Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463200 | XP_003603300.1 | 90.286 | 175 | 17 | 0 | 18 | 192 | 1 | 175 | 8.21e-115 | 338 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463200 | sp|Q9SAH7|WRK40_ARATH | 46.995 | 183 | 80 | 6 | 21 | 192 | 7 | 183 | 1.89e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463200 | G7J9V1 | 90.286 | 175 | 17 | 0 | 18 | 192 | 1 | 175 | 3.92e-115 | 338 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1463200 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1374740 | Msa1463200 | 0.953479 | 2.503206e-111 | -8.615850e-47 |
| Msa0382450 | Msa1463200 | 0.985376 | 2.252264e-163 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463200 | MtrunA17_Chr3g0136961 | 90.286 | 175 | 17 | 0 | 18 | 192 | 1 | 175 | 7.55e-119 | 338 |
| Msa1463200 | MtrunA17_Chr1g0150281 | 59.459 | 185 | 57 | 5 | 18 | 192 | 1 | 177 | 7.24e-66 | 204 |
| Msa1463200 | MtrunA17_Chr2g0333851 | 45.161 | 155 | 71 | 2 | 46 | 192 | 58 | 206 | 3.82e-38 | 133 |
| Msa1463200 | MtrunA17_Chr4g0001361 | 41.206 | 199 | 82 | 4 | 23 | 192 | 7 | 199 | 3.64e-34 | 123 |
| Msa1463200 | MtrunA17_Chr1g0150271 | 66.102 | 59 | 20 | 0 | 134 | 192 | 80 | 138 | 2.87e-23 | 93.2 |
| Msa1463200 | MtrunA17_Chr2g0288871 | 31.000 | 200 | 74 | 7 | 50 | 192 | 150 | 342 | 1.41e-17 | 80.1 |
| Msa1463200 | MtrunA17_Chr4g0051181 | 42.857 | 91 | 42 | 3 | 102 | 192 | 200 | 280 | 2.14e-16 | 76.6 |
| Msa1463200 | MtrunA17_Chr3g0099641 | 25.210 | 238 | 117 | 6 | 13 | 192 | 54 | 288 | 3.97e-16 | 75.5 |
| Msa1463200 | MtrunA17_Chr4g0075201 | 28.729 | 181 | 94 | 5 | 47 | 192 | 124 | 304 | 4.16e-15 | 72.8 |
| Msa1463200 | MtrunA17_Chr2g0322391 | 51.786 | 56 | 25 | 1 | 137 | 192 | 333 | 386 | 6.71e-14 | 69.3 |
| Msa1463200 | MtrunA17_Chr7g0270831 | 28.916 | 166 | 88 | 5 | 46 | 192 | 99 | 253 | 8.05e-14 | 68.9 |
| Msa1463200 | MtrunA17_Chr7g0216891 | 61.538 | 39 | 15 | 0 | 154 | 192 | 218 | 256 | 1.35e-13 | 68.6 |
| Msa1463200 | MtrunA17_Chr4g0060271 | 61.538 | 39 | 15 | 0 | 154 | 192 | 254 | 292 | 1.38e-13 | 68.6 |
| Msa1463200 | MtrunA17_Chr5g0447701 | 57.407 | 54 | 20 | 2 | 139 | 192 | 238 | 288 | 3.37e-13 | 67.0 |
| Msa1463200 | MtrunA17_Chr4g0025051 | 50.000 | 54 | 27 | 0 | 139 | 192 | 319 | 372 | 6.27e-13 | 66.6 |
| Msa1463200 | MtrunA17_Chr5g0445311 | 66.667 | 39 | 12 | 1 | 154 | 192 | 363 | 400 | 9.30e-13 | 65.9 |
| Msa1463200 | MtrunA17_Chr3g0106491 | 53.571 | 56 | 23 | 3 | 137 | 192 | 349 | 401 | 1.00e-12 | 65.9 |
| Msa1463200 | MtrunA17_Chr3g0101131 | 66.667 | 39 | 12 | 1 | 154 | 192 | 414 | 451 | 1.59e-12 | 65.5 |
| Msa1463200 | MtrunA17_Chr2g0302391 | 48.214 | 56 | 27 | 1 | 137 | 192 | 195 | 248 | 2.54e-12 | 64.7 |
| Msa1463200 | MtrunA17_Chr5g0418191 | 50.000 | 66 | 27 | 4 | 127 | 192 | 297 | 356 | 4.27e-12 | 63.9 |
| Msa1463200 | MtrunA17_Chr4g0042831 | 47.692 | 65 | 28 | 4 | 128 | 192 | 256 | 314 | 6.34e-12 | 63.5 |
| Msa1463200 | MtrunA17_Chr5g0432161 | 51.786 | 56 | 24 | 3 | 137 | 192 | 405 | 457 | 1.05e-11 | 62.8 |
| Msa1463200 | MtrunA17_Chr7g0249311 | 41.250 | 80 | 41 | 3 | 116 | 192 | 352 | 428 | 1.23e-11 | 62.8 |
| Msa1463200 | MtrunA17_Chr4g0025061 | 47.273 | 55 | 29 | 0 | 138 | 192 | 343 | 397 | 1.48e-11 | 62.4 |
| Msa1463200 | MtrunA17_Chr7g0249301 | 50.000 | 56 | 25 | 2 | 137 | 192 | 276 | 328 | 2.14e-11 | 61.6 |
| Msa1463200 | MtrunA17_Chr1g0150801 | 56.410 | 39 | 16 | 1 | 154 | 192 | 101 | 138 | 4.85e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1463200 | AT1G80840.1 | 46.995 | 183 | 80 | 6 | 21 | 192 | 7 | 183 | 1.92e-43 | 147 |
| Msa1463200 | AT4G31800.3 | 39.904 | 208 | 88 | 5 | 23 | 193 | 7 | 214 | 3.28e-35 | 124 |
| Msa1463200 | AT4G31800.1 | 40.097 | 207 | 87 | 5 | 23 | 192 | 7 | 213 | 8.17e-35 | 125 |
| Msa1463200 | AT2G25000.2 | 43.137 | 153 | 68 | 3 | 46 | 192 | 1 | 140 | 6.49e-33 | 118 |
| Msa1463200 | AT2G25000.4 | 43.137 | 153 | 68 | 3 | 46 | 192 | 1 | 140 | 6.49e-33 | 118 |
| Msa1463200 | AT2G25000.1 | 40.782 | 179 | 75 | 5 | 32 | 192 | 18 | 183 | 1.09e-32 | 118 |
| Msa1463200 | AT2G25000.3 | 43.137 | 153 | 68 | 3 | 46 | 192 | 23 | 162 | 1.29e-32 | 117 |
| Msa1463200 | AT4G31800.2 | 41.497 | 147 | 67 | 3 | 65 | 192 | 2 | 148 | 1.29e-26 | 102 |
| Msa1463200 | AT1G62300.1 | 27.897 | 233 | 105 | 6 | 21 | 192 | 119 | 349 | 1.12e-17 | 80.5 |
| Msa1463200 | AT4G01720.1 | 29.379 | 177 | 86 | 6 | 50 | 192 | 105 | 276 | 2.48e-15 | 73.9 |
| Msa1463200 | AT1G68150.1 | 29.444 | 180 | 90 | 7 | 45 | 192 | 98 | 272 | 3.76e-15 | 73.2 |
| Msa1463200 | AT5G15130.1 | 64.103 | 39 | 14 | 0 | 154 | 192 | 226 | 264 | 2.87e-14 | 70.9 |
| Msa1463200 | AT5G15130.2 | 64.103 | 39 | 14 | 0 | 154 | 192 | 184 | 222 | 2.93e-14 | 70.9 |
| Msa1463200 | AT4G22070.4 | 51.786 | 56 | 25 | 1 | 137 | 192 | 281 | 334 | 3.49e-14 | 70.5 |
| Msa1463200 | AT4G22070.3 | 51.786 | 56 | 25 | 1 | 137 | 192 | 281 | 334 | 3.49e-14 | 70.5 |
| Msa1463200 | AT4G22070.2 | 51.786 | 56 | 25 | 1 | 137 | 192 | 281 | 334 | 3.49e-14 | 70.5 |
| Msa1463200 | AT4G22070.1 | 51.786 | 56 | 25 | 1 | 137 | 192 | 281 | 334 | 3.49e-14 | 70.5 |
| Msa1463200 | AT4G04450.2 | 51.786 | 56 | 25 | 1 | 137 | 192 | 182 | 235 | 7.03e-14 | 69.7 |
| Msa1463200 | AT4G04450.1 | 51.786 | 56 | 25 | 1 | 137 | 192 | 276 | 329 | 8.34e-14 | 69.3 |
| Msa1463200 | AT1G69810.1 | 39.706 | 68 | 39 | 1 | 125 | 192 | 175 | 240 | 1.39e-12 | 65.9 |
| Msa1463200 | AT1G69810.2 | 39.706 | 68 | 39 | 1 | 125 | 192 | 117 | 182 | 1.81e-12 | 65.1 |
| Msa1463200 | AT1G18860.1 | 58.974 | 39 | 16 | 0 | 154 | 192 | 238 | 276 | 2.75e-12 | 65.1 |
| Msa1463200 | AT5G07100.2 | 41.346 | 104 | 47 | 7 | 94 | 192 | 83 | 177 | 3.29e-12 | 63.2 |
| Msa1463200 | AT5G07100.4 | 41.346 | 104 | 47 | 7 | 94 | 192 | 83 | 177 | 3.29e-12 | 63.2 |
| Msa1463200 | AT5G07100.5 | 41.346 | 104 | 47 | 7 | 94 | 192 | 83 | 177 | 3.29e-12 | 63.2 |
| Msa1463200 | AT5G07100.3 | 41.346 | 104 | 47 | 7 | 94 | 192 | 83 | 177 | 3.29e-12 | 63.2 |
| Msa1463200 | AT5G56270.1 | 53.571 | 56 | 23 | 3 | 137 | 192 | 471 | 523 | 3.39e-12 | 64.7 |
| Msa1463200 | AT4G26640.5 | 66.667 | 39 | 12 | 1 | 154 | 192 | 204 | 241 | 4.82e-12 | 63.9 |
| Msa1463200 | AT4G26640.6 | 66.667 | 39 | 12 | 1 | 154 | 192 | 204 | 241 | 4.82e-12 | 63.9 |
| Msa1463200 | AT4G26640.4 | 66.667 | 39 | 12 | 1 | 154 | 192 | 204 | 241 | 4.82e-12 | 63.9 |
| Msa1463200 | AT4G26640.3 | 66.667 | 39 | 12 | 1 | 154 | 192 | 204 | 241 | 4.82e-12 | 63.9 |
| Msa1463200 | AT4G26640.2 | 66.667 | 39 | 12 | 1 | 154 | 192 | 380 | 417 | 5.13e-12 | 64.3 |
| Msa1463200 | AT4G26640.1 | 66.667 | 39 | 12 | 1 | 154 | 192 | 308 | 345 | 5.30e-12 | 64.3 |
| Msa1463200 | AT4G26640.7 | 66.667 | 39 | 12 | 1 | 154 | 192 | 340 | 377 | 5.57e-12 | 63.9 |
| Msa1463200 | AT5G07100.1 | 41.346 | 104 | 47 | 7 | 94 | 192 | 176 | 270 | 6.60e-12 | 63.5 |
| Msa1463200 | AT1G13960.2 | 50.794 | 63 | 25 | 4 | 130 | 192 | 236 | 292 | 6.75e-12 | 63.5 |
| Msa1463200 | AT1G13960.1 | 50.794 | 63 | 25 | 4 | 130 | 192 | 389 | 445 | 7.26e-12 | 63.9 |
| Msa1463200 | AT2G04880.1 | 64.103 | 39 | 13 | 1 | 154 | 192 | 306 | 343 | 9.85e-12 | 63.2 |
| Msa1463200 | AT2G04880.2 | 64.103 | 39 | 13 | 1 | 154 | 192 | 282 | 319 | 1.02e-11 | 63.2 |
| Msa1463200 | AT2G38470.1 | 50.000 | 56 | 25 | 3 | 137 | 192 | 346 | 398 | 3.98e-11 | 61.6 |
| Msa1463200 | AT2G03340.1 | 49.206 | 63 | 26 | 4 | 130 | 192 | 395 | 451 | 5.97e-11 | 61.2 |
| Msa1463200 | AT4G26440.1 | 30.872 | 149 | 62 | 6 | 82 | 192 | 263 | 408 | 8.81e-11 | 60.5 |
Find 41 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTTCTCTTTCGCGATAT+TGG | 0.191286 | tig0042997:-6604 | Msa1463200:intergenic |
| TCAGGTTGCTGATCAGGTTT+TGG | 0.288511 | tig0042997:+6444 | Msa1463200:intron |
| ATGAATTCAGGTTGCTGATC+AGG | 0.334261 | tig0042997:+6438 | Msa1463200:intron |
| TTCAAGTGCTCCTTTGCTCC+TGG | 0.357212 | tig0042997:+6988 | Msa1463200:CDS |
| GGATATCAGTGGAGAAAATA+TGG | 0.364647 | tig0042997:+6925 | Msa1463200:CDS |
| GCACATGTGGTTCAGTTTCT+CGG | 0.370673 | tig0042997:-6509 | Msa1463200:intergenic |
| GAAAATTGTATCAATAGGTT+TGG | 0.376161 | tig0042997:+6637 | Msa1463200:CDS |
| ACCAATATCGCGAAAGAGAA+AGG | 0.387719 | tig0042997:+6603 | Msa1463200:CDS |
| GTGTTGAAAATTGTATCAAT+AGG | 0.392499 | tig0042997:+6632 | Msa1463200:CDS |
| ACCTAAACACTCTCCCTTCT+CGG | 0.392654 | tig0042997:+6298 | Msa1463200:CDS |
| CCCGAGAAGGGAGAGTGTTT+AGG | 0.410406 | tig0042997:-6299 | Msa1463200:intergenic |
| TATATACTAACCGCACTAAC+AGG | 0.415297 | tig0042997:-6327 | Msa1463200:intergenic |
| GTCTAAGTAGTGAGAATAAG+AGG | 0.450271 | tig0042997:+6482 | Msa1463200:CDS |
| CTAGAGATAATCCCTCTCCT+AGG | 0.467386 | tig0042997:+6959 | Msa1463200:CDS |
| CCTAAACACTCTCCCTTCTC+GGG | 0.479017 | tig0042997:+6299 | Msa1463200:CDS |
| AGAACTTACTAAGCTGGCAT+TGG | 0.495787 | tig0042997:-6767 | Msa1463200:intergenic |
| CACAGGGCAGCCAGGAGCAA+AGG | 0.503671 | tig0042997:-6998 | Msa1463200:intergenic |
| AATTGTAGAACTTACTAAGC+TGG | 0.507761 | tig0042997:-6773 | Msa1463200:intergenic |
| TGTCTCCTCCTCAGTAGTAA+TGG | 0.551953 | tig0042997:-6683 | Msa1463200:intergenic |
| GACCTCGCCGAGAGTTTCCA+AGG | 0.562692 | tig0042997:+6723 | Msa1463200:CDS |
| CTAACAGGTGTGTCCCGAGA+AGG | 0.571023 | tig0042997:-6312 | Msa1463200:intergenic |
| GAGCACTTGAAGTAAGCCCT+AGG | 0.576521 | tig0042997:-6976 | Msa1463200:intergenic |
| CAGTATAATTGTCGCACATG+TGG | 0.579804 | tig0042997:-6522 | Msa1463200:intergenic |
| TAACAGGTGTGTCCCGAGAA+GGG | 0.581505 | tig0042997:-6311 | Msa1463200:intergenic |
| ATCTGTACGCACAAGAACCT+TGG | 0.586094 | tig0042997:-6740 | Msa1463200:intergenic |
| TAGAGATAATCCCTCTCCTA+GGG | 0.588394 | tig0042997:+6960 | Msa1463200:CDS |
| CTGTGTCAAGTTCTTCCACA+TGG | 0.593096 | tig0042997:+6248 | Msa1463200:CDS |
| TTGAAGTAAGCCCTAGGAGA+GGG | 0.594565 | tig0042997:-6970 | Msa1463200:intergenic |
| GTATTGAAGTATGTGAAGGA+TGG | 0.607747 | tig0042997:+6904 | Msa1463200:intron |
| TCGGGACACACCTGTTAGTG+CGG | 0.618406 | tig0042997:+6317 | Msa1463200:CDS |
| TTGGGTATTGAAGTATGTGA+AGG | 0.631029 | tig0042997:+6900 | Msa1463200:intron |
| CCACATGGAACCAACGTGTG+TGG | 0.633718 | tig0042997:+6263 | Msa1463200:CDS |
| CTTGAAGTAAGCCCTAGGAG+AGG | 0.642278 | tig0042997:-6971 | Msa1463200:intergenic |
| ACAAGAACCTTGGAAACTCT+CGG | 0.643388 | tig0042997:-6730 | Msa1463200:intergenic |
| ATGTGAAGGATGGATATCAG+TGG | 0.648222 | tig0042997:+6914 | Msa1463200:CDS |
| CAGCACCATTACTACTGAGG+AGG | 0.656419 | tig0042997:+6678 | Msa1463200:CDS |
| AACCTTGGAAACTCTCGGCG+AGG | 0.657343 | tig0042997:-6725 | Msa1463200:intergenic |
| CCACACACGTTGGTTCCATG+TGG | 0.660564 | tig0042997:-6263 | Msa1463200:intergenic |
| CATGTGGAAGAACTTGACAC+AGG | 0.707976 | tig0042997:-6247 | Msa1463200:intergenic |
| GAGCAGCACCATTACTACTG+AGG | 0.711173 | tig0042997:+6675 | Msa1463200:CDS |
| AGAGAAGTATCCACACACGT+TGG | 0.751057 | tig0042997:-6273 | Msa1463190:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATAAGTTAATTTTTGAATA+TGG | - | tig0042997:6421-6440 | Msa1463200:intergenic | 15.0% |
| !! | AAAAATTAACTTATGAATTC+AGG | + | tig0042997:6426-6445 | Msa1463200:intron | 15.0% |
| !! | ATAATAAAGATATTAGTGTT+TGG | + | tig0042997:6847-6866 | Msa1463200:intron | 15.0% |
| !!! | CATAAGTTAATTTTTGAATA+TGG | - | tig0042997:6421-6440 | Msa1463200:intergenic | 15.0% |
| !! | AAAAATTAACTTATGAATTC+AGG | + | tig0042997:6426-6445 | Msa1463200:intron | 15.0% |
| !! | ATAATAAAGATATTAGTGTT+TGG | + | tig0042997:6847-6866 | Msa1463200:intron | 15.0% |
| !! | ATATGGTATGTTATAATTCA+AGG | - | tig0042997:6404-6423 | Msa1463200:intergenic | 20.0% |
| !!! | TGTTGTCTTGATTTAATTTT+TGG | + | tig0042997:6818-6837 | Msa1463200:intron | 20.0% |
| !! | ATATGGTATGTTATAATTCA+AGG | - | tig0042997:6404-6423 | Msa1463200:intergenic | 20.0% |
| !!! | TGTTGTCTTGATTTAATTTT+TGG | + | tig0042997:6818-6837 | Msa1463200:intron | 20.0% |
| ! | TGTTATAATTCAAGGAAAAG+AGG | - | tig0042997:6396-6415 | Msa1463200:intergenic | 25.0% |
| ! | GTGTTGAAAATTGTATCAAT+AGG | + | tig0042997:6632-6651 | Msa1463200:CDS | 25.0% |
| ! | GAAAATTGTATCAATAGGTT+TGG | + | tig0042997:6637-6656 | Msa1463200:CDS | 25.0% |
| !!! | TAAATACCTTCTTTTTCACA+GGG | - | tig0042997:7017-7036 | Msa1463200:intergenic | 25.0% |
| !!! | TTAAATACCTTCTTTTTCAC+AGG | - | tig0042997:7018-7037 | Msa1463200:intergenic | 25.0% |
| ! | TGTTATAATTCAAGGAAAAG+AGG | - | tig0042997:6396-6415 | Msa1463200:intergenic | 25.0% |
| ! | GTGTTGAAAATTGTATCAAT+AGG | + | tig0042997:6632-6651 | Msa1463200:CDS | 25.0% |
| ! | GAAAATTGTATCAATAGGTT+TGG | + | tig0042997:6637-6656 | Msa1463200:CDS | 25.0% |
| !!! | TAAATACCTTCTTTTTCACA+GGG | - | tig0042997:7017-7036 | Msa1463200:intergenic | 25.0% |
| !!! | TTAAATACCTTCTTTTTCAC+AGG | - | tig0042997:7018-7037 | Msa1463200:intergenic | 25.0% |
| ! | GATACAATTTTCAACACTCT+CGG | - | tig0042997:6629-6648 | Msa1463200:intergenic | 30.0% |
| AATTGTAGAACTTACTAAGC+TGG | - | tig0042997:6776-6795 | Msa1463200:intergenic | 30.0% | |
| !! | TGAGATGCTGAATTTGTTTT+TGG | + | tig0042997:6881-6900 | Msa1463200:intron | 30.0% |
| !! | GAGATGCTGAATTTGTTTTT+GGG | + | tig0042997:6882-6901 | Msa1463200:intron | 30.0% |
| ! | GATACAATTTTCAACACTCT+CGG | - | tig0042997:6629-6648 | Msa1463200:intergenic | 30.0% |
| AATTGTAGAACTTACTAAGC+TGG | - | tig0042997:6776-6795 | Msa1463200:intergenic | 30.0% | |
| !! | TGAGATGCTGAATTTGTTTT+TGG | + | tig0042997:6881-6900 | Msa1463200:intron | 30.0% |
| !! | GAGATGCTGAATTTGTTTTT+GGG | + | tig0042997:6882-6901 | Msa1463200:intron | 30.0% |
| TATATACTAACCGCACTAAC+AGG | - | tig0042997:6330-6349 | Msa1463200:intergenic | 35.0% | |
| GTCTAAGTAGTGAGAATAAG+AGG | + | tig0042997:6482-6501 | Msa1463200:CDS | 35.0% | |
| !! | TTGGGTATTGAAGTATGTGA+AGG | + | tig0042997:6900-6919 | Msa1463200:intron | 35.0% |
| GTATTGAAGTATGTGAAGGA+TGG | + | tig0042997:6904-6923 | Msa1463200:intron | 35.0% | |
| GGATATCAGTGGAGAAAATA+TGG | + | tig0042997:6925-6944 | Msa1463200:CDS | 35.0% | |
| TATATACTAACCGCACTAAC+AGG | - | tig0042997:6330-6349 | Msa1463200:intergenic | 35.0% | |
| GTCTAAGTAGTGAGAATAAG+AGG | + | tig0042997:6482-6501 | Msa1463200:CDS | 35.0% | |
| !! | TTGGGTATTGAAGTATGTGA+AGG | + | tig0042997:6900-6919 | Msa1463200:intron | 35.0% |
| GTATTGAAGTATGTGAAGGA+TGG | + | tig0042997:6904-6923 | Msa1463200:intron | 35.0% | |
| GGATATCAGTGGAGAAAATA+TGG | + | tig0042997:6925-6944 | Msa1463200:CDS | 35.0% | |
| GAACTTGACACAGGCAAAAA+TGG | - | tig0042997:6241-6260 | None:intergenic | 40.0% | |
| !! | ATGAATTCAGGTTGCTGATC+AGG | + | tig0042997:6438-6457 | Msa1463200:intron | 40.0% |
| CAGTATAATTGTCGCACATG+TGG | - | tig0042997:6525-6544 | Msa1463200:intergenic | 40.0% | |
| ACCAATATCGCGAAAGAGAA+AGG | + | tig0042997:6603-6622 | Msa1463200:CDS | 40.0% | |
| ACAAGAACCTTGGAAACTCT+CGG | - | tig0042997:6733-6752 | Msa1463200:intergenic | 40.0% | |
| AGAACTTACTAAGCTGGCAT+TGG | - | tig0042997:6770-6789 | Msa1463200:intergenic | 40.0% | |
| ATGTGAAGGATGGATATCAG+TGG | + | tig0042997:6914-6933 | Msa1463200:CDS | 40.0% | |
| TAGAGATAATCCCTCTCCTA+GGG | + | tig0042997:6960-6979 | Msa1463200:CDS | 40.0% | |
| GAACTTGACACAGGCAAAAA+TGG | - | tig0042997:6241-6260 | Msa1463200:intergenic | 40.0% | |
| !! | ATGAATTCAGGTTGCTGATC+AGG | + | tig0042997:6438-6457 | Msa1463200:intron | 40.0% |
| CAGTATAATTGTCGCACATG+TGG | - | tig0042997:6525-6544 | Msa1463200:intergenic | 40.0% | |
| ACCAATATCGCGAAAGAGAA+AGG | + | tig0042997:6603-6622 | Msa1463200:CDS | 40.0% | |
| ACAAGAACCTTGGAAACTCT+CGG | - | tig0042997:6733-6752 | Msa1463200:intergenic | 40.0% | |
| AGAACTTACTAAGCTGGCAT+TGG | - | tig0042997:6770-6789 | Msa1463200:intergenic | 40.0% | |
| ATGTGAAGGATGGATATCAG+TGG | + | tig0042997:6914-6933 | Msa1463200:CDS | 40.0% | |
| TAGAGATAATCCCTCTCCTA+GGG | + | tig0042997:6960-6979 | Msa1463200:CDS | 40.0% | |
| CATGTGGAAGAACTTGACAC+AGG | - | tig0042997:6250-6269 | None:intergenic | 45.0% | |
| CTGTGTCAAGTTCTTCCACA+TGG | + | tig0042997:6248-6267 | Msa1463200:CDS | 45.0% | |
| !! | AGAGAAGTATCCACACACGT+TGG | - | tig0042997:6276-6295 | Msa1463200:intergenic | 45.0% |
| ACCTAAACACTCTCCCTTCT+CGG | + | tig0042997:6298-6317 | Msa1463200:CDS | 45.0% | |
| !! | TCAGGTTGCTGATCAGGTTT+TGG | + | tig0042997:6444-6463 | Msa1463200:intron | 45.0% |
| GCACATGTGGTTCAGTTTCT+CGG | - | tig0042997:6512-6531 | Msa1463200:intergenic | 45.0% | |
| GCCTTTCTCTTTCGCGATAT+TGG | - | tig0042997:6607-6626 | Msa1463200:intergenic | 45.0% | |
| TGTCTCCTCCTCAGTAGTAA+TGG | - | tig0042997:6686-6705 | Msa1463200:intergenic | 45.0% | |
| ATCTGTACGCACAAGAACCT+TGG | - | tig0042997:6743-6762 | Msa1463200:intergenic | 45.0% | |
| CTAGAGATAATCCCTCTCCT+AGG | + | tig0042997:6959-6978 | Msa1463200:CDS | 45.0% | |
| TTGAAGTAAGCCCTAGGAGA+GGG | - | tig0042997:6973-6992 | Msa1463200:intergenic | 45.0% | |
| CATGTGGAAGAACTTGACAC+AGG | - | tig0042997:6250-6269 | Msa1463200:intergenic | 45.0% | |
| CTGTGTCAAGTTCTTCCACA+TGG | + | tig0042997:6248-6267 | Msa1463200:CDS | 45.0% | |
| !! | AGAGAAGTATCCACACACGT+TGG | - | tig0042997:6276-6295 | Msa1463200:intergenic | 45.0% |
| ACCTAAACACTCTCCCTTCT+CGG | + | tig0042997:6298-6317 | Msa1463200:CDS | 45.0% | |
| !! | TCAGGTTGCTGATCAGGTTT+TGG | + | tig0042997:6444-6463 | Msa1463200:intron | 45.0% |
| GCACATGTGGTTCAGTTTCT+CGG | - | tig0042997:6512-6531 | Msa1463200:intergenic | 45.0% | |
| GCCTTTCTCTTTCGCGATAT+TGG | - | tig0042997:6607-6626 | Msa1463200:intergenic | 45.0% | |
| TGTCTCCTCCTCAGTAGTAA+TGG | - | tig0042997:6686-6705 | Msa1463200:intergenic | 45.0% | |
| ATCTGTACGCACAAGAACCT+TGG | - | tig0042997:6743-6762 | Msa1463200:intergenic | 45.0% | |
| CTAGAGATAATCCCTCTCCT+AGG | + | tig0042997:6959-6978 | Msa1463200:CDS | 45.0% | |
| TTGAAGTAAGCCCTAGGAGA+GGG | - | tig0042997:6973-6992 | Msa1463200:intergenic | 45.0% | |
| GACACAGGCAAAAATGGCTG+AGG | - | tig0042997:6235-6254 | None:intergenic | 50.0% | |
| CCTAAACACTCTCCCTTCTC+GGG | + | tig0042997:6299-6318 | Msa1463200:CDS | 50.0% | |
| TAACAGGTGTGTCCCGAGAA+GGG | - | tig0042997:6314-6333 | Msa1463200:intergenic | 50.0% | |
| GAGCAGCACCATTACTACTG+AGG | + | tig0042997:6675-6694 | Msa1463200:CDS | 50.0% | |
| CAGCACCATTACTACTGAGG+AGG | + | tig0042997:6678-6697 | Msa1463200:CDS | 50.0% | |
| CTTGAAGTAAGCCCTAGGAG+AGG | - | tig0042997:6974-6993 | Msa1463200:intergenic | 50.0% | |
| GAGCACTTGAAGTAAGCCCT+AGG | - | tig0042997:6979-6998 | Msa1463200:intergenic | 50.0% | |
| TTCAAGTGCTCCTTTGCTCC+TGG | + | tig0042997:6988-7007 | Msa1463200:CDS | 50.0% | |
| !! | TTCTTTTTCACAGGGCAGCC+AGG | - | tig0042997:7009-7028 | Msa1463200:intergenic | 50.0% |
| TGGCTGCCCTGTGAAAAAGA+AGG | + | tig0042997:7008-7027 | Msa1463200:CDS | 50.0% | |
| GACACAGGCAAAAATGGCTG+AGG | - | tig0042997:6235-6254 | Msa1463200:intergenic | 50.0% | |
| CCTAAACACTCTCCCTTCTC+GGG | + | tig0042997:6299-6318 | Msa1463200:CDS | 50.0% | |
| TAACAGGTGTGTCCCGAGAA+GGG | - | tig0042997:6314-6333 | Msa1463200:intergenic | 50.0% | |
| GAGCAGCACCATTACTACTG+AGG | + | tig0042997:6675-6694 | Msa1463200:CDS | 50.0% | |
| CAGCACCATTACTACTGAGG+AGG | + | tig0042997:6678-6697 | Msa1463200:CDS | 50.0% | |
| CTTGAAGTAAGCCCTAGGAG+AGG | - | tig0042997:6974-6993 | Msa1463200:intergenic | 50.0% | |
| GAGCACTTGAAGTAAGCCCT+AGG | - | tig0042997:6979-6998 | Msa1463200:intergenic | 50.0% | |
| TTCAAGTGCTCCTTTGCTCC+TGG | + | tig0042997:6988-7007 | Msa1463200:CDS | 50.0% | |
| !! | TTCTTTTTCACAGGGCAGCC+AGG | - | tig0042997:7009-7028 | Msa1463200:intergenic | 50.0% |
| TGGCTGCCCTGTGAAAAAGA+AGG | + | tig0042997:7008-7027 | Msa1463200:CDS | 50.0% | |
| !! | CCACACACGTTGGTTCCATG+TGG | - | tig0042997:6266-6285 | Msa1463200:intergenic | 55.0% |
| CCACATGGAACCAACGTGTG+TGG | + | tig0042997:6263-6282 | Msa1463200:CDS | 55.0% | |
| !! | CCCGAGAAGGGAGAGTGTTT+AGG | - | tig0042997:6302-6321 | Msa1463200:intergenic | 55.0% |
| CTAACAGGTGTGTCCCGAGA+AGG | - | tig0042997:6315-6334 | Msa1463200:intergenic | 55.0% | |
| TCGGGACACACCTGTTAGTG+CGG | + | tig0042997:6317-6336 | Msa1463200:CDS | 55.0% | |
| AACCTTGGAAACTCTCGGCG+AGG | - | tig0042997:6728-6747 | Msa1463200:intergenic | 55.0% | |
| !! | CCACACACGTTGGTTCCATG+TGG | - | tig0042997:6266-6285 | Msa1463200:intergenic | 55.0% |
| CCACATGGAACCAACGTGTG+TGG | + | tig0042997:6263-6282 | Msa1463200:CDS | 55.0% | |
| !! | CCCGAGAAGGGAGAGTGTTT+AGG | - | tig0042997:6302-6321 | Msa1463200:intergenic | 55.0% |
| CTAACAGGTGTGTCCCGAGA+AGG | - | tig0042997:6315-6334 | Msa1463200:intergenic | 55.0% | |
| TCGGGACACACCTGTTAGTG+CGG | + | tig0042997:6317-6336 | Msa1463200:CDS | 55.0% | |
| AACCTTGGAAACTCTCGGCG+AGG | - | tig0042997:6728-6747 | Msa1463200:intergenic | 55.0% | |
| GACCTCGCCGAGAGTTTCCA+AGG | + | tig0042997:6723-6742 | Msa1463200:CDS | 60.0% | |
| GACCTCGCCGAGAGTTTCCA+AGG | + | tig0042997:6723-6742 | Msa1463200:CDS | 60.0% | |
| CACAGGGCAGCCAGGAGCAA+AGG | - | tig0042997:7001-7020 | Msa1463200:intergenic | 65.0% | |
| CACAGGGCAGCCAGGAGCAA+AGG | - | tig0042997:7001-7020 | Msa1463200:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0042997 | gene | 6216 | 7041 | 6216 | ID=Msa1463200;Name=Msa1463200 |
| tig0042997 | mRNA | 6216 | 7041 | 6216 | ID=Msa1463200-mRNA-1;Parent=Msa1463200;Name=Msa1463200-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|1|0.33|1|1|1|3|0|194 |
| tig0042997 | exon | 6216 | 6338 | 6216 | ID=Msa1463200-mRNA-1:exon:23935;Parent=Msa1463200-mRNA-1 |
| tig0042997 | exon | 6448 | 6780 | 6448 | ID=Msa1463200-mRNA-1:exon:23936;Parent=Msa1463200-mRNA-1 |
| tig0042997 | exon | 6913 | 7041 | 6913 | ID=Msa1463200-mRNA-1:exon:23937;Parent=Msa1463200-mRNA-1 |
| tig0042997 | CDS | 6216 | 6338 | 6216 | ID=Msa1463200-mRNA-1:cds;Parent=Msa1463200-mRNA-1 |
| tig0042997 | CDS | 6448 | 6780 | 6448 | ID=Msa1463200-mRNA-1:cds;Parent=Msa1463200-mRNA-1 |
| tig0042997 | CDS | 6913 | 7041 | 6913 | ID=Msa1463200-mRNA-1:cds;Parent=Msa1463200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
