84444850 None:intergenic 55.0%
ATGGCATCTCCAGGTCCAGC+TGG - chr3_1:84442098-84442117 Msa0382000:intron 60.0%
ATCTCCAGGTCCAGCTGGTG+AGG - chr3_1:84442103-84442122 Msa0382000:intron 60.0%
!! GGAGTTTGGGGCTTTGGAGG+TGG - chr3_1:84442282-84442301 Msa0382000:CDS 60.0%
GGATCCTCACCAGCTGGACC+TGG + chr3_1:84442110-84442129 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 84441418 84444937 84441418 ID=Msa0382000;Name=Msa0382000
chr3_1 mRNA 84441418 84444937 84441418 ID=Msa0382000-mRNA-1;Parent=Msa0382000;Name=Msa0382000-mRNA-1;_AED=0.05;_eAED=0.05;_QI=170|1|1|1|0.8|0.66|6|383|768
chr3_1 exon 84441418 84442062 84441418 ID=Msa0382000-mRNA-1:exon:21933;Parent=Msa0382000-mRNA-1
chr3_1 exon 84442203 84442405 84442203 ID=Msa0382000-mRNA-1:exon:21932;Parent=Msa0382000-mRNA-1
chr3_1 exon 84442479 84442772 84442479 ID=Msa0382000-mRNA-1:exon:21931;Parent=Msa0382000-mRNA-1
chr3_1 exon 84442870 84442990 84442870 ID=Msa0382000-mRNA-1:exon:21930;Parent=Msa0382000-mRNA-1
chr3_1 exon 84443320 84444786 84443320 ID=Msa0382000-mRNA-1:exon:21929;Parent=Msa0382000-mRNA-1
chr3_1 exon 84444808 84444937 84444808 ID=Msa0382000-mRNA-1:exon:21928;Parent=Msa0382000-mRNA-1
chr3_1 five_prime_UTR 84444808 84444937 84444808 ID=Msa0382000-mRNA-1:five_prime_utr;Parent=Msa0382000-mRNA-1
chr3_1 five_prime_UTR 84444747 84444786 84444747 ID=Msa0382000-mRNA-1:five_prime_utr;Parent=Msa0382000-mRNA-1
chr3_1 CDS 84443320 84444746 84443320 ID=Msa0382000-mRNA-1:cds;Parent=Msa0382000-mRNA-1
chr3_1 CDS 84442870 84442990 84442870 ID=Msa0382000-mRNA-1:cds;Parent=Msa0382000-mRNA-1
chr3_1 CDS 84442479 84442772 84442479 ID=Msa0382000-mRNA-1:cds;Parent=Msa0382000-mRNA-1
chr3_1 CDS 84442203 84442405 84442203 ID=Msa0382000-mRNA-1:cds;Parent=Msa0382000-mRNA-1
chr3_1 CDS 84441801 84442062 84441801 ID=Msa0382000-mRNA-1:cds;Parent=Msa0382000-mRNA-1
chr3_1 three_prime_UTR 84441418 84441800 84441418 ID=Msa0382000-mRNA-1:three_prime_utr;Parent=Msa0382000-mRNA-1
Gene Sequence

>Msa0382000

ATGGATGGTAATAATAATAAGCATCAAGGTGGTGAAGTGAGCATGATGGAGAAGAAAACAGAAGTGGTGGTGGCAATTTCAAATGTGGGTGGAGATAGCCATCACCATGGCCAAGATCATGATCATGAGTTGAAAGTAGTTGAATGTTCACCTCGTTACTCTACAAAGTCACCACCTTTAAACTGTGCTTCCCCTGAAATAAGGTTCATCCCTAGCCCAAATAAACCCCCAAAAGCTCCTGCTACAAATGAAAACCTTACCCCAAGAAAAACTCTTGTAAGATCAGTGTTCTCTAAGCCCAAATCAAGATTTGGTGAGCAACCTTACCCTATTGATGGAATCCTTTTAGAAGAGAATGTTACTTCAAATTTGCAAGATCAATTAGCTGTTACTTCACCATATAAAGCACCACGTTCACCGAATAATAAACCTGGAACAGTTTATAGAACTGTTTCGATTACTTCTGTCGTCACTCCTAGAACACCTTTGATGGCATCTCCAGGTCCAGCTGGTGAGGATCCTGATGAAATCATATACAAGAAAGTTGAATTTAGTAAAGGCAAGCGTAAGAGACTAACGACTAAGGTTTTGATTGAGTTGTTTGTGTTTGTGTGCATCACGGGTAGCTTGTTGGCTAGTTTAACAGTTGAGGAACTAAAAAGGACGGAGATTTGGAGTTTGGGGCTTTGGAGGTGGTGTATGCTTGTGATGGTGACATTTTGTGGCATGTTAGTTACCAAATGGTTCACGCACATTGTCGTTTTCTTGATTGAAATGAACTTTTTGTTGAAGAAAAAGGTGCTTTATTTTGTCCATGGACTGAAGAAATGTATCCAGGTTTTCACTTGGATCGCTTTGGTTCTACTCACATGGGTGCTTTTAATCAATCGTGGAGTCGAACGATCTAAATTGGCCACGAAGATTTTGGATGGTGTAACATGGACTCTTGTTTCCCTTCTCATTGGAACATTTTTGTGGGTCATAAAGACATTGTTGCTAAAGATTTTGGCATCGAGTTTCCATGTCAAATCTTTCTTTGATCGAATTCAAGAATCAATCTTCCATCAATATGTTCTGCAGACTCTCTCTGGGCCTCCACTAATGGAAGAGGCTGAGAAAGTCGGCGGATCTCAAAGCACTTCCCATTTTAGTTTCAGGAGTACAACCAGTAAAGGTAGCACAAAGAAAGAGGTTATTGATATGGCAAAGCTTCACAAGATGAAGCAAGAGAAAGTTTCTTCATGGACTATGAAGATTTTGGTAGATGCAGTGATGAACTCGAGGCTGTCCACAATCTCTAATTCTCTAGATGAAAGTTTTTATGATGTAGAAAATGAACAGAATGATAAAGAAATTACCAATGAGATGGAAGCAACTGCTGCTGCCTATTACGTTTTCAGGAATGTTGCTGCTTCCCCTAGCTGCAAGGACATCGACGAGGATGAACTCCGTAGGTTCTTGATTAAGGAAGAAGTTCCTTTGGTATTTCCCCTACTGGCACAGGCAGAAACAGGGCTGATTACCAGAAAATCTTTAGCAGCTTGGGTGTTGAAGGTATATCAAGAACGTAGAGCACTCGCGCACGCCTTAAGCGACACTAAAACAGCGGTTAAACAATTAAACAAGCTAGTTACAGGAGTCCTAGTAGTGGTGACCATAGTAGTGTGGCTTCTTCTAATGGAGATTGCAACTACAAAAGTTCTTGTATTCCTCTCATCGCAGCTAGTACTTGCGGCTTTCATGTTTGGAAACACGTGCAAGAATATATTTGAAGCCATCATCTTCGTGTTTGTAATGCATCCATTTGATGTTGGCGATCGATGTTTTATAGATGGTGTCGAGCTATTGGTTGAAGAAATGAATATACTGACAACAGTATTCTTGAAACTTAATAATGAAAAGGTGTATTATCCAAACTCTGTCCTGGCCATAAAACCGATCAGCAATTATTACAGAAGCCCTAATATGGGTGACAGTGTAGAGTTCTCAGTTGATTTTACGACGTCAGCAGAGAAAATCGGATCACTGAATGAAAAAATAAAGAGGTATTTGGAGAGGAATCCACAATACTGGCATCCTAGTTTCAGTTTGGCAGTGAAGGAGATTGAAAATGTAAATAAGATTAAGATGGGTCTTTATGTTACTCACACAATGAACTTTCAAGAATTTGGGGAGAAGACCAAGCGGAGAAGTGAATTAGTGATGGAAGTAAAGAAAATATTTGAAGAGCTCAATATCAGATACTACCTTATTCCGCAAGGTGTTCATCTCAGACACATGGAACCTGATTCAAGTTATCTTAAGTGA
Protein sequence

>Msa0382000

MDGNNNKHQGGEVSMMEKKTEVVVAISNVGGDSHHHGQDHDHELKVVECSPRYSTKSPPLNCASPEIRFIPSPNKPPKAPATNENLTPRKTLVRSVFSKPKSRFGEQPYPIDGILLEENVTSNLQDQLAVTSPYKAPRSPNNKPGTVYRTVSITSVVTPRTPLMASPGPAGEDPDEIIYKKVEFSKGKRKRLTTKVLIELFVFVCITGSLLASLTVEELKRTEIWSLGLWRWCMLVMVTFCGMLVTKWFTHIVVFLIEMNFLLKKKVLYFVHGLKKCIQVFTWIALVLLTWVLLINRGVERSKLATKILDGVTWTLVSLLIGTFLWVIKTLLLKILASSFHVKSFFDRIQESIFHQYVLQTLSGPPLMEEAEKVGGSQSTSHFSFRSTTSKGSTKKEVIDMAKLHKMKQEKVSSWTMKILVDAVMNSRLSTISNSLDESFYDVENEQNDKEITNEMEATAAAYYVFRNVAASPSCKDIDEDELRRFLIKEEVPLVFPLLAQAETGLITRKSLAAWVLKVYQERRALAHALSDTKTAVKQLNKLVTGVLVVVTIVVWLLLMEIATTKVLVFLSSQLVLAAFMFGNTCKNIFEAIIFVFVMHPFDVGDRCFIDGVELLVEEMNILTTVFLKLNNEKVYYPNSVLAIKPISNYYRSPNMGDSVEFSVDFTTSAEKIGSLNEKIKRYLERNPQYWHPSFSLAVKEIENVNKIKMGLYVTHTMNFQEFGEKTKRRSELVMEVKKIFEELNIRYYLIPQGVHLRHMEPDSSYLK*