Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382450 | XP_003603300.1 | 90.286 | 175 | 17 | 0 | 1 | 175 | 1 | 175 | 2.78e-115 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382450 | sp|Q9SAH7|WRK40_ARATH | 47.541 | 183 | 79 | 6 | 4 | 175 | 7 | 183 | 2.12e-42 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382450 | G7J9V1 | 90.286 | 175 | 17 | 0 | 1 | 175 | 1 | 175 | 1.33e-115 | 339 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0382450 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0382450 | Msa1374740 | 0.945737 | 1.741315e-104 | -8.615850e-47 |
| Msa0382450 | Msa1463200 | 0.985376 | 2.252264e-163 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382450 | MtrunA17_Chr3g0136961 | 90.286 | 175 | 17 | 0 | 1 | 175 | 1 | 175 | 2.56e-119 | 339 |
| Msa0382450 | MtrunA17_Chr1g0150281 | 59.459 | 185 | 57 | 5 | 1 | 175 | 1 | 177 | 4.80e-66 | 203 |
| Msa0382450 | MtrunA17_Chr2g0333851 | 45.161 | 155 | 71 | 2 | 29 | 175 | 58 | 206 | 2.57e-38 | 133 |
| Msa0382450 | MtrunA17_Chr4g0001361 | 41.206 | 199 | 82 | 4 | 6 | 175 | 7 | 199 | 2.01e-34 | 123 |
| Msa0382450 | MtrunA17_Chr1g0150271 | 39.726 | 146 | 63 | 3 | 33 | 175 | 15 | 138 | 1.68e-23 | 93.2 |
| Msa0382450 | MtrunA17_Chr4g0051181 | 42.857 | 91 | 42 | 3 | 85 | 175 | 200 | 280 | 1.28e-16 | 76.6 |
| Msa0382450 | MtrunA17_Chr3g0099641 | 25.751 | 233 | 112 | 6 | 1 | 175 | 59 | 288 | 1.06e-15 | 73.9 |
| Msa0382450 | MtrunA17_Chr4g0075201 | 28.729 | 181 | 94 | 5 | 30 | 175 | 124 | 304 | 3.54e-15 | 72.4 |
| Msa0382450 | MtrunA17_Chr2g0288871 | 53.333 | 60 | 23 | 2 | 116 | 175 | 288 | 342 | 1.68e-14 | 70.5 |
| Msa0382450 | MtrunA17_Chr2g0322391 | 51.786 | 56 | 25 | 1 | 120 | 175 | 333 | 386 | 4.59e-14 | 69.3 |
| Msa0382450 | MtrunA17_Chr7g0270831 | 50.943 | 53 | 26 | 0 | 123 | 175 | 201 | 253 | 6.22e-14 | 68.6 |
| Msa0382450 | MtrunA17_Chr7g0216891 | 61.538 | 39 | 15 | 0 | 137 | 175 | 218 | 256 | 8.42e-14 | 68.6 |
| Msa0382450 | MtrunA17_Chr4g0060271 | 61.538 | 39 | 15 | 0 | 137 | 175 | 254 | 292 | 8.84e-14 | 68.6 |
| Msa0382450 | MtrunA17_Chr5g0447701 | 57.407 | 54 | 20 | 2 | 122 | 175 | 238 | 288 | 2.39e-13 | 67.0 |
| Msa0382450 | MtrunA17_Chr4g0025051 | 50.000 | 54 | 27 | 0 | 122 | 175 | 319 | 372 | 3.62e-13 | 66.6 |
| Msa0382450 | MtrunA17_Chr5g0445311 | 66.667 | 39 | 12 | 1 | 137 | 175 | 363 | 400 | 7.92e-13 | 65.5 |
| Msa0382450 | MtrunA17_Chr3g0106491 | 53.571 | 56 | 23 | 3 | 120 | 175 | 349 | 401 | 8.64e-13 | 65.5 |
| Msa0382450 | MtrunA17_Chr3g0101131 | 66.667 | 39 | 12 | 1 | 137 | 175 | 414 | 451 | 1.29e-12 | 65.1 |
| Msa0382450 | MtrunA17_Chr2g0302391 | 48.214 | 56 | 27 | 1 | 120 | 175 | 195 | 248 | 1.53e-12 | 64.7 |
| Msa0382450 | MtrunA17_Chr5g0418191 | 50.000 | 66 | 27 | 4 | 110 | 175 | 297 | 356 | 2.89e-12 | 63.9 |
| Msa0382450 | MtrunA17_Chr4g0042831 | 47.692 | 65 | 28 | 4 | 111 | 175 | 256 | 314 | 4.37e-12 | 63.2 |
| Msa0382450 | MtrunA17_Chr5g0432161 | 51.786 | 56 | 24 | 3 | 120 | 175 | 405 | 457 | 9.12e-12 | 62.8 |
| Msa0382450 | MtrunA17_Chr4g0025061 | 47.273 | 55 | 29 | 0 | 121 | 175 | 343 | 397 | 1.01e-11 | 62.4 |
| Msa0382450 | MtrunA17_Chr7g0249311 | 41.250 | 80 | 41 | 3 | 99 | 175 | 352 | 428 | 1.09e-11 | 62.4 |
| Msa0382450 | MtrunA17_Chr7g0249301 | 50.000 | 56 | 25 | 2 | 120 | 175 | 276 | 328 | 1.55e-11 | 61.6 |
| Msa0382450 | MtrunA17_Chr1g0150801 | 56.410 | 39 | 16 | 1 | 137 | 175 | 101 | 138 | 4.25e-11 | 58.5 |
| Msa0382450 | MtrunA17_Chr3g0079691 | 61.538 | 39 | 14 | 1 | 137 | 175 | 494 | 531 | 5.09e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0382450 | AT1G80840.1 | 47.541 | 183 | 79 | 6 | 4 | 175 | 7 | 183 | 2.16e-43 | 146 |
| Msa0382450 | AT4G31800.3 | 39.904 | 208 | 88 | 5 | 6 | 176 | 7 | 214 | 3.53e-35 | 123 |
| Msa0382450 | AT4G31800.1 | 40.097 | 207 | 87 | 5 | 6 | 175 | 7 | 213 | 6.74e-35 | 124 |
| Msa0382450 | AT2G25000.2 | 43.137 | 153 | 68 | 3 | 29 | 175 | 1 | 140 | 3.25e-33 | 118 |
| Msa0382450 | AT2G25000.4 | 43.137 | 153 | 68 | 3 | 29 | 175 | 1 | 140 | 3.25e-33 | 118 |
| Msa0382450 | AT2G25000.1 | 40.782 | 179 | 75 | 5 | 15 | 175 | 18 | 183 | 5.01e-33 | 119 |
| Msa0382450 | AT2G25000.3 | 43.137 | 153 | 68 | 3 | 29 | 175 | 23 | 162 | 6.42e-33 | 118 |
| Msa0382450 | AT4G31800.2 | 41.497 | 147 | 67 | 3 | 48 | 175 | 2 | 148 | 9.04e-27 | 102 |
| Msa0382450 | AT1G62300.1 | 27.897 | 233 | 105 | 6 | 4 | 175 | 119 | 349 | 1.92e-17 | 79.3 |
| Msa0382450 | AT1G68150.1 | 29.444 | 180 | 90 | 7 | 28 | 175 | 98 | 272 | 3.27e-15 | 72.8 |
| Msa0382450 | AT4G01720.1 | 29.379 | 177 | 86 | 6 | 33 | 175 | 105 | 276 | 4.62e-15 | 72.4 |
| Msa0382450 | AT5G15130.1 | 64.103 | 39 | 14 | 0 | 137 | 175 | 226 | 264 | 1.85e-14 | 70.9 |
| Msa0382450 | AT5G15130.2 | 44.156 | 77 | 38 | 2 | 99 | 175 | 151 | 222 | 1.92e-14 | 70.9 |
| Msa0382450 | AT4G22070.4 | 51.786 | 56 | 25 | 1 | 120 | 175 | 281 | 334 | 2.25e-14 | 70.5 |
| Msa0382450 | AT4G22070.3 | 51.786 | 56 | 25 | 1 | 120 | 175 | 281 | 334 | 2.25e-14 | 70.5 |
| Msa0382450 | AT4G22070.2 | 51.786 | 56 | 25 | 1 | 120 | 175 | 281 | 334 | 2.25e-14 | 70.5 |
| Msa0382450 | AT4G22070.1 | 51.786 | 56 | 25 | 1 | 120 | 175 | 281 | 334 | 2.25e-14 | 70.5 |
| Msa0382450 | AT4G04450.2 | 51.786 | 56 | 25 | 1 | 120 | 175 | 182 | 235 | 5.07e-14 | 69.3 |
| Msa0382450 | AT4G04450.1 | 51.786 | 56 | 25 | 1 | 120 | 175 | 276 | 329 | 6.08e-14 | 69.3 |
| Msa0382450 | AT1G69810.1 | 39.706 | 68 | 39 | 1 | 108 | 175 | 175 | 240 | 1.13e-12 | 65.5 |
| Msa0382450 | AT1G69810.2 | 39.706 | 68 | 39 | 1 | 108 | 175 | 117 | 182 | 1.35e-12 | 65.1 |
| Msa0382450 | AT1G18860.1 | 58.974 | 39 | 16 | 0 | 137 | 175 | 238 | 276 | 1.52e-12 | 65.1 |
| Msa0382450 | AT5G56270.1 | 53.571 | 56 | 23 | 3 | 120 | 175 | 471 | 523 | 2.64e-12 | 64.7 |
| Msa0382450 | AT5G07100.2 | 41.346 | 104 | 47 | 6 | 77 | 175 | 83 | 177 | 3.21e-12 | 62.8 |
| Msa0382450 | AT5G07100.4 | 41.346 | 104 | 47 | 6 | 77 | 175 | 83 | 177 | 3.21e-12 | 62.8 |
| Msa0382450 | AT5G07100.5 | 41.346 | 104 | 47 | 6 | 77 | 175 | 83 | 177 | 3.21e-12 | 62.8 |
| Msa0382450 | AT5G07100.3 | 41.346 | 104 | 47 | 6 | 77 | 175 | 83 | 177 | 3.21e-12 | 62.8 |
| Msa0382450 | AT4G26640.5 | 66.667 | 39 | 12 | 1 | 137 | 175 | 204 | 241 | 3.22e-12 | 63.9 |
| Msa0382450 | AT4G26640.6 | 66.667 | 39 | 12 | 1 | 137 | 175 | 204 | 241 | 3.22e-12 | 63.9 |
| Msa0382450 | AT4G26640.4 | 66.667 | 39 | 12 | 1 | 137 | 175 | 204 | 241 | 3.22e-12 | 63.9 |
| Msa0382450 | AT4G26640.3 | 66.667 | 39 | 12 | 1 | 137 | 175 | 204 | 241 | 3.22e-12 | 63.9 |
| Msa0382450 | AT4G26640.1 | 66.667 | 39 | 12 | 1 | 137 | 175 | 308 | 345 | 3.40e-12 | 64.3 |
| Msa0382450 | AT4G26640.2 | 66.667 | 39 | 12 | 1 | 137 | 175 | 380 | 417 | 3.60e-12 | 64.3 |
| Msa0382450 | AT4G26640.7 | 66.667 | 39 | 12 | 1 | 137 | 175 | 340 | 377 | 3.63e-12 | 63.9 |
| Msa0382450 | AT1G13960.2 | 50.794 | 63 | 25 | 4 | 113 | 175 | 236 | 292 | 4.07e-12 | 63.9 |
| Msa0382450 | AT1G13960.1 | 50.794 | 63 | 25 | 4 | 113 | 175 | 389 | 445 | 4.92e-12 | 63.5 |
| Msa0382450 | AT5G07100.1 | 41.346 | 104 | 47 | 6 | 77 | 175 | 176 | 270 | 6.47e-12 | 62.8 |
| Msa0382450 | AT2G04880.1 | 64.103 | 39 | 13 | 1 | 137 | 175 | 306 | 343 | 6.84e-12 | 63.2 |
| Msa0382450 | AT2G04880.2 | 64.103 | 39 | 13 | 1 | 137 | 175 | 282 | 319 | 7.13e-12 | 63.2 |
| Msa0382450 | AT2G38470.1 | 61.538 | 39 | 14 | 1 | 137 | 175 | 361 | 398 | 3.00e-11 | 61.6 |
| Msa0382450 | AT2G03340.1 | 49.206 | 63 | 26 | 4 | 113 | 175 | 395 | 451 | 4.30e-11 | 60.8 |
| Msa0382450 | AT4G26440.1 | 30.872 | 149 | 62 | 6 | 65 | 175 | 263 | 408 | 4.85e-11 | 60.8 |
| Msa0382450 | AT3G01080.1 | 49.206 | 63 | 26 | 4 | 113 | 175 | 286 | 342 | 8.27e-11 | 60.1 |
| Msa0382450 | AT3G01080.2 | 49.206 | 63 | 26 | 4 | 113 | 175 | 324 | 380 | 9.74e-11 | 60.1 |
Find 41 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTTCTCTTTCGCGATAT+TGG | 0.191286 | 3_1:-84999319 | None:intergenic |
| TCAGGTTGCTGATCAGGTTT+TGG | 0.288511 | 3_1:+84999159 | Msa0382450:intron |
| ATGAATTCAGGTTGCTGATC+AGG | 0.334261 | 3_1:+84999153 | Msa0382450:intron |
| TTCAAGTGCTCCTTTGCTCC+TGG | 0.357212 | 3_1:+84999703 | Msa0382450:CDS |
| GGATATCAGTGGAGAAAATA+TGG | 0.364647 | 3_1:+84999640 | Msa0382450:CDS |
| GCACATGTGGTTCAGTTTCT+CGG | 0.370673 | 3_1:-84999224 | None:intergenic |
| GAAAATTGTATCAATAGGTT+TGG | 0.376161 | 3_1:+84999352 | Msa0382450:CDS |
| ACCAATATCGCGAAAGAGAA+AGG | 0.387719 | 3_1:+84999318 | Msa0382450:CDS |
| GTGTTGAAAATTGTATCAAT+AGG | 0.392499 | 3_1:+84999347 | Msa0382450:CDS |
| ACCTAAACACTCTCCCTTCT+CGG | 0.392654 | 3_1:+84999009 | Msa0382450:CDS |
| CCCGAGAAGGGAGAGTGTTT+AGG | 0.410406 | 3_1:-84999010 | None:intergenic |
| TATATACTAACCGCACTAAC+AGG | 0.415297 | 3_1:-84999038 | None:intergenic |
| GTCTAAGTAGTGAGAATAAG+AGG | 0.450271 | 3_1:+84999197 | Msa0382450:CDS |
| CTAGAGATAATCCCTCTCCT+AGG | 0.467386 | 3_1:+84999674 | Msa0382450:CDS |
| CCTAAACACTCTCCCTTCTC+GGG | 0.479017 | 3_1:+84999010 | Msa0382450:CDS |
| AGAACTTACTAAGCTGGCAT+TGG | 0.495787 | 3_1:-84999482 | None:intergenic |
| CACAGGGCAGCCAGGAGCAA+AGG | 0.503671 | 3_1:-84999713 | None:intergenic |
| AATTGTAGAACTTACTAAGC+TGG | 0.507761 | 3_1:-84999488 | None:intergenic |
| TGTCTCCTCCTCAGTAGTAA+TGG | 0.551953 | 3_1:-84999398 | None:intergenic |
| GACCTCGCCGAGAGTTTCCA+AGG | 0.562692 | 3_1:+84999438 | Msa0382450:CDS |
| CTAACAGGTGTGTCCCGAGA+AGG | 0.571023 | 3_1:-84999023 | None:intergenic |
| GAGCACTTGAAGTAAGCCCT+AGG | 0.576521 | 3_1:-84999691 | None:intergenic |
| CAGTATAATTGTCGCACATG+TGG | 0.579804 | 3_1:-84999237 | None:intergenic |
| TAACAGGTGTGTCCCGAGAA+GGG | 0.581505 | 3_1:-84999022 | None:intergenic |
| ATCTGTACGCACAAGAACCT+TGG | 0.586094 | 3_1:-84999455 | None:intergenic |
| TAGAGATAATCCCTCTCCTA+GGG | 0.588394 | 3_1:+84999675 | Msa0382450:CDS |
| CTGTGTCAAGTTCTTCCACA+TGG | 0.593096 | 3_1:+84998959 | Msa0382450:exon |
| TTGAAGTAAGCCCTAGGAGA+GGG | 0.594565 | 3_1:-84999685 | None:intergenic |
| GTATTGAAGTATGTGAAGGA+TGG | 0.607747 | 3_1:+84999619 | Msa0382450:intron |
| TCGGGACACACCTGTTAGTG+CGG | 0.618406 | 3_1:+84999028 | Msa0382450:CDS |
| TTGGGTATTGAAGTATGTGA+AGG | 0.631029 | 3_1:+84999615 | Msa0382450:intron |
| CCACATGGAACCAACGTGTG+TGG | 0.633718 | 3_1:+84998974 | Msa0382450:exon |
| CTTGAAGTAAGCCCTAGGAG+AGG | 0.642278 | 3_1:-84999686 | None:intergenic |
| ACAAGAACCTTGGAAACTCT+CGG | 0.643388 | 3_1:-84999445 | None:intergenic |
| ATGTGAAGGATGGATATCAG+TGG | 0.648222 | 3_1:+84999629 | Msa0382450:CDS |
| CAGCACCATTACTACTGAGG+AGG | 0.656419 | 3_1:+84999393 | Msa0382450:CDS |
| AACCTTGGAAACTCTCGGCG+AGG | 0.657343 | 3_1:-84999440 | None:intergenic |
| CCACACACGTTGGTTCCATG+TGG | 0.660564 | 3_1:-84998974 | None:intergenic |
| CATGTGGAAGAACTTGACAC+AGG | 0.707976 | 3_1:-84998958 | None:intergenic |
| GAGCAGCACCATTACTACTG+AGG | 0.711173 | 3_1:+84999390 | Msa0382450:CDS |
| AGAGAAGTATCCACACACGT+TGG | 0.751057 | 3_1:-84998984 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATAAGTTAATTTTTGAATA+TGG | - | chr3_1:84999136-84999155 | None:intergenic | 15.0% |
| !! | AAAAATTAACTTATGAATTC+AGG | + | chr3_1:84999141-84999160 | Msa0382450:intron | 15.0% |
| !! | ATAATAAAGATATTAGTGTT+TGG | + | chr3_1:84999562-84999581 | Msa0382450:intron | 15.0% |
| !!! | CATAAGTTAATTTTTGAATA+TGG | - | chr3_1:84999136-84999155 | None:intergenic | 15.0% |
| !! | AAAAATTAACTTATGAATTC+AGG | + | chr3_1:84999141-84999160 | Msa0382450:intron | 15.0% |
| !! | ATAATAAAGATATTAGTGTT+TGG | + | chr3_1:84999562-84999581 | Msa0382450:intron | 15.0% |
| !! | ATATGGTATGTTATAATTCA+AGG | - | chr3_1:84999119-84999138 | None:intergenic | 20.0% |
| !!! | TGTTGTCTTGATTTAATTTT+TGG | + | chr3_1:84999533-84999552 | Msa0382450:intron | 20.0% |
| !! | ATATGGTATGTTATAATTCA+AGG | - | chr3_1:84999119-84999138 | None:intergenic | 20.0% |
| !!! | TGTTGTCTTGATTTAATTTT+TGG | + | chr3_1:84999533-84999552 | Msa0382450:intron | 20.0% |
| ! | TGTTATAATTCAAGGAAAAG+AGG | - | chr3_1:84999111-84999130 | None:intergenic | 25.0% |
| ! | GTGTTGAAAATTGTATCAAT+AGG | + | chr3_1:84999347-84999366 | Msa0382450:CDS | 25.0% |
| ! | GAAAATTGTATCAATAGGTT+TGG | + | chr3_1:84999352-84999371 | Msa0382450:CDS | 25.0% |
| !!! | TAAATACCTTCTTTTTCACA+GGG | - | chr3_1:84999732-84999751 | None:intergenic | 25.0% |
| !!! | TTAAATACCTTCTTTTTCAC+AGG | - | chr3_1:84999733-84999752 | None:intergenic | 25.0% |
| ! | TGTTATAATTCAAGGAAAAG+AGG | - | chr3_1:84999111-84999130 | None:intergenic | 25.0% |
| ! | GTGTTGAAAATTGTATCAAT+AGG | + | chr3_1:84999347-84999366 | Msa0382450:CDS | 25.0% |
| ! | GAAAATTGTATCAATAGGTT+TGG | + | chr3_1:84999352-84999371 | Msa0382450:CDS | 25.0% |
| !!! | TAAATACCTTCTTTTTCACA+GGG | - | chr3_1:84999732-84999751 | None:intergenic | 25.0% |
| !!! | TTAAATACCTTCTTTTTCAC+AGG | - | chr3_1:84999733-84999752 | None:intergenic | 25.0% |
| ! | GATACAATTTTCAACACTCT+CGG | - | chr3_1:84999344-84999363 | None:intergenic | 30.0% |
| AATTGTAGAACTTACTAAGC+TGG | - | chr3_1:84999491-84999510 | None:intergenic | 30.0% | |
| !! | TGAGATGCTGAATTTGTTTT+TGG | + | chr3_1:84999596-84999615 | Msa0382450:intron | 30.0% |
| !! | GAGATGCTGAATTTGTTTTT+GGG | + | chr3_1:84999597-84999616 | Msa0382450:intron | 30.0% |
| ! | GATACAATTTTCAACACTCT+CGG | - | chr3_1:84999344-84999363 | None:intergenic | 30.0% |
| AATTGTAGAACTTACTAAGC+TGG | - | chr3_1:84999491-84999510 | None:intergenic | 30.0% | |
| !! | TGAGATGCTGAATTTGTTTT+TGG | + | chr3_1:84999596-84999615 | Msa0382450:intron | 30.0% |
| !! | GAGATGCTGAATTTGTTTTT+GGG | + | chr3_1:84999597-84999616 | Msa0382450:intron | 30.0% |
| TATATACTAACCGCACTAAC+AGG | - | chr3_1:84999041-84999060 | None:intergenic | 35.0% | |
| GTCTAAGTAGTGAGAATAAG+AGG | + | chr3_1:84999197-84999216 | Msa0382450:CDS | 35.0% | |
| !! | TTGGGTATTGAAGTATGTGA+AGG | + | chr3_1:84999615-84999634 | Msa0382450:intron | 35.0% |
| GTATTGAAGTATGTGAAGGA+TGG | + | chr3_1:84999619-84999638 | Msa0382450:intron | 35.0% | |
| GGATATCAGTGGAGAAAATA+TGG | + | chr3_1:84999640-84999659 | Msa0382450:CDS | 35.0% | |
| TATATACTAACCGCACTAAC+AGG | - | chr3_1:84999041-84999060 | None:intergenic | 35.0% | |
| GTCTAAGTAGTGAGAATAAG+AGG | + | chr3_1:84999197-84999216 | Msa0382450:CDS | 35.0% | |
| !! | TTGGGTATTGAAGTATGTGA+AGG | + | chr3_1:84999615-84999634 | Msa0382450:intron | 35.0% |
| GTATTGAAGTATGTGAAGGA+TGG | + | chr3_1:84999619-84999638 | Msa0382450:intron | 35.0% | |
| GGATATCAGTGGAGAAAATA+TGG | + | chr3_1:84999640-84999659 | Msa0382450:CDS | 35.0% | |
| GAACTTGACACAGGCAAAAA+TGG | - | chr3_1:84998952-84998971 | None:intergenic | 40.0% | |
| !! | ATGAATTCAGGTTGCTGATC+AGG | + | chr3_1:84999153-84999172 | Msa0382450:intron | 40.0% |
| CAGTATAATTGTCGCACATG+TGG | - | chr3_1:84999240-84999259 | None:intergenic | 40.0% | |
| ACCAATATCGCGAAAGAGAA+AGG | + | chr3_1:84999318-84999337 | Msa0382450:CDS | 40.0% | |
| ACAAGAACCTTGGAAACTCT+CGG | - | chr3_1:84999448-84999467 | None:intergenic | 40.0% | |
| AGAACTTACTAAGCTGGCAT+TGG | - | chr3_1:84999485-84999504 | None:intergenic | 40.0% | |
| ATGTGAAGGATGGATATCAG+TGG | + | chr3_1:84999629-84999648 | Msa0382450:CDS | 40.0% | |
| TAGAGATAATCCCTCTCCTA+GGG | + | chr3_1:84999675-84999694 | Msa0382450:CDS | 40.0% | |
| GAACTTGACACAGGCAAAAA+TGG | - | chr3_1:84998952-84998971 | None:intergenic | 40.0% | |
| !! | ATGAATTCAGGTTGCTGATC+AGG | + | chr3_1:84999153-84999172 | Msa0382450:intron | 40.0% |
| CAGTATAATTGTCGCACATG+TGG | - | chr3_1:84999240-84999259 | None:intergenic | 40.0% | |
| ACCAATATCGCGAAAGAGAA+AGG | + | chr3_1:84999318-84999337 | Msa0382450:CDS | 40.0% | |
| ACAAGAACCTTGGAAACTCT+CGG | - | chr3_1:84999448-84999467 | None:intergenic | 40.0% | |
| AGAACTTACTAAGCTGGCAT+TGG | - | chr3_1:84999485-84999504 | None:intergenic | 40.0% | |
| ATGTGAAGGATGGATATCAG+TGG | + | chr3_1:84999629-84999648 | Msa0382450:CDS | 40.0% | |
| TAGAGATAATCCCTCTCCTA+GGG | + | chr3_1:84999675-84999694 | Msa0382450:CDS | 40.0% | |
| CATGTGGAAGAACTTGACAC+AGG | - | chr3_1:84998961-84998980 | None:intergenic | 45.0% | |
| CTGTGTCAAGTTCTTCCACA+TGG | + | chr3_1:84998959-84998978 | Msa0382450:exon | 45.0% | |
| !! | AGAGAAGTATCCACACACGT+TGG | - | chr3_1:84998987-84999006 | None:intergenic | 45.0% |
| ACCTAAACACTCTCCCTTCT+CGG | + | chr3_1:84999009-84999028 | Msa0382450:CDS | 45.0% | |
| !! | TCAGGTTGCTGATCAGGTTT+TGG | + | chr3_1:84999159-84999178 | Msa0382450:intron | 45.0% |
| GCACATGTGGTTCAGTTTCT+CGG | - | chr3_1:84999227-84999246 | None:intergenic | 45.0% | |
| GCCTTTCTCTTTCGCGATAT+TGG | - | chr3_1:84999322-84999341 | None:intergenic | 45.0% | |
| TGTCTCCTCCTCAGTAGTAA+TGG | - | chr3_1:84999401-84999420 | None:intergenic | 45.0% | |
| ATCTGTACGCACAAGAACCT+TGG | - | chr3_1:84999458-84999477 | None:intergenic | 45.0% | |
| CTAGAGATAATCCCTCTCCT+AGG | + | chr3_1:84999674-84999693 | Msa0382450:CDS | 45.0% | |
| TTGAAGTAAGCCCTAGGAGA+GGG | - | chr3_1:84999688-84999707 | None:intergenic | 45.0% | |
| CATGTGGAAGAACTTGACAC+AGG | - | chr3_1:84998961-84998980 | None:intergenic | 45.0% | |
| CTGTGTCAAGTTCTTCCACA+TGG | + | chr3_1:84998959-84998978 | Msa0382450:exon | 45.0% | |
| !! | AGAGAAGTATCCACACACGT+TGG | - | chr3_1:84998987-84999006 | None:intergenic | 45.0% |
| ACCTAAACACTCTCCCTTCT+CGG | + | chr3_1:84999009-84999028 | Msa0382450:CDS | 45.0% | |
| !! | TCAGGTTGCTGATCAGGTTT+TGG | + | chr3_1:84999159-84999178 | Msa0382450:intron | 45.0% |
| GCACATGTGGTTCAGTTTCT+CGG | - | chr3_1:84999227-84999246 | None:intergenic | 45.0% | |
| GCCTTTCTCTTTCGCGATAT+TGG | - | chr3_1:84999322-84999341 | None:intergenic | 45.0% | |
| TGTCTCCTCCTCAGTAGTAA+TGG | - | chr3_1:84999401-84999420 | None:intergenic | 45.0% | |
| ATCTGTACGCACAAGAACCT+TGG | - | chr3_1:84999458-84999477 | None:intergenic | 45.0% | |
| CTAGAGATAATCCCTCTCCT+AGG | + | chr3_1:84999674-84999693 | Msa0382450:CDS | 45.0% | |
| TTGAAGTAAGCCCTAGGAGA+GGG | - | chr3_1:84999688-84999707 | None:intergenic | 45.0% | |
| GACACAGGCAAAAATGGCTG+AGG | - | chr3_1:84998946-84998965 | None:intergenic | 50.0% | |
| CCTAAACACTCTCCCTTCTC+GGG | + | chr3_1:84999010-84999029 | Msa0382450:CDS | 50.0% | |
| TAACAGGTGTGTCCCGAGAA+GGG | - | chr3_1:84999025-84999044 | None:intergenic | 50.0% | |
| GAGCAGCACCATTACTACTG+AGG | + | chr3_1:84999390-84999409 | Msa0382450:CDS | 50.0% | |
| CAGCACCATTACTACTGAGG+AGG | + | chr3_1:84999393-84999412 | Msa0382450:CDS | 50.0% | |
| CTTGAAGTAAGCCCTAGGAG+AGG | - | chr3_1:84999689-84999708 | None:intergenic | 50.0% | |
| GAGCACTTGAAGTAAGCCCT+AGG | - | chr3_1:84999694-84999713 | None:intergenic | 50.0% | |
| TTCAAGTGCTCCTTTGCTCC+TGG | + | chr3_1:84999703-84999722 | Msa0382450:CDS | 50.0% | |
| !! | TTCTTTTTCACAGGGCAGCC+AGG | - | chr3_1:84999724-84999743 | None:intergenic | 50.0% |
| TGGCTGCCCTGTGAAAAAGA+AGG | + | chr3_1:84999723-84999742 | Msa0382450:CDS | 50.0% | |
| GACACAGGCAAAAATGGCTG+AGG | - | chr3_1:84998946-84998965 | None:intergenic | 50.0% | |
| CCTAAACACTCTCCCTTCTC+GGG | + | chr3_1:84999010-84999029 | Msa0382450:CDS | 50.0% | |
| TAACAGGTGTGTCCCGAGAA+GGG | - | chr3_1:84999025-84999044 | None:intergenic | 50.0% | |
| GAGCAGCACCATTACTACTG+AGG | + | chr3_1:84999390-84999409 | Msa0382450:CDS | 50.0% | |
| CAGCACCATTACTACTGAGG+AGG | + | chr3_1:84999393-84999412 | Msa0382450:CDS | 50.0% | |
| CTTGAAGTAAGCCCTAGGAG+AGG | - | chr3_1:84999689-84999708 | None:intergenic | 50.0% | |
| GAGCACTTGAAGTAAGCCCT+AGG | - | chr3_1:84999694-84999713 | None:intergenic | 50.0% | |
| TTCAAGTGCTCCTTTGCTCC+TGG | + | chr3_1:84999703-84999722 | Msa0382450:CDS | 50.0% | |
| !! | TTCTTTTTCACAGGGCAGCC+AGG | - | chr3_1:84999724-84999743 | None:intergenic | 50.0% |
| TGGCTGCCCTGTGAAAAAGA+AGG | + | chr3_1:84999723-84999742 | Msa0382450:CDS | 50.0% | |
| !! | CCACACACGTTGGTTCCATG+TGG | - | chr3_1:84998977-84998996 | None:intergenic | 55.0% |
| CCACATGGAACCAACGTGTG+TGG | + | chr3_1:84998974-84998993 | Msa0382450:exon | 55.0% | |
| !! | CCCGAGAAGGGAGAGTGTTT+AGG | - | chr3_1:84999013-84999032 | None:intergenic | 55.0% |
| CTAACAGGTGTGTCCCGAGA+AGG | - | chr3_1:84999026-84999045 | None:intergenic | 55.0% | |
| TCGGGACACACCTGTTAGTG+CGG | + | chr3_1:84999028-84999047 | Msa0382450:CDS | 55.0% | |
| AACCTTGGAAACTCTCGGCG+AGG | - | chr3_1:84999443-84999462 | None:intergenic | 55.0% | |
| !! | CCACACACGTTGGTTCCATG+TGG | - | chr3_1:84998977-84998996 | None:intergenic | 55.0% |
| CCACATGGAACCAACGTGTG+TGG | + | chr3_1:84998974-84998993 | Msa0382450:exon | 55.0% | |
| !! | CCCGAGAAGGGAGAGTGTTT+AGG | - | chr3_1:84999013-84999032 | None:intergenic | 55.0% |
| CTAACAGGTGTGTCCCGAGA+AGG | - | chr3_1:84999026-84999045 | None:intergenic | 55.0% | |
| TCGGGACACACCTGTTAGTG+CGG | + | chr3_1:84999028-84999047 | Msa0382450:CDS | 55.0% | |
| AACCTTGGAAACTCTCGGCG+AGG | - | chr3_1:84999443-84999462 | None:intergenic | 55.0% | |
| GACCTCGCCGAGAGTTTCCA+AGG | + | chr3_1:84999438-84999457 | Msa0382450:CDS | 60.0% | |
| GACCTCGCCGAGAGTTTCCA+AGG | + | chr3_1:84999438-84999457 | Msa0382450:CDS | 60.0% | |
| CACAGGGCAGCCAGGAGCAA+AGG | - | chr3_1:84999716-84999735 | None:intergenic | 65.0% | |
| CACAGGGCAGCCAGGAGCAA+AGG | - | chr3_1:84999716-84999735 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 84998933 | 84999756 | 84998933 | ID=Msa0382450;Name=Msa0382450 |
| chr3_1 | mRNA | 84998933 | 84999756 | 84998933 | ID=Msa0382450-mRNA-1;Parent=Msa0382450;Name=Msa0382450-mRNA-1;_AED=0.16;_eAED=0.16;_QI=45|1|0.66|1|1|1|3|0|177 |
| chr3_1 | exon | 84998933 | 84999049 | 84998933 | ID=Msa0382450-mRNA-1:exon:22240;Parent=Msa0382450-mRNA-1 |
| chr3_1 | exon | 84999163 | 84999495 | 84999163 | ID=Msa0382450-mRNA-1:exon:22241;Parent=Msa0382450-mRNA-1 |
| chr3_1 | exon | 84999628 | 84999756 | 84999628 | ID=Msa0382450-mRNA-1:exon:22242;Parent=Msa0382450-mRNA-1 |
| chr3_1 | five_prime_UTR | 84998933 | 84998977 | 84998933 | ID=Msa0382450-mRNA-1:five_prime_utr;Parent=Msa0382450-mRNA-1 |
| chr3_1 | CDS | 84998978 | 84999049 | 84998978 | ID=Msa0382450-mRNA-1:cds;Parent=Msa0382450-mRNA-1 |
| chr3_1 | CDS | 84999163 | 84999495 | 84999163 | ID=Msa0382450-mRNA-1:cds;Parent=Msa0382450-mRNA-1 |
| chr3_1 | CDS | 84999628 | 84999756 | 84999628 | ID=Msa0382450-mRNA-1:cds;Parent=Msa0382450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
