AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0382350

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382350 MtrunA17_Chr3g0137101 98.450 645 10 0 1 645 1 645 0.0 1317
Msa0382350 MtrunA17_Chr1g0149841 48.217 589 194 17 6 577 3 497 1.51e-150 444
Msa0382350 MtrunA17_Chr2g0304841 39.628 699 331 17 6 642 16 685 8.39e-135 410
Msa0382350 MtrunA17_Chr1g0149851 52.691 446 150 14 6 413 3 425 1.71e-125 382
Msa0382350 MtrunA17_Chr1g0149851 32.836 201 82 11 434 620 365 526 3.17e-11 66.2
Msa0382350 MtrunA17_Chr7g0275891 56.863 357 103 7 5 338 2 330 5.74e-115 348
Msa0382350 MtrunA17_Chr2g0294911 48.747 359 149 7 6 357 27 357 4.57e-100 318
Msa0382350 MtrunA17_Chr4g0067981 57.934 271 82 3 6 263 29 280 2.73e-98 315
Msa0382350 MtrunA17_Chr1g0161431 55.290 293 119 3 4 286 7 297 8.12e-98 312
Msa0382350 MtrunA17_Chr7g0275401 54.167 312 111 5 6 315 3 284 1.06e-96 298
Msa0382350 MtrunA17_Chr4g0074411 41.483 499 260 11 2 489 12 489 1.12e-96 309
Msa0382350 MtrunA17_Chr4g0074401 51.064 329 145 4 8 328 17 337 1.79e-92 298
Msa0382350 MtrunA17_Chr3g0123131 53.289 304 115 5 8 310 13 290 3.24e-91 293
Msa0382350 MtrunA17_Chr8g0376881 56.343 268 95 4 6 265 23 276 5.87e-89 286
Msa0382350 MtrunA17_Chr3g0134461 59.677 248 43 3 1 247 1 192 2.24e-78 247
Msa0382350 MtrunA17_Chr1g0149831 65.672 201 60 3 67 266 1 193 3.68e-76 243
Msa0382350 MtrunA17_Chr3g0134481 83.459 133 22 0 1 133 1 133 3.85e-69 223
Msa0382350 MtrunA17_Chr3g0134481 73.585 53 14 0 197 249 131 183 1.36e-20 90.1
Msa0382350 MtrunA17_Chr4g0074421 56.923 195 75 3 58 252 2 187 7.41e-62 204
Msa0382350 MtrunA17_Chr4g0009851 41.700 247 112 4 8 254 11 225 3.77e-52 182
Msa0382350 MtrunA17_Chr4g0009901 39.516 248 118 3 8 255 10 225 1.29e-47 168
Msa0382350 MtrunA17_Chr4g0009981 40.099 202 90 3 53 254 2 172 8.16e-39 144
Msa0382350 MtrunA17_Chr6g0471041 36.078 255 129 5 1 254 7 228 4.03e-38 146
Msa0382350 MtrunA17_Chr8g0391911 34.231 260 151 5 5 257 6 252 1.53e-33 129
Msa0382350 MtrunA17_Chr8g0350761 29.297 256 161 6 11 250 20 271 1.45e-25 110
Msa0382350 MtrunA17_Chr6g0473731 34.706 170 84 3 88 256 10 153 6.78e-24 105
Msa0382350 MtrunA17_Chr3g0127941 31.677 161 98 3 12 161 56 215 4.72e-23 104
Msa0382350 MtrunA17_Chr4g0031961 46.667 105 53 1 164 265 94 198 3.60e-22 97.8
Msa0382350 MtrunA17_Chr6g0469321 66.667 75 24 1 214 287 70 144 5.99e-22 93.6
Msa0382350 MtrunA17_Chr4g0011071 32.934 167 81 3 58 224 39 174 7.85e-22 93.2
Msa0382350 MtrunA17_Chr7g0276361 32.039 206 115 5 1 198 1 189 1.56e-21 99.0
Msa0382350 MtrunA17_Chr6g0456631 33.548 155 96 4 5 157 6 155 1.63e-21 92.0
Msa0382350 MtrunA17_Chr1g0181811 37.705 122 73 2 12 130 85 206 1.74e-21 99.4
Msa0382350 MtrunA17_Chr8g0383961 36.923 130 82 0 1 130 7 136 1.82e-21 94.7
Msa0382350 MtrunA17_Chr4g0030271 39.344 122 71 1 12 130 89 210 2.13e-21 99.4
Msa0382350 MtrunA17_Chr7g0255711 56.000 75 32 1 186 259 78 152 5.09e-21 94.0
Msa0382350 MtrunA17_Chr8g0345901 34.868 152 88 2 14 162 38 181 7.89e-21 97.1
Msa0382350 MtrunA17_Chr3g0091641 34.677 124 78 1 12 132 24 147 1.74e-19 92.4
Msa0382350 MtrunA17_Chr4g0009991 36.486 148 62 2 100 247 1 116 2.05e-19 84.7
Msa0382350 MtrunA17_Chr4g0061021 33.582 134 84 2 4 132 23 156 6.30e-18 87.8
Msa0382350 MtrunA17_Chr2g0324891 45.455 88 48 0 178 265 141 228 7.98e-18 86.3
Msa0382350 MtrunA17_Chr4g0040481 50.685 73 36 0 193 265 153 225 8.50e-18 86.3
Msa0382350 MtrunA17_Chr5g0400241 56.061 66 29 0 191 256 304 369 9.88e-18 87.0
Msa0382350 MtrunA17_Chr5g0400241 37.097 124 74 2 8 130 14 134 1.78e-13 73.6
Msa0382350 MtrunA17_Chr4g0054981 60.656 61 24 0 196 256 308 368 3.13e-17 85.5
Msa0382350 MtrunA17_Chr4g0054981 33.065 124 79 2 8 130 14 134 5.36e-12 68.9
Msa0382350 MtrunA17_Chr4g0010001 39.506 81 48 1 8 88 10 89 5.64e-14 67.8
Msa0382350 MtrunA17_Chr5g0402631 39.200 125 64 5 197 318 213 328 1.04e-13 73.2
Msa0382350 MtrunA17_Chr1g0198601 45.679 81 42 2 191 269 204 284 1.46e-13 72.8
Msa0382350 MtrunA17_Chr5g0423031 38.000 100 56 3 8 106 10 104 1.64e-13 69.3
Msa0382350 MtrunA17_Chr7g0274471 62.500 56 20 1 196 250 216 271 3.46e-13 72.0
Msa0382350 MtrunA17_Chr1g0190301 56.897 58 24 1 194 250 171 228 8.91e-13 70.5
Msa0382350 MtrunA17_Chr5g0422621 40.230 87 50 2 185 270 186 271 1.35e-12 69.7
Msa0382350 MtrunA17_Chr4g0045361 38.318 107 50 3 197 298 273 368 1.39e-12 70.1
Msa0382350 MtrunA17_Chr7g0261911 53.968 63 28 1 194 255 258 320 2.38e-12 69.7
Msa0382350 MtrunA17_Chr3g0134471 50.000 66 9 1 246 311 4 45 7.29e-12 60.8
Msa0382350 MtrunA17_Chr5g0417521 50.847 59 28 1 194 251 11 69 1.42e-11 66.6
Msa0382350 MtrunA17_Chr8g0352871 28.571 161 88 3 14 147 11 171 3.26e-11 62.8
Msa0382350 MtrunA17_Chr4g0062921 48.387 62 31 1 197 257 234 295 3.79e-11 65.9
Msa0382350 MtrunA17_Chr6g0461641 49.153 59 29 1 194 251 38 96 6.98e-11 64.7
Msa0382350 MtrunA17_Chr2g0321461 49.153 59 29 1 194 251 41 99 7.10e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0382350 AT2G25180.1 52.752 436 155 13 6 419 11 417 5.20e-128 390
Msa0382350 AT4G31920.1 53.117 369 109 9 6 355 11 334 2.88e-109 340
Msa0382350 AT3G16857.1 55.674 282 93 5 8 266 33 305 9.87e-95 306
Msa0382350 AT3G16857.2 55.674 282 93 5 8 266 33 305 2.56e-94 305
Msa0382350 AT5G58080.1 49.319 367 145 9 2 349 8 352 4.01e-92 298
Msa0382350 AT2G01760.1 56.538 260 110 3 6 262 5 264 3.69e-86 275
Msa0382350 AT1G67710.1 57.769 251 97 4 9 256 8 252 7.17e-82 268
Msa0382350 AT2G01760.2 51.042 288 110 4 6 262 5 292 6.28e-80 259
Msa0382350 AT3G16857.3 54.733 243 78 5 47 266 2 235 2.77e-75 253
Msa0382350 AT2G01760.3 54.774 199 87 3 67 262 1 199 2.21e-56 194
Msa0382350 AT1G67710.2 57.513 193 73 4 67 256 1 187 3.21e-55 195
Msa0382350 AT5G49240.1 39.167 240 141 2 8 247 38 272 1.64e-51 180
Msa0382350 AT3G62670.1 37.091 275 144 6 2 267 31 285 4.72e-42 158
Msa0382350 AT1G67710.3 52.601 173 73 4 87 256 12 178 5.23e-41 155
Msa0382350 AT1G49190.1 35.547 256 150 5 7 255 29 276 7.05e-40 151
Msa0382350 AT5G07210.2 29.683 347 197 10 10 328 14 341 1.67e-34 139
Msa0382350 AT5G07210.1 29.014 355 197 11 10 328 14 349 4.48e-32 132
Msa0382350 AT2G27070.1 30.576 278 154 8 10 256 14 283 3.97e-28 119
Msa0382350 AT2G46790.3 36.082 194 99 6 12 185 37 225 1.91e-25 110
Msa0382350 AT2G46790.1 36.082 194 99 6 12 185 37 225 2.55e-25 110
Msa0382350 AT1G49190.2 39.200 125 76 0 7 131 29 153 3.99e-25 110
Msa0382350 AT5G24470.1 35.294 170 94 5 6 168 42 202 1.33e-23 105
Msa0382350 AT5G59570.2 55.172 87 36 2 180 263 120 206 4.22e-23 100
Msa0382350 AT5G59570.1 55.172 87 36 2 180 263 120 206 4.22e-23 100
Msa0382350 AT3G46640.2 52.381 84 40 0 182 265 128 211 9.99e-23 100
Msa0382350 AT3G46640.1 52.381 84 40 0 182 265 128 211 9.99e-23 100
Msa0382350 AT3G46640.3 53.086 81 38 0 182 262 128 208 1.44e-22 99.8
Msa0382350 AT1G68210.1 26.937 271 171 4 12 257 13 281 5.10e-22 101
Msa0382350 AT5G60100.7 37.795 127 75 2 8 130 59 185 1.29e-21 98.2
Msa0382350 AT5G60100.6 37.795 127 75 2 8 130 59 185 1.29e-21 98.2
Msa0382350 AT5G60100.4 37.795 127 75 2 8 130 59 185 1.29e-21 98.2
Msa0382350 AT5G60100.5 37.795 127 75 2 8 130 59 185 1.79e-21 98.6
Msa0382350 AT5G60100.3 37.795 127 75 2 8 130 59 185 1.79e-21 98.6
Msa0382350 AT5G60100.1 37.795 127 75 2 8 130 59 185 1.79e-21 98.6
Msa0382350 AT5G60100.2 37.795 127 75 2 8 130 59 185 4.19e-21 97.8
Msa0382350 AT2G40970.1 65.000 60 21 0 197 256 104 163 8.87e-21 92.8
Msa0382350 AT5G05090.1 65.000 60 21 0 197 256 80 139 1.18e-20 92.8
Msa0382350 AT3G10760.1 65.000 60 21 0 197 256 104 163 1.21e-20 94.0
Msa0382350 AT5G02810.1 38.525 122 72 1 12 130 78 199 1.49e-20 96.7
Msa0382350 AT5G44190.2 59.155 71 29 0 196 266 145 215 3.65e-20 93.2
Msa0382350 AT5G44190.1 59.155 71 29 0 196 266 145 215 4.68e-20 93.2
Msa0382350 AT5G61380.1 34.677 124 78 1 12 132 19 142 6.44e-19 91.3
Msa0382350 AT2G20570.1 43.878 98 51 1 159 256 118 211 2.20e-17 85.5
Msa0382350 AT4G18020.8 41.748 103 53 1 161 256 252 354 3.10e-16 82.4
Msa0382350 AT4G18020.8 34.559 136 80 3 6 134 12 145 3.16e-13 72.8
Msa0382350 AT4G18020.11 41.748 103 53 1 161 256 252 354 3.10e-16 82.4
Msa0382350 AT4G18020.11 34.559 136 80 3 6 134 12 145 3.16e-13 72.8
Msa0382350 AT4G18020.4 41.748 103 53 1 161 256 252 354 3.10e-16 82.4
Msa0382350 AT4G18020.4 34.559 136 80 3 6 134 12 145 3.16e-13 72.8
Msa0382350 AT4G18020.5 41.748 103 53 1 161 256 252 354 3.10e-16 82.4
Msa0382350 AT4G18020.5 34.559 136 80 3 6 134 12 145 3.16e-13 72.8
Msa0382350 AT4G18020.10 41.748 103 53 1 161 256 252 354 3.10e-16 82.4
Msa0382350 AT4G18020.10 34.559 136 80 3 6 134 12 145 3.16e-13 72.8
Msa0382350 AT4G18020.7 41.748 103 53 1 161 256 252 354 3.10e-16 82.4
Msa0382350 AT4G18020.7 34.559 136 80 3 6 134 12 145 3.16e-13 72.8
Msa0382350 AT4G18020.3 41.748 103 53 1 161 256 252 354 3.51e-16 82.4
Msa0382350 AT4G18020.3 34.559 136 80 3 6 134 12 145 5.03e-13 72.4
Msa0382350 AT4G18020.2 41.748 103 53 1 161 256 252 354 3.51e-16 82.4
Msa0382350 AT4G18020.2 34.559 136 80 3 6 134 12 145 5.03e-13 72.4
Msa0382350 AT4G18020.1 41.748 103 53 1 161 256 252 354 3.51e-16 82.4
Msa0382350 AT4G18020.1 34.559 136 80 3 6 134 12 145 5.03e-13 72.4
Msa0382350 AT4G18020.6 41.748 103 53 1 161 256 252 354 3.51e-16 82.4
Msa0382350 AT4G18020.6 34.559 136 80 3 6 134 12 145 5.03e-13 72.4
Msa0382350 AT4G18020.9 41.748 103 53 1 161 256 252 354 3.51e-16 82.4
Msa0382350 AT4G18020.9 34.559 136 80 3 6 134 12 145 5.03e-13 72.4
Msa0382350 AT2G20570.2 61.404 57 22 0 200 256 171 227 5.95e-16 81.3
Msa0382350 AT1G68670.1 31.818 154 90 4 181 333 198 337 7.45e-13 70.9
Msa0382350 AT4G13640.1 42.708 96 39 3 198 282 37 127 2.93e-12 68.2
Msa0382350 AT4G13640.2 42.708 96 39 3 198 282 37 127 3.05e-12 68.2
Msa0382350 AT1G49560.1 38.182 110 61 3 195 298 189 297 7.91e-12 67.4
Msa0382350 AT3G24120.1 42.105 95 39 3 198 281 41 130 1.24e-11 66.6
Msa0382350 AT3G24120.2 42.105 95 39 3 198 281 41 130 1.25e-11 66.6
Msa0382350 AT1G25550.1 51.667 60 28 1 197 255 208 267 1.44e-11 67.0
Msa0382350 AT3G04030.1 50.847 59 28 1 194 251 41 99 3.08e-11 66.2
Msa0382350 AT3G04030.3 50.847 59 28 1 194 251 41 99 3.52e-11 65.9
Msa0382350 AT2G03500.1 46.875 64 33 1 195 257 230 293 3.62e-11 66.2
Msa0382350 AT4G37180.1 49.180 61 30 1 196 255 208 268 4.70e-11 65.5
Msa0382350 AT4G37180.2 49.180 61 30 1 196 255 215 275 5.86e-11 65.1
Msa0382350 AT4G00760.1 27.670 206 121 8 30 215 1 198 7.33e-11 64.7
Msa0382350 AT1G10470.3 32.061 131 77 2 14 132 22 152 7.59e-11 63.5
Msa0382350 AT1G10470.1 32.061 131 77 2 14 132 36 166 8.58e-11 63.5

Find 185 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCATTAGTTTAATGTTTA+AGG 0.058899 3_1:+84847351 Msa0382350:three_prime_UTR
CGTTGATCCGGGAATTTATT+TGG 0.160454 3_1:-84845742 None:intergenic
GCAAGATAAGATGAAATTAT+TGG 0.247006 3_1:+84847042 Msa0382350:CDS
TCCAACTTGTCTCATGGTTT+TGG 0.250920 3_1:+84843097 Msa0382350:CDS
TCAAGCGACGTACCGTTATC+TGG 0.285277 3_1:+84845961 Msa0382350:CDS
ACATTTGGCAGCATGTAATT+AGG 0.295640 3_1:+84844593 Msa0382350:CDS
TATCTTTGTGACAGGAGTTT+TGG 0.297920 3_1:+84847101 Msa0382350:exon
TCCAGCATGCTTCATTTGTA+TGG 0.304531 3_1:-84846313 None:intergenic
ATTCCTTGGGAGTGCATATC+TGG 0.307526 3_1:-84846096 None:intergenic
TATTTGAGAATGGGTGGTTC+TGG 0.310707 3_1:+84845418 Msa0382350:CDS
TTGAAGAGAAAGAATTTGTT+TGG 0.311046 3_1:-84845987 None:intergenic
CGTTAATCAGAATATTCTTC+AGG 0.324708 3_1:+84845621 Msa0382350:CDS
TGAACTTGTGGGACTTGAAA+TGG 0.326717 3_1:+84844321 Msa0382350:CDS
GCTAGTATGGTGGCAGCCTT+AGG 0.331673 3_1:+84845379 Msa0382350:CDS
GCAGAAAATTCAGATGAAAA+TGG 0.333558 3_1:+84844706 Msa0382350:CDS
GTTTCCATATAATTATTTCT+TGG 0.335612 3_1:-84847514 None:intergenic
GTTGATCCGGGAATTTATTT+GGG 0.335841 3_1:-84845741 None:intergenic
TCCCATCCCAAATAAATTCC+CGG 0.335864 3_1:+84845735 Msa0382350:CDS
TGGTAACGAGGGAAATGAAA+TGG 0.336379 3_1:-84842915 None:intergenic
CCCTTGCAAGCGGGGTATCC+TGG 0.337535 3_1:+84846063 Msa0382350:CDS
AATTGTTTAAATTACGTGAT+TGG 0.348210 3_1:-84845558 None:intergenic
GCAAAACTTGGCCGTTGATC+CGG 0.363698 3_1:-84845754 None:intergenic
AACTCTCTTGCTCCAGTTAA+CGG 0.366243 3_1:+84846228 Msa0382350:CDS
AGAAGAAGCCTCGGGTTGTT+TGG 0.367984 3_1:+84844815 Msa0382350:CDS
GCTACCAAGAAATAATTATA+TGG 0.369196 3_1:+84847510 Msa0382350:three_prime_UTR
TAGAGGAGCTAAAGAACATT+TGG 0.372140 3_1:+84844578 Msa0382350:CDS
CTGGAATTTAAGTTGATCAT+TGG 0.373200 3_1:-84845584 None:intergenic
TCCTTCGGGGCTTCTTCAGT+TGG 0.386130 3_1:+84845534 Msa0382350:CDS
CTGAAGAATATTCTGATTAA+CGG 0.389124 3_1:-84845620 None:intergenic
TCTTGGTTCACTGGAATACT+TGG 0.389557 3_1:+84846413 Msa0382350:CDS
AACGGTAATTTGCCATTTCA+AGG 0.393348 3_1:+84846147 Msa0382350:CDS
CTGCCACCATACTAGCTTGT+TGG 0.395940 3_1:-84845372 None:intergenic
CGGTCTTCCCATCCTTGAAA+TGG 0.402240 3_1:-84846159 None:intergenic
GCTGAAACCTGTGAGATTAG+AGG 0.402851 3_1:+84844561 Msa0382350:CDS
GAAAGAAAACACGGAGGTAT+AGG 0.402851 3_1:+84845844 Msa0382350:CDS
AACACTCCAACTAGTCTTAA+CGG 0.404206 3_1:+84845499 Msa0382350:CDS
TTCTAATAATCTTGGTTCAC+TGG 0.404941 3_1:+84846404 Msa0382350:CDS
ATTCTGATTAACGGGAGTTA+TGG 0.410279 3_1:-84845611 None:intergenic
TAATCTTTCGTTCTGACAGC+AGG 0.411338 3_1:-84847466 None:intergenic
CCTTCGGGGCTTCTTCAGTT+GGG 0.414763 3_1:+84845535 Msa0382350:CDS
CAAGATAAGATGAAATTATT+GGG 0.416183 3_1:+84847043 Msa0382350:CDS
ATTTCAGTGTTGTCTGCATA+TGG 0.417968 3_1:+84844487 Msa0382350:intron
GGTAACGAGGGAAATGAAAT+GGG 0.423435 3_1:-84842914 None:intergenic
CACGCATTCCGATGGGAAAA+CGG 0.428750 3_1:-84843055 None:intergenic
TTGGTAGCAACAATCCCTTC+AGG 0.429338 3_1:-84847495 None:intergenic
GAAAACTCCTAGGACAAAAC+TGG 0.429891 3_1:-84847204 None:intergenic
AAGGTAGGCACGGTGATAAT+TGG 0.437512 3_1:+84845938 Msa0382350:CDS
CGAGGCTTCTTCTGAGCTGA+TGG 0.438400 3_1:-84844805 None:intergenic
AAACACGGAGGTATAGGAAT+AGG 0.439930 3_1:+84845850 Msa0382350:CDS
TGCAAACCAACAAGCTAGTA+TGG 0.442595 3_1:+84845366 Msa0382350:CDS
AGGTGGAGCTAGTTGTTGTC+TGG 0.446742 3_1:-84846269 None:intergenic
AGATCAATCTTATTTGAGAA+TGG 0.446802 3_1:+84845408 Msa0382350:CDS
GAACTAGAGGTGGCAAAACT+TGG 0.447157 3_1:-84845766 None:intergenic
GTTGCTGCTGTTAATCAGTT+AGG 0.449852 3_1:+84844862 Msa0382350:CDS
TGAAGAATATTCTGATTAAC+GGG 0.453613 3_1:-84845619 None:intergenic
GATCAATCTTATTTGAGAAT+GGG 0.453918 3_1:+84845409 Msa0382350:CDS
ATCCGGGAATTTATTTGGGA+TGG 0.454627 3_1:-84845737 None:intergenic
AGCTTAAATCCATCCATGTC+AGG 0.455967 3_1:-84844295 None:intergenic
GGTAAGTAGCATCCTGATTA+CGG 0.456384 3_1:-84846179 None:intergenic
GACTAAGAAAAGAAAGGATC+AGG 0.456770 3_1:+84844735 Msa0382350:CDS
GCTTCTTTGCCCTTGCAAGC+GGG 0.456904 3_1:+84846054 Msa0382350:CDS
GGAGGTATAGGAATAGGATA+TGG 0.457148 3_1:+84845856 Msa0382350:CDS
TGCTGGCTTATGATATTAGC+TGG 0.457220 3_1:-84846375 None:intergenic
GGCTTCTTTGCCCTTGCAAG+CGG 0.465152 3_1:+84846053 Msa0382350:CDS
CAAAACTTGGCCGTTGATCC+GGG 0.465888 3_1:-84845753 None:intergenic
GAAGATGAGGATAAAGAGAA+TGG 0.467439 3_1:+84844766 Msa0382350:CDS
AATTCACCTGAGTATATAAA+CGG 0.467724 3_1:+84846129 Msa0382350:CDS
GAGCTAGTTGTTGTCTGGCC+TGG 0.468240 3_1:-84846264 None:intergenic
GATTATTAGAAAACTTCTGC+TGG 0.476268 3_1:-84846392 None:intergenic
TCCAAAACCATGAGACAAGT+TGG 0.479542 3_1:-84843098 None:intergenic
AATTATCCCACTAGGTGAAA+AGG 0.479567 3_1:-84845467 None:intergenic
ACACTCCAACTAGTCTTAAC+GGG 0.480069 3_1:+84845500 Msa0382350:CDS
CGACGATCCAACTTGTCTCA+TGG 0.481091 3_1:+84843091 Msa0382350:CDS
CCAGCATGCTTCATTTGTAT+GGG 0.481160 3_1:-84846312 None:intergenic
TTTAGCTCCTCTAATCTCAC+AGG 0.481770 3_1:-84844568 None:intergenic
AGGATGGGAAGACCGTAATC+AGG 0.483908 3_1:+84846167 Msa0382350:CDS
TTTAAGCTGCTTGAACTTGT+GGG 0.484142 3_1:+84844310 Msa0382350:CDS
ACCAGGATACCCCGCTTGCA+AGG 0.485505 3_1:-84846064 None:intergenic
AACAGAGAAAAGAGTGGTAA+TGG 0.486289 3_1:-84842973 None:intergenic
TGTTTGAGATACCGAGACTT+GGG 0.488772 3_1:-84845795 None:intergenic
TCCGGGAATTTATTTGGGAT+GGG 0.491640 3_1:-84845736 None:intergenic
CCATGCCCGTTAAGACTAGT+TGG 0.492442 3_1:-84845505 None:intergenic
CAGGGAATGCCAATGTCCAT+AGG 0.498172 3_1:+84845640 Msa0382350:CDS
CCCATACAAATGAAGCATGC+TGG 0.498373 3_1:+84846312 Msa0382350:CDS
GTTAATCAGAATATTCTTCA+GGG 0.498546 3_1:+84845622 Msa0382350:CDS
AAATAGCATGTGTCCATGAC+AGG 0.502027 3_1:-84847179 None:intergenic
TCCGATGGGAAAACGGTCAC+CGG 0.502454 3_1:-84843048 None:intergenic
TCTTTCTCTATGCTGGATCA+AGG 0.503800 3_1:+84845919 Msa0382350:CDS
GTAATTTGCCATTTCAAGGA+TGG 0.513037 3_1:+84846151 Msa0382350:CDS
GAAGAAGAAGTCTGATCCAA+AGG 0.514805 3_1:+84844615 Msa0382350:CDS
GACAAAACTACTTCTGATAG+TGG 0.516959 3_1:+84844661 Msa0382350:CDS
GAACGTGGCAAGCCATCTCC+AGG 0.523004 3_1:+84845224 Msa0382350:CDS
TTTGTTTGGATTCCAGATAA+CGG 0.525042 3_1:-84845973 None:intergenic
ATTTAAGCTGCTTGAACTTG+TGG 0.531591 3_1:+84844309 Msa0382350:CDS
ATACTTGGCGAGTTCAATGA+TGG 0.533419 3_1:+84846428 Msa0382350:CDS
CTAGTATGGTGGCAGCCTTA+GGG 0.534344 3_1:+84845380 Msa0382350:CDS
TGTTATTGCTTGACTAGTTG+TGG 0.534638 3_1:-84844209 None:intergenic
CTAGTTGTTGTCTGGCCTGG+TGG 0.535200 3_1:-84846261 None:intergenic
CTTCTTTGCCCTTGCAAGCG+GGG 0.537483 3_1:+84846055 Msa0382350:CDS
ACTTGACTCTAACTTGACTC+TGG 0.537992 3_1:-84847258 None:intergenic
TAATTTGCCATTTCAAGGAT+GGG 0.541605 3_1:+84846152 Msa0382350:CDS
AAATTACCGTTTATATACTC+AGG 0.541639 3_1:-84846135 None:intergenic
ATTGATAATTCCTCCTGTCA+TGG 0.542239 3_1:+84847166 Msa0382350:three_prime_UTR
GCCTCGGGTTGTTTGGTCTG+TGG 0.542268 3_1:+84844822 Msa0382350:CDS
GGCAGTGGACTAAGATCCGC+AGG 0.543371 3_1:+84844682 Msa0382350:CDS
TTGTTTGAGATACCGAGACT+TGG 0.548378 3_1:-84845796 None:intergenic
TAACGGGAGTTATGGCTGAC+TGG 0.548521 3_1:-84845603 None:intergenic
ACTACTTCTGATAGTGGCAG+TGG 0.549024 3_1:+84844667 Msa0382350:CDS
TACCACTCAAATGTTACTTG+TGG 0.549615 3_1:+84846198 Msa0382350:CDS
CGACGGGGTATCTTTGTGAC+AGG 0.549898 3_1:+84847093 Msa0382350:exon
TGTGCACATCACTGATTACC+AGG 0.551505 3_1:-84844270 None:intergenic
CATCAGCTCAGAAGAAGCCT+CGG 0.554303 3_1:+84844806 Msa0382350:CDS
GGCGAGAACACGCATTCCGA+TGG 0.558372 3_1:-84843063 None:intergenic
CCAGGATACCCCGCTTGCAA+GGG 0.561131 3_1:-84846063 None:intergenic
CAAATAAATTCCCGGATCAA+CGG 0.562184 3_1:+84845743 Msa0382350:CDS
AGTCTCGGTATCTCAAACAA+TGG 0.562603 3_1:+84845799 Msa0382350:CDS
CAGATAATCACAGGCACCAT+GGG 0.562735 3_1:-84844539 None:intergenic
GGCGAGTTCAATGATGGGAC+AGG 0.562860 3_1:+84846434 Msa0382350:CDS
AAAGATTAAACGTGCCTGAA+GGG 0.564313 3_1:+84847481 Msa0382350:three_prime_UTR
CAATCTTATTTGAGAATGGG+TGG 0.565295 3_1:+84845412 Msa0382350:CDS
GAGGCTTCTTCTGAGCTGAT+GGG 0.565647 3_1:-84844804 None:intergenic
AAAGCTGACTAAGAAAAGAA+AGG 0.566687 3_1:+84844729 Msa0382350:CDS
AGGGAATGCCAATGTCCATA+GGG 0.567298 3_1:+84845641 Msa0382350:CDS
TTGCAAGTGATCAAACCCTA+TGG 0.568247 3_1:-84845656 None:intergenic
TCTCTATGCTGGATCAAGGT+AGG 0.568314 3_1:+84845923 Msa0382350:CDS
TGATCACTTGCAAAACAGCA+AGG 0.568375 3_1:+84845666 Msa0382350:CDS
AGATTGATCTGCACTCCCTA+AGG 0.568615 3_1:-84845395 None:intergenic
GACAACAACTAGCTCCACCT+TGG 0.570450 3_1:+84846272 Msa0382350:CDS
AATCTTTCGTTCTGACAGCA+GGG 0.578925 3_1:-84847465 None:intergenic
CTCAAACAATGGCTTGATGT+CGG 0.579465 3_1:+84845810 Msa0382350:CDS
TGTTCCTCCTTCAGATAACA+TGG 0.580834 3_1:+84846032 Msa0382350:CDS
ATCCCACAAAGAAAACTCCT+AGG 0.581413 3_1:-84847214 None:intergenic
ATCAGCTCAGAAGAAGCCTC+GGG 0.581453 3_1:+84844807 Msa0382350:CDS
GAAAGATTAAACGTGCCTGA+AGG 0.583000 3_1:+84847480 Msa0382350:three_prime_UTR
TATGCGATAATTACTCCGAC+GGG 0.584211 3_1:+84847077 Msa0382350:CDS
AGATCCCCACTTACTTATGA+CGG 0.584541 3_1:-84844350 None:intergenic
CCAACTAGTCTTAACGGGCA+TGG 0.588692 3_1:+84845505 Msa0382350:CDS
GTTTGAGATACCGAGACTTG+GGG 0.591845 3_1:-84845794 None:intergenic
GCAGATAATCACAGGCACCA+TGG 0.592029 3_1:-84844540 None:intergenic
TGATCAAACCCTATGGACAT+TGG 0.593062 3_1:-84845649 None:intergenic
TGCATATGGTGATACAAAGC+TGG 0.593897 3_1:+84844501 Msa0382350:CDS
GATCCCCACTTACTTATGAC+GGG 0.593976 3_1:-84844349 None:intergenic
AGAAAATTCTGAATGTTGAG+AGG 0.594209 3_1:-84845899 None:intergenic
ATATGCGATAATTACTCCGA+CGG 0.598221 3_1:+84847076 Msa0382350:CDS
GTGCACATGCCTGACATGGA+TGG 0.600433 3_1:+84844286 Msa0382350:CDS
CCCAACTGAAGAAGCCCCGA+AGG 0.603189 3_1:-84845535 None:intergenic
AGATTACCAATTATCCCACT+AGG 0.605896 3_1:-84845475 None:intergenic
AAAGAAGCCATGTTATCTGA+AGG 0.609057 3_1:-84846039 None:intergenic
AGGTTTCAGCAGATAATCAC+AGG 0.609824 3_1:-84844548 None:intergenic
GATCACTTGCAAAACAGCAA+GGG 0.610593 3_1:+84845667 Msa0382350:CDS
TGAGCTGCATTCAGTTAACT+CGG 0.614968 3_1:-84846340 None:intergenic
TGATGTGCACATGCCTGACA+TGG 0.615041 3_1:+84844282 Msa0382350:CDS
TCAGGATGAAGACGAAGATG+AGG 0.615403 3_1:+84844753 Msa0382350:CDS
ACAAGTTGGATCGTCGTCAA+CGG 0.615563 3_1:-84843084 None:intergenic
GCGAGAACACGCATTCCGAT+GGG 0.617268 3_1:-84843062 None:intergenic
GACCGTGGTATTGACATCTA+CGG 0.617438 3_1:-84843130 None:intergenic
ATATCTGGCAACGAACCACC+AGG 0.619562 3_1:-84846081 None:intergenic
TTGCCAGATATGCACTCCCA+AGG 0.620552 3_1:+84846093 Msa0382350:CDS
ATGCTGGATCAAGGTAGGCA+CGG 0.622381 3_1:+84845928 Msa0382350:CDS
GATAAGATGAAATTATTGGG+TGG 0.625103 3_1:+84847046 Msa0382350:CDS
ATCCACAAGTAACATTTGAG+TGG 0.625700 3_1:-84846200 None:intergenic
CCCACTTACTTATGACGGGA+AGG 0.626480 3_1:-84844345 None:intergenic
GAAGCCATGTTATCTGAAGG+AGG 0.632238 3_1:-84846036 None:intergenic
GATACAAAGCTGGTGATGAA+AGG 0.634012 3_1:+84844511 Msa0382350:CDS
ATCTTTCGTTCTGACAGCAG+GGG 0.641270 3_1:-84847464 None:intergenic
AAATATCACAAGGGAGAACG+TGG 0.641409 3_1:+84845209 Msa0382350:CDS
TACTTGGCGAGTTCAATGAT+GGG 0.644216 3_1:+84846429 Msa0382350:CDS
TTGCAAGCGGGGTATCCTGG+TGG 0.644472 3_1:+84846066 Msa0382350:CDS
TAGCATGTGTCCATGACAGG+AGG 0.662263 3_1:-84847176 None:intergenic
TAACAGCAGCAACAAACTTG+CGG 0.664827 3_1:-84844852 None:intergenic
TCCACAGACCAAACAACCCG+AGG 0.670707 3_1:-84844823 None:intergenic
AAACAAAGACAAGTTTGACC+TGG 0.671629 3_1:+84844252 Msa0382350:CDS
CTCCGTAGATGTCAATACCA+CGG 0.676022 3_1:+84843128 Msa0382350:CDS
TTTGAGATACCGAGACTTGG+GGG 0.680383 3_1:-84845793 None:intergenic
CAATCTAGAATTCATCAATG+AGG 0.682137 3_1:-84847147 None:intergenic
TGAATGTCGAAAATATCACA+AGG 0.689686 3_1:+84845199 Msa0382350:CDS
GTGATGAAAGGAATTTCCCA+TGG 0.694201 3_1:+84844523 Msa0382350:CDS
ACGCACCCTGAAAGAAAACA+CGG 0.699020 3_1:+84845835 Msa0382350:CDS
CTATGAAACAGAGAAAAGAG+TGG 0.699177 3_1:-84842979 None:intergenic
AAACCAACAAGCTAGTATGG+TGG 0.708833 3_1:+84845369 Msa0382350:CDS
GAATGTCGAAAATATCACAA+GGG 0.725612 3_1:+84845200 Msa0382350:CDS
CTGTCACAAAGATACCCCGT+CGG 0.726754 3_1:-84847092 None:intergenic
ATGCGATAATTACTCCGACG+GGG 0.780483 3_1:+84847078 Msa0382350:CDS
AGAGAATGGTAATGACAACG+AGG 0.788270 3_1:+84844780 Msa0382350:CDS
CACCCTGAAAGAAAACACGG+AGG 0.809478 3_1:+84845838 Msa0382350:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTATTTGAATTTC+TGG - chr3_1:84843319-84843338 None:intergenic 10.0%
!! ATAAAAAAAAACATGTCTTT+AGG + chr3_1:84843328-84843347 Msa0382350:intron 15.0%
!!! ATATATTTCATTTTGTTTAG+TGG + chr3_1:84843763-84843782 Msa0382350:intron 15.0%
!! TCAAAATGAATAAATAGAAA+AGG - chr3_1:84844409-84844428 None:intergenic 15.0%
!!! ATCATATCAAGAATTTTTTT+GGG - chr3_1:84845180-84845199 None:intergenic 15.0%
!! ATTAAAAAATTTAGTATCCA+AGG - chr3_1:84846292-84846311 None:intergenic 15.0%
!!! ACATTTTTTGAATATAATGT+TGG + chr3_1:84846462-84846481 Msa0382350:intron 15.0%
!! TGAAATTTGAAGATTTAAAT+TGG + chr3_1:84846703-84846722 Msa0382350:intron 15.0%
!!! CAATTTTTACAGATTTTATG+TGG + chr3_1:84843529-84843548 Msa0382350:intron 20.0%
!! ATATCTAGTAAAAATATGCT+TGG - chr3_1:84843665-84843684 None:intergenic 20.0%
!!! TATTTTTACTAGATATGTGA+AGG + chr3_1:84843669-84843688 Msa0382350:intron 20.0%
!! ATTAACACCAAAACAAAAAA+TGG - chr3_1:84843819-84843838 None:intergenic 20.0%
!!! TCAAAATGTTTTTGAATATC+TGG + chr3_1:84844985-84845004 Msa0382350:intron 20.0%
!! ATAATACTCAAATTCAGTAA+TGG - chr3_1:84845124-84845143 None:intergenic 20.0%
!!! CATCATATCAAGAATTTTTT+TGG - chr3_1:84845181-84845200 None:intergenic 20.0%
!! AATTGTTTAAATTACGTGAT+TGG - chr3_1:84845561-84845580 None:intergenic 20.0%
!! ATTAGTAAAAATCATTCCTT+GGG - chr3_1:84846112-84846131 None:intergenic 20.0%
!! AATTAGTAAAAATCATTCCT+TGG - chr3_1:84846113-84846132 None:intergenic 20.0%
!!! TGTATAGTTTTTTTTGCATA+TGG + chr3_1:84846521-84846540 Msa0382350:intron 20.0%
!! AATTTGAAGATTTAAATTGG+TGG + chr3_1:84846706-84846725 Msa0382350:intron 20.0%
!! AAGAACATCAATGAAATATA+TGG - chr3_1:84846759-84846778 None:intergenic 20.0%
!!! CATGTTGTTTTATTTAACTT+AGG + chr3_1:84846904-84846923 Msa0382350:intron 20.0%
!! CAAGATAAGATGAAATTATT+GGG + chr3_1:84847043-84847062 Msa0382350:CDS 20.0%
!!! TCTCATTAGTTTAATGTTTA+AGG + chr3_1:84847351-84847370 Msa0382350:three_prime_UTR 20.0%
!!! GTTTCCATATAATTATTTCT+TGG - chr3_1:84847517-84847536 None:intergenic 20.0%
!!! ATGATTAATTTTGGTAACGA+GGG - chr3_1:84842929-84842948 None:intergenic 25.0%
!!! AATGATTAATTTTGGTAACG+AGG - chr3_1:84842930-84842949 None:intergenic 25.0%
! AACGATATTGTGTAGATATT+TGG + chr3_1:84843388-84843407 Msa0382350:intron 25.0%
!! GGAACTTTTACTAAGAATAA+AGG + chr3_1:84843409-84843428 Msa0382350:intron 25.0%
! ATGAAAAGAGTCATGATTTA+GGG + chr3_1:84843436-84843455 Msa0382350:intron 25.0%
! TGTTTCTTTATACTATCACA+GGG - chr3_1:84843511-84843530 None:intergenic 25.0%
!! TTGTTTCTTTATACTATCAC+AGG - chr3_1:84843512-84843531 None:intergenic 25.0%
! CAAAGACAAGAAAAGAAAAA+TGG - chr3_1:84844019-84844038 None:intergenic 25.0%
! TACTAATCATGAAGAAATAC+AGG - chr3_1:84844075-84844094 None:intergenic 25.0%
!!! AAGTGATACTTATTTCTGAT+TGG + chr3_1:84844174-84844193 Msa0382350:intron 25.0%
!!! AGTGATACTTATTTCTGATT+GGG + chr3_1:84844175-84844194 Msa0382350:intron 25.0%
! AAGAAAAAAATTAACAGCTG+AGG - chr3_1:84844386-84844405 None:intergenic 25.0%
!!! TCATTTTGACTCTTGTTTAT+TGG + chr3_1:84844420-84844439 Msa0382350:intron 25.0%
! ATAAAAATTGTTTGTGTTGC+AGG - chr3_1:84844913-84844932 None:intergenic 25.0%
!!! CGATGTTTATTTTAAATCCT+AGG + chr3_1:84845010-84845029 Msa0382350:intron 25.0%
!!! TCATAAGTCATTTTAAACCT+AGG - chr3_1:84845030-84845049 None:intergenic 25.0%
! TAATGGAATACTTTATGACA+TGG - chr3_1:84845107-84845126 None:intergenic 25.0%
! TAAAGAACTAGAAAAATACC+TGG - chr3_1:84845245-84845264 None:intergenic 25.0%
! ATTTCTTTCACTGAATGTTT+CGG + chr3_1:84845289-84845308 Msa0382350:intron 25.0%
!! AGATCAATCTTATTTGAGAA+TGG + chr3_1:84845408-84845427 Msa0382350:CDS 25.0%
!! GATCAATCTTATTTGAGAAT+GGG + chr3_1:84845409-84845428 Msa0382350:CDS 25.0%
! TGAAGAATATTCTGATTAAC+GGG - chr3_1:84845622-84845641 None:intergenic 25.0%
! CTGAAGAATATTCTGATTAA+CGG - chr3_1:84845623-84845642 None:intergenic 25.0%
! GTTAATCAGAATATTCTTCA+GGG + chr3_1:84845622-84845641 Msa0382350:CDS 25.0%
!! TTGAAGAGAAAGAATTTGTT+TGG - chr3_1:84845990-84846009 None:intergenic 25.0%
! AATTCACCTGAGTATATAAA+CGG + chr3_1:84846129-84846148 Msa0382350:CDS 25.0%
! AAATTACCGTTTATATACTC+AGG - chr3_1:84846138-84846157 None:intergenic 25.0%
! AAAAAATTTAGTATCCAAGG+TGG - chr3_1:84846289-84846308 None:intergenic 25.0%
!! CAGAAGTTTTCTAATAATCT+TGG + chr3_1:84846396-84846415 Msa0382350:CDS 25.0%
! TATAATCTAATCAGTATGTG+TGG - chr3_1:84846584-84846603 None:intergenic 25.0%
!!! AATGATTTTAAGTCTTCTCT+CGG - chr3_1:84846670-84846689 None:intergenic 25.0%
!!! AAACATTTGTTTTTCTATCC+TGG + chr3_1:84846848-84846867 Msa0382350:intron 25.0%
!! AAGCAAAATATTTAGGACAA+GGG - chr3_1:84846985-84847004 None:intergenic 25.0%
! ACTATGGAAGCAAAATATTT+AGG - chr3_1:84846992-84847011 None:intergenic 25.0%
! AACATGGTATCAAATTACTA+TGG - chr3_1:84847008-84847027 None:intergenic 25.0%
! GCAAGATAAGATGAAATTAT+TGG + chr3_1:84847042-84847061 Msa0382350:CDS 25.0%
! GCTACCAAGAAATAATTATA+TGG + chr3_1:84847510-84847529 Msa0382350:three_prime_UTR 25.0%
!! ACTGATTTGTGAGAGAAAAA+TGG + chr3_1:84843019-84843038 Msa0382350:exon 30.0%
!! TCTTTAGGATCAAATCTAAC+TGG + chr3_1:84843343-84843362 Msa0382350:intron 30.0%
!! CTTTAGGATCAAATCTAACT+GGG + chr3_1:84843344-84843363 Msa0382350:intron 30.0%
GATGAAAAGAGTCATGATTT+AGG + chr3_1:84843435-84843454 Msa0382350:intron 30.0%
AAGTCAACACACTATGAATT+TGG - chr3_1:84843471-84843490 None:intergenic 30.0%
ACTTAATTATGTGCTTGCTT+GGG + chr3_1:84843631-84843650 Msa0382350:intron 30.0%
! AAGCAATGAAGCTCTAATTA+CGG - chr3_1:84843700-84843719 None:intergenic 30.0%
!! TTCATTTTGTTTAGTGGCTT+TGG + chr3_1:84843769-84843788 Msa0382350:intron 30.0%
!!! TGGTCAACCATTTTTTGTTT+TGG + chr3_1:84843809-84843828 Msa0382350:intron 30.0%
TTGACTATAACCAAGTGATT+GGG - chr3_1:84843996-84844015 None:intergenic 30.0%
!! TTCACTGTTGCTTTCTTTAT+TGG + chr3_1:84844113-84844132 Msa0382350:intron 30.0%
!! GTGATACTTATTTCTGATTG+GGG + chr3_1:84844176-84844195 Msa0382350:intron 30.0%
GCAGAAAATTCAGATGAAAA+TGG + chr3_1:84844706-84844725 Msa0382350:CDS 30.0%
AAAGCTGACTAAGAAAAGAA+AGG + chr3_1:84844729-84844748 Msa0382350:CDS 30.0%
ATAAAATTCAGTAAAGCTCG+AGG - chr3_1:84844949-84844968 None:intergenic 30.0%
!!! TAATGTTGTTTTACTTGCAG+AGG + chr3_1:84845149-84845168 Msa0382350:intron 30.0%
TGAATGTCGAAAATATCACA+AGG + chr3_1:84845199-84845218 Msa0382350:CDS 30.0%
GAATGTCGAAAATATCACAA+GGG + chr3_1:84845200-84845219 Msa0382350:CDS 30.0%
GAAACATTCAGTGAAAGAAA+TGG - chr3_1:84845290-84845309 None:intergenic 30.0%
TTTCTTTCACTGAATGTTTC+GGG + chr3_1:84845290-84845309 Msa0382350:intron 30.0%
!! AATGTTTCGGGTTTATGAAA+TGG + chr3_1:84845302-84845321 Msa0382350:intron 30.0%
!! CTGGAATTTAAGTTGATCAT+TGG - chr3_1:84845587-84845606 None:intergenic 30.0%
CGTTAATCAGAATATTCTTC+AGG + chr3_1:84845621-84845640 Msa0382350:CDS 30.0%
! TTGTTTTCACATCAGTATTC+AGG - chr3_1:84845711-84845730 None:intergenic 30.0%
AGAAAATTCTGAATGTTGAG+AGG - chr3_1:84845902-84845921 None:intergenic 30.0%
! AGAATTTTCTTTCTCTATGC+TGG + chr3_1:84845912-84845931 Msa0382350:CDS 30.0%
TTTGTTTGGATTCCAGATAA+CGG - chr3_1:84845976-84845995 None:intergenic 30.0%
! TAATTTGCCATTTCAAGGAT+GGG + chr3_1:84846152-84846171 Msa0382350:CDS 30.0%
GATTATTAGAAAACTTCTGC+TGG - chr3_1:84846395-84846414 None:intergenic 30.0%
TTCTAATAATCTTGGTTCAC+TGG + chr3_1:84846404-84846423 Msa0382350:CDS 30.0%
CAAGGAAATAATGTTTGAGA+TGG - chr3_1:84846560-84846579 None:intergenic 30.0%
!! ATGATTTTAAGTCTTCTCTC+GGG - chr3_1:84846669-84846688 None:intergenic 30.0%
TTCATTGATGTTCTTTGTGA+TGG + chr3_1:84846764-84846783 Msa0382350:intron 30.0%
ATCCTATGTGAATGTTCTAA+AGG - chr3_1:84846826-84846845 None:intergenic 30.0%
!! TTTGTTTTTCTATCCTGGAT+TGG + chr3_1:84846853-84846872 Msa0382350:intron 30.0%
ACAACATGCTATATACTCAA+CGG - chr3_1:84846892-84846911 None:intergenic 30.0%
! AGCAAAATATTTAGGACAAG+GGG - chr3_1:84846984-84847003 None:intergenic 30.0%
! GAAGCAAAATATTTAGGACA+AGG - chr3_1:84846986-84847005 None:intergenic 30.0%
GATAAGATGAAATTATTGGG+TGG + chr3_1:84847046-84847065 Msa0382350:CDS 30.0%
! CAATCTAGAATTCATCAATG+AGG - chr3_1:84847150-84847169 None:intergenic 30.0%
!! TATTTAACCAGTTTTGTCCT+AGG + chr3_1:84847197-84847216 Msa0382350:three_prime_UTR 30.0%
AACAGAGAAAAGAGTGGTAA+TGG - chr3_1:84842976-84842995 None:intergenic 35.0%
CTATGAAACAGAGAAAAGAG+TGG - chr3_1:84842982-84843001 None:intergenic 35.0%
GAGAGAAAAATGGATGATTC+CGG + chr3_1:84843029-84843048 Msa0382350:exon 35.0%
GATCAAATCTAACTGGGAAA+TGG + chr3_1:84843350-84843369 Msa0382350:intron 35.0%
CACTTAATTATGTGCTTGCT+TGG + chr3_1:84843630-84843649 Msa0382350:intron 35.0%
! ATGAGCAACTTTTCCTACTA+CGG - chr3_1:84843735-84843754 None:intergenic 35.0%
TGGACTGAATATGCACTTTA+TGG + chr3_1:84843789-84843808 Msa0382350:intron 35.0%
TGACTAAACTCCGGAATATT+AGG - chr3_1:84843884-84843903 None:intergenic 35.0%
TAATATTCCGGAGTTTAGTC+AGG + chr3_1:84843883-84843902 Msa0382350:intron 35.0%
AATATTCCGGAGTTTAGTCA+GGG + chr3_1:84843884-84843903 Msa0382350:intron 35.0%
GTTGACTATAACCAAGTGAT+TGG - chr3_1:84843997-84844016 None:intergenic 35.0%
! ACTGTTGTTGCTTAGATTTC+AGG + chr3_1:84844047-84844066 Msa0382350:intron 35.0%
! TGTTATTGCTTGACTAGTTG+TGG - chr3_1:84844212-84844231 None:intergenic 35.0%
!!! GTCTTTGTTTTCTCTCAACA+TGG - chr3_1:84844242-84844261 None:intergenic 35.0%
AAACAAAGACAAGTTTGACC+TGG + chr3_1:84844252-84844271 Msa0382350:CDS 35.0%
ATTTAAGCTGCTTGAACTTG+TGG + chr3_1:84844309-84844328 Msa0382350:CDS 35.0%
TTTAAGCTGCTTGAACTTGT+GGG + chr3_1:84844310-84844329 Msa0382350:CDS 35.0%
ATTTCAGTGTTGTCTGCATA+TGG + chr3_1:84844487-84844506 Msa0382350:intron 35.0%
TAGAGGAGCTAAAGAACATT+TGG + chr3_1:84844578-84844597 Msa0382350:CDS 35.0%
ACATTTGGCAGCATGTAATT+AGG + chr3_1:84844593-84844612 Msa0382350:CDS 35.0%
!!! CTGGTTTTGTTTTTCTCCTT+TGG - chr3_1:84844634-84844653 None:intergenic 35.0%
!!! AGTAGTTTTGTCTGGTTTAC+TGG - chr3_1:84844653-84844672 None:intergenic 35.0%
!!! CTATCAGAAGTAGTTTTGTC+TGG - chr3_1:84844661-84844680 None:intergenic 35.0%
GACAAAACTACTTCTGATAG+TGG + chr3_1:84844661-84844680 Msa0382350:CDS 35.0%
GACTAAGAAAAGAAAGGATC+AGG + chr3_1:84844735-84844754 Msa0382350:CDS 35.0%
GAAGATGAGGATAAAGAGAA+TGG + chr3_1:84844766-84844785 Msa0382350:CDS 35.0%
TTATGATGATAGATGCCACT+TGG + chr3_1:84845044-84845063 Msa0382350:intron 35.0%
! TATGATGATAGATGCCACTT+GGG + chr3_1:84845045-84845064 Msa0382350:intron 35.0%
GAAATGAAATTCATCCCAAG+TGG - chr3_1:84845062-84845081 None:intergenic 35.0%
ACTAGAAAAATACCTGGAGA+TGG - chr3_1:84845239-84845258 None:intergenic 35.0%
! CAATCTTATTTGAGAATGGG+TGG + chr3_1:84845412-84845431 Msa0382350:CDS 35.0%
AATTATCCCACTAGGTGAAA+AGG - chr3_1:84845470-84845489 None:intergenic 35.0%
! TTTTCACCTAGTGGGATAAT+TGG + chr3_1:84845469-84845488 Msa0382350:CDS 35.0%
AGATTACCAATTATCCCACT+AGG - chr3_1:84845478-84845497 None:intergenic 35.0%
!! AACACTCCAACTAGTCTTAA+CGG + chr3_1:84845499-84845518 Msa0382350:CDS 35.0%
ATTCTGATTAACGGGAGTTA+TGG - chr3_1:84845614-84845633 None:intergenic 35.0%
GTTGATCCGGGAATTTATTT+GGG - chr3_1:84845744-84845763 None:intergenic 35.0%
CAAATAAATTCCCGGATCAA+CGG + chr3_1:84845743-84845762 Msa0382350:CDS 35.0%
AAAGAAGCCATGTTATCTGA+AGG - chr3_1:84846042-84846061 None:intergenic 35.0%
! AACGGTAATTTGCCATTTCA+AGG + chr3_1:84846147-84846166 Msa0382350:CDS 35.0%
! GTAATTTGCCATTTCAAGGA+TGG + chr3_1:84846151-84846170 Msa0382350:CDS 35.0%
! TACCACTCAAATGTTACTTG+TGG + chr3_1:84846198-84846217 Msa0382350:CDS 35.0%
ATCCACAAGTAACATTTGAG+TGG - chr3_1:84846203-84846222 None:intergenic 35.0%
TTCCCATAAATGCTTCTGTA+TGG + chr3_1:84846487-84846506 Msa0382350:intron 35.0%
!! AGCCATACAGAAGCATTTAT+GGG - chr3_1:84846492-84846511 None:intergenic 35.0%
!! AAGCCATACAGAAGCATTTA+TGG - chr3_1:84846493-84846512 None:intergenic 35.0%
ACAAATATAACCATGCTGAC+TGG - chr3_1:84846640-84846659 None:intergenic 35.0%
CTAAAGGACATCGAAAGTTA+CGG - chr3_1:84846810-84846829 None:intergenic 35.0%
!! GTCCTTTAGAACATTCACAT+AGG + chr3_1:84846821-84846840 Msa0382350:intron 35.0%
ACAAGTTATTGTACCAATCC+AGG - chr3_1:84846869-84846888 None:intergenic 35.0%
TAAAGTATGCAATGCTCGTT+TGG + chr3_1:84846938-84846957 Msa0382350:intron 35.0%
ATATGCGATAATTACTCCGA+CGG + chr3_1:84847076-84847095 Msa0382350:CDS 35.0%
! TATCTTTGTGACAGGAGTTT+TGG + chr3_1:84847101-84847120 Msa0382350:exon 35.0%
! ATTGATAATTCCTCCTGTCA+TGG + chr3_1:84847166-84847185 Msa0382350:three_prime_UTR 35.0%
! CTTGACTCTGGAAAAAGAAA+AGG - chr3_1:84847249-84847268 None:intergenic 35.0%
AAAGATTAAACGTGCCTGAA+GGG + chr3_1:84847481-84847500 Msa0382350:three_prime_UTR 35.0%
GGTAACGAGGGAAATGAAAT+GGG - chr3_1:84842917-84842936 None:intergenic 40.0%
! TGGTAACGAGGGAAATGAAA+TGG - chr3_1:84842918-84842937 None:intergenic 40.0%
! TCCAACTTGTCTCATGGTTT+TGG + chr3_1:84843097-84843116 Msa0382350:CDS 40.0%
TCCAAAACCATGAGACAAGT+TGG - chr3_1:84843101-84843120 None:intergenic 40.0%
TCTAACTGGGAAATGGAGTT+AGG + chr3_1:84843357-84843376 Msa0382350:intron 40.0%
! GAGTCATGATTTAGGGTCAA+AGG + chr3_1:84843443-84843462 Msa0382350:intron 40.0%
TAGAGCTTCATTGCTTGTAG+AGG + chr3_1:84843704-84843723 Msa0382350:intron 40.0%
CTAAACTCCGGAATATTAGG+AGG - chr3_1:84843881-84843900 None:intergenic 40.0%
TGATTGGGATCAAGAGGTTA+AGG - chr3_1:84843981-84844000 None:intergenic 40.0%
AGCTTAAATCCATCCATGTC+AGG - chr3_1:84844298-84844317 None:intergenic 40.0%
TGAACTTGTGGGACTTGAAA+TGG + chr3_1:84844321-84844340 Msa0382350:CDS 40.0%
AGATCCCCACTTACTTATGA+CGG - chr3_1:84844353-84844372 None:intergenic 40.0%
TGCATATGGTGATACAAAGC+TGG + chr3_1:84844501-84844520 Msa0382350:CDS 40.0%
! GATACAAAGCTGGTGATGAA+AGG + chr3_1:84844511-84844530 Msa0382350:CDS 40.0%
GTGATGAAAGGAATTTCCCA+TGG + chr3_1:84844523-84844542 Msa0382350:CDS 40.0%
AGGTTTCAGCAGATAATCAC+AGG - chr3_1:84844551-84844570 None:intergenic 40.0%
! TTTAGCTCCTCTAATCTCAC+AGG - chr3_1:84844571-84844590 None:intergenic 40.0%
GAAGAAGAAGTCTGATCCAA+AGG + chr3_1:84844615-84844634 Msa0382350:CDS 40.0%
! ATCTGAATTTTCTGCTCCTG+CGG - chr3_1:84844701-84844720 None:intergenic 40.0%
! AGAGAATGGTAATGACAACG+AGG + chr3_1:84844780-84844799 Msa0382350:CDS 40.0%
TAACAGCAGCAACAAACTTG+CGG - chr3_1:84844855-84844874 None:intergenic 40.0%
GTTGCTGCTGTTAATCAGTT+AGG + chr3_1:84844862-84844881 Msa0382350:CDS 40.0%
AAATATCACAAGGGAGAACG+TGG + chr3_1:84845209-84845228 Msa0382350:CDS 40.0%
TGCAAACCAACAAGCTAGTA+TGG + chr3_1:84845366-84845385 Msa0382350:CDS 40.0%
AAACCAACAAGCTAGTATGG+TGG + chr3_1:84845369-84845388 Msa0382350:CDS 40.0%
TATTTGAGAATGGGTGGTTC+TGG + chr3_1:84845418-84845437 Msa0382350:CDS 40.0%
! TTCAGATCCTTTTCACCTAG+TGG + chr3_1:84845460-84845479 Msa0382350:CDS 40.0%
! TCAGATCCTTTTCACCTAGT+GGG + chr3_1:84845461-84845480 Msa0382350:CDS 40.0%
!! ACACTCCAACTAGTCTTAAC+GGG + chr3_1:84845500-84845519 Msa0382350:CDS 40.0%
TGATCAAACCCTATGGACAT+TGG - chr3_1:84845652-84845671 None:intergenic 40.0%
TTGCAAGTGATCAAACCCTA+TGG - chr3_1:84845659-84845678 None:intergenic 40.0%
TGATCACTTGCAAAACAGCA+AGG + chr3_1:84845666-84845685 Msa0382350:CDS 40.0%
GATCACTTGCAAAACAGCAA+GGG + chr3_1:84845667-84845686 Msa0382350:CDS 40.0%
TCCCATCCCAAATAAATTCC+CGG + chr3_1:84845735-84845754 Msa0382350:CDS 40.0%
! TCCGGGAATTTATTTGGGAT+GGG - chr3_1:84845739-84845758 None:intergenic 40.0%
ATCCGGGAATTTATTTGGGA+TGG - chr3_1:84845740-84845759 None:intergenic 40.0%
CGTTGATCCGGGAATTTATT+TGG - chr3_1:84845745-84845764 None:intergenic 40.0%
! TGTTTGAGATACCGAGACTT+GGG - chr3_1:84845798-84845817 None:intergenic 40.0%
! TTGTTTGAGATACCGAGACT+TGG - chr3_1:84845799-84845818 None:intergenic 40.0%
AGTCTCGGTATCTCAAACAA+TGG + chr3_1:84845799-84845818 Msa0382350:CDS 40.0%
CTCAAACAATGGCTTGATGT+CGG + chr3_1:84845810-84845829 Msa0382350:CDS 40.0%
! TACCTCCGTGTTTTCTTTCA+GGG - chr3_1:84845843-84845862 None:intergenic 40.0%
! ATACCTCCGTGTTTTCTTTC+AGG - chr3_1:84845844-84845863 None:intergenic 40.0%
! GAAAGAAAACACGGAGGTAT+AGG + chr3_1:84845844-84845863 Msa0382350:CDS 40.0%
! AAACACGGAGGTATAGGAAT+AGG + chr3_1:84845850-84845869 Msa0382350:CDS 40.0%
! GGAGGTATAGGAATAGGATA+TGG + chr3_1:84845856-84845875 Msa0382350:CDS 40.0%
TCTTTCTCTATGCTGGATCA+AGG + chr3_1:84845919-84845938 Msa0382350:CDS 40.0%
TGTTCCTCCTTCAGATAACA+TGG + chr3_1:84846032-84846051 Msa0382350:CDS 40.0%
GGTAAGTAGCATCCTGATTA+CGG - chr3_1:84846182-84846201 None:intergenic 40.0%
AACTCTCTTGCTCCAGTTAA+CGG + chr3_1:84846228-84846247 Msa0382350:CDS 40.0%
CCAGCATGCTTCATTTGTAT+GGG - chr3_1:84846315-84846334 None:intergenic 40.0%
TCCAGCATGCTTCATTTGTA+TGG - chr3_1:84846316-84846335 None:intergenic 40.0%
TGAGCTGCATTCAGTTAACT+CGG - chr3_1:84846343-84846362 None:intergenic 40.0%
!! TGCTGGCTTATGATATTAGC+TGG - chr3_1:84846378-84846397 None:intergenic 40.0%
TCTTGGTTCACTGGAATACT+TGG + chr3_1:84846413-84846432 Msa0382350:CDS 40.0%
ATACTTGGCGAGTTCAATGA+TGG + chr3_1:84846428-84846447 Msa0382350:CDS 40.0%
TACTTGGCGAGTTCAATGAT+GGG + chr3_1:84846429-84846448 Msa0382350:CDS 40.0%
CTAATCAGTATGTGTGGTCA+AGG - chr3_1:84846578-84846597 None:intergenic 40.0%
CGAAAGTTACGGTGGTTAAT+TGG - chr3_1:84846799-84846818 None:intergenic 40.0%
ATACCATGTTCATGACATGC+AGG + chr3_1:84847018-84847037 Msa0382350:intron 40.0%
TATGCGATAATTACTCCGAC+GGG + chr3_1:84847077-84847096 Msa0382350:CDS 40.0%
AAATAGCATGTGTCCATGAC+AGG - chr3_1:84847182-84847201 None:intergenic 40.0%
GAAAACTCCTAGGACAAAAC+TGG - chr3_1:84847207-84847226 None:intergenic 40.0%
! TGTCCTAGGAGTTTTCTTTG+TGG + chr3_1:84847211-84847230 Msa0382350:three_prime_UTR 40.0%
! GTCCTAGGAGTTTTCTTTGT+GGG + chr3_1:84847212-84847231 Msa0382350:three_prime_UTR 40.0%
ATCCCACAAAGAAAACTCCT+AGG - chr3_1:84847217-84847236 None:intergenic 40.0%
ACTTGACTCTAACTTGACTC+TGG - chr3_1:84847261-84847280 None:intergenic 40.0%
AATCTTTCGTTCTGACAGCA+GGG - chr3_1:84847468-84847487 None:intergenic 40.0%
TAATCTTTCGTTCTGACAGC+AGG - chr3_1:84847469-84847488 None:intergenic 40.0%
GAAAGATTAAACGTGCCTGA+AGG + chr3_1:84847480-84847499 Msa0382350:three_prime_UTR 40.0%
! ACAAGTTGGATCGTCGTCAA+CGG - chr3_1:84843087-84843106 None:intergenic 45.0%
CTCCGTAGATGTCAATACCA+CGG + chr3_1:84843128-84843147 Msa0382350:CDS 45.0%
!! GACCGTGGTATTGACATCTA+CGG - chr3_1:84843133-84843152 None:intergenic 45.0%
GTCAATACCACGGTCAGATT+CGG + chr3_1:84843138-84843157 Msa0382350:intron 45.0%
TGTAGAGGTAGTACCGTAGT+AGG + chr3_1:84843719-84843738 Msa0382350:intron 45.0%
TTACCTCCCTGACTAAACTC+CGG - chr3_1:84843893-84843912 None:intergenic 45.0%
GTCAGGGAGGTAATTGAACT+CGG + chr3_1:84843900-84843919 Msa0382350:intron 45.0%
TCAGGGAGGTAATTGAACTC+GGG + chr3_1:84843901-84843920 Msa0382350:intron 45.0%
TCTCTCGAATGATTCCTCCT+AGG + chr3_1:84843949-84843968 Msa0382350:intron 45.0%
CTCTCGAATGATTCCTCCTA+GGG + chr3_1:84843950-84843969 Msa0382350:intron 45.0%
TCTCGAATGATTCCTCCTAG+GGG + chr3_1:84843951-84843970 Msa0382350:intron 45.0%
ACCTCTTGATCCCAATCACT+TGG + chr3_1:84843983-84844002 Msa0382350:intron 45.0%
ACCAAGTGATTGGGATCAAG+AGG - chr3_1:84843987-84844006 None:intergenic 45.0%
! TGTGCACATCACTGATTACC+AGG - chr3_1:84844273-84844292 None:intergenic 45.0%
ACCTTCCCGTCATAAGTAAG+TGG + chr3_1:84844344-84844363 Msa0382350:intron 45.0%
CCTTCCCGTCATAAGTAAGT+GGG + chr3_1:84844345-84844364 Msa0382350:intron 45.0%
CTTCCCGTCATAAGTAAGTG+GGG + chr3_1:84844346-84844365 Msa0382350:intron 45.0%
GATCCCCACTTACTTATGAC+GGG - chr3_1:84844352-84844371 None:intergenic 45.0%
CAGATAATCACAGGCACCAT+GGG - chr3_1:84844542-84844561 None:intergenic 45.0%
GCTGAAACCTGTGAGATTAG+AGG + chr3_1:84844561-84844580 Msa0382350:CDS 45.0%
!! ACTACTTCTGATAGTGGCAG+TGG + chr3_1:84844667-84844686 Msa0382350:CDS 45.0%
TCAGGATGAAGACGAAGATG+AGG + chr3_1:84844753-84844772 Msa0382350:CDS 45.0%
AGATTGATCTGCACTCCCTA+AGG - chr3_1:84845398-84845417 None:intergenic 45.0%
AGGGAATGCCAATGTCCATA+GGG + chr3_1:84845641-84845660 Msa0382350:CDS 45.0%
GAACTAGAGGTGGCAAAACT+TGG - chr3_1:84845769-84845788 None:intergenic 45.0%
! TTTGAGATACCGAGACTTGG+GGG - chr3_1:84845796-84845815 None:intergenic 45.0%
! GTTTGAGATACCGAGACTTG+GGG - chr3_1:84845797-84845816 None:intergenic 45.0%
ACGCACCCTGAAAGAAAACA+CGG + chr3_1:84845835-84845854 Msa0382350:CDS 45.0%
TCTCTATGCTGGATCAAGGT+AGG + chr3_1:84845923-84845942 Msa0382350:CDS 45.0%
AAGGTAGGCACGGTGATAAT+TGG + chr3_1:84845938-84845957 Msa0382350:CDS 45.0%
GAAGCCATGTTATCTGAAGG+AGG - chr3_1:84846039-84846058 None:intergenic 45.0%
! ATTCCTTGGGAGTGCATATC+TGG - chr3_1:84846099-84846118 None:intergenic 45.0%
CCCATACAAATGAAGCATGC+TGG + chr3_1:84846312-84846331 Msa0382350:CDS 45.0%
AAGACATACTCCAGTCAGCA+TGG + chr3_1:84846627-84846646 Msa0382350:intron 45.0%
AAGGACATCGAAAGTTACGG+TGG - chr3_1:84846807-84846826 None:intergenic 45.0%
ATGCGATAATTACTCCGACG+GGG + chr3_1:84847078-84847097 Msa0382350:CDS 45.0%
ATCTTTCGTTCTGACAGCAG+GGG - chr3_1:84847467-84847486 None:intergenic 45.0%
! TTGGTAGCAACAATCCCTTC+AGG - chr3_1:84847498-84847517 None:intergenic 45.0%
!!! TAAATAAAAATGATTAATTT+TGG - chr3_1:84842938-84842957 None:intergenic 5.0%
CACGCATTCCGATGGGAAAA+CGG - chr3_1:84843058-84843077 None:intergenic 50.0%
CGACGATCCAACTTGTCTCA+TGG + chr3_1:84843091-84843110 Msa0382350:CDS 50.0%
ACTAGATCCGAATCTGACCG+TGG - chr3_1:84843148-84843167 None:intergenic 50.0%
TGTTAATCCTCCTGCTCTCG+AGG + chr3_1:84843832-84843851 Msa0382350:intron 50.0%
GTTAATCCTCCTGCTCTCGA+GGG + chr3_1:84843833-84843852 Msa0382350:intron 50.0%
ATTCCGGAGTTTAGTCAGGG+AGG + chr3_1:84843887-84843906 Msa0382350:intron 50.0%
TTCCGCCTGTGAATCAAGCT+CGG + chr3_1:84843924-84843943 Msa0382350:intron 50.0%
AGAACCCGAGCTTGATTCAC+AGG - chr3_1:84843932-84843951 None:intergenic 50.0%
CTCGAATGATTCCTCCTAGG+GGG + chr3_1:84843952-84843971 Msa0382350:intron 50.0%
TCGAATGATTCCTCCTAGGG+GGG + chr3_1:84843953-84843972 Msa0382350:intron 50.0%
TGATGTGCACATGCCTGACA+TGG + chr3_1:84844282-84844301 Msa0382350:CDS 50.0%
! CCCACTTACTTATGACGGGA+AGG - chr3_1:84844348-84844367 None:intergenic 50.0%
GCAGATAATCACAGGCACCA+TGG - chr3_1:84844543-84844562 None:intergenic 50.0%
GAGGCTTCTTCTGAGCTGAT+GGG - chr3_1:84844807-84844826 None:intergenic 50.0%
CATCAGCTCAGAAGAAGCCT+CGG + chr3_1:84844806-84844825 Msa0382350:CDS 50.0%
ATCAGCTCAGAAGAAGCCTC+GGG + chr3_1:84844807-84844826 Msa0382350:CDS 50.0%
! AGAAGAAGCCTCGGGTTGTT+TGG + chr3_1:84844815-84844834 Msa0382350:CDS 50.0%
! CTGCCACCATACTAGCTTGT+TGG - chr3_1:84845375-84845394 None:intergenic 50.0%
CTAGTATGGTGGCAGCCTTA+GGG + chr3_1:84845380-84845399 Msa0382350:CDS 50.0%
CCATGCCCGTTAAGACTAGT+TGG - chr3_1:84845508-84845527 None:intergenic 50.0%
!! CCAACTAGTCTTAACGGGCA+TGG + chr3_1:84845505-84845524 Msa0382350:CDS 50.0%
! CGGGCATGGATTTTCTCCTT+CGG + chr3_1:84845519-84845538 Msa0382350:CDS 50.0%
! GGGCATGGATTTTCTCCTTC+GGG + chr3_1:84845520-84845539 Msa0382350:CDS 50.0%
! GGCATGGATTTTCTCCTTCG+GGG + chr3_1:84845521-84845540 Msa0382350:CDS 50.0%
TAACGGGAGTTATGGCTGAC+TGG - chr3_1:84845606-84845625 None:intergenic 50.0%
CAGGGAATGCCAATGTCCAT+AGG + chr3_1:84845640-84845659 Msa0382350:CDS 50.0%
CAAAACTTGGCCGTTGATCC+GGG - chr3_1:84845756-84845775 None:intergenic 50.0%
GCAAAACTTGGCCGTTGATC+CGG - chr3_1:84845757-84845776 None:intergenic 50.0%
ACTTGGGGGATGAGAACTAG+AGG - chr3_1:84845782-84845801 None:intergenic 50.0%
AGTTCTCATCCCCCAAGTCT+CGG + chr3_1:84845784-84845803 Msa0382350:CDS 50.0%
CACCCTGAAAGAAAACACGG+AGG + chr3_1:84845838-84845857 Msa0382350:CDS 50.0%
ATGCTGGATCAAGGTAGGCA+CGG + chr3_1:84845928-84845947 Msa0382350:CDS 50.0%
TCAAGCGACGTACCGTTATC+TGG + chr3_1:84845961-84845980 Msa0382350:CDS 50.0%
ATATCTGGCAACGAACCACC+AGG - chr3_1:84846084-84846103 None:intergenic 50.0%
TTGCCAGATATGCACTCCCA+AGG + chr3_1:84846093-84846112 Msa0382350:CDS 50.0%
CGGTCTTCCCATCCTTGAAA+TGG - chr3_1:84846162-84846181 None:intergenic 50.0%
AGGATGGGAAGACCGTAATC+AGG + chr3_1:84846167-84846186 Msa0382350:CDS 50.0%
GGAAAAACGGCACCGTTAAC+TGG - chr3_1:84846243-84846262 None:intergenic 50.0%
TGTCTGGCCTGGTGGAAAAA+CGG - chr3_1:84846256-84846275 None:intergenic 50.0%
AGGTGGAGCTAGTTGTTGTC+TGG - chr3_1:84846272-84846291 None:intergenic 50.0%
GACAACAACTAGCTCCACCT+TGG + chr3_1:84846272-84846291 Msa0382350:CDS 50.0%
GCTCCTGCATGTCATGAACA+TGG - chr3_1:84847024-84847043 None:intergenic 50.0%
CTGTCACAAAGATACCCCGT+CGG - chr3_1:84847095-84847114 None:intergenic 50.0%
TAGCATGTGTCCATGACAGG+AGG - chr3_1:84847179-84847198 None:intergenic 50.0%
! TCCGGTGACCGTTTTCCCAT+CGG + chr3_1:84843047-84843066 Msa0382350:CDS 55.0%
TCCGATGGGAAAACGGTCAC+CGG - chr3_1:84843051-84843070 None:intergenic 55.0%
GCGAGAACACGCATTCCGAT+GGG - chr3_1:84843065-84843084 None:intergenic 55.0%
GGGGAGGCCTCCTAATATTC+CGG + chr3_1:84843871-84843890 Msa0382350:intron 55.0%
TCCGCCTGTGAATCAAGCTC+GGG + chr3_1:84843925-84843944 Msa0382350:intron 55.0%
ACCCGAGCTTGATTCACAGG+CGG - chr3_1:84843929-84843948 None:intergenic 55.0%
GTGCACATGCCTGACATGGA+TGG + chr3_1:84844286-84844305 Msa0382350:CDS 55.0%
CGAGGCTTCTTCTGAGCTGA+TGG - chr3_1:84844808-84844827 None:intergenic 55.0%
TCCACAGACCAAACAACCCG+AGG - chr3_1:84844826-84844845 None:intergenic 55.0%
GCTAGTATGGTGGCAGCCTT+AGG + chr3_1:84845379-84845398 Msa0382350:CDS 55.0%
TCCTTCGGGGCTTCTTCAGT+TGG + chr3_1:84845534-84845553 Msa0382350:CDS 55.0%
CCTTCGGGGCTTCTTCAGTT+GGG + chr3_1:84845535-84845554 Msa0382350:CDS 55.0%
TGGGGGATGAGAACTAGAGG+TGG - chr3_1:84845779-84845798 None:intergenic 55.0%
GGCTTCTTTGCCCTTGCAAG+CGG + chr3_1:84846053-84846072 Msa0382350:CDS 55.0%
GCTTCTTTGCCCTTGCAAGC+GGG + chr3_1:84846054-84846073 Msa0382350:CDS 55.0%
CTTCTTTGCCCTTGCAAGCG+GGG + chr3_1:84846055-84846074 Msa0382350:CDS 55.0%
!!! AACGGTGCCGTTTTTCCACC+AGG + chr3_1:84846246-84846265 Msa0382350:CDS 55.0%
CTAGTTGTTGTCTGGCCTGG+TGG - chr3_1:84846264-84846283 None:intergenic 55.0%
GAGCTAGTTGTTGTCTGGCC+TGG - chr3_1:84846267-84846286 None:intergenic 55.0%
! GGCGAGTTCAATGATGGGAC+AGG + chr3_1:84846434-84846453 Msa0382350:CDS 55.0%
! CGACGGGGTATCTTTGTGAC+AGG + chr3_1:84847093-84847112 Msa0382350:exon 55.0%
GGCGAGAACACGCATTCCGA+TGG - chr3_1:84843066-84843085 None:intergenic 60.0%
ATCCTCCTGCTCTCGAGGGA+AGG + chr3_1:84843837-84843856 Msa0382350:intron 60.0%
GAGGGAAGGACCCCTCTCAA+GGG + chr3_1:84843851-84843870 Msa0382350:intron 60.0%
AGGGAAGGACCCCTCTCAAG+GGG + chr3_1:84843852-84843871 Msa0382350:intron 60.0%
TAGGAGGCCTCCCCTTGAGA+GGG - chr3_1:84843865-84843884 None:intergenic 60.0%
TTAGGAGGCCTCCCCTTGAG+AGG - chr3_1:84843866-84843885 None:intergenic 60.0%
AGAGGTTAAGGAGCCCCCCT+AGG - chr3_1:84843969-84843988 None:intergenic 60.0%
!! GGCAGTGGACTAAGATCCGC+AGG + chr3_1:84844682-84844701 Msa0382350:CDS 60.0%
! GCCTCGGGTTGTTTGGTCTG+TGG + chr3_1:84844822-84844841 Msa0382350:CDS 60.0%
GAACGTGGCAAGCCATCTCC+AGG + chr3_1:84845224-84845243 Msa0382350:CDS 60.0%
CCCAACTGAAGAAGCCCCGA+AGG - chr3_1:84845538-84845557 None:intergenic 60.0%
CCAGGATACCCCGCTTGCAA+GGG - chr3_1:84846066-84846085 None:intergenic 60.0%
ACCAGGATACCCCGCTTGCA+AGG - chr3_1:84846067-84846086 None:intergenic 60.0%
! TTGCAAGCGGGGTATCCTGG+TGG + chr3_1:84846066-84846085 Msa0382350:CDS 60.0%
GTCCTTCCCTCGAGAGCAGG+AGG - chr3_1:84843842-84843861 None:intergenic 65.0%
CGAGGGAAGGACCCCTCTCA+AGG + chr3_1:84843850-84843869 Msa0382350:intron 65.0%
GAAGGACCCCTCTCAAGGGG+AGG + chr3_1:84843855-84843874 Msa0382350:intron 65.0%
AGGAGGCCTCCCCTTGAGAG+GGG - chr3_1:84843864-84843883 None:intergenic 65.0%
GGTTAAGGAGCCCCCCTAGG+AGG - chr3_1:84843966-84843985 None:intergenic 65.0%
! CCCTTGCAAGCGGGGTATCC+TGG + chr3_1:84846063-84846082 Msa0382350:CDS 65.0%
GGGGTCCTTCCCTCGAGAGC+AGG - chr3_1:84843845-84843864 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 84842899 84847560 84842899 ID=Msa0382350;Name=Msa0382350
chr3_1 mRNA 84842899 84847560 84842899 ID=Msa0382350-mRNA-1;Parent=Msa0382350;Name=Msa0382350-mRNA-1;_AED=0.05;_eAED=0.05;_QI=139|1|1|1|1|1|6|449|645
chr3_1 exon 84842899 84843149 84842899 ID=Msa0382350-mRNA-1:exon:22144;Parent=Msa0382350-mRNA-1
chr3_1 exon 84844206 84844358 84844206 ID=Msa0382350-mRNA-1:exon:22145;Parent=Msa0382350-mRNA-1
chr3_1 exon 84844494 84844892 84844494 ID=Msa0382350-mRNA-1:exon:22146;Parent=Msa0382350-mRNA-1
chr3_1 exon 84845169 84845245 84845169 ID=Msa0382350-mRNA-1:exon:22147;Parent=Msa0382350-mRNA-1
chr3_1 exon 84845331 84846455 84845331 ID=Msa0382350-mRNA-1:exon:22148;Parent=Msa0382350-mRNA-1
chr3_1 exon 84847040 84847560 84847040 ID=Msa0382350-mRNA-1:exon:22149;Parent=Msa0382350-mRNA-1
chr3_1 five_prime_UTR 84842899 84843037 84842899 ID=Msa0382350-mRNA-1:five_prime_utr;Parent=Msa0382350-mRNA-1
chr3_1 CDS 84843038 84843149 84843038 ID=Msa0382350-mRNA-1:cds;Parent=Msa0382350-mRNA-1
chr3_1 CDS 84844206 84844358 84844206 ID=Msa0382350-mRNA-1:cds;Parent=Msa0382350-mRNA-1
chr3_1 CDS 84844494 84844892 84844494 ID=Msa0382350-mRNA-1:cds;Parent=Msa0382350-mRNA-1
chr3_1 CDS 84845169 84845245 84845169 ID=Msa0382350-mRNA-1:cds;Parent=Msa0382350-mRNA-1
chr3_1 CDS 84845331 84846455 84845331 ID=Msa0382350-mRNA-1:cds;Parent=Msa0382350-mRNA-1
chr3_1 CDS 84847040 84847111 84847040 ID=Msa0382350-mRNA-1:cds;Parent=Msa0382350-mRNA-1
chr3_1 three_prime_UTR 84847112 84847560 84847112 ID=Msa0382350-mRNA-1:three_prime_utr;Parent=Msa0382350-mRNA-1
Gene Sequence

>Msa0382350

ATGGATGATTCCGGTGACCGTTTTCCCATCGGAATGCGTGTTCTCGCCGTTGACGACGATCCAACTTGTCTCATGGTTTTGGAAACTCTTCTCCGTAGATGTCAATACCACGTAACCACAACTAGTCAAGCAATAACAGCGTTGACCATGTTGAGAGAAAACAAAGACAAGTTTGACCTGGTAATCAGTGATGTGCACATGCCTGACATGGATGGATTTAAGCTGCTTGAACTTGTGGGACTTGAAATGGACCTTCCCGTCATAATGTTGTCTGCATATGGTGATACAAAGCTGGTGATGAAAGGAATTTCCCATGGTGCCTGTGATTATCTGCTGAAACCTGTGAGATTAGAGGAGCTAAAGAACATTTGGCAGCATGTAATTAGGAAGAAGAAGTCTGATCCAAAGGAGAAAAACAAAACCAGTAAACCAGACAAAACTACTTCTGATAGTGGCAGTGGACTAAGATCCGCAGGAGCAGAAAATTCAGATGAAAATGGAAAGCTGACTAAGAAAAGAAAGGATCAGGATGAAGACGAAGATGAGGATAAAGAGAATGGTAATGACAACGAGGACCCATCAGCTCAGAAGAAGCCTCGGGTTGTTTGGTCTGTGGAGCTGCACCGCAAGTTTGTTGCTGCTGTTAATCAGTTAGGCATTGACAAGGCTGTGCCCAAAAAAATTCTTGATATGATGAATGTCGAAAATATCACAAGGGAGAACGTGGCAAGCCATCTCCAGAAGTATAGACTTTATCTGAAAAGAATTAGCTGTGTTGCAAACCAACAAGCTAGTATGGTGGCAGCCTTAGGGAGTGCAGATCAATCTTATTTGAGAATGGGTGGTTCTGGACATTTTCACAATAATGCTTTCAGATCCTTTTCACCTAGTGGGATAATTGGTAATCTGAACACTCCAACTAGTCTTAACGGGCATGGATTTTCTCCTTCGGGGCTTCTTCAGTTGGGCCAATCACGTAATTTAAACAATTCTTCCAATGATCAACTTAAATTCCAGTCAGCCATAACTCCCGTTAATCAGAATATTCTTCAGGGAATGCCAATGTCCATAGGGTTTGATCACTTGCAAAACAGCAAGGGTGTTATCTCTGTTCAAAACCTGAATACTGATGTGAAAACAACTTTTCCCATCCCAAATAAATTCCCGGATCAACGGCCAAGTTTTGCCACCTCTAGTTCTCATCCCCCAAGTCTCGGTATCTCAAACAATGGCTTGATGTCGGATACGCACCCTGAAAGAAAACACGGAGGTATAGGAATAGGATATGGAAGTTCATCTTCTTCAGTAGCCTCTCAACATTCAGAATTTTCTTTCTCTATGCTGGATCAAGGTAGGCACGGTGATAATTGGTCAAGCGACGTACCGTTATCTGGAATCCAAACAAATTCTTTCTCTTCAAGTGAATGTTTTAGACAGACAGCTGTTCCTCCTTCAGATAACATGGCTTCTTTGCCCTTGCAAGCGGGGTATCCTGGTGGTTCGTTGCCAGATATGCACTCCCAAGGAATGATTTTTACTAATTCACCTGAGTATATAAACGGTAATTTGCCATTTCAAGGATGGGAAGACCGTAATCAGGATGCTACTTACCACTCAAATGTTACTTGTGGATCAATGAACTCTCTTGCTCCAGTTAACGGTGCCGTTTTTCCACCAGGCCAGACAACAACTAGCTCCACCTTGGATACTAAATTTTTTAATCCCATACAAATGAAGCATGCTGGATTTGCCGAGTTAACTGAATGCAGCTCATCAAGACAATCTCCAGCTAATATCATAAGCCAGCAGAAGTTTTCTAATAATCTTGGTTCACTGGAATACTTGGCGAGTTCAATGATGGGACAGGAGCAAGATAAGATGAAATTATTGGGTGGAGACTTCATATGCGATAATTACTCCGACGGGGTATCTTTGTGA
Protein sequence

>Msa0382350

MDDSGDRFPIGMRVLAVDDDPTCLMVLETLLRRCQYHVTTTSQAITALTMLRENKDKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAYGDTKLVMKGISHGACDYLLKPVRLEELKNIWQHVIRKKKSDPKEKNKTSKPDKTTSDSGSGLRSAGAENSDENGKLTKKRKDQDEDEDEDKENGNDNEDPSAQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDMMNVENITRENVASHLQKYRLYLKRISCVANQQASMVAALGSADQSYLRMGGSGHFHNNAFRSFSPSGIIGNLNTPTSLNGHGFSPSGLLQLGQSRNLNNSSNDQLKFQSAITPVNQNILQGMPMSIGFDHLQNSKGVISVQNLNTDVKTTFPIPNKFPDQRPSFATSSSHPPSLGISNNGLMSDTHPERKHGGIGIGYGSSSSSVASQHSEFSFSMLDQGRHGDNWSSDVPLSGIQTNSFSSSECFRQTAVPPSDNMASLPLQAGYPGGSLPDMHSQGMIFTNSPEYINGNLPFQGWEDRNQDATYHSNVTCGSMNSLAPVNGAVFPPGQTTTSSTLDTKFFNPIQMKHAGFAELTECSSSRQSPANIISQQKFSNNLGSLEYLASSMMGQEQDKMKLLGGDFICDNYSDGVSL*