Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374740 | XP_003603300.1 | 90.286 | 175 | 17 | 0 | 1 | 175 | 1 | 175 | 2.78e-115 | 339 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374740 | sp|Q9SAH7|WRK40_ARATH | 47.541 | 183 | 79 | 6 | 4 | 175 | 7 | 183 | 2.12e-42 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374740 | G7J9V1 | 90.286 | 175 | 17 | 0 | 1 | 175 | 1 | 175 | 1.33e-115 | 339 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1374740 | TF | WRKY |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1374740 | Msa1463200 | 0.953479 | 2.503206e-111 | -8.615850e-47 |
| Msa0382450 | Msa1374740 | 0.945737 | 1.741315e-104 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374740 | MtrunA17_Chr3g0136961 | 90.286 | 175 | 17 | 0 | 1 | 175 | 1 | 175 | 2.56e-119 | 339 |
| Msa1374740 | MtrunA17_Chr1g0150281 | 59.459 | 185 | 57 | 5 | 1 | 175 | 1 | 177 | 4.80e-66 | 203 |
| Msa1374740 | MtrunA17_Chr2g0333851 | 45.161 | 155 | 71 | 2 | 29 | 175 | 58 | 206 | 2.57e-38 | 133 |
| Msa1374740 | MtrunA17_Chr4g0001361 | 41.206 | 199 | 82 | 4 | 6 | 175 | 7 | 199 | 2.01e-34 | 123 |
| Msa1374740 | MtrunA17_Chr1g0150271 | 39.726 | 146 | 63 | 3 | 33 | 175 | 15 | 138 | 1.68e-23 | 93.2 |
| Msa1374740 | MtrunA17_Chr4g0051181 | 42.857 | 91 | 42 | 3 | 85 | 175 | 200 | 280 | 1.28e-16 | 76.6 |
| Msa1374740 | MtrunA17_Chr3g0099641 | 25.751 | 233 | 112 | 6 | 1 | 175 | 59 | 288 | 1.06e-15 | 73.9 |
| Msa1374740 | MtrunA17_Chr4g0075201 | 28.729 | 181 | 94 | 5 | 30 | 175 | 124 | 304 | 3.54e-15 | 72.4 |
| Msa1374740 | MtrunA17_Chr2g0288871 | 53.333 | 60 | 23 | 2 | 116 | 175 | 288 | 342 | 1.68e-14 | 70.5 |
| Msa1374740 | MtrunA17_Chr2g0322391 | 51.786 | 56 | 25 | 1 | 120 | 175 | 333 | 386 | 4.59e-14 | 69.3 |
| Msa1374740 | MtrunA17_Chr7g0270831 | 50.943 | 53 | 26 | 0 | 123 | 175 | 201 | 253 | 6.22e-14 | 68.6 |
| Msa1374740 | MtrunA17_Chr7g0216891 | 61.538 | 39 | 15 | 0 | 137 | 175 | 218 | 256 | 8.42e-14 | 68.6 |
| Msa1374740 | MtrunA17_Chr4g0060271 | 61.538 | 39 | 15 | 0 | 137 | 175 | 254 | 292 | 8.84e-14 | 68.6 |
| Msa1374740 | MtrunA17_Chr5g0447701 | 57.407 | 54 | 20 | 2 | 122 | 175 | 238 | 288 | 2.39e-13 | 67.0 |
| Msa1374740 | MtrunA17_Chr4g0025051 | 50.000 | 54 | 27 | 0 | 122 | 175 | 319 | 372 | 3.62e-13 | 66.6 |
| Msa1374740 | MtrunA17_Chr5g0445311 | 66.667 | 39 | 12 | 1 | 137 | 175 | 363 | 400 | 7.92e-13 | 65.5 |
| Msa1374740 | MtrunA17_Chr3g0106491 | 53.571 | 56 | 23 | 3 | 120 | 175 | 349 | 401 | 8.64e-13 | 65.5 |
| Msa1374740 | MtrunA17_Chr3g0101131 | 66.667 | 39 | 12 | 1 | 137 | 175 | 414 | 451 | 1.29e-12 | 65.1 |
| Msa1374740 | MtrunA17_Chr2g0302391 | 48.214 | 56 | 27 | 1 | 120 | 175 | 195 | 248 | 1.53e-12 | 64.7 |
| Msa1374740 | MtrunA17_Chr5g0418191 | 50.000 | 66 | 27 | 4 | 110 | 175 | 297 | 356 | 2.89e-12 | 63.9 |
| Msa1374740 | MtrunA17_Chr4g0042831 | 47.692 | 65 | 28 | 4 | 111 | 175 | 256 | 314 | 4.37e-12 | 63.2 |
| Msa1374740 | MtrunA17_Chr5g0432161 | 51.786 | 56 | 24 | 3 | 120 | 175 | 405 | 457 | 9.12e-12 | 62.8 |
| Msa1374740 | MtrunA17_Chr4g0025061 | 47.273 | 55 | 29 | 0 | 121 | 175 | 343 | 397 | 1.01e-11 | 62.4 |
| Msa1374740 | MtrunA17_Chr7g0249311 | 41.250 | 80 | 41 | 3 | 99 | 175 | 352 | 428 | 1.09e-11 | 62.4 |
| Msa1374740 | MtrunA17_Chr7g0249301 | 50.000 | 56 | 25 | 2 | 120 | 175 | 276 | 328 | 1.55e-11 | 61.6 |
| Msa1374740 | MtrunA17_Chr1g0150801 | 56.410 | 39 | 16 | 1 | 137 | 175 | 101 | 138 | 4.25e-11 | 58.5 |
| Msa1374740 | MtrunA17_Chr3g0079691 | 61.538 | 39 | 14 | 1 | 137 | 175 | 494 | 531 | 5.09e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1374740 | AT1G80840.1 | 47.541 | 183 | 79 | 6 | 4 | 175 | 7 | 183 | 2.16e-43 | 146 |
| Msa1374740 | AT4G31800.3 | 39.904 | 208 | 88 | 5 | 6 | 176 | 7 | 214 | 3.53e-35 | 123 |
| Msa1374740 | AT4G31800.1 | 40.097 | 207 | 87 | 5 | 6 | 175 | 7 | 213 | 6.74e-35 | 124 |
| Msa1374740 | AT2G25000.2 | 43.137 | 153 | 68 | 3 | 29 | 175 | 1 | 140 | 3.25e-33 | 118 |
| Msa1374740 | AT2G25000.4 | 43.137 | 153 | 68 | 3 | 29 | 175 | 1 | 140 | 3.25e-33 | 118 |
| Msa1374740 | AT2G25000.1 | 40.782 | 179 | 75 | 5 | 15 | 175 | 18 | 183 | 5.01e-33 | 119 |
| Msa1374740 | AT2G25000.3 | 43.137 | 153 | 68 | 3 | 29 | 175 | 23 | 162 | 6.42e-33 | 118 |
| Msa1374740 | AT4G31800.2 | 41.497 | 147 | 67 | 3 | 48 | 175 | 2 | 148 | 9.04e-27 | 102 |
| Msa1374740 | AT1G62300.1 | 27.897 | 233 | 105 | 6 | 4 | 175 | 119 | 349 | 1.92e-17 | 79.3 |
| Msa1374740 | AT1G68150.1 | 29.444 | 180 | 90 | 7 | 28 | 175 | 98 | 272 | 3.27e-15 | 72.8 |
| Msa1374740 | AT4G01720.1 | 29.379 | 177 | 86 | 6 | 33 | 175 | 105 | 276 | 4.62e-15 | 72.4 |
| Msa1374740 | AT5G15130.1 | 64.103 | 39 | 14 | 0 | 137 | 175 | 226 | 264 | 1.85e-14 | 70.9 |
| Msa1374740 | AT5G15130.2 | 44.156 | 77 | 38 | 2 | 99 | 175 | 151 | 222 | 1.92e-14 | 70.9 |
| Msa1374740 | AT4G22070.4 | 51.786 | 56 | 25 | 1 | 120 | 175 | 281 | 334 | 2.25e-14 | 70.5 |
| Msa1374740 | AT4G22070.3 | 51.786 | 56 | 25 | 1 | 120 | 175 | 281 | 334 | 2.25e-14 | 70.5 |
| Msa1374740 | AT4G22070.2 | 51.786 | 56 | 25 | 1 | 120 | 175 | 281 | 334 | 2.25e-14 | 70.5 |
| Msa1374740 | AT4G22070.1 | 51.786 | 56 | 25 | 1 | 120 | 175 | 281 | 334 | 2.25e-14 | 70.5 |
| Msa1374740 | AT4G04450.2 | 51.786 | 56 | 25 | 1 | 120 | 175 | 182 | 235 | 5.07e-14 | 69.3 |
| Msa1374740 | AT4G04450.1 | 51.786 | 56 | 25 | 1 | 120 | 175 | 276 | 329 | 6.08e-14 | 69.3 |
| Msa1374740 | AT1G69810.1 | 39.706 | 68 | 39 | 1 | 108 | 175 | 175 | 240 | 1.13e-12 | 65.5 |
| Msa1374740 | AT1G69810.2 | 39.706 | 68 | 39 | 1 | 108 | 175 | 117 | 182 | 1.35e-12 | 65.1 |
| Msa1374740 | AT1G18860.1 | 58.974 | 39 | 16 | 0 | 137 | 175 | 238 | 276 | 1.52e-12 | 65.1 |
| Msa1374740 | AT5G56270.1 | 53.571 | 56 | 23 | 3 | 120 | 175 | 471 | 523 | 2.64e-12 | 64.7 |
| Msa1374740 | AT5G07100.2 | 41.346 | 104 | 47 | 6 | 77 | 175 | 83 | 177 | 3.21e-12 | 62.8 |
| Msa1374740 | AT5G07100.4 | 41.346 | 104 | 47 | 6 | 77 | 175 | 83 | 177 | 3.21e-12 | 62.8 |
| Msa1374740 | AT5G07100.5 | 41.346 | 104 | 47 | 6 | 77 | 175 | 83 | 177 | 3.21e-12 | 62.8 |
| Msa1374740 | AT5G07100.3 | 41.346 | 104 | 47 | 6 | 77 | 175 | 83 | 177 | 3.21e-12 | 62.8 |
| Msa1374740 | AT4G26640.5 | 66.667 | 39 | 12 | 1 | 137 | 175 | 204 | 241 | 3.22e-12 | 63.9 |
| Msa1374740 | AT4G26640.6 | 66.667 | 39 | 12 | 1 | 137 | 175 | 204 | 241 | 3.22e-12 | 63.9 |
| Msa1374740 | AT4G26640.4 | 66.667 | 39 | 12 | 1 | 137 | 175 | 204 | 241 | 3.22e-12 | 63.9 |
| Msa1374740 | AT4G26640.3 | 66.667 | 39 | 12 | 1 | 137 | 175 | 204 | 241 | 3.22e-12 | 63.9 |
| Msa1374740 | AT4G26640.1 | 66.667 | 39 | 12 | 1 | 137 | 175 | 308 | 345 | 3.40e-12 | 64.3 |
| Msa1374740 | AT4G26640.2 | 66.667 | 39 | 12 | 1 | 137 | 175 | 380 | 417 | 3.60e-12 | 64.3 |
| Msa1374740 | AT4G26640.7 | 66.667 | 39 | 12 | 1 | 137 | 175 | 340 | 377 | 3.63e-12 | 63.9 |
| Msa1374740 | AT1G13960.2 | 50.794 | 63 | 25 | 4 | 113 | 175 | 236 | 292 | 4.07e-12 | 63.9 |
| Msa1374740 | AT1G13960.1 | 50.794 | 63 | 25 | 4 | 113 | 175 | 389 | 445 | 4.92e-12 | 63.5 |
| Msa1374740 | AT5G07100.1 | 41.346 | 104 | 47 | 6 | 77 | 175 | 176 | 270 | 6.47e-12 | 62.8 |
| Msa1374740 | AT2G04880.1 | 64.103 | 39 | 13 | 1 | 137 | 175 | 306 | 343 | 6.84e-12 | 63.2 |
| Msa1374740 | AT2G04880.2 | 64.103 | 39 | 13 | 1 | 137 | 175 | 282 | 319 | 7.13e-12 | 63.2 |
| Msa1374740 | AT2G38470.1 | 61.538 | 39 | 14 | 1 | 137 | 175 | 361 | 398 | 3.00e-11 | 61.6 |
| Msa1374740 | AT2G03340.1 | 49.206 | 63 | 26 | 4 | 113 | 175 | 395 | 451 | 4.30e-11 | 60.8 |
| Msa1374740 | AT4G26440.1 | 30.872 | 149 | 62 | 6 | 65 | 175 | 263 | 408 | 4.85e-11 | 60.8 |
| Msa1374740 | AT3G01080.1 | 49.206 | 63 | 26 | 4 | 113 | 175 | 286 | 342 | 8.27e-11 | 60.1 |
| Msa1374740 | AT3G01080.2 | 49.206 | 63 | 26 | 4 | 113 | 175 | 324 | 380 | 9.74e-11 | 60.1 |
Find 41 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCTTTCTCTTTCGCGATAT+TGG | 0.191286 | tig0019570:-48184 | None:intergenic |
| TCAGGTTGCTGATCAGGTTT+TGG | 0.288511 | tig0019570:+48024 | Msa1374740:intron |
| ATGAATTCAGGTTGCTGATC+AGG | 0.334261 | tig0019570:+48018 | Msa1374740:intron |
| TTCAAGTGCTCCTTTGCTCC+TGG | 0.357212 | tig0019570:+48568 | Msa1374740:CDS |
| GGATATCAGTGGAGAAAATA+TGG | 0.364647 | tig0019570:+48505 | Msa1374740:CDS |
| GCACATGTGGTTCAGTTTCT+CGG | 0.370673 | tig0019570:-48089 | None:intergenic |
| GAAAATTGTATCAATAGGTT+TGG | 0.376161 | tig0019570:+48217 | Msa1374740:CDS |
| ACCAATATCGCGAAAGAGAA+AGG | 0.387719 | tig0019570:+48183 | Msa1374740:CDS |
| GTGTTGAAAATTGTATCAAT+AGG | 0.392499 | tig0019570:+48212 | Msa1374740:CDS |
| ACCTAAACACTCTCCCTTCT+CGG | 0.392654 | tig0019570:+47874 | Msa1374740:CDS |
| CCCGAGAAGGGAGAGTGTTT+AGG | 0.410406 | tig0019570:-47875 | None:intergenic |
| TATATACTAACCGCACTAAC+AGG | 0.411646 | tig0019570:-47903 | None:intergenic |
| GTCTAAGTAGTGAGAATAAG+AGG | 0.450271 | tig0019570:+48062 | Msa1374740:CDS |
| CTAGAGATAATCCCTCTCCT+AGG | 0.467386 | tig0019570:+48539 | Msa1374740:CDS |
| CCTAAACACTCTCCCTTCTC+GGG | 0.479017 | tig0019570:+47875 | Msa1374740:CDS |
| AGAACTTACTAAGCTGGCAT+TGG | 0.495787 | tig0019570:-48347 | None:intergenic |
| CACAGGGCAGCCAGGAGCAA+AGG | 0.503671 | tig0019570:-48578 | None:intergenic |
| AATTGTAGAACTTACTAAGC+TGG | 0.507761 | tig0019570:-48353 | None:intergenic |
| TGTCTCCTCCTCAGTAGTAA+TGG | 0.551953 | tig0019570:-48263 | None:intergenic |
| GACCTCGCCGAGAGTTTCCA+AGG | 0.562692 | tig0019570:+48303 | Msa1374740:CDS |
| CTAACAGGTGTGTCCCGAGA+AGG | 0.571023 | tig0019570:-47888 | None:intergenic |
| GAGCACTTGAAGTAAGCCCT+AGG | 0.576521 | tig0019570:-48556 | None:intergenic |
| CAGTATAATTGTCGCACATG+TGG | 0.579804 | tig0019570:-48102 | None:intergenic |
| TAACAGGTGTGTCCCGAGAA+GGG | 0.581505 | tig0019570:-47887 | None:intergenic |
| ATCTGTACGCACAAGAACCT+TGG | 0.586094 | tig0019570:-48320 | None:intergenic |
| TAGAGATAATCCCTCTCCTA+GGG | 0.588394 | tig0019570:+48540 | Msa1374740:CDS |
| CTGTGTCAAGTTCTTCCACA+TGG | 0.593096 | tig0019570:+47824 | Msa1374740:exon |
| TTGAAGTAAGCCCTAGGAGA+GGG | 0.594565 | tig0019570:-48550 | None:intergenic |
| GTATTGAAGTATGTGAAGGA+TGG | 0.607747 | tig0019570:+48484 | Msa1374740:intron |
| TCGGGACACACCTGTTAGTG+CGG | 0.618406 | tig0019570:+47893 | Msa1374740:CDS |
| TTGGGTATTGAAGTATGTGA+AGG | 0.631029 | tig0019570:+48480 | Msa1374740:intron |
| CCACATGGAACCAACGTGTG+TGG | 0.633718 | tig0019570:+47839 | Msa1374740:exon |
| CTTGAAGTAAGCCCTAGGAG+AGG | 0.642278 | tig0019570:-48551 | None:intergenic |
| ACAAGAACCTTGGAAACTCT+CGG | 0.643388 | tig0019570:-48310 | None:intergenic |
| ATGTGAAGGATGGATATCAG+TGG | 0.648222 | tig0019570:+48494 | Msa1374740:CDS |
| CAGCACCATTACTACTGAGG+AGG | 0.656419 | tig0019570:+48258 | Msa1374740:CDS |
| AACCTTGGAAACTCTCGGCG+AGG | 0.657343 | tig0019570:-48305 | None:intergenic |
| CCACACACGTTGGTTCCATG+TGG | 0.660564 | tig0019570:-47839 | None:intergenic |
| CATGTGGAAGAACTTGACAC+AGG | 0.707976 | tig0019570:-47823 | None:intergenic |
| GAGCAGCACCATTACTACTG+AGG | 0.711173 | tig0019570:+48255 | Msa1374740:CDS |
| AGAGAAGTATCCACACACGT+TGG | 0.751057 | tig0019570:-47849 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CATAAGTTAATTTTTAAATA+TGG | - | tig0019570:48001-48020 | None:intergenic | 10.0% |
| !!! | CATAAGTTAATTTTTAAATA+TGG | - | tig0019570:48001-48020 | None:intergenic | 10.0% |
| !! | AAAAATTAACTTATGAATTC+AGG | + | tig0019570:48006-48025 | Msa1374740:intron | 15.0% |
| !! | ATAATAAAGATATTAGTGTT+TGG | + | tig0019570:48427-48446 | Msa1374740:intron | 15.0% |
| !! | AAAAATTAACTTATGAATTC+AGG | + | tig0019570:48006-48025 | Msa1374740:intron | 15.0% |
| !! | ATAATAAAGATATTAGTGTT+TGG | + | tig0019570:48427-48446 | Msa1374740:intron | 15.0% |
| !! | ATATGGTATGTTATAATTCA+AGG | - | tig0019570:47984-48003 | None:intergenic | 20.0% |
| !!! | TGTTGTCTTGATTTAATTTT+TGG | + | tig0019570:48398-48417 | Msa1374740:intron | 20.0% |
| !! | ATATGGTATGTTATAATTCA+AGG | - | tig0019570:47984-48003 | None:intergenic | 20.0% |
| !!! | TGTTGTCTTGATTTAATTTT+TGG | + | tig0019570:48398-48417 | Msa1374740:intron | 20.0% |
| ! | TGTTATAATTCAAGGAAAAG+AGG | - | tig0019570:47976-47995 | None:intergenic | 25.0% |
| ! | GTGTTGAAAATTGTATCAAT+AGG | + | tig0019570:48212-48231 | Msa1374740:CDS | 25.0% |
| ! | GAAAATTGTATCAATAGGTT+TGG | + | tig0019570:48217-48236 | Msa1374740:CDS | 25.0% |
| !!! | TAAATACCTTCTTTTTCACA+GGG | - | tig0019570:48597-48616 | None:intergenic | 25.0% |
| !!! | TTAAATACCTTCTTTTTCAC+AGG | - | tig0019570:48598-48617 | None:intergenic | 25.0% |
| ! | TGTTATAATTCAAGGAAAAG+AGG | - | tig0019570:47976-47995 | None:intergenic | 25.0% |
| ! | GTGTTGAAAATTGTATCAAT+AGG | + | tig0019570:48212-48231 | Msa1374740:CDS | 25.0% |
| ! | GAAAATTGTATCAATAGGTT+TGG | + | tig0019570:48217-48236 | Msa1374740:CDS | 25.0% |
| !!! | TAAATACCTTCTTTTTCACA+GGG | - | tig0019570:48597-48616 | None:intergenic | 25.0% |
| !!! | TTAAATACCTTCTTTTTCAC+AGG | - | tig0019570:48598-48617 | None:intergenic | 25.0% |
| ! | GATACAATTTTCAACACTCT+CGG | - | tig0019570:48209-48228 | None:intergenic | 30.0% |
| AATTGTAGAACTTACTAAGC+TGG | - | tig0019570:48356-48375 | None:intergenic | 30.0% | |
| !! | TGAGATGCTGAATTTGTTTT+TGG | + | tig0019570:48461-48480 | Msa1374740:intron | 30.0% |
| !! | GAGATGCTGAATTTGTTTTT+GGG | + | tig0019570:48462-48481 | Msa1374740:intron | 30.0% |
| ! | GATACAATTTTCAACACTCT+CGG | - | tig0019570:48209-48228 | None:intergenic | 30.0% |
| AATTGTAGAACTTACTAAGC+TGG | - | tig0019570:48356-48375 | None:intergenic | 30.0% | |
| !! | TGAGATGCTGAATTTGTTTT+TGG | + | tig0019570:48461-48480 | Msa1374740:intron | 30.0% |
| !! | GAGATGCTGAATTTGTTTTT+GGG | + | tig0019570:48462-48481 | Msa1374740:intron | 30.0% |
| TATATACTAACCGCACTAAC+AGG | - | tig0019570:47906-47925 | None:intergenic | 35.0% | |
| GTCTAAGTAGTGAGAATAAG+AGG | + | tig0019570:48062-48081 | Msa1374740:CDS | 35.0% | |
| !! | TTGGGTATTGAAGTATGTGA+AGG | + | tig0019570:48480-48499 | Msa1374740:intron | 35.0% |
| GTATTGAAGTATGTGAAGGA+TGG | + | tig0019570:48484-48503 | Msa1374740:intron | 35.0% | |
| GGATATCAGTGGAGAAAATA+TGG | + | tig0019570:48505-48524 | Msa1374740:CDS | 35.0% | |
| TATATACTAACCGCACTAAC+AGG | - | tig0019570:47906-47925 | None:intergenic | 35.0% | |
| GTCTAAGTAGTGAGAATAAG+AGG | + | tig0019570:48062-48081 | Msa1374740:CDS | 35.0% | |
| !! | TTGGGTATTGAAGTATGTGA+AGG | + | tig0019570:48480-48499 | Msa1374740:intron | 35.0% |
| GTATTGAAGTATGTGAAGGA+TGG | + | tig0019570:48484-48503 | Msa1374740:intron | 35.0% | |
| GGATATCAGTGGAGAAAATA+TGG | + | tig0019570:48505-48524 | Msa1374740:CDS | 35.0% | |
| GAACTTGACACAGGCAAAAA+TGG | - | tig0019570:47817-47836 | None:intergenic | 40.0% | |
| !! | ATGAATTCAGGTTGCTGATC+AGG | + | tig0019570:48018-48037 | Msa1374740:intron | 40.0% |
| CAGTATAATTGTCGCACATG+TGG | - | tig0019570:48105-48124 | None:intergenic | 40.0% | |
| ACCAATATCGCGAAAGAGAA+AGG | + | tig0019570:48183-48202 | Msa1374740:CDS | 40.0% | |
| ACAAGAACCTTGGAAACTCT+CGG | - | tig0019570:48313-48332 | None:intergenic | 40.0% | |
| AGAACTTACTAAGCTGGCAT+TGG | - | tig0019570:48350-48369 | None:intergenic | 40.0% | |
| ATGTGAAGGATGGATATCAG+TGG | + | tig0019570:48494-48513 | Msa1374740:CDS | 40.0% | |
| TAGAGATAATCCCTCTCCTA+GGG | + | tig0019570:48540-48559 | Msa1374740:CDS | 40.0% | |
| GAACTTGACACAGGCAAAAA+TGG | - | tig0019570:47817-47836 | None:intergenic | 40.0% | |
| !! | ATGAATTCAGGTTGCTGATC+AGG | + | tig0019570:48018-48037 | Msa1374740:intron | 40.0% |
| CAGTATAATTGTCGCACATG+TGG | - | tig0019570:48105-48124 | None:intergenic | 40.0% | |
| ACCAATATCGCGAAAGAGAA+AGG | + | tig0019570:48183-48202 | Msa1374740:CDS | 40.0% | |
| ACAAGAACCTTGGAAACTCT+CGG | - | tig0019570:48313-48332 | None:intergenic | 40.0% | |
| AGAACTTACTAAGCTGGCAT+TGG | - | tig0019570:48350-48369 | None:intergenic | 40.0% | |
| ATGTGAAGGATGGATATCAG+TGG | + | tig0019570:48494-48513 | Msa1374740:CDS | 40.0% | |
| TAGAGATAATCCCTCTCCTA+GGG | + | tig0019570:48540-48559 | Msa1374740:CDS | 40.0% | |
| CATGTGGAAGAACTTGACAC+AGG | - | tig0019570:47826-47845 | None:intergenic | 45.0% | |
| CTGTGTCAAGTTCTTCCACA+TGG | + | tig0019570:47824-47843 | Msa1374740:exon | 45.0% | |
| !! | AGAGAAGTATCCACACACGT+TGG | - | tig0019570:47852-47871 | None:intergenic | 45.0% |
| ACCTAAACACTCTCCCTTCT+CGG | + | tig0019570:47874-47893 | Msa1374740:CDS | 45.0% | |
| !! | TCAGGTTGCTGATCAGGTTT+TGG | + | tig0019570:48024-48043 | Msa1374740:intron | 45.0% |
| GCACATGTGGTTCAGTTTCT+CGG | - | tig0019570:48092-48111 | None:intergenic | 45.0% | |
| GCCTTTCTCTTTCGCGATAT+TGG | - | tig0019570:48187-48206 | None:intergenic | 45.0% | |
| TGTCTCCTCCTCAGTAGTAA+TGG | - | tig0019570:48266-48285 | None:intergenic | 45.0% | |
| ATCTGTACGCACAAGAACCT+TGG | - | tig0019570:48323-48342 | None:intergenic | 45.0% | |
| CTAGAGATAATCCCTCTCCT+AGG | + | tig0019570:48539-48558 | Msa1374740:CDS | 45.0% | |
| TTGAAGTAAGCCCTAGGAGA+GGG | - | tig0019570:48553-48572 | None:intergenic | 45.0% | |
| CATGTGGAAGAACTTGACAC+AGG | - | tig0019570:47826-47845 | None:intergenic | 45.0% | |
| CTGTGTCAAGTTCTTCCACA+TGG | + | tig0019570:47824-47843 | Msa1374740:exon | 45.0% | |
| !! | AGAGAAGTATCCACACACGT+TGG | - | tig0019570:47852-47871 | None:intergenic | 45.0% |
| ACCTAAACACTCTCCCTTCT+CGG | + | tig0019570:47874-47893 | Msa1374740:CDS | 45.0% | |
| !! | TCAGGTTGCTGATCAGGTTT+TGG | + | tig0019570:48024-48043 | Msa1374740:intron | 45.0% |
| GCACATGTGGTTCAGTTTCT+CGG | - | tig0019570:48092-48111 | None:intergenic | 45.0% | |
| GCCTTTCTCTTTCGCGATAT+TGG | - | tig0019570:48187-48206 | None:intergenic | 45.0% | |
| TGTCTCCTCCTCAGTAGTAA+TGG | - | tig0019570:48266-48285 | None:intergenic | 45.0% | |
| ATCTGTACGCACAAGAACCT+TGG | - | tig0019570:48323-48342 | None:intergenic | 45.0% | |
| CTAGAGATAATCCCTCTCCT+AGG | + | tig0019570:48539-48558 | Msa1374740:CDS | 45.0% | |
| TTGAAGTAAGCCCTAGGAGA+GGG | - | tig0019570:48553-48572 | None:intergenic | 45.0% | |
| GACACAGGCAAAAATGGCTG+AGG | - | tig0019570:47811-47830 | None:intergenic | 50.0% | |
| CCTAAACACTCTCCCTTCTC+GGG | + | tig0019570:47875-47894 | Msa1374740:CDS | 50.0% | |
| TAACAGGTGTGTCCCGAGAA+GGG | - | tig0019570:47890-47909 | None:intergenic | 50.0% | |
| GAGCAGCACCATTACTACTG+AGG | + | tig0019570:48255-48274 | Msa1374740:CDS | 50.0% | |
| CAGCACCATTACTACTGAGG+AGG | + | tig0019570:48258-48277 | Msa1374740:CDS | 50.0% | |
| CTTGAAGTAAGCCCTAGGAG+AGG | - | tig0019570:48554-48573 | None:intergenic | 50.0% | |
| GAGCACTTGAAGTAAGCCCT+AGG | - | tig0019570:48559-48578 | None:intergenic | 50.0% | |
| TTCAAGTGCTCCTTTGCTCC+TGG | + | tig0019570:48568-48587 | Msa1374740:CDS | 50.0% | |
| !! | TTCTTTTTCACAGGGCAGCC+AGG | - | tig0019570:48589-48608 | None:intergenic | 50.0% |
| TGGCTGCCCTGTGAAAAAGA+AGG | + | tig0019570:48588-48607 | Msa1374740:CDS | 50.0% | |
| GACACAGGCAAAAATGGCTG+AGG | - | tig0019570:47811-47830 | None:intergenic | 50.0% | |
| CCTAAACACTCTCCCTTCTC+GGG | + | tig0019570:47875-47894 | Msa1374740:CDS | 50.0% | |
| TAACAGGTGTGTCCCGAGAA+GGG | - | tig0019570:47890-47909 | None:intergenic | 50.0% | |
| GAGCAGCACCATTACTACTG+AGG | + | tig0019570:48255-48274 | Msa1374740:CDS | 50.0% | |
| CAGCACCATTACTACTGAGG+AGG | + | tig0019570:48258-48277 | Msa1374740:CDS | 50.0% | |
| CTTGAAGTAAGCCCTAGGAG+AGG | - | tig0019570:48554-48573 | None:intergenic | 50.0% | |
| GAGCACTTGAAGTAAGCCCT+AGG | - | tig0019570:48559-48578 | None:intergenic | 50.0% | |
| TTCAAGTGCTCCTTTGCTCC+TGG | + | tig0019570:48568-48587 | Msa1374740:CDS | 50.0% | |
| !! | TTCTTTTTCACAGGGCAGCC+AGG | - | tig0019570:48589-48608 | None:intergenic | 50.0% |
| TGGCTGCCCTGTGAAAAAGA+AGG | + | tig0019570:48588-48607 | Msa1374740:CDS | 50.0% | |
| !! | CCACACACGTTGGTTCCATG+TGG | - | tig0019570:47842-47861 | None:intergenic | 55.0% |
| CCACATGGAACCAACGTGTG+TGG | + | tig0019570:47839-47858 | Msa1374740:exon | 55.0% | |
| !! | CCCGAGAAGGGAGAGTGTTT+AGG | - | tig0019570:47878-47897 | None:intergenic | 55.0% |
| CTAACAGGTGTGTCCCGAGA+AGG | - | tig0019570:47891-47910 | None:intergenic | 55.0% | |
| TCGGGACACACCTGTTAGTG+CGG | + | tig0019570:47893-47912 | Msa1374740:CDS | 55.0% | |
| AACCTTGGAAACTCTCGGCG+AGG | - | tig0019570:48308-48327 | None:intergenic | 55.0% | |
| !! | CCACACACGTTGGTTCCATG+TGG | - | tig0019570:47842-47861 | None:intergenic | 55.0% |
| CCACATGGAACCAACGTGTG+TGG | + | tig0019570:47839-47858 | Msa1374740:exon | 55.0% | |
| !! | CCCGAGAAGGGAGAGTGTTT+AGG | - | tig0019570:47878-47897 | None:intergenic | 55.0% |
| CTAACAGGTGTGTCCCGAGA+AGG | - | tig0019570:47891-47910 | None:intergenic | 55.0% | |
| TCGGGACACACCTGTTAGTG+CGG | + | tig0019570:47893-47912 | Msa1374740:CDS | 55.0% | |
| AACCTTGGAAACTCTCGGCG+AGG | - | tig0019570:48308-48327 | None:intergenic | 55.0% | |
| GACCTCGCCGAGAGTTTCCA+AGG | + | tig0019570:48303-48322 | Msa1374740:CDS | 60.0% | |
| GACCTCGCCGAGAGTTTCCA+AGG | + | tig0019570:48303-48322 | Msa1374740:CDS | 60.0% | |
| CACAGGGCAGCCAGGAGCAA+AGG | - | tig0019570:48581-48600 | None:intergenic | 65.0% | |
| CACAGGGCAGCCAGGAGCAA+AGG | - | tig0019570:48581-48600 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0019570 | gene | 47798 | 48621 | 47798 | ID=Msa1374740;Name=Msa1374740 |
| tig0019570 | mRNA | 47798 | 48621 | 47798 | ID=Msa1374740-mRNA-1;Parent=Msa1374740;Name=Msa1374740-mRNA-1;_AED=0.14;_eAED=0.14;_QI=45|1|0.66|1|1|1|3|0|177 |
| tig0019570 | exon | 47798 | 47914 | 47798 | ID=Msa1374740-mRNA-1:exon:4094;Parent=Msa1374740-mRNA-1 |
| tig0019570 | exon | 48028 | 48360 | 48028 | ID=Msa1374740-mRNA-1:exon:4095;Parent=Msa1374740-mRNA-1 |
| tig0019570 | exon | 48493 | 48621 | 48493 | ID=Msa1374740-mRNA-1:exon:4096;Parent=Msa1374740-mRNA-1 |
| tig0019570 | five_prime_UTR | 47798 | 47842 | 47798 | ID=Msa1374740-mRNA-1:five_prime_utr;Parent=Msa1374740-mRNA-1 |
| tig0019570 | CDS | 47843 | 47914 | 47843 | ID=Msa1374740-mRNA-1:cds;Parent=Msa1374740-mRNA-1 |
| tig0019570 | CDS | 48028 | 48360 | 48028 | ID=Msa1374740-mRNA-1:cds;Parent=Msa1374740-mRNA-1 |
| tig0019570 | CDS | 48493 | 48621 | 48493 | ID=Msa1374740-mRNA-1:cds;Parent=Msa1374740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
