Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520490 | XP_024633438.1 | 98.184 | 771 | 11 | 2 | 1 | 768 | 1 | 771 | 0.0 | 1552 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520490 | sp|Q9LYG9|MSL10_ARATH | 58.345 | 713 | 278 | 9 | 49 | 757 | 33 | 730 | 0.0 | 827 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520490 | G7J8E6 | 98.184 | 771 | 11 | 2 | 1 | 768 | 1 | 771 | 0.0 | 1552 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0382000 | Msa0520490 | 0.883994 | 2.799125e-71 | -8.615850e-47 |
| Msa0431300 | Msa0520490 | 0.838238 | 3.238815e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520490 | MtrunA17_Chr3g0136211 | 98.184 | 771 | 11 | 2 | 1 | 768 | 1 | 771 | 0.0 | 1552 |
| Msa0520490 | MtrunA17_Chr3g0136161 | 86.305 | 774 | 98 | 4 | 1 | 768 | 1 | 772 | 0.0 | 1301 |
| Msa0520490 | MtrunA17_Chr3g0136141 | 80.449 | 757 | 125 | 5 | 15 | 768 | 1 | 737 | 0.0 | 1203 |
| Msa0520490 | MtrunA17_Chr2g0300341 | 50.066 | 757 | 314 | 15 | 19 | 757 | 15 | 725 | 0.0 | 688 |
| Msa0520490 | MtrunA17_Chr8g0369461 | 46.528 | 576 | 285 | 10 | 195 | 760 | 129 | 691 | 1.07e-164 | 492 |
| Msa0520490 | MtrunA17_Chr1g0211561 | 40.117 | 683 | 341 | 11 | 137 | 767 | 251 | 917 | 3.19e-158 | 483 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0520490 | AT5G12080.1 | 58.345 | 713 | 278 | 9 | 49 | 757 | 33 | 730 | 0.0 | 827 |
| Msa0520490 | AT5G12080.2 | 58.345 | 713 | 278 | 9 | 49 | 757 | 33 | 730 | 0.0 | 827 |
| Msa0520490 | AT5G12080.3 | 58.345 | 713 | 278 | 9 | 49 | 757 | 33 | 730 | 0.0 | 827 |
| Msa0520490 | AT5G19520.1 | 52.983 | 704 | 312 | 6 | 58 | 757 | 50 | 738 | 0.0 | 744 |
| Msa0520490 | AT5G19520.2 | 52.983 | 704 | 312 | 6 | 58 | 757 | 50 | 738 | 0.0 | 744 |
| Msa0520490 | AT2G17010.1 | 41.556 | 604 | 317 | 5 | 188 | 760 | 292 | 890 | 4.63e-158 | 482 |
| Msa0520490 | AT1G53470.1 | 39.625 | 694 | 357 | 12 | 115 | 760 | 181 | 860 | 1.35e-155 | 475 |
| Msa0520490 | AT3G14810.1 | 42.197 | 692 | 344 | 15 | 115 | 765 | 188 | 864 | 5.92e-155 | 473 |
| Msa0520490 | AT1G78610.1 | 42.296 | 636 | 325 | 8 | 166 | 767 | 211 | 838 | 9.32e-154 | 469 |
| Msa0520490 | AT2G17000.2 | 41.408 | 611 | 317 | 9 | 182 | 760 | 222 | 823 | 3.63e-144 | 444 |
| Msa0520490 | AT2G17000.1 | 41.408 | 611 | 317 | 9 | 182 | 760 | 222 | 823 | 5.91e-144 | 444 |
| Msa0520490 | AT3G14810.2 | 39.623 | 689 | 325 | 16 | 115 | 762 | 188 | 826 | 1.05e-134 | 420 |
| Msa0520490 | AT2G17010.2 | 35.833 | 360 | 195 | 5 | 188 | 516 | 292 | 646 | 2.41e-64 | 227 |
Find 183 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATGAACTTTCAAGAATT+TGG | 0.059991 | 3_4:-73020574 | Msa0520490:CDS |
| GACATTGTTGCTAAAGATTT+TGG | 0.123829 | 3_4:-73022375 | Msa0520490:CDS |
| TTTCTTTGTGCTACCTTTAC+TGG | 0.130051 | 3_4:+73022196 | None:intergenic |
| TAAATTGGCCACGAAGATTT+TGG | 0.178672 | 3_4:-73022456 | Msa0520490:CDS |
| TCTACACTGTCACCCATATT+AGG | 0.187404 | 3_4:+73020903 | None:intergenic |
| TCATTTGTAGCAGGAGCTTT+TGG | 0.190150 | 3_4:+73023133 | None:intergenic |
| TTGTACTCCTGAAACTAAAA+TGG | 0.194746 | 3_4:+73022219 | None:intergenic |
| CAATGAACTTTCAAGAATTT+GGG | 0.230393 | 3_4:-73020573 | Msa0520490:CDS |
| AGATTTGGAGTTTGGGGCTT+TGG | 0.250678 | 3_4:-73022694 | Msa0520490:CDS |
| AAGTAACATTCTCTTCTAAA+AGG | 0.256225 | 3_4:+73023020 | None:intergenic |
| TTCATGGACTATGAAGATTT+TGG | 0.258155 | 3_4:-73022123 | Msa0520490:CDS |
| ACTCCGTAGGTTCTTGATTA+AGG | 0.262247 | 3_4:-73021587 | Msa0520490:CDS |
| CTAGGGATGAACCTTATTTC+AGG | 0.265146 | 3_4:+73023169 | None:intergenic |
| TCAGGGGAAGCACAGTTTAA+AGG | 0.276027 | 3_4:+73023187 | None:intergenic |
| AAGGACGGAGATTTGGAGTT+TGG | 0.278610 | 3_4:-73022702 | Msa0520490:CDS |
| TTATTACAGAAGCCCTAATA+TGG | 0.287671 | 3_4:-73020916 | Msa0520490:CDS |
| TTGTTCACCAAATCTTGATT+TGG | 0.289978 | 3_4:+73023063 | None:intergenic |
| TATGTTCTGCAGACTCTCTC+TGG | 0.301029 | 3_4:-73022293 | Msa0520490:CDS |
| GTACTTGCGGCTTTCATGTT+TGG | 0.306392 | 3_4:-73021210 | Msa0520490:CDS |
| ACTGTTCCAGGTTTATTATT+CGG | 0.316517 | 3_4:+73022944 | None:intergenic |
| TTCTCAGCCTCTTCCATTAG+TGG | 0.319988 | 3_4:+73022266 | None:intergenic |
| TGGAGTCGAACGATCTAAAT+TGG | 0.321444 | 3_4:-73022471 | Msa0520490:CDS |
| TAACAGTTGAGGAACTAAAA+AGG | 0.321821 | 3_4:-73022721 | Msa0520490:CDS |
| GATGAACACCTTGCGGAATA+AGG | 0.326639 | 3_4:+73020476 | None:intergenic |
| TCTAAAAGGATTCCATCAAT+AGG | 0.336245 | 3_4:+73023034 | None:intergenic |
| GGTGAACGTGGTGCTTTATA+TGG | 0.336535 | 3_4:+73022965 | None:intergenic |
| ACTGTGCTTCCCCTGAAATA+AGG | 0.336839 | 3_4:-73023180 | Msa0520490:CDS |
| CTACTGGCACAGGCAGAAAC+AGG | 0.337087 | 3_4:-73021541 | Msa0520490:CDS |
| TCTCTCTGGGCCTCCACTAA+TGG | 0.337430 | 3_4:-73022279 | Msa0520490:CDS |
| CACTCCTAGAACACCTTTGA+TGG | 0.340051 | 3_4:-73022891 | Msa0520490:CDS |
| TTTATGGCTAGGACAGAGTT+TGG | 0.349369 | 3_4:+73020951 | None:intergenic |
| CAGAAAATCTTTAGCAGCTT+GGG | 0.350080 | 3_4:-73021509 | Msa0520490:CDS |
| AGGACGGAGATTTGGAGTTT+GGG | 0.350085 | 3_4:-73022701 | Msa0520490:CDS |
| ACAGTTCTATAAACTGTTCC+AGG | 0.358716 | 3_4:+73022932 | None:intergenic |
| TGTTCACCAAATCTTGATTT+GGG | 0.359204 | 3_4:+73023064 | None:intergenic |
| TTTGGAGTTTGGGGCTTTGG+AGG | 0.367529 | 3_4:-73022691 | Msa0520490:CDS |
| TCTAAGCCCAAATCAAGATT+TGG | 0.368072 | 3_4:-73023070 | Msa0520490:CDS |
| AGCAAGAGAAAGTTTCTTCA+TGG | 0.373517 | 3_4:-73022139 | Msa0520490:CDS |
| TCCTTTGGTATTTCCCCTAC+TGG | 0.375771 | 3_4:-73021557 | Msa0520490:CDS |
| GTGAAAGTAAAGGCCTTAAC+AGG | 0.375879 | 3_4:-73020284 | Msa0520490:three_prime_UTR |
| AAAGAAAGAGGTTATTGATA+TGG | 0.383412 | 3_4:-73022180 | Msa0520490:CDS |
| AACATTCCTGAAAACGTAAT+AGG | 0.384096 | 3_4:+73021977 | None:intergenic |
| AGTAGTGTGGCTTCTTCTAA+TGG | 0.385108 | 3_4:-73021277 | Msa0520490:CDS |
| GATGCCATCAAAGGTGTTCT+AGG | 0.387245 | 3_4:+73022887 | None:intergenic |
| TCAACTCATGATCATGATCT+TGG | 0.387525 | 3_4:+73023251 | None:intergenic |
| GGAGTTTGGGGCTTTGGAGG+TGG | 0.388035 | 3_4:-73022688 | Msa0520490:CDS |
| CTACACTGTCACCCATATTA+GGG | 0.388576 | 3_4:+73020904 | None:intergenic |
| CACTTAAGATAACTTGAATC+AGG | 0.390741 | 3_4:+73020439 | None:intergenic |
| TTCTTGTATATGATTTCATC+AGG | 0.393170 | 3_4:+73022842 | None:intergenic |
| ACTCTTGTTTCCCTTCTCAT+TGG | 0.393699 | 3_4:-73022419 | Msa0520490:CDS |
| CAATTAAACAAGCTAGTTAC+AGG | 0.398707 | 3_4:-73021321 | Msa0520490:CDS |
| CCAGAAAATCTTTAGCAGCT+TGG | 0.399961 | 3_4:-73021510 | Msa0520490:CDS |
| ATTCATGAATCATGATTGTT+GGG | 0.401352 | 3_4:-73020321 | Msa0520490:three_prime_UTR |
| CACTAATTCACTTCTCCGCT+TGG | 0.404975 | 3_4:+73020543 | None:intergenic |
| GTTGCTAACATTGCCTGTTA+AGG | 0.406838 | 3_4:+73020271 | None:intergenic |
| AATTCATGAATCATGATTGT+TGG | 0.409830 | 3_4:-73020322 | Msa0520490:three_prime_UTR |
| CTGGCATCCTAGTTTCAGTT+TGG | 0.410393 | 3_4:-73020653 | Msa0520490:CDS |
| GATTAAGGAAGAAGTTCCTT+TGG | 0.415393 | 3_4:-73021572 | Msa0520490:CDS |
| CTACTATGGTCACCACTACT+AGG | 0.415578 | 3_4:+73021295 | None:intergenic |
| TCCGGCATAGATATAATAAC+TGG | 0.425119 | 3_4:-73020123 | Msa0520490:three_prime_UTR |
| CTGTTTCTGCCTGTGCCAGT+AGG | 0.426864 | 3_4:+73021542 | None:intergenic |
| CATCGATCGCCAACATCAAA+TGG | 0.429406 | 3_4:+73021135 | None:intergenic |
| GACAATGTGCGTGAACCATT+TGG | 0.437003 | 3_4:+73022625 | None:intergenic |
| TGGAGAGGAATCCACAATAC+TGG | 0.438670 | 3_4:-73020672 | Msa0520490:CDS |
| AGCAGTTGCTTCCATCTCAT+TGG | 0.438791 | 3_4:+73022004 | None:intergenic |
| GAGTCTGCAGAACATATTGA+TGG | 0.441671 | 3_4:+73022300 | None:intergenic |
| TGTTTCTGCCTGTGCCAGTA+GGG | 0.443402 | 3_4:+73021543 | None:intergenic |
| GAACAACCTTACCCTATTGA+TGG | 0.443872 | 3_4:-73023046 | Msa0520490:CDS |
| TATATTCTTACTTGCAGCTA+GGG | 0.445433 | 3_4:+73021946 | None:intergenic |
| CTTGAAACTTAATAATGAAA+AGG | 0.452787 | 3_4:-73020982 | Msa0520490:CDS |
| CTAAAAGGATTCCATCAATA+GGG | 0.453814 | 3_4:+73023035 | None:intergenic |
| ACGACGTCAGCAGAGAAAAT+CGG | 0.461578 | 3_4:-73020864 | Msa0520490:CDS |
| TAGAAGAAGCCACACTACTA+TGG | 0.462238 | 3_4:+73021281 | None:intergenic |
| TATATCTTTGTGATATGCAT+AGG | 0.462242 | 3_4:-73023391 | Msa0520490:five_prime_UTR |
| GTGCATCACGGGTAGCTTGT+TGG | 0.471724 | 3_4:-73022750 | Msa0520490:CDS |
| ATCTAGAGAATTAGAGATTG+TGG | 0.475217 | 3_4:+73022073 | None:intergenic |
| TCGCTTTGGTTCTACTCACA+TGG | 0.480459 | 3_4:-73022511 | Msa0520490:CDS |
| CTTTCGTACCGACGTTGAAG+TGG | 0.480601 | 3_4:-73020203 | Msa0520490:three_prime_UTR |
| GGTATTTCCCCTACTGGCAC+AGG | 0.484922 | 3_4:-73021551 | Msa0520490:CDS |
| ATGAAAGAAAAGAGATCAAG+TGG | 0.485907 | 3_4:+73023542 | None:intergenic |
| TGTACTCCTGAAACTAAAAT+GGG | 0.489996 | 3_4:+73022220 | None:intergenic |
| GGATCCTCACCAGCTGGACC+TGG | 0.490344 | 3_4:+73022863 | None:intergenic |
| GATTATTAAATTATGTATCC+AGG | 0.492367 | 3_4:-73020236 | Msa0520490:three_prime_UTR |
| GTGGCATGTTAGTTACCAAA+TGG | 0.493145 | 3_4:-73022640 | Msa0520490:CDS |
| AAGAAAGTTGAATTTAGTAA+AGG | 0.494912 | 3_4:-73022824 | Msa0520490:CDS |
| AAATGTAAATAAGATTAAGA+TGG | 0.497083 | 3_4:-73020614 | Msa0520490:CDS |
| ATCTCCAGGTCCAGCTGGTG+AGG | 0.497675 | 3_4:-73022867 | Msa0520490:CDS |
| CGGAGACAATGGAAGACTCC+AGG | 0.502739 | 3_4:+73020142 | None:intergenic |
| AATGTAAATAAGATTAAGAT+GGG | 0.505449 | 3_4:-73020613 | Msa0520490:CDS |
| TATATCTATGCCGGAGACAA+TGG | 0.510742 | 3_4:+73020131 | None:intergenic |
| TAGTTTCAGTTTGGCAGTGA+AGG | 0.512844 | 3_4:-73020644 | Msa0520490:CDS |
| TTTGTGTTTGTGTGCATCAC+GGG | 0.513377 | 3_4:-73022761 | Msa0520490:CDS |
| CGCTTTGGTTCTACTCACAT+GGG | 0.514104 | 3_4:-73022510 | Msa0520490:CDS |
| TGGACTGAAGAAATGTATCC+AGG | 0.514151 | 3_4:-73022546 | Msa0520490:CDS |
| ATGGCATCTCCAGGTCCAGC+TGG | 0.514371 | 3_4:-73022872 | Msa0520490:CDS |
| GCCGAAAATAAAAGATCGTA+AGG | 0.515257 | 3_4:-73020055 | Msa0520490:three_prime_UTR |
| ATATCTTTGTGATATGCATA+GGG | 0.515808 | 3_4:-73023390 | Msa0520490:five_prime_UTR |
| TACGAAAGACTTGAGAGTCC+TGG | 0.516103 | 3_4:+73020218 | None:intergenic |
| TTCAGGAGTACAACCAGTAA+AGG | 0.520751 | 3_4:-73022209 | Msa0520490:CDS |
| ATATATTCTTACTTGCAGCT+AGG | 0.525421 | 3_4:+73021945 | None:intergenic |
| ATGTTCTGCAGACTCTCTCT+GGG | 0.525655 | 3_4:-73022292 | Msa0520490:CDS |
| TAGGGATGAACCTTATTTCA+GGG | 0.528282 | 3_4:+73023170 | None:intergenic |
| TGACAGACCAAAGAAACAAA+AGG | 0.529896 | 3_4:+73020377 | None:intergenic |
| TCATCAGGATCCTCACCAGC+TGG | 0.532211 | 3_4:+73022857 | None:intergenic |
| CGTTCACCGAATAATAAACC+TGG | 0.533198 | 3_4:-73022950 | Msa0520490:CDS |
| GTTGGCTAGTTTAACAGTTG+AGG | 0.533975 | 3_4:-73022732 | Msa0520490:CDS |
| ACCAGTTATTATATCTATGC+CGG | 0.534817 | 3_4:+73020122 | None:intergenic |
| CATTACAAACACGAAGATGA+TGG | 0.535612 | 3_4:+73021161 | None:intergenic |
| GAAGTTTCATCTTAATGAGA+AGG | 0.536053 | 3_4:+73020411 | None:intergenic |
| ACACCTTTGATGGCATCTCC+AGG | 0.537728 | 3_4:-73022881 | Msa0520490:CDS |
| GGATACATTTCTTCAGTCCA+TGG | 0.539549 | 3_4:+73022549 | None:intergenic |
| GGACGGAGATTTGGAGTTTG+GGG | 0.539859 | 3_4:-73022700 | Msa0520490:CDS |
| TACACCATCCAAAATCTTCG+TGG | 0.540293 | 3_4:+73022448 | None:intergenic |
| TATTACAGAAGCCCTAATAT+GGG | 0.542039 | 3_4:-73020915 | Msa0520490:CDS |
| AGGATTCCATCAATAGGGTA+AGG | 0.542280 | 3_4:+73023040 | None:intergenic |
| TTTGGTCTGTCAAATACCAT+CGG | 0.542714 | 3_4:-73020366 | Msa0520490:three_prime_UTR |
| TAAAGGTAGCACAAAGAAAG+AGG | 0.543539 | 3_4:-73022192 | Msa0520490:CDS |
| TGAATCATGATTGTTGGGAG+TGG | 0.544237 | 3_4:-73020316 | Msa0520490:three_prime_UTR |
| GAGGTGGTGTATGCTTGTGA+TGG | 0.544535 | 3_4:-73022672 | Msa0520490:CDS |
| GGTAATAATAATAAGCATCA+AGG | 0.546427 | 3_4:-73023355 | Msa0520490:CDS |
| AAGCGATCCAAGTGAAAACC+TGG | 0.546867 | 3_4:+73022528 | None:intergenic |
| CATGATCTTGGCCATGGTGA+TGG | 0.547727 | 3_4:+73023263 | None:intergenic |
| ACTCGGTTGAACTTCACCCC+TGG | 0.550304 | 3_4:-73020160 | Msa0520490:three_prime_UTR |
| TAAAGAAATTACCAATGAGA+TGG | 0.550653 | 3_4:-73022015 | Msa0520490:CDS |
| CTTCTGTAATAATTGCTGAT+CGG | 0.555225 | 3_4:+73020927 | None:intergenic |
| TCAGCCTCTTCCATTAGTGG+AGG | 0.556564 | 3_4:+73022269 | None:intergenic |
| GTAATGCATCCATTTGATGT+TGG | 0.558028 | 3_4:-73021144 | Msa0520490:CDS |
| ATAAATAAATAAAATACAAG+AGG | 0.560960 | 3_4:+73023502 | None:intergenic |
| AAACTAGGATGCCAGTATTG+TGG | 0.562729 | 3_4:+73020661 | None:intergenic |
| CTGGAGTCTTCCATTGTCTC+CGG | 0.563338 | 3_4:-73020141 | Msa0520490:three_prime_UTR |
| TGGGCCTCCACTAATGGAAG+AGG | 0.563345 | 3_4:-73022273 | Msa0520490:CDS |
| GCGTAAGAGACTAACAACTA+AGG | 0.563436 | 3_4:-73022798 | Msa0520490:CDS |
| CTTCCTTAATCAAGAACCTA+CGG | 0.566575 | 3_4:+73021584 | None:intergenic |
| GTTTCTGCCTGTGCCAGTAG+GGG | 0.569425 | 3_4:+73021544 | None:intergenic |
| GTTTGTGTTTGTGTGCATCA+CGG | 0.570532 | 3_4:-73022762 | Msa0520490:CDS |
| CATTGGATCCACTTCAACGT+CGG | 0.573753 | 3_4:+73020195 | None:intergenic |
| GTTCTATATAGTGAAAGTAA+AGG | 0.574441 | 3_4:-73020294 | Msa0520490:three_prime_UTR |
| CAATGTAAAATTCCGTCACT+CGG | 0.576442 | 3_4:-73020177 | Msa0520490:three_prime_UTR |
| AAAATCTTTAGCAGCTTGGG+TGG | 0.582100 | 3_4:-73021506 | Msa0520490:intron |
| AACCAAACAAAATGAACCGA+TGG | 0.590882 | 3_4:+73020350 | None:intergenic |
| TGCATAGGGTTGTGAATGGA+TGG | 0.590999 | 3_4:-73023376 | Msa0520490:exon |
| GAAGAAAACAGAAGTGGTGG+TGG | 0.592280 | 3_4:-73023311 | Msa0520490:CDS |
| AATAAATTAGGTATTTGGAG+AGG | 0.593844 | 3_4:-73020687 | Msa0520490:intron |
| CTCATCGCAGCTAGTACTTG+CGG | 0.594578 | 3_4:-73021223 | Msa0520490:CDS |
| GCGGAGAAGTGAATTAGTGA+TGG | 0.596207 | 3_4:-73020539 | Msa0520490:CDS |
| GATATGCATAGGGTTGTGAA+TGG | 0.598817 | 3_4:-73023380 | Msa0520490:exon |
| CAAGTACTAGCTGCGATGAG+AGG | 0.600062 | 3_4:+73021226 | None:intergenic |
| GGAGACAATGGAAGACTCCA+GGG | 0.600835 | 3_4:+73020143 | None:intergenic |
| TTCACTGCCAAACTGAAACT+AGG | 0.601450 | 3_4:+73020646 | None:intergenic |
| GTGGTGGCAATTTCAAATGT+GGG | 0.602248 | 3_4:-73023295 | Msa0520490:CDS |
| GGACCTGGAGATGCCATCAA+AGG | 0.602592 | 3_4:+73022878 | None:intergenic |
| GATCAAAGAAAGATTTGACA+TGG | 0.605754 | 3_4:+73022342 | None:intergenic |
| GGTTTATTATTCGGTGAACG+TGG | 0.607267 | 3_4:+73022953 | None:intergenic |
| ATATTCTTACTTGCAGCTAG+GGG | 0.610117 | 3_4:+73021947 | None:intergenic |
| ATGGAAGAGGCTGAGAAAGT+CGG | 0.617688 | 3_4:-73022260 | Msa0520490:CDS |
| CATGATCATGATCTTGGCCA+TGG | 0.624053 | 3_4:+73023257 | None:intergenic |
| GGTGGTGGCAATTTCAAATG+TGG | 0.624592 | 3_4:-73023296 | Msa0520490:CDS |
| GTGGCAATTTCAAATGTGGG+TGG | 0.626198 | 3_4:-73023292 | Msa0520490:CDS |
| AATGAACTTTCAAGAATTTG+GGG | 0.631242 | 3_4:-73020572 | Msa0520490:CDS |
| AGGGATGAACCTTATTTCAG+GGG | 0.633053 | 3_4:+73023171 | None:intergenic |
| AGGTGGTGAAGTGAGCATGA+TGG | 0.635799 | 3_4:-73023335 | Msa0520490:CDS |
| GGGGAAGCACAGTTTAAAGG+TGG | 0.637546 | 3_4:+73023190 | None:intergenic |
| TACTGGCACAGGCAGAAACA+GGG | 0.640432 | 3_4:-73021540 | Msa0520490:CDS |
| GGTGAAGTTCAACCGAGTGA+CGG | 0.641071 | 3_4:+73020165 | None:intergenic |
| GCCAGTAGGGGAAATACCAA+AGG | 0.642812 | 3_4:+73021556 | None:intergenic |
| AGATACTACCTTATTCCGCA+AGG | 0.644323 | 3_4:-73020484 | Msa0520490:CDS |
| AGGTGTTCATCTCAGACACA+TGG | 0.650077 | 3_4:-73020464 | Msa0520490:CDS |
| AAAGAAAAGAGATCAAGTGG+AGG | 0.670232 | 3_4:+73023545 | None:intergenic |
| AGTTACAGGAGTCCTAGTAG+TGG | 0.671864 | 3_4:-73021307 | Msa0520490:CDS |
| AATAATAATAAGCATCAAGG+TGG | 0.672497 | 3_4:-73023352 | Msa0520490:CDS |
| TCGACGAGGATGAACTCCGT+AGG | 0.674026 | 3_4:-73021600 | Msa0520490:CDS |
| GATGGAGAAGAAAACAGAAG+TGG | 0.675509 | 3_4:-73023317 | Msa0520490:CDS |
| CTTAAGCGACACTAAAACAG+CGG | 0.676974 | 3_4:-73021349 | Msa0520490:CDS |
| TAGTGGTGACCATAGTAGTG+TGG | 0.677764 | 3_4:-73021290 | Msa0520490:CDS |
| GGAGAAGAAAACAGAAGTGG+TGG | 0.683682 | 3_4:-73023314 | Msa0520490:CDS |
| GAAGAGGCTGAGAAAGTCGG+CGG | 0.686077 | 3_4:-73022257 | Msa0520490:CDS |
| AATTTGGGGAGAAGACCAAG+CGG | 0.720680 | 3_4:-73020558 | Msa0520490:CDS |
| GAGACAATGGAAGACTCCAG+GGG | 0.727840 | 3_4:+73020144 | None:intergenic |
| TGTCTGAGATGAACACCTTG+CGG | 0.733097 | 3_4:+73020469 | None:intergenic |
| TATGAATAGGGACATCGACG+AGG | 0.735291 | 3_4:-73021614 | Msa0520490:intron |
| TAGATGCAGTGATGAACTCG+AGG | 0.741103 | 3_4:-73022100 | Msa0520490:CDS |
| GGTGGAGATAGCCATCACCA+TGG | 0.745710 | 3_4:-73023274 | Msa0520490:CDS |
| GGTGACTTTGTAGAGTAACG+AGG | 0.754563 | 3_4:+73023211 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAAATAAAATACAAG+AGG | + | chr3_4:73020104-73020123 | None:intergenic | 10.0% |
| !!! | TAACATTTCAAATATTTTTT+GGG | - | chr3_4:73022867-73022886 | Msa0520490:CDS | 10.0% |
| !!! | ATGTATTCTTTTAATAAATT+AGG | - | chr3_4:73022904-73022923 | Msa0520490:CDS | 10.0% |
| !! | AAGATATAAACTAAATAACT+TGG | + | chr3_4:73020200-73020219 | None:intergenic | 15.0% |
| !!! | CTAACATTTCAAATATTTTT+TGG | - | chr3_4:73022866-73022885 | Msa0520490:CDS | 15.0% |
| !!! | CTTTTAATAAATTAGGTATT+TGG | - | chr3_4:73022911-73022930 | Msa0520490:CDS | 15.0% |
| !! | AAATGTAAATAAGATTAAGA+TGG | - | chr3_4:73022989-73023008 | Msa0520490:CDS | 15.0% |
| !! | AATGTAAATAAGATTAAGAT+GGG | - | chr3_4:73022990-73023009 | Msa0520490:CDS | 15.0% |
| !!! | ATTTCTAGTAATAATTCTGA+TGG | - | chr3_4:73020174-73020193 | Msa0520490:three_prime_UTR | 20.0% |
| !! | AAGAAAGTTGAATTTAGTAA+AGG | - | chr3_4:73020779-73020798 | Msa0520490:intron | 20.0% |
| !! | TAAACAACTTAATTAAGTGT+TGG | + | chr3_4:73021892-73021911 | None:intergenic | 20.0% |
| !!! | ATAATTTTGAAGGCATTAAT+AGG | + | chr3_4:73022556-73022575 | None:intergenic | 20.0% |
| !! | CTTGAAACTTAATAATGAAA+AGG | - | chr3_4:73022621-73022640 | Msa0520490:CDS | 20.0% |
| !! | GATTATTAAATTATGTATCC+AGG | - | chr3_4:73023367-73023386 | Msa0520490:exon | 20.0% |
| ! | TATATCTTTGTGATATGCAT+AGG | - | chr3_4:73020212-73020231 | Msa0520490:three_prime_UTR | 25.0% |
| ! | ATATCTTTGTGATATGCATA+GGG | - | chr3_4:73020213-73020232 | Msa0520490:three_prime_UTR | 25.0% |
| ! | GGTAATAATAATAAGCATCA+AGG | - | chr3_4:73020248-73020267 | Msa0520490:three_prime_UTR | 25.0% |
| ! | AATAATAATAAGCATCAAGG+TGG | - | chr3_4:73020251-73020270 | Msa0520490:three_prime_UTR | 25.0% |
| !! | ATCTTACAAGAGTTTTTCTT+GGG | + | chr3_4:73020505-73020524 | None:intergenic | 25.0% |
| ! | AAGTAACATTCTCTTCTAAA+AGG | + | chr3_4:73020586-73020605 | None:intergenic | 25.0% |
| ! | TTCTTGTATATGATTTCATC+AGG | + | chr3_4:73020764-73020783 | None:intergenic | 25.0% |
| !! | GAACTTTTTGTTGAAGAAAA+AGG | - | chr3_4:73021018-73021037 | Msa0520490:CDS | 25.0% |
| ! | AAAGAAAGAGGTTATTGATA+TGG | - | chr3_4:73021423-73021442 | Msa0520490:intron | 25.0% |
| ! | TAAAGAAATTACCAATGAGA+TGG | - | chr3_4:73021588-73021607 | Msa0520490:CDS | 25.0% |
| ! | TTATACACTTCTCTTTGTTA+AGG | - | chr3_4:73021856-73021875 | Msa0520490:intron | 25.0% |
| ! | TATACACTTCTCTTTGTTAA+GGG | - | chr3_4:73021857-73021876 | Msa0520490:intron | 25.0% |
| ! | AGAGAAGAGTAAATACAATT+AGG | + | chr3_4:73021926-73021945 | None:intergenic | 25.0% |
| ! | CACTGAATGAAAAAATAAAG+AGG | - | chr3_4:73022764-73022783 | Msa0520490:CDS | 25.0% |
| ! | AGCTAATTGTATAAGTAATC+TGG | - | chr3_4:73022789-73022808 | Msa0520490:CDS | 25.0% |
| ! | AATAAATTAGGTATTTGGAG+AGG | - | chr3_4:73022916-73022935 | Msa0520490:CDS | 25.0% |
| ! | ACAATGAACTTTCAAGAATT+TGG | - | chr3_4:73023029-73023048 | Msa0520490:CDS | 25.0% |
| ! | CAATGAACTTTCAAGAATTT+GGG | - | chr3_4:73023030-73023049 | Msa0520490:CDS | 25.0% |
| ! | AATGAACTTTCAAGAATTTG+GGG | - | chr3_4:73023031-73023050 | Msa0520490:CDS | 25.0% |
| ! | AATTCATGAATCATGATTGT+TGG | - | chr3_4:73023281-73023300 | Msa0520490:CDS | 25.0% |
| ! | ATTCATGAATCATGATTGTT+GGG | - | chr3_4:73023282-73023301 | Msa0520490:CDS | 25.0% |
| ! | GTTCTATATAGTGAAAGTAA+AGG | - | chr3_4:73023309-73023328 | Msa0520490:CDS | 25.0% |
| ATGAAAGAAAAGAGATCAAG+TGG | + | chr3_4:73020064-73020083 | None:intergenic | 30.0% | |
| ! | TCTTACAAGAGTTTTTCTTG+GGG | + | chr3_4:73020504-73020523 | None:intergenic | 30.0% |
| ! | GATCTTACAAGAGTTTTTCT+TGG | + | chr3_4:73020506-73020525 | None:intergenic | 30.0% |
| TGTTCACCAAATCTTGATTT+GGG | + | chr3_4:73020542-73020561 | None:intergenic | 30.0% | |
| TTGTTCACCAAATCTTGATT+TGG | + | chr3_4:73020543-73020562 | None:intergenic | 30.0% | |
| CTAAAAGGATTCCATCAATA+GGG | + | chr3_4:73020571-73020590 | None:intergenic | 30.0% | |
| TCTAAAAGGATTCCATCAAT+AGG | + | chr3_4:73020572-73020591 | None:intergenic | 30.0% | |
| ACTGTTCCAGGTTTATTATT+CGG | + | chr3_4:73020662-73020681 | None:intergenic | 30.0% | |
| TAACAGTTGAGGAACTAAAA+AGG | - | chr3_4:73020882-73020901 | Msa0520490:CDS | 30.0% | |
| CAAAAATGTTCCAATGAGAA+GGG | + | chr3_4:73021197-73021216 | None:intergenic | 30.0% | |
| ACAAAAATGTTCCAATGAGA+AGG | + | chr3_4:73021198-73021217 | None:intergenic | 30.0% | |
| ! | TTCTCATTGGAACATTTTTG+TGG | - | chr3_4:73021197-73021216 | Msa0520490:CDS | 30.0% |
| ! | TCTCATTGGAACATTTTTGT+GGG | - | chr3_4:73021198-73021217 | Msa0520490:CDS | 30.0% |
| ! | GACATTGTTGCTAAAGATTT+TGG | - | chr3_4:73021228-73021247 | Msa0520490:CDS | 30.0% |
| GATCAAAGAAAGATTTGACA+TGG | + | chr3_4:73021264-73021283 | None:intergenic | 30.0% | |
| TGTACTCCTGAAACTAAAAT+GGG | + | chr3_4:73021386-73021405 | None:intergenic | 30.0% | |
| TTGTACTCCTGAAACTAAAA+TGG | + | chr3_4:73021387-73021406 | None:intergenic | 30.0% | |
| !! | TTCATGGACTATGAAGATTT+TGG | - | chr3_4:73021480-73021499 | Msa0520490:intron | 30.0% |
| ATCTAGAGAATTAGAGATTG+TGG | + | chr3_4:73021533-73021552 | None:intergenic | 30.0% | |
| AACATTCCTGAAAACGTAAT+AGG | + | chr3_4:73021629-73021648 | None:intergenic | 30.0% | |
| TATATTCTTACTTGCAGCTA+GGG | + | chr3_4:73021660-73021679 | None:intergenic | 30.0% | |
| ATATATTCTTACTTGCAGCT+AGG | + | chr3_4:73021661-73021680 | None:intergenic | 30.0% | |
| ATTACTTGTAGAGTTGTTGA+TGG | - | chr3_4:73021688-73021707 | Msa0520490:intron | 30.0% | |
| TAAGCATTTGCAAGATTGTA+TGG | - | chr3_4:73021758-73021777 | Msa0520490:intron | 30.0% | |
| AAAATGCTCCCATTATGAAT+AGG | - | chr3_4:73021976-73021995 | Msa0520490:CDS | 30.0% | |
| AAATGCTCCCATTATGAATA+GGG | - | chr3_4:73021977-73021996 | Msa0520490:CDS | 30.0% | |
| TTACAGATTGAGATTCTGTT+TGG | - | chr3_4:73022170-73022189 | Msa0520490:CDS | 30.0% | |
| ACTGGAAAATACAGAGATTA+TGG | + | chr3_4:73022197-73022216 | None:intergenic | 30.0% | |
| CAATTAAACAAGCTAGTTAC+AGG | - | chr3_4:73022282-73022301 | Msa0520490:CDS | 30.0% | |
| ! | TAGCTGCAAGATAATTTTGA+AGG | + | chr3_4:73022566-73022585 | None:intergenic | 30.0% |
| CAAAATTATCTTGCAGCTAT+TGG | - | chr3_4:73022567-73022586 | Msa0520490:CDS | 30.0% | |
| !! | ATAATTGCTGATCGGTTTTA+TGG | + | chr3_4:73022671-73022690 | None:intergenic | 30.0% |
| CTTCTGTAATAATTGCTGAT+CGG | + | chr3_4:73022679-73022698 | None:intergenic | 30.0% | |
| TTATTACAGAAGCCCTAATA+TGG | - | chr3_4:73022687-73022706 | Msa0520490:CDS | 30.0% | |
| TATTACAGAAGCCCTAATAT+GGG | - | chr3_4:73022688-73022707 | Msa0520490:CDS | 30.0% | |
| ! | TTTGAAATGTTAGCCGAATA+TGG | + | chr3_4:73022859-73022878 | None:intergenic | 30.0% |
| CACTTAAGATAACTTGAATC+AGG | + | chr3_4:73023167-73023186 | None:intergenic | 30.0% | |
| GAAGTTTCATCTTAATGAGA+AGG | + | chr3_4:73023195-73023214 | None:intergenic | 30.0% | |
| ACCAGTTATTATATCTATGC+CGG | + | chr3_4:73023484-73023503 | None:intergenic | 30.0% | |
| AAAGAAAAGAGATCAAGTGG+AGG | + | chr3_4:73020061-73020080 | None:intergenic | 35.0% | |
| TCAACTCATGATCATGATCT+TGG | + | chr3_4:73020355-73020374 | None:intergenic | 35.0% | |
| ! | TAGGGATGAACCTTATTTCA+GGG | + | chr3_4:73020436-73020455 | None:intergenic | 35.0% |
| ! | GTAAGGTTTTCATTTGTAGC+AGG | + | chr3_4:73020482-73020501 | None:intergenic | 35.0% |
| TCTAAGCCCAAATCAAGATT+TGG | - | chr3_4:73020533-73020552 | Msa0520490:CDS | 35.0% | |
| ACAGTTCTATAAACTGTTCC+AGG | + | chr3_4:73020674-73020693 | None:intergenic | 35.0% | |
| AGTTGAGGAACTAAAAAGGA+CGG | - | chr3_4:73020886-73020905 | Msa0520490:CDS | 35.0% | |
| AACTAAAAAGGACGGAGATT+TGG | - | chr3_4:73020894-73020913 | Msa0520490:CDS | 35.0% | |
| !!! | AAGGTGCTTTATTTTGTCCA+TGG | - | chr3_4:73021037-73021056 | Msa0520490:intron | 35.0% |
| ! | AATGTATCCAGGTTTTCACT+TGG | - | chr3_4:73021068-73021087 | Msa0520490:intron | 35.0% |
| ! | TAAATTGGCCACGAAGATTT+TGG | - | chr3_4:73021147-73021166 | Msa0520490:CDS | 35.0% |
| ! | AGATTTTGGATGGTGTAACA+TGG | - | chr3_4:73021161-73021180 | Msa0520490:CDS | 35.0% |
| TTTCTTTGTGCTACCTTTAC+TGG | + | chr3_4:73021410-73021429 | None:intergenic | 35.0% | |
| TAAAGGTAGCACAAAGAAAG+AGG | - | chr3_4:73021411-73021430 | Msa0520490:intron | 35.0% | |
| AGCAAGAGAAAGTTTCTTCA+TGG | - | chr3_4:73021464-73021483 | Msa0520490:intron | 35.0% | |
| ATATTCTTACTTGCAGCTAG+GGG | + | chr3_4:73021659-73021678 | None:intergenic | 35.0% | |
| !! | TAGAGTTGTTGATGGTTGTA+AGG | - | chr3_4:73021696-73021715 | Msa0520490:intron | 35.0% |
| !! | AGAGTTGTTGATGGTTGTAA+GGG | - | chr3_4:73021697-73021716 | Msa0520490:intron | 35.0% |
| ! | CTTACTTGTGTTGATCTACT+AGG | - | chr3_4:73021734-73021753 | Msa0520490:intron | 35.0% |
| TCGATGTCCCTATTCATAAT+GGG | + | chr3_4:73021987-73022006 | None:intergenic | 35.0% | |
| CTTCCTTAATCAAGAACCTA+CGG | + | chr3_4:73022022-73022041 | None:intergenic | 35.0% | |
| GATTAAGGAAGAAGTTCCTT+TGG | - | chr3_4:73022031-73022050 | Msa0520490:CDS | 35.0% | |
| CAGAAAATCTTTAGCAGCTT+GGG | - | chr3_4:73022094-73022113 | Msa0520490:CDS | 35.0% | |
| ! | TCTCTGTATTTTCCAGTTGA+AGG | - | chr3_4:73022200-73022219 | Msa0520490:CDS | 35.0% |
| GTTCTTGATATACCTTCAAC+TGG | + | chr3_4:73022215-73022234 | None:intergenic | 35.0% | |
| CATTACAAACACGAAGATGA+TGG | + | chr3_4:73022445-73022464 | None:intergenic | 35.0% | |
| GTAATGCATCCATTTGATGT+TGG | - | chr3_4:73022459-73022478 | Msa0520490:CDS | 35.0% | |
| !! | ATGTTTTATAGATGGTGTCG+AGG | - | chr3_4:73022488-73022507 | Msa0520490:CDS | 35.0% |
| !! | ATGTGCTCCTTTTGTTTCTT+TGG | - | chr3_4:73023219-73023238 | Msa0520490:CDS | 35.0% |
| TGACAGACCAAAGAAACAAA+AGG | + | chr3_4:73023229-73023248 | None:intergenic | 35.0% | |
| TTTGGTCTGTCAAATACCAT+CGG | - | chr3_4:73023237-73023256 | Msa0520490:CDS | 35.0% | |
| !!! | TACCATCGGTTCATTTTGTT+TGG | - | chr3_4:73023251-73023270 | Msa0520490:CDS | 35.0% |
| AACCAAACAAAATGAACCGA+TGG | + | chr3_4:73023256-73023275 | None:intergenic | 35.0% | |
| CAATGTAAAATTCCGTCACT+CGG | - | chr3_4:73023426-73023445 | Msa0520490:intron | 35.0% | |
| TCCGGCATAGATATAATAAC+TGG | - | chr3_4:73023480-73023499 | Msa0520490:five_prime_UTR | 35.0% | |
| GATATGCATAGGGTTGTGAA+TGG | - | chr3_4:73020223-73020242 | Msa0520490:three_prime_UTR | 40.0% | |
| GATGGAGAAGAAAACAGAAG+TGG | - | chr3_4:73020286-73020305 | Msa0520490:three_prime_UTR | 40.0% | |
| GTGGTGGCAATTTCAAATGT+GGG | - | chr3_4:73020308-73020327 | Msa0520490:three_prime_UTR | 40.0% | |
| ! | AGGGATGAACCTTATTTCAG+GGG | + | chr3_4:73020435-73020454 | None:intergenic | 40.0% |
| ! | CTAGGGATGAACCTTATTTC+AGG | + | chr3_4:73020437-73020456 | None:intergenic | 40.0% |
| !! | GAGCTTTTGGGGGTTTATTT+GGG | + | chr3_4:73020460-73020479 | None:intergenic | 40.0% |
| ! | ATTTGTAGCAGGAGCTTTTG+GGG | + | chr3_4:73020471-73020490 | None:intergenic | 40.0% |
| ! | CATTTGTAGCAGGAGCTTTT+GGG | + | chr3_4:73020472-73020491 | None:intergenic | 40.0% |
| ! | TCATTTGTAGCAGGAGCTTT+TGG | + | chr3_4:73020473-73020492 | None:intergenic | 40.0% |
| ! | CAAGAGTTTTTCTTGGGGTA+AGG | + | chr3_4:73020499-73020518 | None:intergenic | 40.0% |
| GAACAACCTTACCCTATTGA+TGG | - | chr3_4:73020557-73020576 | Msa0520490:CDS | 40.0% | |
| AGGATTCCATCAATAGGGTA+AGG | + | chr3_4:73020566-73020585 | None:intergenic | 40.0% | |
| ! | GGTTTATTATTCGGTGAACG+TGG | + | chr3_4:73020653-73020672 | None:intergenic | 40.0% |
| CGTTCACCGAATAATAAACC+TGG | - | chr3_4:73020653-73020672 | Msa0520490:CDS | 40.0% | |
| GCGTAAGAGACTAACAACTA+AGG | - | chr3_4:73020805-73020824 | Msa0520490:intron | 40.0% | |
| GTTTGTGTTTGTGTGCATCA+CGG | - | chr3_4:73020841-73020860 | Msa0520490:CDS | 40.0% | |
| TTTGTGTTTGTGTGCATCAC+GGG | - | chr3_4:73020842-73020861 | Msa0520490:CDS | 40.0% | |
| !! | GTTGGCTAGTTTAACAGTTG+AGG | - | chr3_4:73020871-73020890 | Msa0520490:CDS | 40.0% |
| !! | CTTGTGATGGTGACATTTTG+TGG | - | chr3_4:73020944-73020963 | Msa0520490:CDS | 40.0% |
| GTGGCATGTTAGTTACCAAA+TGG | - | chr3_4:73020963-73020982 | Msa0520490:CDS | 40.0% | |
| GGATACATTTCTTCAGTCCA+TGG | + | chr3_4:73021057-73021076 | None:intergenic | 40.0% | |
| TGGACTGAAGAAATGTATCC+AGG | - | chr3_4:73021057-73021076 | Msa0520490:intron | 40.0% | |
| ! | TGGGTGCTTTTAATCAATCG+TGG | - | chr3_4:73021112-73021131 | Msa0520490:intron | 40.0% |
| TGGAGTCGAACGATCTAAAT+TGG | - | chr3_4:73021132-73021151 | Msa0520490:CDS | 40.0% | |
| TACACCATCCAAAATCTTCG+TGG | + | chr3_4:73021158-73021177 | None:intergenic | 40.0% | |
| ! | ACTCTTGTTTCCCTTCTCAT+TGG | - | chr3_4:73021184-73021203 | Msa0520490:CDS | 40.0% |
| GAGTCTGCAGAACATATTGA+TGG | + | chr3_4:73021306-73021325 | None:intergenic | 40.0% | |
| !!! | GCACTTCCCATTTTAGTTTC+AGG | - | chr3_4:73021377-73021396 | Msa0520490:CDS | 40.0% |
| ! | TTCAGGAGTACAACCAGTAA+AGG | - | chr3_4:73021394-73021413 | Msa0520490:intron | 40.0% |
| GTCGATGTCCCTATTCATAA+TGG | + | chr3_4:73021988-73022007 | None:intergenic | 40.0% | |
| ACTCCGTAGGTTCTTGATTA+AGG | - | chr3_4:73022016-73022035 | Msa0520490:CDS | 40.0% | |
| ! | CCAAGCTGCTAAAGATTTTC+TGG | + | chr3_4:73022096-73022115 | None:intergenic | 40.0% |
| CCAGAAAATCTTTAGCAGCT+TGG | - | chr3_4:73022093-73022112 | Msa0520490:CDS | 40.0% | |
| AAAATCTTTAGCAGCTTGGG+TGG | - | chr3_4:73022097-73022116 | Msa0520490:CDS | 40.0% | |
| CTTAAGCGACACTAAAACAG+CGG | - | chr3_4:73022254-73022273 | Msa0520490:CDS | 40.0% | |
| TAGAAGAAGCCACACTACTA+TGG | + | chr3_4:73022325-73022344 | None:intergenic | 40.0% | |
| AGTAGTGTGGCTTCTTCTAA+TGG | - | chr3_4:73022326-73022345 | Msa0520490:CDS | 40.0% | |
| ! | GGCGATCGATGTTTTATAGA+TGG | - | chr3_4:73022480-73022499 | Msa0520490:CDS | 40.0% |
| TTTATGGCTAGGACAGAGTT+TGG | + | chr3_4:73022655-73022674 | None:intergenic | 40.0% | |
| CTACACTGTCACCCATATTA+GGG | + | chr3_4:73022702-73022721 | None:intergenic | 40.0% | |
| TCTACACTGTCACCCATATT+AGG | + | chr3_4:73022703-73022722 | None:intergenic | 40.0% | |
| AAACTAGGATGCCAGTATTG+TGG | + | chr3_4:73022945-73022964 | None:intergenic | 40.0% | |
| TTCACTGCCAAACTGAAACT+AGG | + | chr3_4:73022960-73022979 | None:intergenic | 40.0% | |
| TAGTTTCAGTTTGGCAGTGA+AGG | - | chr3_4:73022959-73022978 | Msa0520490:CDS | 40.0% | |
| AGATACTACCTTATTCCGCA+AGG | - | chr3_4:73023119-73023138 | Msa0520490:CDS | 40.0% | |
| TGAATCATGATTGTTGGGAG+TGG | - | chr3_4:73023287-73023306 | Msa0520490:CDS | 40.0% | |
| GTGAAAGTAAAGGCCTTAAC+AGG | - | chr3_4:73023319-73023338 | Msa0520490:CDS | 40.0% | |
| GTTGCTAACATTGCCTGTTA+AGG | + | chr3_4:73023335-73023354 | None:intergenic | 40.0% | |
| !! | CGAGTGACGGAATTTTACAT+TGG | + | chr3_4:73023428-73023447 | None:intergenic | 40.0% |
| TATATCTATGCCGGAGACAA+TGG | + | chr3_4:73023475-73023494 | None:intergenic | 40.0% | |
| TGCATAGGGTTGTGAATGGA+TGG | - | chr3_4:73020227-73020246 | Msa0520490:three_prime_UTR | 45.0% | |
| GGAGAAGAAAACAGAAGTGG+TGG | - | chr3_4:73020289-73020308 | Msa0520490:three_prime_UTR | 45.0% | |
| GAAGAAAACAGAAGTGGTGG+TGG | - | chr3_4:73020292-73020311 | Msa0520490:three_prime_UTR | 45.0% | |
| ! | GGTGGTGGCAATTTCAAATG+TGG | - | chr3_4:73020307-73020326 | Msa0520490:three_prime_UTR | 45.0% |
| GTGGCAATTTCAAATGTGGG+TGG | - | chr3_4:73020311-73020330 | Msa0520490:three_prime_UTR | 45.0% | |
| CATGATCATGATCTTGGCCA+TGG | + | chr3_4:73020349-73020368 | None:intergenic | 45.0% | |
| GGTGACTTTGTAGAGTAACG+AGG | + | chr3_4:73020395-73020414 | None:intergenic | 45.0% | |
| ! | TCAGGGGAAGCACAGTTTAA+AGG | + | chr3_4:73020419-73020438 | None:intergenic | 45.0% |
| ACTGTGCTTCCCCTGAAATA+AGG | - | chr3_4:73020423-73020442 | Msa0520490:exon | 45.0% | |
| TTGGGGGTTTATTTGGGCTA+GGG | + | chr3_4:73020454-73020473 | None:intergenic | 45.0% | |
| TTTGGGGGTTTATTTGGGCT+AGG | + | chr3_4:73020455-73020474 | None:intergenic | 45.0% | |
| !! | GGAGCTTTTGGGGGTTTATT+TGG | + | chr3_4:73020461-73020480 | None:intergenic | 45.0% |
| ! | TTTGTAGCAGGAGCTTTTGG+GGG | + | chr3_4:73020470-73020489 | None:intergenic | 45.0% |
| GGTGAACGTGGTGCTTTATA+TGG | + | chr3_4:73020641-73020660 | None:intergenic | 45.0% | |
| CACTCCTAGAACACCTTTGA+TGG | - | chr3_4:73020712-73020731 | Msa0520490:intron | 45.0% | |
| !! | GATGCCATCAAAGGTGTTCT+AGG | + | chr3_4:73020719-73020738 | None:intergenic | 45.0% |
| ! | AAGGACGGAGATTTGGAGTT+TGG | - | chr3_4:73020901-73020920 | Msa0520490:CDS | 45.0% |
| ! | AGGACGGAGATTTGGAGTTT+GGG | - | chr3_4:73020902-73020921 | Msa0520490:CDS | 45.0% |
| ! | AGATTTGGAGTTTGGGGCTT+TGG | - | chr3_4:73020909-73020928 | Msa0520490:CDS | 45.0% |
| GACAATGTGCGTGAACCATT+TGG | + | chr3_4:73020981-73021000 | None:intergenic | 45.0% | |
| AAGCGATCCAAGTGAAAACC+TGG | + | chr3_4:73021078-73021097 | None:intergenic | 45.0% | |
| ! | GGTTTTCACTTGGATCGCTT+TGG | - | chr3_4:73021078-73021097 | Msa0520490:intron | 45.0% |
| !! | TCGCTTTGGTTCTACTCACA+TGG | - | chr3_4:73021092-73021111 | Msa0520490:intron | 45.0% |
| !! | CGCTTTGGTTCTACTCACAT+GGG | - | chr3_4:73021093-73021112 | Msa0520490:intron | 45.0% |
| ! | TTGGCCACGAAGATTTTGGA+TGG | - | chr3_4:73021151-73021170 | Msa0520490:CDS | 45.0% |
| TATGTTCTGCAGACTCTCTC+TGG | - | chr3_4:73021310-73021329 | Msa0520490:CDS | 45.0% | |
| ATGTTCTGCAGACTCTCTCT+GGG | - | chr3_4:73021311-73021330 | Msa0520490:CDS | 45.0% | |
| TTCTCAGCCTCTTCCATTAG+TGG | + | chr3_4:73021340-73021359 | None:intergenic | 45.0% | |
| ATGGAAGAGGCTGAGAAAGT+CGG | - | chr3_4:73021343-73021362 | Msa0520490:CDS | 45.0% | |
| TAGATGCAGTGATGAACTCG+AGG | - | chr3_4:73021503-73021522 | Msa0520490:intron | 45.0% | |
| AGCAGTTGCTTCCATCTCAT+TGG | + | chr3_4:73021602-73021621 | None:intergenic | 45.0% | |
| ! | CTGCTGCCTATTACGTTTTC+AGG | - | chr3_4:73021620-73021639 | Msa0520490:intron | 45.0% |
| ! | GATGGTTGTAAGGGCATGTT+TGG | - | chr3_4:73021706-73021725 | Msa0520490:intron | 45.0% |
| TATGAATAGGGACATCGACG+AGG | - | chr3_4:73021989-73022008 | Msa0520490:CDS | 45.0% | |
| TCCTTTGGTATTTCCCCTAC+TGG | - | chr3_4:73022046-73022065 | Msa0520490:CDS | 45.0% | |
| !!! | CGCTGTTTTAGTGTCGCTTA+AGG | + | chr3_4:73022256-73022275 | None:intergenic | 45.0% |
| AGTTACAGGAGTCCTAGTAG+TGG | - | chr3_4:73022296-73022315 | Msa0520490:CDS | 45.0% | |
| CTACTATGGTCACCACTACT+AGG | + | chr3_4:73022311-73022330 | None:intergenic | 45.0% | |
| TAGTGGTGACCATAGTAGTG+TGG | - | chr3_4:73022313-73022332 | Msa0520490:CDS | 45.0% | |
| GTACTTGCGGCTTTCATGTT+TGG | - | chr3_4:73022393-73022412 | Msa0520490:CDS | 45.0% | |
| CATCGATCGCCAACATCAAA+TGG | + | chr3_4:73022471-73022490 | None:intergenic | 45.0% | |
| !! | TGCTGATCGGTTTTATGGCT+AGG | + | chr3_4:73022666-73022685 | None:intergenic | 45.0% |
| ACGACGTCAGCAGAGAAAAT+CGG | - | chr3_4:73022739-73022758 | Msa0520490:CDS | 45.0% | |
| TATGGCCAACAGTCGAGTTA+GGG | + | chr3_4:73022841-73022860 | None:intergenic | 45.0% | |
| ATATGGCCAACAGTCGAGTT+AGG | + | chr3_4:73022842-73022861 | None:intergenic | 45.0% | |
| ACTCGACTGTTGGCCATATT+CGG | - | chr3_4:73022843-73022862 | Msa0520490:CDS | 45.0% | |
| TGGAGAGGAATCCACAATAC+TGG | - | chr3_4:73022931-73022950 | Msa0520490:CDS | 45.0% | |
| CTGGCATCCTAGTTTCAGTT+TGG | - | chr3_4:73022950-73022969 | Msa0520490:CDS | 45.0% | |
| AATTTGGGGAGAAGACCAAG+CGG | - | chr3_4:73023045-73023064 | Msa0520490:CDS | 45.0% | |
| CACTAATTCACTTCTCCGCT+TGG | + | chr3_4:73023063-73023082 | None:intergenic | 45.0% | |
| GCGGAGAAGTGAATTAGTGA+TGG | - | chr3_4:73023064-73023083 | Msa0520490:CDS | 45.0% | |
| GATGAACACCTTGCGGAATA+AGG | + | chr3_4:73023130-73023149 | None:intergenic | 45.0% | |
| ! | TGTCTGAGATGAACACCTTG+CGG | + | chr3_4:73023137-73023156 | None:intergenic | 45.0% |
| AGGTGTTCATCTCAGACACA+TGG | - | chr3_4:73023139-73023158 | Msa0520490:CDS | 45.0% | |
| TACGAAAGACTTGAGAGTCC+TGG | + | chr3_4:73023388-73023407 | None:intergenic | 45.0% | |
| CATTGGATCCACTTCAACGT+CGG | + | chr3_4:73023411-73023430 | None:intergenic | 45.0% | |
| AGGTGGTGAAGTGAGCATGA+TGG | - | chr3_4:73020268-73020287 | Msa0520490:three_prime_UTR | 50.0% | |
| CATGATCTTGGCCATGGTGA+TGG | + | chr3_4:73020343-73020362 | None:intergenic | 50.0% | |
| ! | GGGGAAGCACAGTTTAAAGG+TGG | + | chr3_4:73020416-73020435 | None:intergenic | 50.0% |
| ! | ACACCTTTGATGGCATCTCC+AGG | - | chr3_4:73020722-73020741 | Msa0520490:intron | 50.0% |
| ! | GGACGGAGATTTGGAGTTTG+GGG | - | chr3_4:73020903-73020922 | Msa0520490:CDS | 50.0% |
| ! | TTTGGAGTTTGGGGCTTTGG+AGG | - | chr3_4:73020912-73020931 | Msa0520490:CDS | 50.0% |
| GAGGTGGTGTATGCTTGTGA+TGG | - | chr3_4:73020931-73020950 | Msa0520490:CDS | 50.0% | |
| TCAGCCTCTTCCATTAGTGG+AGG | + | chr3_4:73021337-73021356 | None:intergenic | 50.0% | |
| GCCAGTAGGGGAAATACCAA+AGG | + | chr3_4:73022050-73022069 | None:intergenic | 50.0% | |
| ! | TGTTTCTGCCTGTGCCAGTA+GGG | + | chr3_4:73022063-73022082 | None:intergenic | 50.0% |
| TACTGGCACAGGCAGAAACA+GGG | - | chr3_4:73022063-73022082 | Msa0520490:CDS | 50.0% | |
| CTTTAGCAGCTTGGGTGGTA+AGG | - | chr3_4:73022102-73022121 | Msa0520490:CDS | 50.0% | |
| CAAGTACTAGCTGCGATGAG+AGG | + | chr3_4:73022380-73022399 | None:intergenic | 50.0% | |
| CTCATCGCAGCTAGTACTTG+CGG | - | chr3_4:73022380-73022399 | Msa0520490:CDS | 50.0% | |
| ATGGCCAACAGTCGAGTTAG+GGG | + | chr3_4:73022840-73022859 | None:intergenic | 50.0% | |
| ! | CTTTCGTACCGACGTTGAAG+TGG | - | chr3_4:73023400-73023419 | Msa0520490:five_prime_UTR | 50.0% |
| GGTGAAGTTCAACCGAGTGA+CGG | + | chr3_4:73023441-73023460 | None:intergenic | 50.0% | |
| GAGACAATGGAAGACTCCAG+GGG | + | chr3_4:73023462-73023481 | None:intergenic | 50.0% | |
| GGAGACAATGGAAGACTCCA+GGG | + | chr3_4:73023463-73023482 | None:intergenic | 50.0% | |
| CTGGAGTCTTCCATTGTCTC+CGG | - | chr3_4:73023462-73023481 | Msa0520490:five_prime_UTR | 50.0% | |
| GGTGGAGATAGCCATCACCA+TGG | - | chr3_4:73020329-73020348 | Msa0520490:three_prime_UTR | 55.0% | |
| GGACCTGGAGATGCCATCAA+AGG | + | chr3_4:73020728-73020747 | None:intergenic | 55.0% | |
| TCATCAGGATCCTCACCAGC+TGG | + | chr3_4:73020749-73020768 | None:intergenic | 55.0% | |
| ! | GTGCATCACGGGTAGCTTGT+TGG | - | chr3_4:73020853-73020872 | Msa0520490:CDS | 55.0% |
| TCTCTCTGGGCCTCCACTAA+TGG | - | chr3_4:73021324-73021343 | Msa0520490:CDS | 55.0% | |
| TGGGCCTCCACTAATGGAAG+AGG | - | chr3_4:73021330-73021349 | Msa0520490:CDS | 55.0% | |
| GAAGAGGCTGAGAAAGTCGG+CGG | - | chr3_4:73021346-73021365 | Msa0520490:CDS | 55.0% | |
| TCGACGAGGATGAACTCCGT+AGG | - | chr3_4:73022003-73022022 | Msa0520490:CDS | 55.0% | |
| GGTATTTCCCCTACTGGCAC+AGG | - | chr3_4:73022052-73022071 | Msa0520490:CDS | 55.0% | |
| GTTTCTGCCTGTGCCAGTAG+GGG | + | chr3_4:73022062-73022081 | None:intergenic | 55.0% | |
| !! | CTGTTTCTGCCTGTGCCAGT+AGG | + | chr3_4:73022064-73022083 | None:intergenic | 55.0% |
| CTACTGGCACAGGCAGAAAC+AGG | - | chr3_4:73022062-73022081 | Msa0520490:CDS | 55.0% | |
| CTCACCCCTAACTCGACTGT+TGG | - | chr3_4:73022833-73022852 | Msa0520490:CDS | 55.0% | |
| ACTCGGTTGAACTTCACCCC+TGG | - | chr3_4:73023443-73023462 | Msa0520490:intron | 55.0% | |
| CGGAGACAATGGAAGACTCC+AGG | + | chr3_4:73023464-73023483 | None:intergenic | 55.0% | |
| ATGGCATCTCCAGGTCCAGC+TGG | - | chr3_4:73020731-73020750 | Msa0520490:intron | 60.0% | |
| ATCTCCAGGTCCAGCTGGTG+AGG | - | chr3_4:73020736-73020755 | Msa0520490:intron | 60.0% | |
| !! | GGAGTTTGGGGCTTTGGAGG+TGG | - | chr3_4:73020915-73020934 | Msa0520490:CDS | 60.0% |
| GGATCCTCACCAGCTGGACC+TGG | + | chr3_4:73020743-73020762 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 73020055 | 73023570 | 73020055 | ID=Msa0520490;Name=Msa0520490 |
| chr3_4 | mRNA | 73020055 | 73023570 | 73020055 | ID=Msa0520490-mRNA-1;Parent=Msa0520490;Name=Msa0520490-mRNA-1;_AED=0.05;_eAED=0.05;_QI=166|1|1|1|0.8|0.66|6|383|768 |
| chr3_4 | exon | 73020055 | 73020699 | 73020055 | ID=Msa0520490-mRNA-1:exon:20335;Parent=Msa0520490-mRNA-1 |
| chr3_4 | exon | 73020840 | 73021042 | 73020840 | ID=Msa0520490-mRNA-1:exon:20334;Parent=Msa0520490-mRNA-1 |
| chr3_4 | exon | 73021116 | 73021409 | 73021116 | ID=Msa0520490-mRNA-1:exon:20333;Parent=Msa0520490-mRNA-1 |
| chr3_4 | exon | 73021507 | 73021627 | 73021507 | ID=Msa0520490-mRNA-1:exon:20332;Parent=Msa0520490-mRNA-1 |
| chr3_4 | exon | 73021957 | 73023423 | 73021957 | ID=Msa0520490-mRNA-1:exon:20331;Parent=Msa0520490-mRNA-1 |
| chr3_4 | exon | 73023445 | 73023570 | 73023445 | ID=Msa0520490-mRNA-1:exon:20330;Parent=Msa0520490-mRNA-1 |
| chr3_4 | five_prime_UTR | 73023445 | 73023570 | 73023445 | ID=Msa0520490-mRNA-1:five_prime_utr;Parent=Msa0520490-mRNA-1 |
| chr3_4 | five_prime_UTR | 73023384 | 73023423 | 73023384 | ID=Msa0520490-mRNA-1:five_prime_utr;Parent=Msa0520490-mRNA-1 |
| chr3_4 | CDS | 73021957 | 73023383 | 73021957 | ID=Msa0520490-mRNA-1:cds;Parent=Msa0520490-mRNA-1 |
| chr3_4 | CDS | 73021507 | 73021627 | 73021507 | ID=Msa0520490-mRNA-1:cds;Parent=Msa0520490-mRNA-1 |
| chr3_4 | CDS | 73021116 | 73021409 | 73021116 | ID=Msa0520490-mRNA-1:cds;Parent=Msa0520490-mRNA-1 |
| chr3_4 | CDS | 73020840 | 73021042 | 73020840 | ID=Msa0520490-mRNA-1:cds;Parent=Msa0520490-mRNA-1 |
| chr3_4 | CDS | 73020438 | 73020699 | 73020438 | ID=Msa0520490-mRNA-1:cds;Parent=Msa0520490-mRNA-1 |
| chr3_4 | three_prime_UTR | 73020055 | 73020437 | 73020055 | ID=Msa0520490-mRNA-1:three_prime_utr;Parent=Msa0520490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
